[med-svn] [python-cobra] 01/02: Imported Upstream version 0.3.2
Afif Elghraoui
afif-guest at moszumanska.debian.org
Tue Jun 9 15:06:29 UTC 2015
This is an automated email from the git hooks/post-receive script.
afif-guest pushed a commit to branch master
in repository python-cobra.
commit 35beca5785071e781b723c6997e2b844f2e4c772
Author: Afif Elghraoui <afif at ghraoui.name>
Date: Tue Jun 9 06:16:17 2015 -0700
Imported Upstream version 0.3.2
---
.gitignore | 18 +
.travis.yml | 17 +
INSTALL.md | 98 +
LICENSE | 674 +
MANIFEST.in | 2 +
README.md | 28 +
cobra/VERSION | 1 +
cobra/__init__.py | 30 +
cobra/clean.sh | 2 +
cobra/core/ArrayBasedModel.py | 427 +
cobra/core/DictList.py | 361 +
cobra/core/Formula.py | 194 +
cobra/core/Gene.py | 95 +
cobra/core/Metabolite.py | 77 +
cobra/core/Model.py | 383 +
cobra/core/Object.py | 64 +
cobra/core/Reaction.py | 723 +
cobra/core/Solution.py | 39 +
cobra/core/Species.py | 103 +
cobra/core/__init__.py | 22 +
cobra/external/__init__.py | 0
cobra/external/ppmap.py | 151 +
cobra/external/six.py | 747 +
cobra/flux_analysis/__init__.py | 16 +
cobra/flux_analysis/deletion_worker.py | 167 +
cobra/flux_analysis/double_deletion.py | 544 +
cobra/flux_analysis/essentiality.py | 92 +
cobra/flux_analysis/loopless.py | 57 +
cobra/flux_analysis/moma.py | 245 +
cobra/flux_analysis/objective.py | 45 +
cobra/flux_analysis/parsimonious.py | 65 +
cobra/flux_analysis/phenotype_phase_plane.py | 283 +
cobra/flux_analysis/reaction.py | 157 +
cobra/flux_analysis/single_deletion.py | 347 +
cobra/flux_analysis/variability.py | 96 +
cobra/io/__init__.py | 29 +
cobra/io/json.py | 169 +
cobra/io/mat.py | 181 +
cobra/io/sbml.py | 613 +
cobra/manipulation/__init__.py | 3 +
cobra/manipulation/delete.py | 218 +
cobra/manipulation/modify.py | 179 +
cobra/mlab/__init__.py | 15 +
cobra/mlab/matlab_scripts/cell_to_string.m | 3 +
cobra/mlab/matlab_scripts/create_container.m | 2 +
cobra/mlab/matlab_scripts/load_mat.m | 3 +
cobra/mlab/matlab_scripts/save_from_python.m | 3 +
cobra/mlab/mlab.py | 405 +
cobra/oven/README | 30 +
cobra/oven/WARNING | 1 +
cobra/oven/__init__.py | 2 +
cobra/oven/aliebrahim/__init__.py | 0
cobra/oven/aliebrahim/designAnalysis.py | 143 +
cobra/oven/aliebrahim/gapAnalysis.py | 209 +
cobra/oven/aliebrahim/gapAnalysis_MILP_figure.svg | 103 +
cobra/oven/aliebrahim/keggIO.py | 163 +
cobra/oven/aliebrahim/simphenyIO.py | 184 +
cobra/oven/danielhyduke/__init__.py | 0
cobra/oven/danielhyduke/construction/balance.py | 329 +
.../oven/danielhyduke/construction/omics_guided.py | 18 +
cobra/oven/danielhyduke/general/__init__.py | 1 +
cobra/oven/danielhyduke/general/arrays.py | 32 +
cobra/oven/danielhyduke/jython/README | 1 +
cobra/oven/danielhyduke/jython/__init__.py | 0
cobra/oven/danielhyduke/jython/numpy/README | 1 +
cobra/oven/danielhyduke/jython/numpy/__init__.py | 5 +
.../oven/danielhyduke/jython/numpy/core/Matrix.py | 211 +
.../danielhyduke/jython/numpy/core/__init__.py | 3 +
cobra/oven/danielhyduke/jython/numpy/core/core.py | 582 +
.../danielhyduke/jython/numpy/core/multiarray.py | 312 +
.../oven/danielhyduke/jython/numpy/core/numeric.py | 2217 +
.../danielhyduke/jython/numpy/core/numerictypes.py | 734 +
cobra/oven/danielhyduke/jython/scipy/README | 1 +
cobra/oven/danielhyduke/jython/scipy/__init__.py | 0
.../danielhyduke/jython/scipy/sparse/__init__.py | 22 +
.../oven/danielhyduke/jython/scipy/sparse/base.py | 615 +
.../danielhyduke/jython/scipy/sparse/compressed.py | 708 +
.../danielhyduke/jython/scipy/sparse/construct.py | 535 +
cobra/oven/danielhyduke/jython/scipy/sparse/csr.py | 652 +
cobra/oven/danielhyduke/jython/scipy/sparse/lil.py | 454 +
.../danielhyduke/jython/scipy/sparse/sputils.py | 133 +
cobra/oven/danielhyduke/query/__init__.py | 1 +
cobra/oven/danielhyduke/query/query.py | 63 +
cobra/solvers/__init__.py | 121 +
cobra/solvers/cglpk.pyx | 480 +
cobra/solvers/cplex_solver.py | 329 +
cobra/solvers/cplex_solver_java.py | 321 +
cobra/solvers/esolver.py | 155 +
cobra/solvers/glpk.pxd | 207 +
cobra/solvers/glpk_solver.py | 264 +
cobra/solvers/glpk_solver_java.py | 365 +
cobra/solvers/gurobi_solver.py | 252 +
cobra/solvers/gurobi_solver_java.py | 280 +
cobra/solvers/mosek.py | 235 +
cobra/solvers/parameters.py | 154 +
cobra/solvers/wrappers.py | 45 +
cobra/test/__init__.py | 71 +
cobra/test/data/iJO1366.json | 1 +
cobra/test/data/iJO1366.mat | Bin 0 -> 1549400 bytes
cobra/test/data/iJO1366.pickle | Bin 0 -> 1354269 bytes
cobra/test/data/iJO1366.xml | 85978 +++++++++++++++++
cobra/test/data/salmonella.genes | 4991 +
cobra/test/data/salmonella.media | 567 +
cobra/test/data/salmonella.pickle | Bin 0 -> 1475508 bytes
cobra/test/data/salmonella.xml | 91661 +++++++++++++++++++
cobra/test/data/salmonella_fbc.xml | 77257 ++++++++++++++++
cobra/test/data/update_pickles.py | 44 +
cobra/test/flux_analysis.py | 339 +
cobra/test/io_tests.py | 164 +
cobra/test/solvers.py | 289 +
cobra/test/unit_tests.py | 563 +
cobra/test_all.py | 7 +
cobra/topology/__init__.py | 9 +
cobra/topology/reporter_metabolites.py | 165 +
cobra/version.py | 133 +
documentation_builder/Makefile | 153 +
documentation_builder/autodoc.bat | 4 +
documentation_builder/autodoc.sh | 10 +
documentation_builder/building_model.ipynb | 267 +
documentation_builder/building_model.rst | 162 +
documentation_builder/cobra.core.rst | 94 +
documentation_builder/cobra.flux_analysis.rst | 102 +
documentation_builder/cobra.io.rst | 38 +
documentation_builder/cobra.manipulation.rst | 30 +
documentation_builder/cobra.mlab.rst | 22 +
documentation_builder/cobra.rst | 23 +
documentation_builder/cobra.solvers.rst | 54 +
documentation_builder/cobra.topology.rst | 22 +
documentation_builder/conf.py | 278 +
documentation_builder/deletions.ipynb | 401 +
documentation_builder/deletions.rst | 237 +
documentation_builder/faq.ipynb | 330 +
documentation_builder/faq.rst | 171 +
documentation_builder/getting_started.ipynb | 857 +
documentation_builder/getting_started.rst | 454 +
documentation_builder/index.rst | 29 +
documentation_builder/io.ipynb | 310 +
documentation_builder/io.rst | 189 +
documentation_builder/loopless.ipynb | 268 +
documentation_builder/loopless.rst | 189 +
.../loopless_files/loopless_4_0.png | Bin 0 -> 10776 bytes
documentation_builder/make.bat | 190 +
documentation_builder/milp.ipynb | 429 +
documentation_builder/milp.rst | 278 +
documentation_builder/phenotype_phase_plane.ipynb | 199 +
documentation_builder/phenotype_phase_plane.rst | 90 +
.../phenotype_phase_plane_5_0.png | Bin 0 -> 91579 bytes
.../phenotype_phase_plane_7_0.png | Bin 0 -> 101786 bytes
.../phenotype_phase_plane_7_1.png | Bin 0 -> 93758 bytes
.../phenotype_phase_plane_9_0.png | Bin 0 -> 64219 bytes
documentation_builder/pyscript.tpl | 29 +
documentation_builder/qp.ipynb | 307 +
documentation_builder/qp.rst | 185 +
documentation_builder/qp_files/qp_14_0.png | Bin 0 -> 16893 bytes
documentation_builder/qp_files/qp_3_0.png | Bin 0 -> 21854 bytes
documentation_builder/simulating.ipynb | 251 +
documentation_builder/simulating.rst | 141 +
examples/building_model.py | 126 +
examples/deletions.py | 92 +
examples/getting_started.py | 250 +
examples/io.py | 117 +
examples/loopless.py | 141 +
examples/milp.py | 217 +
examples/phenotype_phase_plane.py | 53 +
examples/qp.py | 133 +
examples/simulating.py | 81 +
ez_setup.py | 332 +
setup.py | 178 +
168 files changed, 290618 insertions(+)
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..dd122dc
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,18 @@
+*.pyc
+gurobi.log
+*$py.class
+documentation
+cobra.egg-info
+build/
+dist/
+.DS_Store
+setuptools-*egg
+setuptools-*.tar.gz
+cobra/solvers/cglpk.c
+cobra/solvers/*so
+glpk.h
+libglpk.a
+.idea/
+.ipynb_checkpoints
+examples/faq.py
+documentation_builder/test*\.*
diff --git a/.travis.yml b/.travis.yml
new file mode 100644
index 0000000..12a5f67
--- /dev/null
+++ b/.travis.yml
@@ -0,0 +1,17 @@
+language: python
+sudo: false
+python:
+ - "2.7"
+ - "3.4"
+# command to install dependencies
+before_install:
+ - export PIP_OPTS="-f https://opencobra.github.io/pypi_cobrapy_travis --no-index"
+ - if [[ $TRAVIS_PYTHON_VERSION == 2* ]]; then pip install glpk $PIP_OPTS; fi
+ - pip install python-libsbml-experimental cython numpy scipy $PIP_OPTS
+ - wget https://opencobra.github.io/pypi_cobrapy_travis/travis_test_dependencies.zip # esolver, and glpk
+ - unzip travis_test_dependencies.zip
+ - export PATH=$PATH:$PWD
+install:
+ - python setup.py develop
+# # command to run tests
+script: python setup.py test
diff --git a/INSTALL.md b/INSTALL.md
new file mode 100644
index 0000000..5fbbda3
--- /dev/null
+++ b/INSTALL.md
@@ -0,0 +1,98 @@
+For installation help, please use the [Google Group]
+(http://groups.google.com/group/cobra-pie).
+
+For usage instructions, please see the
+[documentation](https://cobrapy.readthedocs.org/en/latest/)
+
+--------------------------------------------------------------------------------
+
+All releases require Python 2.7+ or 3.4+ to be installed before proceeding.
+Mac OS X (10.7+) and Ubuntu ship with Python. Windows users without python
+can download and install python from the [python
+website](https://www.python.org/ftp/python/2.7.9/python-2.7.9.amd64.msi).
+Please note that though Anaconda and other python distributions may work with
+cobrapy, they are not explicitly supported at this time.
+
+
+#Installation of cobrapy
+
+## Stable version installation
+
+### Mac OS X
+0. [install pip] (http://pip.readthedocs.org/en/latest/installing.html).
+1. In a terminal, run ```sudo pip install cobra```
+
+### GNU/Linux
+0. [install pip] (http://pip.readthedocs.org/en/latest/installing.html).
+1. Install the python and glpk development libraries. On debian-based
+ systems (including Ubuntu and Mint), this can be done with
+ ```sudo apt-get install python-dev libglpk-dev```
+3. In a terminal, run ```sudo pip install cobra```
+
+### Microsoft Windows
+Download and install the appropriate 32 bit or 64 bit installer,
+both of which can be downloaded from the [python package
+index](https://pypi.python.org/pypi/cobra/).
+
+
+## Hacking version installation
+Use pip to install [Cython](http://cython.org/). Install libglpk
+using your package manger. This would be ```brew install glpk``` on a Mac
+and ```sudo apt-get install libglpk-dev``` on debian-based systems
+(including Ubuntu and Mint). GLPK can also be compiled from the
+released source.
+
+Clone the git repository using your preferred mothod. Cloning from your
+own [github fork](https://help.github.com/articles/fork-a-repo) is recommended!
+Afterwards, open a terminal, enter the cobrapy repository and run the following
+command:
+
+ python setup.py develop --user
+
+# Installation of optional dependencies
+## Optional Dependencies
+On windows, these can downloaded from [this site]
+(http://www.lfd.uci.edu/~gohlke/pythonlibs/). On Mac/Linux, they can be
+installed using pip, or from the OS package manager (e.g brew, apt, yum).
+
+1. [libsbml](http://sbml.org) >= 5.10 to read/write SBML files
+ * [Windows installer](http://www.lfd.uci.edu/~gohlke/pythonlibs/#libsbml)
+ * Use ```sudo pip install python-libsbml-experimental``` on Mac/Linux
+2. [numpy](http://numpy.org) >= 1.6.1 for double deletions
+ * [Windows installer](http://www.lfd.uci.edu/~gohlke/pythonlibs/#numpy)
+3. [scipy](http://scipy.org) >= 0.11 for ArrayBasedModel and saving to *.mat files.
+ * [Windows installer](http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy)
+
+## Other solvers
+cobrapy comes with bindings to the GNU Linear Programming Kit ([glpk]
+(http://www.gnu.org/software/glpk/)) using its own bindings called "cglpk" in
+cobrapy. In addition, cobrapy currently supports these linear programming
+solvers:
+
+ * ILOG/CPLEX (available with
+ [Academic](https://www.ibm.com/developerworks/university/academicinitiative/)
+ and
+ [Commercial](http://www.ibm.com/software/integration/optimization/cplex-optimizer/)
+ licenses).
+ * [gurobi](http://gurobi.com)
+ * [QSopt_ex esolver](http://www.dii.uchile.cl/~daespino/ESolver_doc/main.html)
+ * [MOSEK](http://www.mosek.com/)
+
+ILOG/CPLEX, MOSEK, and Gurobi are commercial software packages that currently
+provide free licenses for academics and support both linear and quadratic
+programming. GLPK is an opensource linear programming solver; however, it
+does not support quadratic programming and is not as robust as the
+commercial solvers when it comes to mixed-integer linear programming.
+QSopt_ex esolver is also open source, and can solve linear programs
+using rational operations, giving exact solutions.
+
+
+# Testing your installation
+1. Start python
+2. Type the following into the Python shell
+
+```python
+from cobra.test import test_all
+test_all()
+```
+
diff --git a/LICENSE b/LICENSE
new file mode 100644
index 0000000..94a9ed0
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,674 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
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+ 17. Interpretation of Sections 15 and 16.
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+copy of the Program in return for a fee.
+
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+
+ How to Apply These Terms to Your New Programs
+
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+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
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+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
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+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
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+ GNU General Public License for more details.
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+ This is free software, and you are welcome to redistribute it
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+
+The hypothetical commands `show w' and `show c' should show the appropriate
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+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
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+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/MANIFEST.in b/MANIFEST.in
new file mode 100644
index 0000000..a675f66
--- /dev/null
+++ b/MANIFEST.in
@@ -0,0 +1,2 @@
+include README.md INSTALL.md LICENSE ez_setup.py
+include cobra/solvers/cglpk.pyx cobra/solvers/glpk.pxd
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..dfe1848
--- /dev/null
+++ b/README.md
@@ -0,0 +1,28 @@
+cobrapy
+=======
+
+To install, please follow the [instructions](INSTALL.md).
+
+The documentation is browseable online at [readthedocs](https://cobrapy.readthedocs.org/en/latest/)
+and can also be [downloaded](https://readthedocs.org/projects/cobrapy/downloads/).
+
+Please use the [Google Group](http://groups.google.com/group/cobra-pie) for help. More information about
+opencobra is available at the [website](http://opencobra.github.io/).
+
+If you use cobrapy in a scientific publication, please cite
+[doi:10.1186/1752-0509-7-74](http://dx.doi.org/doi:10.1186/1752-0509-7-74)
+
+License
+-------
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
diff --git a/cobra/VERSION b/cobra/VERSION
new file mode 100644
index 0000000..d15723f
--- /dev/null
+++ b/cobra/VERSION
@@ -0,0 +1 @@
+0.3.2
diff --git a/cobra/__init__.py b/cobra/__init__.py
new file mode 100644
index 0000000..d63ad2e
--- /dev/null
+++ b/cobra/__init__.py
@@ -0,0 +1,30 @@
+# set the warning format to be on a single line
+import warnings as _warnings
+from os.path import abspath as _abspath, dirname as _dirname
+from os import name as _name
+
+# set the warning format to be prettier and fit on one line
+_cobra_path = _dirname(_abspath(__file__))
+if _name == "posix":
+ _warning_base = "%s:%s \x1b[1;31m%s\x1b[0m: %s\n" # colors
+else:
+ _warning_base = "%s:%s %s: %s\n"
+
+
+def _warn_format(message, category, filename, lineno, file=None, line=None):
+ shortname = filename.replace(_cobra_path, "cobra", 1)
+ return _warning_base % (shortname, lineno, category.__name__, message)
+_warnings.formatwarning = _warn_format
+
+from .version import get_version
+__version__ = get_version()
+from .core import Object, Formula, Metabolite, Gene, Reaction, Model, \
+ DictList, Species
+from . import io, flux_analysis
+
+try:
+ from .core import ArrayBasedModel
+except ImportError:
+ None
+
+del get_version
diff --git a/cobra/clean.sh b/cobra/clean.sh
new file mode 100644
index 0000000..c957a1b
--- /dev/null
+++ b/cobra/clean.sh
@@ -0,0 +1,2 @@
+find . -type f -regex '.*pyc' | xargs rm
+find . -type f -regex '.*class' | xargs rm
diff --git a/cobra/core/ArrayBasedModel.py b/cobra/core/ArrayBasedModel.py
new file mode 100644
index 0000000..5822861
--- /dev/null
+++ b/cobra/core/ArrayBasedModel.py
@@ -0,0 +1,427 @@
+from sys import maxsize
+from copy import deepcopy
+from warnings import warn
+
+from numpy import array, hstack, ndarray
+from scipy.sparse import lil_matrix, dok_matrix
+
+from .Model import Model
+from ..external.six import iteritems
+
+
+class ArrayBasedModel(Model):
+ """ArrayBasedModel is a class that adds arrays and vectors to
+ a cobra.Model to make it easier to perform linear algebra operations.
+
+ """
+
+ def __init__(self, description=None, deepcopy_model=False,
+ matrix_type='scipy.lil_matrix'):
+ """
+ description: None | String | cobra.Model
+
+ deepcopy_model: Boolean. If True and description is
+ a cobra.Model then make a deepcopy of the Model before
+ creating the ArrayBasedModel.
+
+ matrix_type: 'scipy.lil_matrix' or 'scipy.dok_matrix'
+ Specifies which type of backend matrix to use for S.
+
+ """
+ if deepcopy_model and isinstance(description, Model):
+ description = description.copy()
+ Model.__init__(self, description)
+ self._S = None
+ self.matrix_type = matrix_type
+ self.update()
+
+ # no setter for S at the moment
+ @property
+ def S(self):
+ """Stoichiometric matrix of the model
+
+ This will be formatted as either :class:`~scipy.sparse.lil_matrix`
+ or :class:`~scipy.sparse.dok_matrix`
+
+ """
+ return self._S
+
+ @property
+ def lower_bounds(self):
+ return self._lower_bounds
+
+ @lower_bounds.setter
+ def lower_bounds(self, vector):
+ self._update_from_vector("lower_bounds", vector)
+
+ @property
+ def upper_bounds(self):
+ return self._upper_bounds
+
+ @upper_bounds.setter
+ def upper_bounds(self, vector):
+ self._update_from_vector("upper_bounds", vector)
+
+ @property
+ def objective_coefficients(self):
+ return self._objective_coefficients
+
+ @objective_coefficients.setter
+ def objective_coefficients(self, vector):
+ self._update_from_vector("objective_coefficients", vector)
+
+ @property
+ def b(self):
+ """bounds for metabolites as :class:`numpy.ndarray`"""
+ return self._b
+
+ @b.setter
+ def b(self, b):
+ self._update_from_vector("b", vector)
+
+ @property
+ def constraint_sense(self):
+ return self._constraint_sense
+
+ @constraint_sense.setter
+ def constraint_sense(self, vector):
+ self._update_from_vector("_constraint_sense", vector)
+
+ def copy(self):
+ """Provides a partial 'deepcopy' of the Model. All of the Metabolite,
+ Gene, and Reaction objects are created anew but in a faster fashion
+ than deepcopy
+
+ """
+ the_copy = Model.copy(self)
+ the_copy.update()
+ return the_copy
+
+ def add_metabolites(self, metabolite_list,
+ expand_stoichiometric_matrix=True):
+ """Will add a list of metabolites to the the object, if they do not
+ exist and then expand the stochiometric matrix
+
+ metabolite_list: A list of :class:`~cobra.core.Metabolite` objects
+
+ expand_stoichimetric_matrix: Boolean. If True and self.S is
+ not None then it will add rows to self.S. self.S must be
+ created after adding reactions and metabolites to self before
+ it can be expanded. Trying to expand self.S when self only
+ contains metabolites is ludacris.
+
+ """
+ Model.add_metabolites(self, metabolite_list)
+ if self._S is not None and expand_stoichiometric_matrix:
+ s_expansion = len(self.metabolites) - self._S.shape[0]
+ if s_expansion > 0:
+ self._S.resize((self._S.shape[0] + s_expansion,
+ self._S.shape[1]))
+ self._update_metabolite_vectors()
+
+ def _update_from_vector(self, attribute, vector):
+ """convert from model.reactions = v to model.reactions[:] = v"""
+ # this will fail if vector is the wrong length
+ getattr(self, attribute)[:] = vector
+
+ def _update_reaction(self, reaction):
+ """Updates everything associated with the reaction.id of reaction.
+
+ reaction: A cobra.Reaction object, or a list of these objects.
+
+ WARNING: This function is only used after the Model has been
+ converted to matrices. It is typically faster to access the objects
+ in the Model directly. This function will eventually moved to another
+ module for advanced users due to the potential for mistakes.
+
+
+ """
+ if not hasattr(reaction, '__iter__'):
+ reaction = [reaction]
+ Model._update_reaction(reaction)
+ for the_reaction in reaction:
+ try:
+ reaction_index = self.reactions.index(the_reaction.id)
+ except KeyError:
+ warn(the_reaction.id + ' is not in the model')
+ continue
+
+ # zero reaction stoichiometry column
+ the_column = self._S[:, reaction_index]
+ for nonzero_index in the_column.nonzero()[0]:
+ the_column[nonzero_index, 0] = 0
+ self._lower_bounds[reaction_index] = the_reaction.lower_bound
+ self._upper_bounds[reaction_index] = the_reaction.upper_bound
+ self.objective_coefficients[
+ reaction_index] = the_reaction.objective_coefficient
+ self.add_metabolites(the_reaction._metabolites)
+ # Make sure that the metabolites are the ones contained in the
+ # model
+ the_reaction._metabolites = [self.metabolite.get_by_id(x.id)
+ for x in the_reaction._metabolites]
+ # Update the stoichiometric matrix
+ metabolite_indices = map(
+ self.metabolites.index,
+ the_reaction._metabolites)
+ for (index, metabolite_index) in enumerate(metabolite_indices):
+ self._S[metabolite_index, reaction_index] = \
+ the_reaction.stoichiometric_coefficients[index]
+
+ def add_reactions(self, reaction_list, update_matrices=True):
+ """Will add a cobra.Reaction object to the model, if
+ reaction.id is not in self.reactions.
+
+ reaction_list: A :class:`~cobra.core.Reaction` object or a list of them
+
+ update_matrices: Boolean. If true populate / update matrices
+ S, lower_bounds, upper_bounds, .... Note this is slow to run
+ for very large models and using this option with repeated calls
+ will degrade performance. Better to call self.update() after
+ adding all reactions.
+
+
+ If the stoichiometric matrix is initially empty then initialize a 1x1
+ sparse matrix and add more rows as needed in the self.add_metabolites
+ function
+
+ """
+ Model.add_reactions(self, reaction_list)
+ if update_matrices:
+ self._update_matrices(reaction_list)
+
+ def remove_reactions(self, reactions, update_matrices=True, **kwargs):
+ """remove reactions from teh model
+
+ See :func:`cobra.core.Model.Model.remove_reactions`
+
+ update_matrices: Boolean
+ If true populate / update matrices S, lower_bounds, upper_bounds.
+ Note that this is slow to run for very large models, and using this
+ option with repeated calls will degrade performance.
+
+ """
+ Model.remove_reactions(self, reactions, **kwargs)
+ if update_matrices:
+ self._update_matrices()
+
+ def _construct_matrices(self):
+ """Large sparse matrices take time to construct and to read / write.
+ This function allows one to let the model exists without cobra_model.S
+ and then generate it at needed.
+
+ """
+ self._update_matrices() # This does basic construction as well.
+
+ def _update_reaction_vectors(self):
+ """regenerates the lower_bounds, upper_bounds,
+ and objective_coefficients vectors.
+
+ WARNING: This function is only used after the Model has been
+ converted to matrices. It is typically faster to access the objects
+ in the Model directly. This function will eventually moved to another
+ module for advanced users due to the potential for mistakes.
+
+
+ """
+ self._lower_bounds = LinkedArray(self.reactions, "lower_bound")
+ self._upper_bounds = LinkedArray(self.reactions, "upper_bound")
+ self._objective_coefficients = LinkedArray(self.reactions,
+ "objective_coefficient")
+
+ def _update_metabolite_vectors(self):
+ """regenerates _b and _constraint_sense
+
+ WARNING: This function is only used after the Model has been
+ converted to matrices. It is typically faster to access the objects
+ in the Model directly. This function will eventually moved to another
+ module for advanced users due to the potential for mistakes.
+
+ """
+ self._b = LinkedArray(self.metabolites, "_bound")
+ self._constraint_sense = LinkedArray(
+ self.metabolites,
+ "_constraint_sense")
+
+ def _update_matrices(self, reaction_list=None):
+ """
+ reaction_list: None or a list of cobra.Reaction objects that are in
+ self.reactions. If None then reconstruct the whole matrix.
+
+ NOTE: reaction_list is assumed to be at the end of self.reactions.
+
+ In the future, we'll be able to use reactions from anywhere in the
+ list
+
+ WARNING: This function is only used after the Model has been
+ converted to matrices. It is typically faster to access the objects
+ in the Model directly. This function will eventually moved to another
+ module for advanced users due to the potential for mistakes.
+
+ """
+ # no need to create matrix if there are no reactions or metabolites
+ if len(self.reactions) == 0 and len(self.metabolites) == 0:
+ return
+ elif len(self.metabolites) == 0:
+ self._update_reaction_vectors()
+ return
+ elif len(self.reactions) == 0:
+ self._update_metabolite_vectors()
+ return
+ # Pretty much all of these things are unnecessary to use the objects
+ # and interact with the optimization solvers. It might be best to move
+ # them to linear algebra modules. If no reactions are present in the
+ # Model, initialize the arrays
+ if self._S is None or reaction_list is None:
+ reaction_list = self.reactions
+ SMatrix = SMatrix_classes[self.matrix_type]
+ self._S = SMatrix((len(self.metabolites),
+ len(self.reactions)), model=self)
+ self._update_reaction_vectors()
+ else: # Expand the arrays to accomodate the new reaction
+ self._S.resize((len(self.metabolites),
+ len(self.reactions)))
+ lower_bounds = array([x.lower_bound
+ for x in reaction_list])
+ upper_bounds = array([x.upper_bound
+ for x in reaction_list])
+ objective_coefficients = array([x.objective_coefficient
+ for x in reaction_list])
+ self._lower_bounds._extend(lower_bounds)
+ self._upper_bounds._extend(upper_bounds)
+ self._objective_coefficients._extend(objective_coefficients)
+
+ coefficient_dictionary = {}
+ for the_reaction in reaction_list:
+ reaction_index = self.reactions.index(the_reaction.id)
+ for the_key, the_value in the_reaction._metabolites.items():
+ coefficient_dictionary[(self.metabolites.index(the_key.id),
+ reaction_index)] = the_value
+
+ self._S.update(coefficient_dictionary)
+
+ def update(self):
+ """Regenerates the stoichiometric matrix and vectors"""
+ self._update_matrices()
+ self._update_metabolite_vectors()
+
+
+class LinkedArray(ndarray):
+ """A :class:`numpy.ndarray` which updates an attribute from a list"""
+ def __new__(cls, list, attribute):
+ # construct a new ndarray with the values from the list
+ # For example, if the list if model.reactions and the attribute is
+ # "lower_bound" create an array of [reaction.lower_bound for ... ]
+ x = array([getattr(i, attribute) for i in list]).view(cls)
+ return x.copy()
+
+ def __init__(self, list, attribute):
+ self._list = list
+ self._attr = attribute
+
+ def __setitem__(self, index, value):
+ ndarray.__setitem__(self, index, value)
+ if isinstance(index, slice):
+ for i, entry in enumerate(self._list[index]):
+ setattr(entry, self._attr, value)
+ else:
+ setattr(self._list[index], self._attr, value)
+
+ def __setslice__(self, i, j, value):
+ ndarray.__setitem__(self, slice(i, j), value)
+ if j == maxsize:
+ j = len(self)
+ if hasattr(value, "__getitem__"): # setting to a list
+ for index in range(i, j):
+ setattr(self._list[index], self._attr, value[index])
+ else:
+ for index in range(i, j):
+ setattr(self._list[index], self._attr, value)
+
+ def _extend(self, other):
+ old_size = len(self)
+ new_size = old_size + len(other)
+ self.resize(new_size, refcheck=False)
+ ndarray.__setitem__(self, slice(old_size, new_size), other)
+
+
+class SMatrix_dok(dok_matrix):
+ """A 2D sparse dok matrix which maintains links to a cobra Model"""
+
+ def __init__(self, *args, **kwargs):
+ dok_matrix.__init__(self, *args)
+ self.format = "dok"
+ self._model = kwargs["model"] if "model" in kwargs else None
+
+ def __setitem__(self, index, value):
+ dok_matrix.__setitem__(self, index, value)
+ if isinstance(index[0], int) and isinstance(index[1], int):
+ reaction = self._model.reactions[index[1]]
+ if value != 0:
+ reaction.add_metabolites(
+ {self._model.metabolites[index[0]]: value}, combine=False)
+ else: # setting 0 means metabolites should be removed
+ metabolite = self._model.metabolites[index[0]]
+ if metabolite in reaction._metabolites:
+ reaction.pop(metabolite)
+
+ def tolil(self):
+ new = SMatrix_lil(dok_matrix.tolil(self), model=self._model)
+ return new
+
+
+class SMatrix_lil(lil_matrix):
+ """A 2D sparse lil matrix which maintains links to a cobra Model"""
+
+ def __init__(self, *args, **kwargs):
+ lil_matrix.__init__(self, *args)
+ self.format = "lil"
+ self._model = kwargs["model"] if "model" in kwargs else None
+
+ def __setitem__(self, index, value):
+ lil_matrix.__setitem__(self, index, value)
+ if isinstance(index[0], int):
+ metabolites = [self._model.metabolites[index[0]]]
+ else:
+ metabolites = self._model.metabolites[index[0]]
+
+ if isinstance(index[1], int):
+ reactions = [self._model.reactions[index[1]]]
+ else:
+ reactions = self._model.reactions[index[1]]
+
+ if value == 0: # remove_metabolites
+ met_set = set(metabolites)
+ for reaction in reactions:
+ to_remove = met_set.intersection(reaction._metabolites)
+ for i in to_remove:
+ reaction.pop(i)
+ else: # add metabolites
+ met_dict = {met: value for met in metabolites}
+ for reaction in reactions:
+ reaction.add_metabolites(met_dict, combine=False)
+
+ def update(self, value_dict):
+ """update matrix without propagating to model"""
+ if len(value_dict) < 100: # TODO benchmark for heuristic
+ for index, value in iteritems(value_dict):
+ lil_matrix.__setitem__(self, index, value)
+ else:
+ matrix = lil_matrix.todok(self)
+ matrix.update(value_dict)
+ self = SMatrix_lil(matrix.tolil(), model=self._model)
+ self._model._S = self
+
+ def todok(self):
+ new = SMatrix_dok(lil_matrix.todok(self), model=self._model)
+ return new
+
+ # TODO: check if implemented before using own function
+ def resize(self, shape):
+ matrix = lil_matrix.todok(self)
+ matrix.resize(shape)
+ self = SMatrix_lil(matrix.tolil(), model=self._model)
+ self._model._S = self
+
+
+SMatrix_classes = {"scipy.dok_matrix": SMatrix_dok,
+ "scipy.lil_matrix": SMatrix_lil}
diff --git a/cobra/core/DictList.py b/cobra/core/DictList.py
new file mode 100644
index 0000000..20ab498
--- /dev/null
+++ b/cobra/core/DictList.py
@@ -0,0 +1,361 @@
+from copy import copy, deepcopy
+import re
+from ..external.six import string_types, iteritems
+from itertools import islice
+
+try:
+ from numpy import bool_
+except:
+ bool_ = bool
+
+
+class DictList(list):
+ """A combined dict and list
+
+ This object behaves like a list, but has the O(1) speed
+ benefits of a dict when looking up elements by their id.
+
+ """
+
+ def __init__(self, *args):
+ if len(args) > 2:
+ raise TypeError("takes at most 1 argument (%d given)" % len(args))
+ list.__init__(self)
+ self._dict = {}
+ if len(args) == 1:
+ other = args[0]
+ if isinstance(other, DictList):
+ list.extend(self, other)
+ self._dict = other._dict.copy()
+ else:
+ self.extend(other)
+
+ def has_id(self, id):
+ return id in self._dict
+
+ def _check(self, id):
+ """make sure duplicate id's are not added.
+ This function is called before adding in elements.
+
+ """
+ if id in self._dict:
+ raise ValueError("id %s is already present in list" % str(id))
+
+ def _generate_index(self):
+ """rebuild the _dict index"""
+ self._dict = {v.id: k for k, v in enumerate(self)}
+
+ def get_by_id(self, id):
+ """return the element with a matching id"""
+ return self[self._dict[id]]
+
+ def list_attr(self, attribute):
+ """return a list of the given attribute for every object
+
+ """
+ return [getattr(i, attribute) for i in self]
+
+ def query(self, search_function, attribute="id"):
+ """query the list
+
+ search_function: used to select which objects to return
+ * a string, in which case any object.attribute containing
+ the string will be returned
+
+ * a compiled regular expression
+
+ * a function which takes one argument and returns True
+ for desired values
+
+ attribute: the attribute to be searched for (default is 'id').
+ If this is None, the object itself is used.
+
+ returns: a list of objects which match the query
+ """
+ if attribute is None:
+ def select_attribute(x):
+ return x
+ else:
+ def select_attribute(x):
+ return getattr(x, attribute)
+
+ # if the search_function is a regular expression
+ if isinstance(search_function, str):
+ search_function = re.compile(search_function)
+ if hasattr(search_function, "findall"):
+ matches = (i for i in self
+ if search_function.findall(select_attribute(i)) != [])
+ else:
+ matches = (i for i in self
+ if search_function(select_attribute(i)))
+ results = self.__class__()
+ results._extend_nocheck(matches)
+ return results
+
+ def _replace_on_id(self, new_object):
+ """Replace an object by another with the same id."""
+ the_id = new_object.id
+ the_index = self._dict[the_id]
+ list.__setitem__(self, the_index, new_object)
+
+ # overriding default list functions with new ones
+ def append(self, object):
+ """append object to end"""
+ the_id = object.id
+ self._check(the_id)
+ self._dict[the_id] = len(self)
+ list.append(self, object)
+
+ def union(self, iterable):
+ """adds elements with id's not already in the model"""
+ _dict = self._dict
+ append = self.append
+ for i in iterable:
+ if i.id not in _dict:
+ append(i)
+
+ def extend(self, iterable):
+ """extend list by appending elements from the iterable"""
+ # Sometimes during initialization from an older pickle, _dict
+ # will not have initialized yet, because the initialization class was
+ # left unspecified. This is an issue because unpickling calls
+ # DictList.extend, which requires the presence of _dict. Therefore,
+ # the issue is caught and addressed here.
+ if not hasattr(self, "_dict") or self._dict is None:
+ self._dict = {}
+ _dict = self._dict
+ current_length = len(self)
+ list.extend(self, iterable)
+ for i, obj in enumerate(islice(self, current_length, None),
+ current_length):
+ the_id = obj.id
+ if the_id not in _dict:
+ _dict[the_id] = i
+ else:
+ # undo the extend and raise an error
+ self = self[:current_length]
+ self._check(the_id)
+ # if the above succeeded, then the id must be present
+ # twice in the list being added
+ raise ValueError("id '%s' at index %d is non-unique. "
+ "Is it present twice?" % (str(the_id), i))
+
+ def _extend_nocheck(self, iterable):
+ """extends without checking for uniqueness
+
+ This function should only be used internally by DictList when it
+ can guarentee elements are already unique (as in when coming from
+ self or other DictList). It will be faster because it skips these
+ checks.
+
+ """
+ current_length = len(self)
+ list.extend(self, iterable)
+ _dict = self._dict
+ if current_length is 0:
+ self._generate_index()
+ return
+ for i, obj in enumerate(islice(self, current_length, None),
+ current_length):
+ _dict[obj.id] = i
+
+ def __add__(self, other):
+ """x.__add__(y) <==> x + y
+
+ other: iterable
+ other must contain only unique id's which do not intersect
+ with self
+
+ """
+ total = DictList()
+ total.extend(self)
+ total.extend(other)
+ return total
+
+ def __iadd__(self, other):
+ """x.__iadd__(y) <==> x += y
+
+ other: iterable
+ other must contain only unique id's whcih do not intersect
+ with self
+
+ """
+ self.extend(other)
+ return self
+
+ def __reduce__(self):
+ return (self.__class__, (), self.__getstate__(), self.__iter__())
+
+ def __getstate__(self):
+ """gets internal state
+
+ This is only provided for backwards compatibilty so older
+ versions of cobrapy can load pickles generated with cobrapy. In
+ reality, the "_dict" state is ignored when loading a pickle"""
+ return {"_dict": self._dict}
+
+ def __setstate__(self, state):
+ """sets internal state
+
+ Ignore the passed in state and recalculate it. This is only for
+ compatibility with older pickles which did not correctly specify
+ the initialization class"""
+ self._generate_index()
+
+ def index(self, id, *args):
+ """Determine the position in the list
+
+ id: A string or a :class:`~cobra.core.Object.Object`
+
+ """
+ # because values are unique, start and stop are not relevant
+ if isinstance(id, string_types):
+ try:
+ return self._dict[id]
+ except KeyError:
+ raise ValueError("%s not found" % id)
+ try:
+ i = self._dict[id.id]
+ if self[i] is not id:
+ raise ValueError(
+ "Another object with the identical id (%s) found" % id.id)
+ return i
+ except KeyError:
+ raise ValueError("%s not found" % str(id))
+
+ def __contains__(self, object):
+ """DictList.__contains__(object) <==> object in DictList
+
+ object: str or :class:`~cobra.core.Object.Object`
+
+ """
+ if hasattr(object, "id"):
+ the_id = object.id
+ # allow to check with the object itself in addition to the id
+ else:
+ the_id = object
+ return the_id in self._dict
+
+ def __copy__(self):
+ the_copy = DictList()
+ list.extend(the_copy, self)
+ the_copy._dict = self._dict.copy()
+ return the_copy
+
+ def insert(self, index, object):
+ """insert object before index"""
+ self._check(object.id)
+ list.insert(self, index, object)
+ # all subsequent entries now have been shifted up by 1
+ _dict = self._dict
+ for i, j in iteritems(_dict):
+ if j >= index:
+ _dict[i] = j + 1
+ _dict[object.id] = index
+
+ def pop(self, *args):
+ """remove and return item at index (default last)."""
+ value = list.pop(self, *args)
+ index = self._dict.pop(value.id)
+ # If the pop occured from a location other than the end of the list,
+ # we will need to subtract 1 from every entry afterwards
+ if len(args) == 0 or args == [-1]: # removing from the end of the list
+ return
+ _dict = self._dict
+ for i, j in iteritems(_dict):
+ if j > index:
+ _dict[i] = j - 1
+ return value
+
+ def remove(self, x):
+ """.. warning :: Internal use only"""
+ # Each item is unique in the list which allows this
+ # It is much faster to do a dict lookup than n string comparisons
+ self.pop(self.index(x))
+
+ # these functions are slower because they rebuild the _dict every time
+ def reverse(self):
+ """reverse *IN PLACE*"""
+ list.reverse(self)
+ self._generate_index()
+
+ def sort(self, cmp=None, key=None, reverse=False):
+ """stable sort *IN PLACE*
+
+ cmp(x, y) -> -1, 0, 1
+
+ """
+ if key is None:
+ def key(i):
+ return i.id
+ list.sort(self, cmp=cmp, key=key, reverse=reverse)
+ self._generate_index()
+
+ def __getitem__(self, i):
+ if isinstance(i, slice):
+ selection = self.__class__()
+ selection._extend_nocheck(list.__getitem__(self, i))
+ return selection
+ elif hasattr(i, "__len__"):
+ if len(i) == len(self) and isinstance(i[0], (bool, bool_)):
+ selection = self.__class__()
+ result = (o for j, o in enumerate(self) if i[j])
+ selection._extend_nocheck(result)
+ return selection
+ else:
+ return self.__class__(list.__getitem__(self, i))
+ else:
+ return list.__getitem__(self, i)
+
+ def __setitem__(self, i, y):
+ if isinstance(i, slice):
+ # In this case, y needs to be a list. We will ensure all
+ # the id's are unique
+ for obj in y: # need to be setting to a list
+ self._check(obj.id)
+ # Insert a temporary placeholder so we catch the presence
+ # of a duplicate in the items being added
+ self._dict[obj.id] = None
+ list.__setitem__(self, i, y)
+ self._generate_index()
+ return
+ self._dict.pop(self[i].id)
+ the_id = y.id
+ self._check(the_id)
+ list.__setitem__(self, i, y)
+ self._dict[the_id] = i
+
+ def __delitem__(self, index):
+ removed = self[index]
+ list.__delitem__(self, index)
+ if isinstance(removed, list):
+ self._generate_index()
+ return
+ _dict = self._dict
+ _dict.pop(removed.id)
+ for i, j in iteritems(_dict):
+ if j > index:
+ _dict[i] = j - 1
+
+ def __getslice__(self, i, j):
+ return self.__getitem__(slice(i, j))
+
+ def __setslice__(self, i, j, y):
+ self.__setitem__(slice(i, j), y)
+
+ def __delslice__(self, i, j):
+ self.__delitem__(slice(i, j))
+
+ def __getattr__(self, attr):
+ try:
+ return DictList.get_by_id(self, attr)
+ except KeyError:
+ raise AttributeError("DictList has no attribute or entry %s" %
+ (attr))
+
+ def __dir__(self):
+ # override this to allow tab complete of items by their id
+ attributes = dir(self.__class__)
+ attributes.append("_dict")
+ attributes.extend(self._dict.keys())
+ return attributes
diff --git a/cobra/core/Formula.py b/cobra/core/Formula.py
new file mode 100644
index 0000000..d17f72f
--- /dev/null
+++ b/cobra/core/Formula.py
@@ -0,0 +1,194 @@
+import re
+from warnings import warn
+from copy import deepcopy
+from .Object import Object
+
+# Numbers are not required because of the |(?=[A-Z])? block. See the
+# discussion in https://github.com/opencobra/cobrapy/issues/128 for
+# more details.
+element_re = re.compile("([A-Z][a-z]?)([0-9.]+[0-9.]?|(?=[A-Z])?)")
+
+
+class Formula(Object):
+ """Describes a Chemical Formula
+
+ A legal formula string contains only letters and numbers.
+
+ """
+ def __init__(self, formula=None):
+ Object.__init__(self, formula)
+ self.formula = formula
+ self.elements = {}
+ if self.formula is not None:
+ self.parse_composition()
+
+ def __add__(self, other_formula):
+ """Combine two molecular formulas.
+
+ other_formula: cobra.Formula or str of a chemical Formula.
+
+ """
+ return Formula(self.formula + other_formula.formula)
+
+ def parse_composition(self):
+ """Breaks the chemical formula down by element."""
+ tmp_formula = self.formula
+ # commonly occuring characters in incorrectly constructed formulas
+ if "*" in tmp_formula:
+ warn("invalid character '*' found in formula '%s'" % self.formula)
+ tmp_formula = self.formula.replace("*", "")
+ if "(" in tmp_formula or ")" in tmp_formula:
+ warn("parenthesis found in formula '%s'" % self.formula)
+ return
+ composition = {}
+ parsed = element_re.findall(tmp_formula)
+ for (element, count) in parsed:
+ if count == '':
+ count = 1
+ else:
+ try:
+ count = float(count)
+ int_count = int(count)
+ if count == int_count:
+ count = int_count
+ else:
+ warn("%s is not an integer (in formula %s)" %
+ (count, self.formula))
+ except ValueError:
+ warn("failed to parse %s (in formula %s)" %
+ (count, self.formula))
+ self.elements = {}
+ return
+ if element in composition:
+ composition[element] += count
+ else:
+ composition[element] = count
+ self.elements = composition
+
+ @property
+ def weight(self):
+ """Calculate the formula weight"""
+ weight_dict = elements_and_molecular_weights
+ try:
+ return sum([count * elements_and_molecular_weights[element]
+ for element, count in self.elements.items()])
+ except KeyError as e:
+ warn("The element %s does not appear in the peridic table" % e)
+
+
+elements_and_molecular_weights = {
+ 'H': 1.007940,
+ 'He': 4.002602,
+ 'Li': 6.941000,
+ 'Be': 9.012182,
+ 'B': 10.811000,
+ 'C': 12.010700,
+ 'N': 14.006700,
+ 'O': 15.999400,
+ 'F': 18.998403,
+ 'Ne': 20.179700,
+ 'Na': 22.989770,
+ 'Mg': 24.305000,
+ 'Al': 26.981538,
+ 'Si': 28.085500,
+ 'P': 30.973761,
+ 'S': 32.065000,
+ 'Cl': 35.453000,
+ 'Ar': 39.948000,
+ 'K': 39.098300,
+ 'Ca': 40.078000,
+ 'Sc': 44.955910,
+ 'Ti': 47.867000,
+ 'V': 50.941500,
+ 'Cr': 51.996100,
+ 'Mn': 54.938049,
+ 'Fe': 55.845000,
+ 'Co': 58.933200,
+ 'Ni': 58.693400,
+ 'Cu': 63.546000,
+ 'Zn': 65.409000,
+ 'Ga': 69.723000,
+ 'Ge': 72.640000,
+ 'As': 74.921600,
+ 'Se': 78.960000,
+ 'Br': 79.904000,
+ 'Kr': 83.798000,
+ 'Rb': 85.467800,
+ 'Sr': 87.620000,
+ 'Y': 88.905850,
+ 'Zr': 91.224000,
+ 'Nb': 92.906380,
+ 'Mo': 95.940000,
+ 'Tc': 98.000000,
+ 'Ru': 101.070000,
+ 'Rh': 102.905500,
+ 'Pd': 106.420000,
+ 'Ag': 107.868200,
+ 'Cd': 112.411000,
+ 'In': 114.818000,
+ 'Sn': 118.710000,
+ 'Sb': 121.760000,
+ 'Te': 127.600000,
+ 'I': 126.904470,
+ 'Xe': 131.293000,
+ 'Cs': 132.905450,
+ 'Ba': 137.327000,
+ 'La': 138.905500,
+ 'Ce': 140.116000,
+ 'Pr': 140.907650,
+ 'Nd': 144.240000,
+ 'Pm': 145.000000,
+ 'Sm': 150.360000,
+ 'Eu': 151.964000,
+ 'Gd': 157.250000,
+ 'Tb': 158.925340,
+ 'Dy': 162.500000,
+ 'Ho': 164.930320,
+ 'Er': 167.259000,
+ 'Tm': 168.934210,
+ 'Yb': 173.040000,
+ 'Lu': 174.967000,
+ 'Hf': 178.490000,
+ 'Ta': 180.947900,
+ 'W': 183.840000,
+ 'Re': 186.207000,
+ 'Os': 190.230000,
+ 'Ir': 192.217000,
+ 'Pt': 195.078000,
+ 'Au': 196.966550,
+ 'Hg': 200.590000,
+ 'Tl': 204.383300,
+ 'Pb': 207.200000,
+ 'Bi': 208.980380,
+ 'Po': 209.000000,
+ 'At': 210.000000,
+ 'Rn': 222.000000,
+ 'Fr': 223.000000,
+ 'Ra': 226.000000,
+ 'Ac': 227.000000,
+ 'Th': 232.038100,
+ 'Pa': 231.035880,
+ 'U': 238.028910,
+ 'Np': 237.000000,
+ 'Pu': 244.000000,
+ 'Am': 243.000000,
+ 'Cm': 247.000000,
+ 'Bk': 247.000000,
+ 'Cf': 251.000000,
+ 'Es': 252.000000,
+ 'Fm': 257.000000,
+ 'Md': 258.000000,
+ 'No': 259.000000,
+ 'Lr': 262.000000,
+ 'Rf': 261.000000,
+ 'Db': 262.000000,
+ 'Sg': 266.000000,
+ 'Bh': 264.000000,
+ 'Hs': 277.000000,
+ 'Mt': 268.000000,
+ 'Ds': 281.000000,
+ 'Rg': 272.000000,
+ 'Cn': 285.000000,
+ 'Uuq': 289.000000,
+ 'Uuh': 292.000000
+}
diff --git a/cobra/core/Gene.py b/cobra/core/Gene.py
new file mode 100644
index 0000000..3396bf1
--- /dev/null
+++ b/cobra/core/Gene.py
@@ -0,0 +1,95 @@
+import re
+from warnings import warn
+
+from .Species import Species
+
+
+class Gene(Species):
+
+ """A Gene is a special class of metabolite.
+
+
+ TODO: Make design decisions about TUs and such
+ """
+
+ def __init__(self, id, formula=None,
+ name=None, compartment=None, strand='+',
+ locus_start=0, locus_end=0, functional=True):
+ """
+ id: A string.
+
+ formula: cobra.Formula or a chemical formula str. Defaults to None
+ to save time in pickling and such.
+
+ name: String. A human readable name.
+
+ compartment: None or a dictionary indicating the cellular location
+ of the metabolite. Used when in a cobra.Reaction or Model
+ object
+
+ strand: '+' or '-' to indicate forward or reverse strand for DNA.
+
+ locus_start: Int. The index of the starting base for the gene.
+
+ locus_end: Int. The index of the last base for the gene.
+
+ functional: Boolean. Indicate whether the gene is functional. If it
+ is not functional then it cannot be used in an enzyme complex nor
+ can its products be used.
+
+ """
+ Species.__init__(self, id, formula=formula,
+ name=name, compartment=compartment)
+ self.locus_start = locus_start
+ self.locus_end = locus_end
+ self.strand = strand
+ self.functional = functional
+
+ def remove_from_model(self, model=None,
+ make_dependent_reactions_nonfunctional=True):
+ """Removes the association
+
+ make_dependent_reactions_nonfunctional: Boolean. If True then replace
+ the gene with 'False' in the gene association, else replace the gene
+ with 'True'
+
+ .. note :: Simulating gene knockouts is much better handled by
+ cobra.manipulation.delete_model_genes
+
+ """
+ if model is not None:
+ warn("passing the model in is unnecessary and deprecated")
+ if model != self._model:
+ raise Exception("%s is a member of %s, not %s" %
+ (repr(self), repr(self._model), repr(model)))
+ if self._model is None:
+ raise Exception('%s is not in a model' % repr(self))
+
+ if make_dependent_reactions_nonfunctional:
+ gene_state = 'False'
+ else:
+ gene_state = 'True'
+ the_gene_re = re.compile('(^|(?<=( |\()))%s(?=( |\)|$))' %
+ re.escape(self.id))
+
+ self._model.genes.remove(self)
+ self._model = None
+
+ for the_reaction in list(self._reaction):
+ the_reaction._gene_reaction_rule = the_gene_re.sub(
+ gene_state, the_reaction.gene_reaction_rule)
+ the_reaction._genes.remove(self)
+ # Now, deactivate the reaction if its gene association evaluates
+ # to False
+ the_gene_reaction_relation = the_reaction.gene_reaction_rule
+ for other_gene in the_reaction._genes:
+ other_gene_re = re.compile('(^|(?<=( |\()))%s(?=( |\)|$))' %
+ re.escape(other_gene.id))
+ the_gene_reaction_relation = other_gene_re.sub(
+ 'True',
+ the_gene_reaction_relation)
+
+ if not eval(the_gene_reaction_relation):
+ the_reaction.lower_bound = 0
+ the_reaction.upper_bound = 0
+ self._reaction.clear()
diff --git a/cobra/core/Metabolite.py b/cobra/core/Metabolite.py
new file mode 100644
index 0000000..75093ec
--- /dev/null
+++ b/cobra/core/Metabolite.py
@@ -0,0 +1,77 @@
+from warnings import warn
+
+from .Species import Species
+
+
+class Metabolite(Species):
+ """Metabolite is a class for holding information regarding
+ a metabolite in a cobra.Reaction object.
+
+ """
+
+ def __init__(self, id=None, formula=None,
+ name=None, compartment=None):
+ """
+ id: str
+
+ formula: cobra.Formula or String of a chemical formula.
+
+ name: str
+ A human readable name.
+
+ compartment: None or a dictionary indicating the cellular location
+ of the metabolite. Used when in a cobra.Reaction or Model
+ object
+
+ """
+ Species.__init__(self, id, formula, name, compartment)
+ self._constraint_sense = 'E'
+ self._bound = 0.
+
+ @property
+ def y(self):
+ """The shadow price for the metabolite in the most recent solution
+
+ Shadow prices are computed from the dual values of the bounds in
+ the solution.
+
+ """
+ try:
+ return self._model.solution.y_dict[self.id]
+ except Exception as e:
+ if self._model is None:
+ raise Exception("not part of a model")
+ if not hasattr(self._model, "solution") or \
+ self._model.solution is None or \
+ self._model.solution.status == "NA":
+ raise Exception("model has not been solved")
+ if self._model.solution.status != "optimal":
+ raise Exception("model solution was not optimal")
+ raise e # Not sure what the exact problem was
+
+ def remove_from_model(self, method='subtractive', **kwargs):
+ """Removes the association from self.model
+
+ method: 'subtractive' or 'destructive'.
+ If 'subtractive' then the metabolite is removed from all
+ associated reactions. If 'destructive' then all associated
+ reactions are removed from the Model.
+
+ """
+ # why is model being taken in as a parameter? This plays
+ # back to the question of allowing a Metabolite to be associated
+ # with multiple Models
+ if "model" in kwargs:
+ warn("model argument deprecated")
+
+ self._model.metabolites.remove(self)
+ self._model = None
+ if method.lower() == 'subtractive':
+ for the_reaction in list(self._reaction):
+ the_coefficient = the_reaction._metabolites[self]
+ the_reaction.subtract_metabolites({self: the_coefficient})
+ elif method.lower() == 'destructive':
+ for x in self._reaction():
+ x.remove_from_model()
+ else:
+ raise Exception(method + " is not 'subtractive' or 'destructive'")
diff --git a/cobra/core/Model.py b/cobra/core/Model.py
new file mode 100644
index 0000000..72b0ec8
--- /dev/null
+++ b/cobra/core/Model.py
@@ -0,0 +1,383 @@
+from warnings import warn
+from copy import deepcopy, copy
+
+from ..external.six import iteritems, string_types
+from ..solvers import optimize
+from .Object import Object
+from .Solution import Solution
+from .DictList import DictList
+
+
+# Note, when a reaction is added to the Model it will no longer keep personal
+# instances of its Metabolites, it will reference Model.metabolites to improve
+# performance. When doing this, take care to monitor metabolite coefficients.
+# Do the same for Model.reactions[:].genes and Model.genes
+
+class Model(Object):
+ """Metabolic Model
+
+ Refers to Metabolite, Reaction, and Gene Objects.
+ """
+
+ def __setstate__(self, state):
+ """Make sure all cobra.Objects in the model point to the model"""
+ self.__dict__.update(state)
+ for y in ['reactions', 'genes', 'metabolites']:
+ for x in getattr(self, y):
+ x._model = self
+
+ def __init__(self, description=None):
+ if isinstance(description, Model):
+ self.__dict__ = description.__dict__
+ else:
+ Object.__init__(self, description)
+ self.description = self.id
+ self._trimmed = False
+ self._trimmed_genes = []
+ self._trimmed_reactions = {}
+ self.genes = DictList()
+ self.reactions = DictList() # A list of cobra.Reactions
+ self.metabolites = DictList() # A list of cobra.Metabolites
+ # genes based on their ids {Gene.id: Gene}
+ self.compartments = {}
+ self.solution = Solution(None)
+
+ def __add__(self, other_model):
+ """Adds two models. +
+
+ The issue of reactions being able to exists in multiple Models now
+ arises, the same for metabolites and such. This might be a little
+ difficult as a reaction with the same name / id in two models might
+ have different coefficients for their metabolites due to pH and whatnot
+ making them different reactions.
+
+ """
+ new_model = self.copy()
+ new_reactions = deepcopy(other_model.reactions)
+ new_model.add_reactions(new_reactions)
+ new_model.id = self.id + '_' + other_model.id
+ return new_model
+
+ def __iadd__(self, other_model):
+ """Adds a Model to this model +=
+
+ The issue of reactions being able to exists in multiple Models now
+ arises, the same for metabolites and such. This might be a little
+ difficult as a reaction with the same name / id in two models might
+ have different coefficients for their metabolites due to pH and whatnot
+ making them different reactions.
+
+ """
+ new_reactions = deepcopy(other_model.reactions)
+ self.add_reactions(new_reactions)
+ self.id = self.id + '_' + other_model.id
+ return self
+
+ def guided_copy(self):
+ """.. warning :: deprecated"""
+ warn("deprecated")
+ return self.copy()
+
+ def copy(self, print_time=False):
+ """Provides a partial 'deepcopy' of the Model. All of the Metabolite,
+ Gene, and Reaction objects are created anew but in a faster fashion
+ than deepcopy
+ """
+ if print_time is not False:
+ warn("print_time is a deprecated option")
+ new = self.__class__()
+ do_not_copy = {"metabolites", "reactions", "genes"}
+ for attr in self.__dict__:
+ if attr not in do_not_copy:
+ new.__dict__[attr] = self.__dict__[attr]
+
+ new.metabolites = DictList()
+ do_not_copy = {"_reaction", "_model"}
+ for metabolite in self.metabolites:
+ new_met = metabolite.__class__()
+ for attr, value in iteritems(metabolite.__dict__):
+ if attr not in do_not_copy:
+ new_met.__dict__[attr] = copy(
+ value) if attr == "formula" else value
+ new_met._model = new
+ new.metabolites.append(new_met)
+
+ new.genes = DictList()
+ for gene in self.genes:
+ new_gene = gene.__class__(None)
+ for attr, value in iteritems(gene.__dict__):
+ if attr not in do_not_copy:
+ new_gene.__dict__[attr] = copy(
+ value) if attr == "formula" else value
+ new_gene._model = new
+ new.genes.append(new_gene)
+
+ new.reactions = DictList()
+ do_not_copy = {"_model", "_metabolites", "_genes"}
+ for reaction in self.reactions:
+ new_reaction = reaction.__class__()
+ for attr, value in iteritems(reaction.__dict__):
+ if attr not in do_not_copy:
+ new_reaction.__dict__[attr] = value
+ new_reaction._model = new
+ new.reactions.append(new_reaction)
+ # update awareness
+ for metabolite, stoic in iteritems(reaction._metabolites):
+ new_met = new.metabolites.get_by_id(metabolite.id)
+ new_reaction._metabolites[new_met] = stoic
+ new_met._reaction.add(new_reaction)
+ for gene in reaction._genes:
+ new_gene = new.genes.get_by_id(gene.id)
+ new_reaction._genes.add(new_gene)
+ new_gene._reaction.add(new_reaction)
+ return new
+
+ def add_metabolites(self, metabolite_list):
+ """Will add a list of metabolites to the the object, if they do not
+ exist and then expand the stochiometric matrix
+
+ metabolite_list: A list of :class:`~cobra.core.Metabolite` objects
+
+ """
+ if not hasattr(metabolite_list, '__iter__'):
+ metabolite_list = [metabolite_list]
+ # First check whether the metabolites exist in the model
+ metabolite_list = [x for x in metabolite_list
+ if x.id not in self.metabolites]
+ for x in metabolite_list:
+ x._model = self
+ self.metabolites += metabolite_list
+
+ def _update_reaction(self, reaction):
+ """.. warning :: deprecated"""
+ warn("deprecated function")
+ if not hasattr(reaction, '__iter__'):
+ reaction = [reaction]
+ for the_reaction in reaction:
+ if the_reaction.id not in self.reactions:
+ warn(the_reaction.id + ' is not in the model')
+ continue
+ reaction_index = self.reactions.index(the_reaction.id)
+ self.reactions[reaction_index] = the_reaction
+
+ def update(self):
+ """.. warning :: removed"""
+ raise Exception("Model.update is moved to ArrayBasedModel.")
+
+ def add_reaction(self, reaction):
+ """Will add a cobra.Reaction object to the model, if
+ reaction.id is not in self.reactions.
+
+ reaction: A :class:`~cobra.core.Reaction` object
+
+ """
+ self.add_reactions([reaction])
+
+ def add_reactions(self, reaction_list):
+ """Will add a cobra.Reaction object to the model, if
+ reaction.id is not in self.reactions.
+
+ reaction_list: A list of :class:`~cobra.core.Reaction` objects
+
+ """
+ # Only add the reaction if one with the same ID is not already
+ # present in the model.
+
+ # This function really should not used for single reactions
+ if not hasattr(reaction_list, "__len__"):
+ reaction_list = [reaction_list]
+ warn("Use add_reaction for single reactions")
+
+ reaction_list = DictList(reaction_list)
+ reactions_in_model = [
+ i.id for i in reaction_list if self.reactions.has_id(
+ i.id)]
+
+ if len(reactions_in_model) > 0:
+ raise Exception("Reactions already in the model: " +
+ ", ".join(reactions_in_model))
+
+ # Add reactions. Also take care of genes and metabolites in the loop
+ for reaction in reaction_list:
+ reaction._model = self # the reaction now points to the model
+ # keys() is necessary because the dict will be modified during
+ # the loop
+ for metabolite in list(reaction._metabolites.keys()):
+ # if the metabolite is not in the model, add it
+ # should we be adding a copy instead.
+ if not self.metabolites.has_id(metabolite.id):
+ self.metabolites.append(metabolite)
+ metabolite._model = self
+ # this should already be the case. Is it necessary?
+ metabolite._reaction = set([reaction])
+ # A copy of the metabolite exists in the model, the reaction
+ # needs to point to the metabolite in the model.
+ else:
+ stoichiometry = reaction._metabolites.pop(metabolite)
+ model_metabolite = self.metabolites.get_by_id(
+ metabolite.id)
+ reaction._metabolites[model_metabolite] = stoichiometry
+ model_metabolite._reaction.add(reaction)
+
+ for gene in list(reaction._genes):
+ # If the gene is not in the model, add it
+ if not self.genes.has_id(gene.id):
+ self.genes.append(gene)
+ gene._model = self
+ # this should already be the case. Is it necessary?
+ gene._reaction = set([reaction])
+ # Otherwise, make the gene point to the one in the model
+ else:
+ model_gene = self.genes.get_by_id(gene.id)
+ if model_gene is not gene:
+ reaction._dissociate_gene(gene)
+ reaction._associate_gene(model_gene)
+
+ self.reactions += reaction_list
+
+ def to_array_based_model(self, deepcopy_model=False, **kwargs):
+ """Makes a :class:`~cobra.core.ArrayBasedModel` from a cobra.Model which
+ may be used to perform linear algebra operations with the
+ stoichiomatric matrix.
+
+ deepcopy_model: Boolean. If False then the ArrayBasedModel points
+ to the Model
+
+ """
+ from .ArrayBasedModel import ArrayBasedModel
+ return ArrayBasedModel(self, deepcopy_model=deepcopy_model, **kwargs)
+
+ def optimize(self, objective_sense='maximize', solver=None,
+ quadratic_component=None,
+ **kwargs):
+ r"""Optimize model using flux balance analysis
+
+ objective_sense: 'maximize' or 'minimize'
+
+ solver: 'glpk', 'cglpk', 'gurobi', 'cplex' or None
+
+ quadratic_component: None or :class:`scipy.sparse.dok_matrix`
+ The dimensions should be (n, n) where n is the number of reactions.
+
+ This sets the quadratic component (Q) of the objective coefficient,
+ adding :math:`\\frac{1}{2} v^T \cdot Q \cdot v` to the objective.
+
+ tolerance_feasibility: Solver tolerance for feasibility.
+
+ tolerance_markowitz: Solver threshold during pivot
+
+ time_limit: Maximum solver time (in seconds)
+
+ .. NOTE :: Only the most commonly used parameters are presented here.
+ Additional parameters for cobra.solvers may be available and
+ specified with the appropriate keyword argument.
+
+ """
+ if "new_objective" in kwargs:
+ warn("new_objective is deprecated. Use Model.change_objective")
+ self.change_objective(kwargs.pop("new_objective"))
+ if "error_reporting" in kwargs:
+ warn("error_reporting deprecated")
+ if quadratic_component is not None:
+ kwargs["quadratic_component"] = quadratic_component
+ the_solution = optimize(self, solver=solver,
+ objective_sense=objective_sense,
+ **kwargs)
+ self.solution = the_solution
+ return the_solution
+
+ def remove_reactions(self, reactions, delete=True,
+ remove_orphans=False):
+ """remove reactions from the model
+
+ reactions: [:class:`~cobra.core.Reaction.Reaction`] or [str]
+ The reactions (or their id's) to remove
+
+ delete: Boolean
+ Whether or not the reactions should be deleted after removal.
+ If the reactions are not deleted, those objects will be
+ recreated with new metabolite and gene objects.
+
+ remove_orphans: Boolean
+ Remove orphaned genes and metabolites from the model as well
+
+ """
+ if isinstance(reactions, string_types) or hasattr(reactions, "id"):
+ warn("need to pass in a list")
+ reactions = [reactions]
+ for reaction in reactions:
+ try:
+ reaction = self.reactions[self.reactions.index(reaction)]
+ except ValueError:
+ warn('%s not in %s' % (reaction, self))
+ else:
+ if delete:
+ reaction.delete(remove_orphans=remove_orphans)
+ else:
+ reaction.remove_from_model(remove_orphans=remove_orphans)
+
+ def repair(self, rebuild_index=True, rebuild_relationships=True):
+ """Update all indexes and pointers in a model"""
+ if rebuild_index: # DictList indexes
+ self.reactions._generate_index()
+ self.metabolites._generate_index()
+ self.genes._generate_index()
+ if rebuild_relationships:
+ for met in self.metabolites:
+ met._reaction.clear()
+ for gene in self.genes:
+ gene._reaction.clear()
+ for rxn in self.reactions:
+ for met in rxn._metabolites:
+ met._reaction.add(rxn)
+ for gene in rxn._genes:
+ gene._reaction.add(rxn)
+ # point _model to self
+ for l in (self.reactions, self.genes, self.metabolites):
+ for e in l:
+ e._model = self
+ if self.solution is None:
+ self.solution = Solution(None)
+ return
+
+ def change_objective(self, objectives):
+ """Change the objective in the cobrapy model.
+
+ objectives: A list or a dictionary. If a list then
+ a list of reactions for which the coefficient in the
+ linear objective is set as 1. If a dictionary then the
+ key is the reaction and the value is the linear coefficient
+ for the respective reaction.
+
+ """
+ # I did not want to refactor code just to rename the variable, but this
+ # way the API uses the variable "objectives"
+ the_objectives = objectives
+ # set all objective coefficients to 0 initially
+ for x in self.reactions:
+ x.objective_coefficient = 0.
+ # update the objective coefficients if a dict is passed in
+ if hasattr(the_objectives, "items"):
+ for the_reaction, the_coefficient in iteritems(the_objectives):
+ if isinstance(the_reaction, int):
+ the_reaction = self.reactions[the_reaction]
+ else:
+ if hasattr(the_reaction, 'id'):
+ the_reaction = the_reaction.id
+ the_reaction = self.reactions.get_by_id(the_reaction)
+ the_reaction.objective_coefficient = the_coefficient
+ # If a list (or a single reaction is passed in), each reaction gets
+ # 1 for the objective coefficent.
+ else:
+ # Allow for objectives to be constructed from multiple reactions
+ if not hasattr(the_objectives, "__iter__") or \
+ isinstance(the_objectives, string_types):
+ the_objectives = [the_objectives]
+ for the_reaction in the_objectives:
+ if isinstance(the_reaction, int):
+ the_reaction = self.reactions[the_reaction]
+ else:
+ if hasattr(the_reaction, 'id'):
+ the_reaction = the_reaction.id
+ the_reaction = self.reactions.get_by_id(the_reaction)
+ the_reaction.objective_coefficient = 1.
diff --git a/cobra/core/Object.py b/cobra/core/Object.py
new file mode 100644
index 0000000..0b9eebb
--- /dev/null
+++ b/cobra/core/Object.py
@@ -0,0 +1,64 @@
+from ..external.six import iteritems
+
+
+class Object(object):
+ """Defines common behavior of object in cobra.core"""
+
+ def __init__(self, id=None, mnx_id=None):
+ """
+ id: None or a string
+
+ mnx_id: None or a String of the MetaNetX.org ID for the Object
+ """
+ self.id = id
+ self.mnx_id = mnx_id
+ # The following two fields will eventually
+ # be objects that enforce basic rules about
+ # formatting notes and annotation
+ self.notes = {}
+ self.annotation = {}
+
+ def __getstate__(self):
+ """To prevent excessive replication during deepcopy."""
+ state = self.__dict__.copy()
+ if '_model' in state:
+ state['_model'] = None
+ return state
+
+ def guided_copy(self):
+ """.. deprecated :: 0.3 use copy direclty"""
+ the_copy = self.__class__(self.id)
+ for k, v in iteritems(self.__dict__):
+ # Don't try to set properties
+ if not isinstance(getattr(type(self), k, None), property):
+ setattr(the_copy, k, v)
+ return(the_copy)
+
+ def _copy_parent_attributes(self, gene_object):
+ """Helper function for shallow copying attributes from a parent object
+ into a new child object.
+
+ """
+ for k, v in iteritems(gene_object.__dict__):
+ setattr(self, k, v)
+
+ def startswith(self, x):
+ return self.id.startswith(x)
+
+ def endswith(self, x):
+ return self.id.endswith(x)
+
+ def __contains__(self, x):
+ return self.id.__contains__(x)
+
+ def __getitem__(self, index):
+ return self.id[index]
+
+ def __getslice__(self, i, j):
+ return self.id[i:j]
+
+ def __repr__(self):
+ return "<%s %s at 0x%x>" % (self.__class__.__name__, self.id, id(self))
+
+ def __str__(self):
+ return str(self.id)
diff --git a/cobra/core/Reaction.py b/cobra/core/Reaction.py
new file mode 100644
index 0000000..cc07931
--- /dev/null
+++ b/cobra/core/Reaction.py
@@ -0,0 +1,723 @@
+from __future__ import print_function
+
+from collections import defaultdict
+import re
+from copy import copy, deepcopy
+from warnings import warn
+
+from ..external.six import string_types, iteritems
+
+from .Object import Object
+from .Gene import Gene
+from .Metabolite import Metabolite
+
+
+class Frozendict(dict):
+ """Read-only dictionary view"""
+
+ def __setitem__(self, key, value):
+ raise NotImplementedError("read-only")
+
+ def __delitem__(self, key):
+ raise NotImplementedError("read-only")
+
+ def pop(self, key, value):
+ raise NotImplementedError("read-only")
+
+ def popitem(self):
+ raise NotImplementedError("read-only")
+
+
+# precompiled regular expressions
+# Matches and/or in a gene reaction rule
+and_or_search = re.compile(r'\(| and| or|\+|\)', re.IGNORECASE)
+# This regular expression finds any single letter compartment enclosed in
+# square brackets at the beginning of the string. For example [c] : foo --> bar
+compartment_finder = re.compile("^\s*(\[[A-Za-z]\])\s*:*")
+# Regular expressions to match the arrows
+_reversible_arrow_finder = re.compile("<(-+|=+)>")
+_forward_arrow_finder = re.compile("(-+|=+)>")
+_reverse_arrow_finder = re.compile("<(-+|=+)")
+
+
+class Reaction(Object):
+ """Reaction is a class for holding information regarding
+ a biochemical reaction in a cobra.Model object
+
+ """
+
+ def __init__(self, name=None):
+ """An object for housing reactions and associated information
+ for cobra modeling.
+
+ """
+ Object.__init__(self, name)
+ self._gene_reaction_rule = ''
+ self.subsystem = ''
+ # The cobra.Genes that are used to catalyze the reaction
+ self._genes = set()
+ # A dictionary of metabolites and their stoichiometric coefficients in
+ # this reaction.
+ self._metabolites = {}
+ self.name = name
+ # self.model is None or refers to the cobra.Model that
+ # contains self
+ self._model = None
+
+ self.objective_coefficient = self.lower_bound = 0.
+ self.upper_bound = 1000.
+ # Either None or if this reaction is irreversible then
+ self.reflection = None
+ # a reaction in the model that is essentially self * -1
+ # Used during optimization. Indicates whether the
+ self.variable_kind = 'continuous'
+ # variable is modeled as continuous, integer, binary, semicontinous, or
+ # semiinteger.
+
+ # read-only
+ @property
+ def metabolites(self):
+ return Frozendict(self._metabolites)
+
+ @property
+ def genes(self):
+ return frozenset(self._genes)
+
+ @property
+ def gene_reaction_rule(self):
+ return self._gene_reaction_rule
+
+ @gene_reaction_rule.setter
+ def gene_reaction_rule(self, new_rule):
+ self._gene_reaction_rule = new_rule
+ gene_names = set((re.compile(' {2,}').sub(
+ ' ', and_or_search.sub('', self._gene_reaction_rule))).split(' '))
+ if '' in gene_names:
+ gene_names.remove('')
+ old_genes = self._genes
+ if self._model is None:
+ self._genes = {Gene(i) for i in gene_names}
+ else:
+ model_genes = self._model.genes
+ self._genes = set()
+ for id in gene_names:
+ if model_genes.has_id(id):
+ self._genes.add(model_genes.get_by_id(id))
+ else:
+ new_gene = Gene(id)
+ new_gene._model = self._model
+ self._genes.add(new_gene)
+ model_genes.append(new_gene)
+
+ # Make the genes aware that it is involved in this reaction
+ for g in self._genes:
+ g._reaction.add(self)
+
+ # make the old genes aware they are no longer involved in this reaction
+ for g in old_genes:
+ if g not in self._genes: # if an old gene is not a new gene
+ try:
+ g._reaction.remove(self)
+ except:
+ warn("could not remove old gene %s from reaction %s" %
+ (g.id, self.id))
+
+ @property
+ def x(self):
+ """The flux through the reaction in the most recent solution
+
+ Flux values are computed from the primal values of the variables in
+ the solution.
+
+ """
+ try:
+ return self._model.solution.x_dict[self.id]
+ except Exception as e:
+ if self._model is None:
+ raise Exception("not part of a model")
+ if not hasattr(self._model, "solution") or \
+ self._model.solution is None or \
+ self._model.solution.status == "NA":
+ raise Exception("model has not been solved")
+ if self._model.solution.status != "optimal":
+ raise Exception("model solution was not optimal")
+ raise e # Not sure what the exact problem was
+
+ @property
+ def reversibility(self):
+ """Whether the reaction can proceed in both directions (reversible)
+
+ This is computed from the current upper and lower bounds.
+
+ """
+ return self.lower_bound < 0 and self.upper_bound > 0
+
+ @reversibility.setter
+ def reversibility(self, value):
+ warn("Setting reaction reversibility is ignored")
+
+ @property
+ def boundary(self):
+ # single metabolite implies it must be a boundary
+ if len(self._metabolites) == 1:
+ return "system_boundary"
+ # if there is more than one metabolite, if it ONLY produces or ONLY
+ # consumes, it is also a boundary.
+ all_stoichiometry = self._metabolites.values()
+ if not min(all_stoichiometry) < 0 < max(all_stoichiometry):
+ return "system_boundary"
+ return None
+
+ @property
+ def model(self):
+ """returns the model the reaction is a part of"""
+ return self._model
+
+ def _update_awareness(self):
+ """Make sure all metabolites and genes that are associated with
+ this reaction are aware of it.
+
+ """
+ for x in self._metabolites:
+ x._reaction.add(self)
+ for x in self._genes:
+ x._reaction.add(self)
+
+ def get_model(self):
+ """.. deprecated :: 0.3.1 use model property instead"""
+ warn("deprecated, use the model property instead")
+ return self._model
+
+ def remove_from_model(self, model=None, remove_orphans=False):
+ """Removes the reaction from the model while keeping it intact
+
+ remove_orphans: Boolean
+ Remove orphaned genes and metabolites from the model as well
+
+ model: deprecated argument, must be None
+
+ """
+ if model is not None:
+ warn("model does not need to be passed into remove_from_model")
+ if model != self._model:
+ raise Exception("Can not remove from a different model")
+ if self._model is None:
+ raise Exception("Reaction %s not in a model" % self.id)
+ # preserve the original attributes (but as copies)
+ model = self._model
+ new_metabolites = {copy(met): value
+ for met, value in iteritems(self._metabolites)}
+ new_genes = {copy(i) for i in self._genes}
+ # Begin removing from the model
+ self._model = None
+ model.reactions.remove(self)
+ for x in self._metabolites:
+ x._reaction.remove(self)
+ if remove_orphans and len(x._reaction) == 0:
+ model.metabolites.remove(x)
+ for x in self._genes:
+ x._reaction.remove(self)
+ if remove_orphans and len(x._reaction) == 0:
+ model.genes.remove(x)
+ # Rebuild the model with the new independent genes/metabolites
+ self._metabolites = {}
+ self.add_metabolites(new_metabolites)
+ self._genes = set()
+ for k in new_genes:
+ self._associate_gene(k)
+
+ def delete(self, remove_orphans=False):
+ """Completely delete a reaction
+
+ This removes all associations between a reaction the associated
+ model, metabolites and genes (unlike remove_from_model which only
+ dissociates the reaction from the model).
+
+ remove_orphans: Boolean
+ Remove orphaned genes and metabolites from the model as well
+
+ """
+ model = self._model
+ if model is not None:
+ self._model.reactions.remove(self)
+ elif remove_orphans:
+ # can't remove orphans if not part of a model
+ remove_orphans = False
+ self._model = None
+ for x in self._metabolites:
+ if self in x._reaction:
+ x._reaction.remove(self)
+ if remove_orphans and len(x._reaction) == 0:
+ model.metabolites.remove(x)
+ for x in self._genes:
+ if self in x._reaction:
+ x._reaction.remove(self)
+ if remove_orphans and len(x._reaction) == 0:
+ model.genes.remove(x)
+ self._metabolites = {}
+ self._genes = set()
+
+ def __setstate__(self, state):
+
+ """Probably not necessary to set _model as the cobra.Model that
+ contains self sets the _model attribute for all metabolites and genes
+ in the reaction.
+
+ However, to increase performance speed we do want to let the metabolite
+ and gene know that they are employed in this reaction
+
+ """
+ # These are necessary for old pickles which store attributes
+ # which have since been superceded by properties.
+ if "reaction" in state:
+ state.pop("reaction")
+ if "gene_reaction_rule" in state:
+ state["_gene_reaction_rule"] = state.pop("gene_reaction_rule")
+
+ self.__dict__.update(state)
+ for x in state['_metabolites']:
+ setattr(x, '_model', self._model)
+ x._reaction.add(self)
+ for x in state['_genes']:
+ setattr(x, '_model', self._model)
+ x._reaction.add(self)
+
+ def copy(self):
+ """When copying a reaction, it is necessary to deepcopy the
+ components so the list references aren't carried over.
+
+ Additionally, a copy of a reaction is no longer in a cobra.Model.
+
+ This should be fixed with self.__deecopy__ if possible
+ """
+ # the_model = self._model
+ # self._model = None
+ new_reaction = deepcopy(self)
+ # self._model = the_model
+ return new_reaction
+
+ def guided_copy(self, the_model, metabolite_dict, gene_dict=None):
+ """.. deprecated :: 0.3 use copy directly"""
+ warn("deprecated")
+ the_copy = Object.guided_copy(self)
+ # Replace the complex items in a faster fashion
+ the_copy._model = the_model
+ if gene_dict:
+ the_copy._genes = set([gene_dict[k.id]
+ for k in self._genes])
+ the_copy._metabolites = {metabolite_dict[k.id]: v
+ for k, v in iteritems(self._metabolites)}
+
+ # make the metabolites and genes aware of the reaction
+ [k._reaction.add(the_copy)
+ for k in the_copy._genes]
+ [k._reaction.add(the_copy)
+ for k in the_copy._metabolites.keys()]
+
+ return(the_copy)
+
+ def pop(self, metabolite_id):
+ """Remove a metabolite from the reaction and return the
+ stoichiometric coefficient.
+
+ metabolite_id: str or :class:`~cobra.core.Metabolite.Metabolite`
+
+ """
+ the_metabolite = metabolite_id
+ if isinstance(the_metabolite, string_types):
+ found_match = None
+ for possible_match in self._metabolites:
+ if possible_match.id == the_metabolite:
+ found_match = possible_match
+ break
+ if found_match is None:
+ raise KeyError(
+ "No metabolite named %s in the reaction" % the_metabolite)
+ else:
+ the_metabolite = found_match
+ the_coefficient = self._metabolites.pop(the_metabolite)
+ the_metabolite._reaction.remove(self)
+ return the_coefficient
+
+ def __add__(self, other_reaction):
+ """Adds two reactions to each other. Default behavior is
+ to combine the metabolites but only use the remaining parameters
+ from the first object.
+
+ TODO: Either clean up metabolite associations or remove function
+
+ TODO: Deal with gene association logic from adding reactions.
+
+ TODO: Simplify and add in an __iadd__
+
+ """
+ new_reaction = deepcopy(self)
+ new_reaction.id = self.id + '_' + other_reaction.id
+ new_reaction.add_metabolites(deepcopy(other_reaction._metabolites))
+ new_reaction._genes.update(deepcopy(other_reaction._genes))
+ # Make all the genes aware of this reaction
+ [x._reaction.add(new_reaction) for x in new_reaction._genes]
+ gpr_1 = new_reaction.gene_reaction_rule
+ gpr_2 = other_reaction.gene_reaction_rule
+ if gpr_1 != '' and gpr_2 != '':
+ new_reaction.gene_reaction_rule = '%s and %s' % (gpr_1, gpr_2)
+ elif gpr_2 != '':
+ new_reaction.gene_reaction_rule = gpr_2
+ return new_reaction
+
+ def __sub__(self, other_reaction):
+ """Subtracts two reactions. Default behavior is
+ to combine the metabolites but only use the remaining parameters
+ from the first object.
+
+ Note: This is equivalent to adding reactions after changing the sign
+ of the metabolites in other_reaction
+
+ """
+ new_reaction = deepcopy(self)
+ if self is other_reaction:
+ other_reaction = deepcopy(other_reaction)
+ new_reaction.id = self.id + '_' + other_reaction.id
+ new_reaction.subtract_metabolites(
+ deepcopy(other_reaction._metabolites))
+ return new_reaction
+
+ def __imul__(self, the_coefficient):
+ """Allows the reaction coefficients to be rapidly scaled.
+
+ """
+ self._metabolites = {k: the_coefficient * v for k, v in
+ iteritems(self._metabolites)}
+ return self
+
+ def __mul__(self, the_coefficient):
+ """Allows a reaction to be multiplied by a coefficient.
+
+ TODO: this should return a new reaction.
+
+ """
+ self *= the_coefficient
+ return self
+
+ def parse_gene_association(self, **kwargs):
+ """.. deprecated :: 0.3 Set gene_reaction_rule directly"""
+ warn("deprecated function")
+ # trigger the update if that was the desired behavior for some reason
+ self.gene_reaction_rule = self._gene_reaction_rule
+
+ def add_gene_reaction_rule(self, the_rule):
+ """.. deprecated :: 0.3 Set gene_reaction_rule directly"""
+ self.gene_reaction_rule = the_rule
+ warn("deprecated, assign to gene_reaction_rule directly")
+
+ def get_reactants(self):
+ """.. deprecated :: 0.3 use reactants property instead"""
+ warn("deprecated, use the reactants property instead")
+ return self.reactants
+
+ @property
+ def reactants(self):
+ """Return a list of reactants for the reaction."""
+ return [k for k, v in self._metabolites.items() if v < 0]
+
+ def get_products(self):
+ """.. deprecated :: 0.3 use products property instead"""
+ warn("depreacated, use the products property instead")
+ return self.products
+
+ @property
+ def products(self):
+ """Return a list of products for the reaction"""
+ return [k for k, v in self._metabolites.items() if v > 0]
+
+ def get_gene(self):
+ """.. deprecated :: 0.3 use genes property instead"""
+ warn("deprecated, use the genes property instead")
+ return list(self._genes)
+
+ def get_coefficient(self, metabolite_id):
+ """Return the stoichiometric coefficient for a metabolite in
+ the reaction.
+
+ metabolite_id: str or :class:`~cobra.core.Metabolite.Metabolite`
+
+ """
+ _id_to_metabolites = dict([(x.id, x)
+ for x in self._metabolites])
+
+ if hasattr(metabolite_id, 'id'):
+ metabolite_id = metabolite_id.id
+ return self._metabolites[_id_to_metabolites[metabolite_id]]
+
+ def get_coefficients(self, metabolite_ids):
+ """Return the stoichiometric coefficients for a list of
+ metabolites in the reaction.
+
+ metabolite_ids: iterable
+ Containing str or :class:`~cobra.core.Metabolite.Metabolite`
+
+ """
+ return map(self.get_coefficient, metabolite_ids)
+
+ def add_metabolites(self, metabolites, combine=True,
+ add_to_container_model=True):
+ """Add metabolites and stoichiometric coefficients to the reaction.
+ If the final coefficient for a metabolite is 0 then it is removed
+ from the reaction.
+
+ metabolites: dict
+ {:class:`~cobra.core.Metabolite.Metabolite`: coefficient}
+
+ combine: Boolean.
+ Describes behavior a metabolite already exists in the reaction.
+ True causes the coefficients to be added.
+ False causes the coefficient to be replaced.
+ True and a metabolite already exists in the
+
+ add_to_container_model: Boolean.
+ Add the metabolite to the :class:`~cobra.core.Model.Model`
+ the reaction is associated with (i.e. self.model)
+
+ """
+ _id_to_metabolites = {x.id: x for x in self._metabolites}
+ new_metabolites = []
+ for metabolite, coefficient in iteritems(metabolites):
+ # If a metabolite already exists in the reaction then
+ # just add them.
+ if metabolite.id in _id_to_metabolites:
+ reaction_metabolite = _id_to_metabolites[metabolite.id]
+ if combine:
+ self._metabolites[reaction_metabolite] += coefficient
+ else:
+ self._metabolites[reaction_metabolite] = coefficient
+ else:
+ # If the reaction is in a model, ensure we aren't using
+ # a duplicate metabolite.
+ try:
+ metabolite = \
+ self._model.metabolites.get_by_id(metabolite.id)
+ except:
+ new_metabolites.append(metabolite)
+ self._metabolites[metabolite] = coefficient
+ # make the metabolite aware that it is involved in this
+ # reaction
+ metabolite._reaction.add(self)
+ for metabolite, the_coefficient in list(self._metabolites.items()):
+ if the_coefficient == 0:
+ # make the metabolite aware that it no longer participates
+ # in this reaction
+ metabolite._reaction.remove(self)
+ self._metabolites.pop(metabolite)
+ if add_to_container_model and hasattr(self._model, 'add_metabolites'):
+ self._model.add_metabolites(new_metabolites)
+
+ def subtract_metabolites(self, metabolites):
+ """This function will 'subtract' metabolites from a reaction, which
+ means add the metabolites with -1*coefficient. If the final coefficient
+ for a metabolite is 0 then the metabolite is removed from the reaction.
+
+ metabolites: dict of {:class:`~cobra.core.Metabolite`: coefficient}
+ These metabolites will be added to the reaction
+
+ .. note:: A final coefficient < 0 implies a reactant.
+
+ """
+ self.add_metabolites({k: -v for k, v in iteritems(metabolites)})
+
+ def clear_metabolites(self):
+ """Remove all metabolites from the reaction"""
+ for metabolite in list(self._metabolites.keys()):
+ self.pop(metabolite)
+
+ @property
+ def reaction(self):
+ """Human readable reaction string"""
+ return self.build_reaction_string()
+
+ @reaction.setter
+ def reaction(self, value):
+ return self.build_reaction_from_string(value)
+
+ def build_reaction_string(self, use_metabolite_names=False):
+ """Generate a human readable reaction string"""
+ def format(number):
+ return "" if number == 1 else str(number).rstrip(".") + " "
+ reactant_dict = {}
+ product_dict = {}
+ id_type = 'id'
+ if use_metabolite_names:
+ id_type = 'name'
+ reactant_bits = []
+ product_bits = []
+ for the_metabolite, coefficient in iteritems(self._metabolites):
+ name = str(getattr(the_metabolite, id_type))
+ if coefficient > 0:
+ product_bits.append(format(coefficient) + name)
+ else:
+ reactant_bits.append(format(abs(coefficient)) + name)
+
+ reaction_string = ' + '.join(reactant_bits)
+ if not self.reversibility:
+ if self.lower_bound < 0 and self.upper_bound <= 0:
+ reaction_string += ' <-- '
+ else:
+ reaction_string += ' --> '
+ else:
+ reaction_string += ' <=> '
+ reaction_string += ' + '.join(product_bits)
+ return reaction_string
+
+ def check_mass_balance(self):
+ """Makes sure that the reaction is elementally-balanced."""
+ reaction_element_dict = defaultdict(list)
+ for the_metabolite, the_coefficient in self._metabolites.items():
+ if the_metabolite.formula is not None:
+ for k, v in the_metabolite.formula.elements.items():
+ reaction_element_dict[k].append(the_coefficient * v)
+ reaction_element_dict = {k: sum(v) for k, v
+ in reaction_element_dict.items()}
+ if sum(map(abs, reaction_element_dict.values())) != 0:
+ return [self.id, reaction_element_dict]
+ else:
+ return []
+
+ def print_values(self):
+ """.. deprecated :: 0.3"""
+ warn("deprecated")
+ print("reaction:", self.id)
+ print("subsystem", self.subsystem)
+ print(self.reaction)
+ print("bounds: (%.2f, %.2f)" % (self.lower_bound, self.upper_bound))
+ print("objective_coefficient", self.objective_coefficient)
+ print("gene reaction rule:", self.gene_reaction_rule)
+
+ def get_compartments(self):
+ """
+ """
+ return(list(set([x.compartment for x in self._metabolites])))
+
+ def remove_gene(self, cobra_gene):
+ """.. deprecated :: 0.3 update the gene_reaction_rule instead"""
+ warn("deprecated: update the gene_reaction_rule instead")
+ try:
+ self._genes.remove(cobra_gene)
+ cobra_gene._reaction.remove(self)
+ except Exception as e:
+ try:
+ if hasattr(self._genes, 'keys'):
+ self._genes = set(self._genes.keys())
+ self.remove_gene(cobra_gene)
+ except:
+ raise Exception('Unable to remove %s from %s: %s' %
+ (repr(cobra_gene), repr(self), e))
+
+ def add_gene(self, cobra_gene):
+ """.. deprecated :: 0.3 update the gene_reaction_rule instead"""
+ warn("deprecated: update the gene_reaction_rule instead")
+ try:
+ self._genes.add(cobra_gene)
+ cobra_gene._reaction.add(self)
+ cobra_gene._model = self._model
+ except Exception as e:
+ try:
+ if hasattr(self._genes, 'keys'):
+ self._genes = set(self._genes.keys())
+ self.add_gene(cobra_gene)
+ except:
+ raise Exception('Unable to add %s to %s: %s' %
+ (repr(cobra_gene), repr(self), e))
+
+ def _associate_gene(self, cobra_gene):
+ """Associates a cobra.Gene object with a cobra.Reaction.
+
+ cobra_gene : :class:`~cobra.core.Gene.Gene`
+
+ """
+ self._genes.add(cobra_gene)
+ cobra_gene._reaction.add(self)
+ cobra_gene._model = self._model
+
+ def _dissociate_gene(self, cobra_gene):
+ """Dissociates a cobra.Gene object with a cobra.Reaction.
+
+ cobra_gene : :class:`~cobra.core.Gene.Gene`
+
+ """
+ self._genes.remove(cobra_gene)
+ cobra_gene._reaction.remove(self)
+
+ def knock_out(self):
+ """Change the upper and lower bounds of the reaction to 0."""
+ self.lower_bound = 0
+ self.upper_bound = 0
+
+ def build_reaction_from_string(self, reaction_str, verbose=True,
+ fwd_arrow=None, rev_arrow=None,
+ reversible_arrow=None):
+ # set the arrows
+ forward_arrow_finder = _forward_arrow_finder if fwd_arrow is None \
+ else re.compile(re.escape(fwd_arrow))
+ reverse_arrow_finder = _reverse_arrow_finder if rev_arrow is None \
+ else re.compile(re.escape(rev_arrow))
+ reversible_arrow_finder = _reversible_arrow_finder \
+ if reversible_arrow is None \
+ else re.compile(re.escape(reversible_arrow))
+ if self._model is None:
+ warn("no model found")
+ model = None
+ else:
+ model = self._model
+ original_str = "" + reaction_str # copy
+ found_compartments = compartment_finder.findall(reaction_str)
+ if len(found_compartments) == 1:
+ compartment = found_compartments[0]
+ reaction_str = compartment_finder.sub("", reaction_str)
+ else:
+ compartment = ""
+
+ # reversible case
+ arrow_match = reversible_arrow_finder.search(reaction_str)
+ if arrow_match is not None:
+ self.lower_bound = -1000
+ self.upper_bound = 1000
+ else: # irreversible
+ # try forward
+ arrow_match = forward_arrow_finder.search(reaction_str)
+ if arrow_match is not None:
+ self.upper_bound = 1000
+ self.lower_bound = 0
+ else:
+ # must be reverse
+ arrow_match = reverse_arrow_finder.search(reaction_str)
+ if arrow_match is None:
+ raise ValueError("no suitable arrow found in '%s'" %
+ reaction_str)
+ else:
+ self.upper_bound = 0
+ self.lower_bound = -1000
+ reactant_str = reaction_str[:arrow_match.start()].strip()
+ product_str = reaction_str[arrow_match.end():].strip()
+
+ self.clear_metabolites()
+
+ for substr, factor in ((reactant_str, -1), (product_str, 1)):
+ if len(substr) == 0:
+ continue
+ for term in substr.split("+"):
+ term = term.strip()
+ if term.lower() == "nothing":
+ continue
+ if " " in term:
+ num_str, met_id = term.split()
+ num = float(num_str.lstrip("(").rstrip(")")) * factor
+ else:
+ met_id = term
+ num = factor
+ met_id += compartment
+ try:
+ met = model.metabolites.get_by_id(met_id)
+ except KeyError:
+ if verbose:
+ print("unknown metabolite '%s' created" % met_id)
+ met = Metabolite(met_id)
+ self.add_metabolites({met: num})
diff --git a/cobra/core/Solution.py b/cobra/core/Solution.py
new file mode 100644
index 0000000..a912ddd
--- /dev/null
+++ b/cobra/core/Solution.py
@@ -0,0 +1,39 @@
+class Solution(object):
+ """Stores the solution from optimizing a cobra.Model. This is
+ used to provide a single interface to results from different
+ solvers that store their values in different ways.
+
+ f: The objective value
+
+ solver: A string indicating which solver package was used.
+
+ x: List or Array of the values from the primal.
+
+ x_dict: A dictionary of reaction ids that maps to the primal values.
+
+ y: List or Array of the values from the dual.
+
+ y_dict: A dictionary of reaction ids that maps to the dual values.
+
+ """
+
+ def __init__(self, f, x=None,
+ x_dict=None, y=None, y_dict=None,
+ solver=None, the_time=0, status='NA'):
+ self.solver = solver
+ self.f = f
+ self.x = x
+ self.x_dict = x_dict
+ self.status = status
+ self.y = y
+ self.y_dict = y_dict
+
+ def dress_results(self, model):
+ """.. warning :: deprecated"""
+ from warning import warn
+ warn("unnecessary to call this deprecated function")
+
+ def __repr__(self):
+ if self.f is None:
+ return "<Solution '%s' at 0x%x>" % (self.status, id(self))
+ return "<Solution %.2f at 0x%x>" % (self.f, id(self))
diff --git a/cobra/core/Species.py b/cobra/core/Species.py
new file mode 100644
index 0000000..d167532
--- /dev/null
+++ b/cobra/core/Species.py
@@ -0,0 +1,103 @@
+from warnings import warn
+from copy import deepcopy
+from .Formula import Formula
+from .Object import Object
+
+
+class Species(Object):
+ """Species is a class for holding information regarding
+ a chemical Species
+
+
+ """
+
+ def __init__(self, id=None, formula=None,
+ name=None, compartment=None, mnx_id=None):
+ """
+ id: A string.
+
+ formula: cobra.Formula or str of a chemical formula. Defaults to None
+ to save time in pickling and such.
+
+ name: String. A human readable name.
+
+ compartment: None or a dictionary indicating the cellular location
+ of the metabolite. Used when in a cobra.Reaction or Model
+ object
+
+ mnx_id: None or a String of the MetaNetX.org ID for the object.
+
+ """
+ Object.__init__(self, id, mnx_id=mnx_id)
+ self.name = name
+ if not name:
+ self.name = self.id
+ if isinstance(formula, str):
+ formula = Formula(formula)
+
+ self.formula = formula
+ self.parse_composition()
+ # because in a Model a metabolite may participate in multiple Reactions
+ self.compartment = compartment
+ # self.model is None or refers to the cobra.Model that
+ # contains self
+ self._model = self.charge = None
+ # references to reactions that operate on this species
+ self._reaction = set()
+
+ @property
+ def reactions(self):
+ return frozenset(self._reaction)
+
+ def parse_composition(self):
+ """Breaks the chemical formula down by element.
+ Useful for making sure Reactions are balanced.'
+
+ """
+ if isinstance(self.formula, Formula):
+ self.formula.parse_composition()
+ elif isinstance(self.formula, str):
+ self.formula = Formula(self.formula)
+
+ def __getstate__(self):
+ """Remove the references to container reactions when serializing to
+ avoid problems associated with recursion.
+
+ """
+ state = Object.__getstate__(self)
+ state['_reaction'] = set()
+ return state
+
+ def copy(self):
+ """When copying a reaction, it is necessary to deepcopy the
+ components so the list references aren't carried over.
+
+ Additionally, a copy of a reaction is no longer in a cobra.Model.
+
+ This should be fixed with self.__deecopy__ if possible
+ """
+ return deepcopy(self)
+
+ def guided_copy(self, the_model):
+ """.. deprecated :: 0.3 Use copy directly"""
+ warn("deprecated")
+ the_copy = Object.guided_copy(self)
+ # Copy the more complex objects in a faster fashion
+ the_copy.formula = deepcopy(self.formula)
+ the_copy._model = the_model
+ the_copy._reaction = set()
+ return(the_copy)
+
+ def get_reaction(self):
+ """Returns a list of Reactions that contain this Species"""
+ warn("deprecated, used species.reactions instead")
+ return list(self._reaction)
+
+ def get_model(self):
+ """Returns the Model object that contain this Object"""
+ print("get_model is deprecated. used model property instead")
+ return self._model
+
+ @property
+ def model(self):
+ return(self._model)
diff --git a/cobra/core/__init__.py b/cobra/core/__init__.py
new file mode 100644
index 0000000..abb3c3d
--- /dev/null
+++ b/cobra/core/__init__.py
@@ -0,0 +1,22 @@
+from .DictList import DictList
+from .Object import Object
+from .Formula import Formula
+from .Gene import Gene
+from .Metabolite import Metabolite
+from .Reaction import Reaction
+from .Solution import Solution
+from .Model import Model
+from .Species import Species
+
+try:
+ import scipy
+except:
+ scipy = None
+
+if scipy:
+ from .ArrayBasedModel import ArrayBasedModel
+else:
+ from warnings import warn
+ warn("ArrayBasedModel requires scipy")
+ del warn
+del scipy
diff --git a/cobra/external/__init__.py b/cobra/external/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/cobra/external/ppmap.py b/cobra/external/ppmap.py
new file mode 100644
index 0000000..08d5ff3
--- /dev/null
+++ b/cobra/external/ppmap.py
@@ -0,0 +1,151 @@
+#!/usr/bin/env python
+
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions
+# are met:
+#
+# * Redistributions of source code must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# * Redistributions in binary form must reproduce the above
+# copyright notice, this list of conditions and the following
+# disclaimer in the documentation and/or other materials
+# provided with the distribution.
+#
+# * Neither the name of Kirk Strauser nor the names of other
+# contributors may be used to endorse or promote products
+# derived from this software without specific prior written
+# permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
+# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+# COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
+# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
+# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+# POSSIBILITY OF SUCH DAMAGE.
+
+"""
+Very basic parallel processing support
+
+Implements a work-alike of the builtin map() function that distributes
+work across many processes. As it uses Parallel Python to do the
+actual multi-processing, code using this must conform to the usual PP
+restrictions (arguments must be serializable, etc.)
+"""
+
+__author__ = "Kirk Strauser <kirk at strauser.com>"
+__version__ = "$Rev: 1139 $"
+__date__ = "$Date: 2008-04-16 $"
+
+import time
+import __builtin__
+
+try:
+ import pp
+except:
+ raise Exception('Could not import pp')
+__STATE = {'server': None}
+
+def ppmap(processes, function, sequence, *sequences):
+ """Split the work of 'function' across the given number of
+ processes. Set 'processes' to None to let Parallel Python
+ autodetect the number of children to use.
+
+ Although the calling semantics should be identical to
+ __builtin__.map (even using __builtin__.map to process
+ arguments), it differs in that it returns a generator instead of a
+ list. This enables lazy evaluation of the results so that other
+ work can be done while the subprocesses are still running.
+
+ >>> def rangetotal(n): return n, sum(range(n))
+ >>> list(map(rangetotal, range(1, 6)))
+ [(1, 0), (2, 1), (3, 3), (4, 6), (5, 10)]
+ >>> list(ppmap(1, rangetotal, range(1, 6)))
+ [(1, 0), (2, 1), (3, 3), (4, 6), (5, 10)]
+ """
+
+ # Create a new server if one isn't already initialized
+ if not __STATE['server']:
+ __STATE['server'] = pp.Server()
+
+ def submit(*args):
+ """Send a job to the server"""
+ return __STATE['server'].submit(function, args, globals=globals())
+
+ # Merge all the passed-in argument lists together. This is done
+ # that way because as with the map() function, at least one list
+ # is required but the rest are optional.
+ a = [sequence]
+ a.extend(sequences)
+ available_processes = sum( __STATE['server'].get_active_nodes().values())
+ # Set the requested level of multi-processing
+ if available_processes < processes:
+ __STATE['server'].set_ncpus(processes-available_processes or 'autodetect')
+
+ # First, submit all the jobs. Then harvest the results as they
+ # come available.
+ return (subproc() for subproc in __builtin__.map(submit, *a))
+
+if __name__ == '__main__':
+ def add(x, y, z):
+ """Add three values"""
+ return x + y + z
+
+ def busybeaver(x):
+ """This can take a while"""
+ for num in range(1000000):
+ x = x + num
+ return x
+ # Immediate evaluation example
+ start = time.time()
+ results = ppmap(None, busybeaver, range(10))
+ print 'Time to queue the jobs:', time.time() - start
+ start = time.time()
+ # Casting the ppmap generator to a list forces each result to be
+ # evaluated. When done immediately after the jobs are submitted,
+ # our program twiddles its thumbs while the work is finished.
+ print list(results)
+ print 'Time to get the results:', time.time() - start
+
+ # Delayed evaluation example
+ start = time.time()
+ results = ppmap(None, busybeaver, range(10))
+ print 'Time to queue the jobs:', time.time() - start
+ # In contrast with the above example, this time we're submitting a
+ # batch of jobs then going off to do more work while they're
+ # processing. Maybe "time.sleep" isn't the most exciting example,
+ # but it illustrates the point that our main program can do work
+ # before ppmap() is finished. Imagine that you're submitting some
+ # heavyweight image processing jobs at the beginning of your
+ # program, going on to do other stuff like fetching more work to
+ # do from a remote server, then coming back later to handle the
+ # results.
+ time.sleep(5)
+ start = time.time()
+ print list(results)
+ print 'Time to get the first results:', time.time() - start
+
+ # Built-in map example
+ print map(add, [1, 2, 3], [4, 5, 6], [7, 8, 9])
+
+ # Trivial ppmap tests
+ for i in range(10):
+ print '-' * 30
+ start = time.time()
+ print i, 'adders'
+ print ppmap(i, add, [1, 2, 3], [4, 5, 6], [7, 8, 9])
+ print 'Iteration time:', time.time() - start
+
+ # Heavier ppmap tests
+ for i in range(10):
+ print '-' * 30
+ start = time.time()
+ print i, 'beavers'
+ print ppmap(i, busybeaver, range(10))
+ print 'Iteration time:', time.time() - start
diff --git a/cobra/external/six.py b/cobra/external/six.py
new file mode 100644
index 0000000..f8f7d40
--- /dev/null
+++ b/cobra/external/six.py
@@ -0,0 +1,747 @@
+"""Utilities for writing code that runs on Python 2 and 3"""
+
+# Copyright (c) 2010-2014 Benjamin Peterson
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in all
+# copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+
+import functools
+import operator
+import sys
+import types
+
+__author__ = "Benjamin Peterson <benjamin at python.org>"
+__version__ = "1.7.3"
+
+
+# Useful for very coarse version differentiation.
+PY2 = sys.version_info[0] == 2
+PY3 = sys.version_info[0] == 3
+
+if PY3:
+ string_types = str,
+ integer_types = int,
+ class_types = type,
+ text_type = str
+ binary_type = bytes
+
+ MAXSIZE = sys.maxsize
+else:
+ string_types = basestring,
+ integer_types = (int, long)
+ class_types = (type, types.ClassType)
+ text_type = unicode
+ binary_type = str
+
+ if sys.platform.startswith("java"):
+ # Jython always uses 32 bits.
+ MAXSIZE = int((1 << 31) - 1)
+ else:
+ # It's possible to have sizeof(long) != sizeof(Py_ssize_t).
+ class X(object):
+ def __len__(self):
+ return 1 << 31
+ try:
+ len(X())
+ except OverflowError:
+ # 32-bit
+ MAXSIZE = int((1 << 31) - 1)
+ else:
+ # 64-bit
+ MAXSIZE = int((1 << 63) - 1)
+ del X
+
+
+def _add_doc(func, doc):
+ """Add documentation to a function."""
+ func.__doc__ = doc
+
+
+def _import_module(name):
+ """Import module, returning the module after the last dot."""
+ __import__(name)
+ return sys.modules[name]
+
+
+class _LazyDescr(object):
+
+ def __init__(self, name):
+ self.name = name
+
+ def __get__(self, obj, tp):
+ result = self._resolve()
+ setattr(obj, self.name, result) # Invokes __set__.
+ # This is a bit ugly, but it avoids running this again.
+ delattr(obj.__class__, self.name)
+ return result
+
+
+class MovedModule(_LazyDescr):
+
+ def __init__(self, name, old, new=None):
+ super(MovedModule, self).__init__(name)
+ if PY3:
+ if new is None:
+ new = name
+ self.mod = new
+ else:
+ self.mod = old
+
+ def _resolve(self):
+ return _import_module(self.mod)
+
+ def __getattr__(self, attr):
+ _module = self._resolve()
+ value = getattr(_module, attr)
+ setattr(self, attr, value)
+ return value
+
+
+class _LazyModule(types.ModuleType):
+
+ def __init__(self, name):
+ super(_LazyModule, self).__init__(name)
+ self.__doc__ = self.__class__.__doc__
+
+ def __dir__(self):
+ attrs = ["__doc__", "__name__"]
+ attrs += [attr.name for attr in self._moved_attributes]
+ return attrs
+
+ # Subclasses should override this
+ _moved_attributes = []
+
+
+class MovedAttribute(_LazyDescr):
+
+ def __init__(self, name, old_mod, new_mod, old_attr=None, new_attr=None):
+ super(MovedAttribute, self).__init__(name)
+ if PY3:
+ if new_mod is None:
+ new_mod = name
+ self.mod = new_mod
+ if new_attr is None:
+ if old_attr is None:
+ new_attr = name
+ else:
+ new_attr = old_attr
+ self.attr = new_attr
+ else:
+ self.mod = old_mod
+ if old_attr is None:
+ old_attr = name
+ self.attr = old_attr
+
+ def _resolve(self):
+ module = _import_module(self.mod)
+ return getattr(module, self.attr)
+
+
+class _SixMetaPathImporter(object):
+ """
+ A meta path importer to import six.moves and its submodules.
+
+ This class implements a PEP302 finder and loader. It should be compatible
+ with Python 2.5 and all existing versions of Python3
+ """
+ def __init__(self, six_module_name):
+ self.name = six_module_name
+ self.known_modules = {}
+
+ def _add_module(self, mod, *fullnames):
+ for fullname in fullnames:
+ self.known_modules[self.name + "." + fullname] = mod
+
+ def _get_module(self, fullname):
+ return self.known_modules[self.name + "." + fullname]
+
+ def find_module(self, fullname, path=None):
+ if fullname in self.known_modules:
+ return self
+ return None
+
+ def __get_module(self, fullname):
+ try:
+ return self.known_modules[fullname]
+ except KeyError:
+ raise ImportError("This loader does not know module " + fullname)
+
+ def load_module(self, fullname):
+ try:
+ # in case of a reload
+ return sys.modules[fullname]
+ except KeyError:
+ pass
+ mod = self.__get_module(fullname)
+ if isinstance(mod, MovedModule):
+ mod = mod._resolve()
+ else:
+ mod.__loader__ = self
+ sys.modules[fullname] = mod
+ return mod
+
+ def is_package(self, fullname):
+ """
+ Return true, if the named module is a package.
+
+ We need this method to get correct spec objects with
+ Python 3.4 (see PEP451)
+ """
+ return hasattr(self.__get_module(fullname), "__path__")
+
+ def get_code(self, fullname):
+ """Return None
+
+ Required, if is_package is implemented"""
+ self.__get_module(fullname) # eventually raises ImportError
+ return None
+ get_source = get_code # same as get_code
+
+_importer = _SixMetaPathImporter(__name__)
+
+
+class _MovedItems(_LazyModule):
+ """Lazy loading of moved objects"""
+ __path__ = [] # mark as package
+
+
+_moved_attributes = [
+ MovedAttribute("cStringIO", "cStringIO", "io", "StringIO"),
+ MovedAttribute("filter", "itertools", "builtins", "ifilter", "filter"),
+ MovedAttribute("filterfalse", "itertools", "itertools", "ifilterfalse", "filterfalse"),
+ MovedAttribute("input", "__builtin__", "builtins", "raw_input", "input"),
+ MovedAttribute("map", "itertools", "builtins", "imap", "map"),
+ MovedAttribute("range", "__builtin__", "builtins", "xrange", "range"),
+ MovedAttribute("reload_module", "__builtin__", "imp", "reload"),
+ MovedAttribute("reduce", "__builtin__", "functools"),
+ MovedAttribute("StringIO", "StringIO", "io"),
+ MovedAttribute("UserDict", "UserDict", "collections"),
+ MovedAttribute("UserList", "UserList", "collections"),
+ MovedAttribute("UserString", "UserString", "collections"),
+ MovedAttribute("xrange", "__builtin__", "builtins", "xrange", "range"),
+ MovedAttribute("zip", "itertools", "builtins", "izip", "zip"),
+ MovedAttribute("zip_longest", "itertools", "itertools", "izip_longest", "zip_longest"),
+
+ MovedModule("builtins", "__builtin__"),
+ MovedModule("configparser", "ConfigParser"),
+ MovedModule("copyreg", "copy_reg"),
+ MovedModule("dbm_gnu", "gdbm", "dbm.gnu"),
+ MovedModule("_dummy_thread", "dummy_thread", "_dummy_thread"),
+ MovedModule("http_cookiejar", "cookielib", "http.cookiejar"),
+ MovedModule("http_cookies", "Cookie", "http.cookies"),
+ MovedModule("html_entities", "htmlentitydefs", "html.entities"),
+ MovedModule("html_parser", "HTMLParser", "html.parser"),
+ MovedModule("http_client", "httplib", "http.client"),
+ MovedModule("email_mime_multipart", "email.MIMEMultipart", "email.mime.multipart"),
+ MovedModule("email_mime_text", "email.MIMEText", "email.mime.text"),
+ MovedModule("email_mime_base", "email.MIMEBase", "email.mime.base"),
+ MovedModule("BaseHTTPServer", "BaseHTTPServer", "http.server"),
+ MovedModule("CGIHTTPServer", "CGIHTTPServer", "http.server"),
+ MovedModule("SimpleHTTPServer", "SimpleHTTPServer", "http.server"),
+ MovedModule("cPickle", "cPickle", "pickle"),
+ MovedModule("queue", "Queue"),
+ MovedModule("reprlib", "repr"),
+ MovedModule("socketserver", "SocketServer"),
+ MovedModule("_thread", "thread", "_thread"),
+ MovedModule("tkinter", "Tkinter"),
+ MovedModule("tkinter_dialog", "Dialog", "tkinter.dialog"),
+ MovedModule("tkinter_filedialog", "FileDialog", "tkinter.filedialog"),
+ MovedModule("tkinter_scrolledtext", "ScrolledText", "tkinter.scrolledtext"),
+ MovedModule("tkinter_simpledialog", "SimpleDialog", "tkinter.simpledialog"),
+ MovedModule("tkinter_tix", "Tix", "tkinter.tix"),
+ MovedModule("tkinter_ttk", "ttk", "tkinter.ttk"),
+ MovedModule("tkinter_constants", "Tkconstants", "tkinter.constants"),
+ MovedModule("tkinter_dnd", "Tkdnd", "tkinter.dnd"),
+ MovedModule("tkinter_colorchooser", "tkColorChooser",
+ "tkinter.colorchooser"),
+ MovedModule("tkinter_commondialog", "tkCommonDialog",
+ "tkinter.commondialog"),
+ MovedModule("tkinter_tkfiledialog", "tkFileDialog", "tkinter.filedialog"),
+ MovedModule("tkinter_font", "tkFont", "tkinter.font"),
+ MovedModule("tkinter_messagebox", "tkMessageBox", "tkinter.messagebox"),
+ MovedModule("tkinter_tksimpledialog", "tkSimpleDialog",
+ "tkinter.simpledialog"),
+ MovedModule("urllib_parse", __name__ + ".moves.urllib_parse", "urllib.parse"),
+ MovedModule("urllib_error", __name__ + ".moves.urllib_error", "urllib.error"),
+ MovedModule("urllib", __name__ + ".moves.urllib", __name__ + ".moves.urllib"),
+ MovedModule("urllib_robotparser", "robotparser", "urllib.robotparser"),
+ MovedModule("xmlrpc_client", "xmlrpclib", "xmlrpc.client"),
+ MovedModule("xmlrpc_server", "SimpleXMLRPCServer", "xmlrpc.server"),
+ MovedModule("winreg", "_winreg"),
+]
+for attr in _moved_attributes:
+ setattr(_MovedItems, attr.name, attr)
+ if isinstance(attr, MovedModule):
+ _importer._add_module(attr, "moves." + attr.name)
+del attr
+
+_MovedItems._moved_attributes = _moved_attributes
+
+moves = _MovedItems(__name__ + ".moves")
+_importer._add_module(moves, "moves")
+
+
+class Module_six_moves_urllib_parse(_LazyModule):
+ """Lazy loading of moved objects in six.moves.urllib_parse"""
+
+
+_urllib_parse_moved_attributes = [
+ MovedAttribute("ParseResult", "urlparse", "urllib.parse"),
+ MovedAttribute("SplitResult", "urlparse", "urllib.parse"),
+ MovedAttribute("parse_qs", "urlparse", "urllib.parse"),
+ MovedAttribute("parse_qsl", "urlparse", "urllib.parse"),
+ MovedAttribute("urldefrag", "urlparse", "urllib.parse"),
+ MovedAttribute("urljoin", "urlparse", "urllib.parse"),
+ MovedAttribute("urlparse", "urlparse", "urllib.parse"),
+ MovedAttribute("urlsplit", "urlparse", "urllib.parse"),
+ MovedAttribute("urlunparse", "urlparse", "urllib.parse"),
+ MovedAttribute("urlunsplit", "urlparse", "urllib.parse"),
+ MovedAttribute("quote", "urllib", "urllib.parse"),
+ MovedAttribute("quote_plus", "urllib", "urllib.parse"),
+ MovedAttribute("unquote", "urllib", "urllib.parse"),
+ MovedAttribute("unquote_plus", "urllib", "urllib.parse"),
+ MovedAttribute("urlencode", "urllib", "urllib.parse"),
+ MovedAttribute("splitquery", "urllib", "urllib.parse"),
+]
+for attr in _urllib_parse_moved_attributes:
+ setattr(Module_six_moves_urllib_parse, attr.name, attr)
+del attr
+
+Module_six_moves_urllib_parse._moved_attributes = _urllib_parse_moved_attributes
+
+_importer._add_module(Module_six_moves_urllib_parse(__name__ + ".moves.urllib_parse"),
+ "moves.urllib_parse", "moves.urllib.parse")
+
+
+class Module_six_moves_urllib_error(_LazyModule):
+ """Lazy loading of moved objects in six.moves.urllib_error"""
+
+
+_urllib_error_moved_attributes = [
+ MovedAttribute("URLError", "urllib2", "urllib.error"),
+ MovedAttribute("HTTPError", "urllib2", "urllib.error"),
+ MovedAttribute("ContentTooShortError", "urllib", "urllib.error"),
+]
+for attr in _urllib_error_moved_attributes:
+ setattr(Module_six_moves_urllib_error, attr.name, attr)
+del attr
+
+Module_six_moves_urllib_error._moved_attributes = _urllib_error_moved_attributes
+
+_importer._add_module(Module_six_moves_urllib_error(__name__ + ".moves.urllib.error"),
+ "moves.urllib_error", "moves.urllib.error")
+
+
+class Module_six_moves_urllib_request(_LazyModule):
+ """Lazy loading of moved objects in six.moves.urllib_request"""
+
+
+_urllib_request_moved_attributes = [
+ MovedAttribute("urlopen", "urllib2", "urllib.request"),
+ MovedAttribute("install_opener", "urllib2", "urllib.request"),
+ MovedAttribute("build_opener", "urllib2", "urllib.request"),
+ MovedAttribute("pathname2url", "urllib", "urllib.request"),
+ MovedAttribute("url2pathname", "urllib", "urllib.request"),
+ MovedAttribute("getproxies", "urllib", "urllib.request"),
+ MovedAttribute("Request", "urllib2", "urllib.request"),
+ MovedAttribute("OpenerDirector", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPDefaultErrorHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPRedirectHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPCookieProcessor", "urllib2", "urllib.request"),
+ MovedAttribute("ProxyHandler", "urllib2", "urllib.request"),
+ MovedAttribute("BaseHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPPasswordMgr", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPPasswordMgrWithDefaultRealm", "urllib2", "urllib.request"),
+ MovedAttribute("AbstractBasicAuthHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPBasicAuthHandler", "urllib2", "urllib.request"),
+ MovedAttribute("ProxyBasicAuthHandler", "urllib2", "urllib.request"),
+ MovedAttribute("AbstractDigestAuthHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPDigestAuthHandler", "urllib2", "urllib.request"),
+ MovedAttribute("ProxyDigestAuthHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPSHandler", "urllib2", "urllib.request"),
+ MovedAttribute("FileHandler", "urllib2", "urllib.request"),
+ MovedAttribute("FTPHandler", "urllib2", "urllib.request"),
+ MovedAttribute("CacheFTPHandler", "urllib2", "urllib.request"),
+ MovedAttribute("UnknownHandler", "urllib2", "urllib.request"),
+ MovedAttribute("HTTPErrorProcessor", "urllib2", "urllib.request"),
+ MovedAttribute("urlretrieve", "urllib", "urllib.request"),
+ MovedAttribute("urlcleanup", "urllib", "urllib.request"),
+ MovedAttribute("URLopener", "urllib", "urllib.request"),
+ MovedAttribute("FancyURLopener", "urllib", "urllib.request"),
+ MovedAttribute("proxy_bypass", "urllib", "urllib.request"),
+]
+for attr in _urllib_request_moved_attributes:
+ setattr(Module_six_moves_urllib_request, attr.name, attr)
+del attr
+
+Module_six_moves_urllib_request._moved_attributes = _urllib_request_moved_attributes
+
+_importer._add_module(Module_six_moves_urllib_request(__name__ + ".moves.urllib.request"),
+ "moves.urllib_request", "moves.urllib.request")
+
+
+class Module_six_moves_urllib_response(_LazyModule):
+ """Lazy loading of moved objects in six.moves.urllib_response"""
+
+
+_urllib_response_moved_attributes = [
+ MovedAttribute("addbase", "urllib", "urllib.response"),
+ MovedAttribute("addclosehook", "urllib", "urllib.response"),
+ MovedAttribute("addinfo", "urllib", "urllib.response"),
+ MovedAttribute("addinfourl", "urllib", "urllib.response"),
+]
+for attr in _urllib_response_moved_attributes:
+ setattr(Module_six_moves_urllib_response, attr.name, attr)
+del attr
+
+Module_six_moves_urllib_response._moved_attributes = _urllib_response_moved_attributes
+
+_importer._add_module(Module_six_moves_urllib_response(__name__ + ".moves.urllib.response"),
+ "moves.urllib_response", "moves.urllib.response")
+
+
+class Module_six_moves_urllib_robotparser(_LazyModule):
+ """Lazy loading of moved objects in six.moves.urllib_robotparser"""
+
+
+_urllib_robotparser_moved_attributes = [
+ MovedAttribute("RobotFileParser", "robotparser", "urllib.robotparser"),
+]
+for attr in _urllib_robotparser_moved_attributes:
+ setattr(Module_six_moves_urllib_robotparser, attr.name, attr)
+del attr
+
+Module_six_moves_urllib_robotparser._moved_attributes = _urllib_robotparser_moved_attributes
+
+_importer._add_module(Module_six_moves_urllib_robotparser(__name__ + ".moves.urllib.robotparser"),
+ "moves.urllib_robotparser", "moves.urllib.robotparser")
+
+
+class Module_six_moves_urllib(types.ModuleType):
+ """Create a six.moves.urllib namespace that resembles the Python 3 namespace"""
+ __path__ = [] # mark as package
+ parse = _importer._get_module("moves.urllib_parse")
+ error = _importer._get_module("moves.urllib_error")
+ request = _importer._get_module("moves.urllib_request")
+ response = _importer._get_module("moves.urllib_response")
+ robotparser = _importer._get_module("moves.urllib_robotparser")
+
+ def __dir__(self):
+ return ['parse', 'error', 'request', 'response', 'robotparser']
+
+_importer._add_module(Module_six_moves_urllib(__name__ + ".moves.urllib"),
+ "moves.urllib")
+
+
+def add_move(move):
+ """Add an item to six.moves."""
+ setattr(_MovedItems, move.name, move)
+
+
+def remove_move(name):
+ """Remove item from six.moves."""
+ try:
+ delattr(_MovedItems, name)
+ except AttributeError:
+ try:
+ del moves.__dict__[name]
+ except KeyError:
+ raise AttributeError("no such move, %r" % (name,))
+
+
+if PY3:
+ _meth_func = "__func__"
+ _meth_self = "__self__"
+
+ _func_closure = "__closure__"
+ _func_code = "__code__"
+ _func_defaults = "__defaults__"
+ _func_globals = "__globals__"
+else:
+ _meth_func = "im_func"
+ _meth_self = "im_self"
+
+ _func_closure = "func_closure"
+ _func_code = "func_code"
+ _func_defaults = "func_defaults"
+ _func_globals = "func_globals"
+
+
+try:
+ advance_iterator = next
+except NameError:
+ def advance_iterator(it):
+ return it.next()
+next = advance_iterator
+
+
+try:
+ callable = callable
+except NameError:
+ def callable(obj):
+ return any("__call__" in klass.__dict__ for klass in type(obj).__mro__)
+
+
+if PY3:
+ def get_unbound_function(unbound):
+ return unbound
+
+ create_bound_method = types.MethodType
+
+ Iterator = object
+else:
+ def get_unbound_function(unbound):
+ return unbound.im_func
+
+ def create_bound_method(func, obj):
+ return types.MethodType(func, obj, obj.__class__)
+
+ class Iterator(object):
+
+ def next(self):
+ return type(self).__next__(self)
+
+ callable = callable
+_add_doc(get_unbound_function,
+ """Get the function out of a possibly unbound function""")
+
+
+get_method_function = operator.attrgetter(_meth_func)
+get_method_self = operator.attrgetter(_meth_self)
+get_function_closure = operator.attrgetter(_func_closure)
+get_function_code = operator.attrgetter(_func_code)
+get_function_defaults = operator.attrgetter(_func_defaults)
+get_function_globals = operator.attrgetter(_func_globals)
+
+
+if PY3:
+ def iterkeys(d, **kw):
+ return iter(d.keys(**kw))
+
+ def itervalues(d, **kw):
+ return iter(d.values(**kw))
+
+ def iteritems(d, **kw):
+ return iter(d.items(**kw))
+
+ def iterlists(d, **kw):
+ return iter(d.lists(**kw))
+else:
+ def iterkeys(d, **kw):
+ return iter(d.iterkeys(**kw))
+
+ def itervalues(d, **kw):
+ return iter(d.itervalues(**kw))
+
+ def iteritems(d, **kw):
+ return iter(d.iteritems(**kw))
+
+ def iterlists(d, **kw):
+ return iter(d.iterlists(**kw))
+
+_add_doc(iterkeys, "Return an iterator over the keys of a dictionary.")
+_add_doc(itervalues, "Return an iterator over the values of a dictionary.")
+_add_doc(iteritems,
+ "Return an iterator over the (key, value) pairs of a dictionary.")
+_add_doc(iterlists,
+ "Return an iterator over the (key, [values]) pairs of a dictionary.")
+
+
+if PY3:
+ def b(s):
+ return s.encode("latin-1")
+ def u(s):
+ return s
+ unichr = chr
+ if sys.version_info[1] <= 1:
+ def int2byte(i):
+ return bytes((i,))
+ else:
+ # This is about 2x faster than the implementation above on 3.2+
+ int2byte = operator.methodcaller("to_bytes", 1, "big")
+ byte2int = operator.itemgetter(0)
+ indexbytes = operator.getitem
+ iterbytes = iter
+ import io
+ StringIO = io.StringIO
+ BytesIO = io.BytesIO
+else:
+ def b(s):
+ return s
+ # Workaround for standalone backslash
+ def u(s):
+ return unicode(s.replace(r'\\', r'\\\\'), "unicode_escape")
+ unichr = unichr
+ int2byte = chr
+ def byte2int(bs):
+ return ord(bs[0])
+ def indexbytes(buf, i):
+ return ord(buf[i])
+ def iterbytes(buf):
+ return (ord(byte) for byte in buf)
+ import StringIO
+ StringIO = BytesIO = StringIO.StringIO
+_add_doc(b, """Byte literal""")
+_add_doc(u, """Text literal""")
+
+
+if PY3:
+ exec_ = getattr(moves.builtins, "exec")
+
+
+ def reraise(tp, value, tb=None):
+ if value.__traceback__ is not tb:
+ raise value.with_traceback(tb)
+ raise value
+
+else:
+ def exec_(_code_, _globs_=None, _locs_=None):
+ """Execute code in a namespace."""
+ if _globs_ is None:
+ frame = sys._getframe(1)
+ _globs_ = frame.f_globals
+ if _locs_ is None:
+ _locs_ = frame.f_locals
+ del frame
+ elif _locs_ is None:
+ _locs_ = _globs_
+ exec("""exec _code_ in _globs_, _locs_""")
+
+
+ exec_("""def reraise(tp, value, tb=None):
+ raise tp, value, tb
+""")
+
+
+print_ = getattr(moves.builtins, "print", None)
+if print_ is None:
+ def print_(*args, **kwargs):
+ """The new-style print function for Python 2.4 and 2.5."""
+ fp = kwargs.pop("file", sys.stdout)
+ if fp is None:
+ return
+ def write(data):
+ if not isinstance(data, basestring):
+ data = str(data)
+ # If the file has an encoding, encode unicode with it.
+ if (isinstance(fp, file) and
+ isinstance(data, unicode) and
+ fp.encoding is not None):
+ errors = getattr(fp, "errors", None)
+ if errors is None:
+ errors = "strict"
+ data = data.encode(fp.encoding, errors)
+ fp.write(data)
+ want_unicode = False
+ sep = kwargs.pop("sep", None)
+ if sep is not None:
+ if isinstance(sep, unicode):
+ want_unicode = True
+ elif not isinstance(sep, str):
+ raise TypeError("sep must be None or a string")
+ end = kwargs.pop("end", None)
+ if end is not None:
+ if isinstance(end, unicode):
+ want_unicode = True
+ elif not isinstance(end, str):
+ raise TypeError("end must be None or a string")
+ if kwargs:
+ raise TypeError("invalid keyword arguments to print()")
+ if not want_unicode:
+ for arg in args:
+ if isinstance(arg, unicode):
+ want_unicode = True
+ break
+ if want_unicode:
+ newline = unicode("\n")
+ space = unicode(" ")
+ else:
+ newline = "\n"
+ space = " "
+ if sep is None:
+ sep = space
+ if end is None:
+ end = newline
+ for i, arg in enumerate(args):
+ if i:
+ write(sep)
+ write(arg)
+ write(end)
+
+_add_doc(reraise, """Reraise an exception.""")
+
+if sys.version_info[0:2] < (3, 4):
+ def wraps(wrapped):
+ def wrapper(f):
+ f = functools.wraps(wrapped)(f)
+ f.__wrapped__ = wrapped
+ return f
+ return wrapper
+else:
+ wraps = functools.wraps
+
+def with_metaclass(meta, *bases):
+ """Create a base class with a metaclass."""
+ # This requires a bit of explanation: the basic idea is to make a dummy
+ # metaclass for one level of class instantiation that replaces itself with
+ # the actual metaclass.
+ class metaclass(meta):
+ def __new__(cls, name, this_bases, d):
+ return meta(name, bases, d)
+ return type.__new__(metaclass, 'temporary_class', (), {})
+
+
+def add_metaclass(metaclass):
+ """Class decorator for creating a class with a metaclass."""
+ def wrapper(cls):
+ orig_vars = cls.__dict__.copy()
+ orig_vars.pop('__dict__', None)
+ orig_vars.pop('__weakref__', None)
+ slots = orig_vars.get('__slots__')
+ if slots is not None:
+ if isinstance(slots, str):
+ slots = [slots]
+ for slots_var in slots:
+ orig_vars.pop(slots_var)
+ return metaclass(cls.__name__, cls.__bases__, orig_vars)
+ return wrapper
+
+# Complete the moves implementation.
+# This code is at the end of this module to speed up module loading.
+# Turn this module into a package.
+__path__ = [] # required for PEP 302 and PEP 451
+__package__ = __name__ # see PEP 366 @ReservedAssignment
+if globals().get("__spec__") is not None:
+ __spec__.submodule_search_locations = [] # PEP 451 @UndefinedVariable
+# Remove other six meta path importers, since they cause problems. This can
+# happen if six is removed from sys.modules and then reloaded. (Setuptools does
+# this for some reason.)
+if sys.meta_path:
+ for i, importer in enumerate(sys.meta_path):
+ # Here's some real nastiness: Another "instance" of the six module might
+ # be floating around. Therefore, we can't use isinstance() to check for
+ # the six meta path importer, since the other six instance will have
+ # inserted an importer with different class.
+ if (type(importer).__name__ == "_SixMetaPathImporter" and
+ importer.name == __name__):
+ del sys.meta_path[i]
+ break
+ del i, importer
+# Finally, add the importer to the meta path import hook.
+sys.meta_path.append(_importer)
diff --git a/cobra/flux_analysis/__init__.py b/cobra/flux_analysis/__init__.py
new file mode 100644
index 0000000..9760f38
--- /dev/null
+++ b/cobra/flux_analysis/__init__.py
@@ -0,0 +1,16 @@
+try:
+ import numpy
+except:
+ numpy = None
+
+from .essentiality import assess_medium_component_essentiality
+from .variability import flux_variability_analysis
+from .single_deletion import single_deletion
+
+if numpy:
+ from .double_deletion import double_deletion
+else:
+ from warnings import warn
+ warn("double_deletion requires numpy")
+ del warn
+del numpy
diff --git a/cobra/flux_analysis/deletion_worker.py b/cobra/flux_analysis/deletion_worker.py
new file mode 100644
index 0000000..2e6851e
--- /dev/null
+++ b/cobra/flux_analysis/deletion_worker.py
@@ -0,0 +1,167 @@
+from multiprocessing import Queue, Process, cpu_count
+
+from ..solvers import get_solver_name, solver_dict
+from ..external.six import iteritems
+
+
+def compute_fba_deletion_worker(cobra_model, solver, job_queue, output_queue,
+ **kwargs):
+ solver = solver_dict[get_solver_name() if solver is None else solver]
+ lp = solver.create_problem(cobra_model)
+ solver_args = kwargs
+ solver.solve_problem(lp)
+ while True:
+ indexes, label = job_queue.get()
+ label = indexes if label is None else label
+ result = compute_fba_deletion(lp, solver, cobra_model, indexes,
+ **solver_args)
+ output_queue.put((label, result))
+
+
+def compute_fba_deletion(lp, solver_object, model, indexes, **kwargs):
+ s = solver_object
+ old_bounds = {}
+ for i in indexes:
+ reaction = model.reactions[i]
+ old_bounds[i] = (reaction.lower_bound, reaction.upper_bound)
+ s.change_variable_bounds(lp, i, 0., 0.)
+ try:
+ s.solve_problem(lp, **kwargs)
+ except Exception as e:
+ return RuntimeError("solver failure when deleting %s: %s" %
+ (str(indexes), repr(e)))
+ status = s.get_status(lp)
+ objective = s.get_objective_value(lp) if status == "optimal" else 0.
+
+ # reset the problem, which must be done after reading the solution
+ for index, bounds in iteritems(old_bounds):
+ s.change_variable_bounds(lp, index, bounds[0], bounds[1])
+
+ if status == "infeasible" or status == "optimal":
+ return objective
+ else:
+ return RuntimeError("solver failure (status %s) for when deleting %s" %
+ (status, str(indexes)))
+
+
+class CobraDeletionPool(object):
+ """A pool of workers for solving deletions
+
+ submit jobs to the pool using submit and recieve results using receive_all
+ """
+ # Having an existing basis makes solving an existing LP much faster. The
+ # most efficient approach is to have a worker function which modifies an LP
+ # object and reverts it back after each calculation. Each lp object stores
+ # the basis so subsequent LP's are solved more quickely, and memory does
+ # not need to be re-allocated each time to create a new problem. Because
+ # state is being saved, the workers in the deletion pool are careful about
+ # reverting the object after simulating a deletion, and are written to be
+ # flexible enough so they can be used in most applications instead of
+ # writing a custom worker each time.
+ def __init__(self, cobra_model, n_processes=None, solver=None, **kwargs):
+ if n_processes is None:
+ n_processes = min(cpu_count(), 4)
+ # start queues
+ self.job_queue = Queue() # format is (indexes, job_label)
+ self.n_submitted = 0
+ self.n_complete = 0
+ self.output_queue = Queue() # format is (job_label, growth_rate)
+ # start processes
+ self.processes = []
+ for i in range(n_processes):
+ p = Process(target=compute_fba_deletion_worker,
+ args=[cobra_model, solver,
+ self.job_queue, self.output_queue],
+ kwargs=kwargs)
+ self.processes.append(p)
+
+ def start(self):
+ for p in self.processes:
+ p.start()
+
+ def terminate(self):
+ for p in self.processes:
+ p.terminate()
+
+ def __enter__(self):
+ self.start()
+ return self
+
+ def __exit__(self, exc_type, exc_val, exc_tb):
+ self.terminate()
+
+ def submit(self, indexes, label=None):
+ self.job_queue.put((indexes, label))
+ self.n_submitted += 1
+
+ def receive_one(self):
+ """This function blocks"""
+ self.n_complete += 1
+ result = self.output_queue.get()
+ if isinstance(result[1], Exception):
+ raise result[1]
+ return result
+
+ def receive_all(self):
+ while self.n_complete < self.n_submitted:
+ self.n_complete += 1
+ result = self.output_queue.get()
+ if isinstance(result[1], Exception):
+ raise result[1]
+ yield result
+
+ @property
+ def pids(self):
+ return [p.pid for p in self.processes]
+
+ def __del__(self):
+ for process in self.processes:
+ process.terminate()
+ process.join()
+
+
+class CobraDeletionMockPool(object):
+ """Mock pool solves LP's in the same process"""
+ def __init__(self, cobra_model, n_processes=1, solver=None, **kwargs):
+ if n_processes != 1:
+ from warnings import warn
+ warn("Mock Pool does not do multiprocessing")
+ self.job_queue = []
+ self.solver_args = kwargs
+ solver_name = get_solver_name() if solver is None else solver
+ self.solver = solver_dict[solver_name]
+ self.lp = self.solver.create_problem(cobra_model)
+ self.solver.solve_problem(self.lp)
+ self.model = cobra_model
+
+ def submit(self, indexes, label=None):
+ self.job_queue.append((indexes, label))
+
+ def receive_one(self):
+ indexes, label = self.job_queue.pop()
+ result = compute_fba_deletion(self.lp, self.solver, self.model,
+ indexes, **self.solver_args)
+ if isinstance(result, Exception):
+ raise result
+ return (label, result)
+
+ def receive_all(self):
+ for i in range(len(self.job_queue)):
+ indexes, label = self.job_queue.pop()
+ result = compute_fba_deletion(self.lp, self.solver, self.model,
+ indexes, **self.solver_args)
+ if isinstance(result, Exception):
+ raise result
+ yield (label, result)
+
+ def start(self):
+ None
+
+ def terminate(self):
+ None
+
+ def __enter__(self):
+ return self
+
+ def __exit__(self, exc_type, exc_val, exc_tb):
+ None
diff --git a/cobra/flux_analysis/double_deletion.py b/cobra/flux_analysis/double_deletion.py
new file mode 100644
index 0000000..9a8aa17
--- /dev/null
+++ b/cobra/flux_analysis/double_deletion.py
@@ -0,0 +1,544 @@
+
+from __future__ import with_statement, print_function
+#cobra.flux_analysis.double_deletion.py
+#runs flux variablity analysis on a Model object.
+from copy import deepcopy
+from warnings import warn
+from os import name as __name
+nan = float('nan')
+from sys import modules as __modules
+
+from itertools import chain, product
+import numpy
+
+from ..solvers import get_solver_name, solver_dict
+from ..external.six import iteritems, string_types
+from ..manipulation.delete import find_gene_knockout_reactions, \
+ get_compiled_gene_reaction_rules
+from .deletion_worker import CobraDeletionPool, CobraDeletionMockPool
+
+try:
+ from .moma import moma
+except:
+ def moma(*args, **kwargs):
+ raise Exception("moma dependencies missing")
+
+try:
+ from pandas import DataFrame
+except:
+ DataFrame = None
+
+def double_reaction_deletion_fba(cobra_model, reaction_list1=None,
+ reaction_list2=None, solver=None,
+ number_of_processes=None,
+ return_frame=False, zero_cutoff=1e-15,
+ **kwargs):
+ """setting n_processes=1 explicitly disables multiprocessing"""
+ if solver is None:
+ solver = get_solver_name()
+ if reaction_list1 is None:
+ reaction_indexes1 = range(len(cobra_model.reactions))
+ else:
+ reaction_indexes1 = [cobra_model.reactions.index(r) for r in reaction_list1]
+ if reaction_list2 is None:
+ reaction_indexes2 = reaction_indexes1
+ else:
+ reaction_indexes2 = [cobra_model.reactions.index(r) for r in reaction_list2]
+ # results are stored in a matrix. reaction_to_result maps a reaction index
+ # to the index in the results matrix
+ reaction_indexes = list(set(chain(reaction_indexes1, reaction_indexes2)))
+ reaction_to_result = {reaction_index: result_index
+ for result_index, reaction_index in enumerate(reaction_indexes)}
+ row_indexes = [reaction_to_result[i] for i in reaction_indexes1]
+ row_index_set = set(row_indexes)
+ row_names = [cobra_model.reactions[i].id for i in reaction_indexes1]
+ column_indexes = [reaction_to_result[i] for i in reaction_indexes2]
+ column_index_set = set(column_indexes)
+ column_names = [cobra_model.reactions[i].id for i in reaction_indexes2]
+
+ n_results = len(reaction_to_result)
+ results = numpy.empty((n_results, n_results))
+ results.fill(numpy.nan)
+
+ wt_solution = solver_dict[solver].solve(cobra_model)
+ # Determine 0 flux reactions. If an optimal solution passes no flux
+ # through the deleted reactions, then we know removing them will
+ # not change the solution.
+ wt_flux = wt_solution.f
+ no_flux_reaction_indexes = {i for i, v in enumerate(wt_solution.x)
+ if abs(v) < zero_cutoff}
+
+ if number_of_processes == 1: # explicitly disable multiprocessing
+ PoolClass = CobraDeletionMockPool
+ else:
+ PoolClass = CobraDeletionPool
+ with PoolClass(cobra_model, n_processes=number_of_processes,
+ solver=solver, **kwargs) as pool:
+ # submit jobs
+
+ # precompute all single deletions in the pool and store them along
+ # the diagonal
+ for reaction_index, result_index in iteritems(reaction_to_result):
+ pool.submit((reaction_index, ), label=result_index)
+ for result_index, value in pool.receive_all():
+ # if singly lethal, set everything in row and column to 0
+ value = value if abs(value) > zero_cutoff else 0.
+ if value == 0.:
+ results[result_index, :] = 0.
+ results[:, result_index] = 0.
+ else: # only the diagonal needs to be set
+ results[result_index, result_index] = value
+
+ for r1_index, r2_index in product(reaction_indexes1, reaction_indexes2):
+ r1_result_index = reaction_to_result[r1_index]
+ r2_result_index = reaction_to_result[r2_index]
+ if r2_result_index > r1_result_index: # upper triangle only
+ if results[r1_result_index, r1_result_index] == 0 or \
+ results[r2_result_index, r2_result_index] == 0:
+ continue
+ # reactions removed carry no flux
+ if r1_index in no_flux_reaction_indexes and \
+ r2_index in no_flux_reaction_indexes:
+ results[r1_result_index, r2_result_index] = wt_flux
+ continue
+ pool.submit((r1_index, r2_index),
+ label=(r1_result_index, r2_result_index))
+ # if it's a point only in the lower triangle, compute it
+ # and put it in the upper triangle
+ elif r1_result_index not in column_index_set or \
+ r2_result_index not in row_index_set:
+ pool.submit((r1_index, r2_index),
+ label=(r2_result_index, r1_result_index))
+
+ # get results
+ for result in pool.receive_all():
+ results[result[0]] = result[1]
+
+
+ # reflect results
+ triu1, triu2 = numpy.triu_indices(n_results)
+ results[triu2, triu1] = results[triu1, triu2]
+
+ results = results[row_indexes, :][:, column_indexes]
+
+ if return_frame and DataFrame:
+ return DataFrame(data=results, index=row_names, columns=column_names)
+
+ elif return_frame and not DataFrame:
+ warn("could not import pandas.DataFrame")
+
+ return {"x": [cobra_model.reactions.get_by_id(i) for i in row_names],
+ "y": [cobra_model.reactions.get_by_id(i) for i in column_names],
+ "data": results}
+
+def double_gene_deletion_fba(cobra_model, gene_list1=None, gene_list2=None,
+ solver=None, number_of_processes=None,
+ return_frame=False, zero_cutoff=1e-12, **kwargs):
+ if solver is None:
+ solver = get_solver_name()
+ if gene_list1 is None:
+ gene_list1 = cobra_model.genes
+ else:
+ gene_list1 = [cobra_model.genes.get_by_id(i)
+ if isinstance(i, string_types) else i
+ for i in gene_list1]
+ if gene_list2 is None:
+ gene_list2 = gene_list1
+ else:
+ gene_list2 = [cobra_model.genes.get_by_id(i)
+ if isinstance(i, string_types) else i
+ for i in gene_list2]
+ # Because each gene reaction rule will be evaluated multiple times
+ # the reaction has multiple associated genes being deleted, compiling
+ # the gene reaction rules ahead of time increases efficiency greatly.
+ compiled_rules = get_compiled_gene_reaction_rules(cobra_model)
+ # Store results in a matrix. The gene_id_to_result dict will map each
+ # gene id to the index in the result matrix
+ gene_ids1 = [i.id for i in gene_list1]
+ gene_ids2 = [i.id for i in gene_list2]
+ gene_id_to_result = {}
+ n = 0
+ for i in gene_ids1:
+ if i not in gene_id_to_result:
+ gene_id_to_result[i] = n
+ n += 1
+ for i in gene_ids2:
+ if i not in gene_id_to_result:
+ gene_id_to_result[i] = n
+ n += 1
+
+ row_indexes = [gene_id_to_result[id] for id in gene_ids1]
+ row_index_set = set(row_indexes)
+ column_indexes = [gene_id_to_result[id] for id in gene_ids2]
+ column_index_set = set(column_indexes)
+
+ n_results = len(gene_id_to_result)
+ results = numpy.empty((n_results, n_results))
+ results.fill(numpy.nan)
+
+ wt_solution = solver_dict[solver].solve(cobra_model)
+ # Determine 0 flux reactions. If an optimal solution passes no flux
+ # through the deleted reactions, then we know removing them will
+ # not change the solution.
+ wt_flux = wt_solution.f
+ no_flux_reaction_indexes = {i for i, v in enumerate(wt_solution.x)
+ if abs(v) < zero_cutoff}
+
+ if number_of_processes == 1: # explicitly disable multiprocessing
+ PoolClass = CobraDeletionMockPool
+ else:
+ PoolClass = CobraDeletionPool
+ with PoolClass(cobra_model, n_processes=number_of_processes,
+ solver=solver, **kwargs) as pool:
+ # precompute all single deletions in the pool and store them along
+ # the diagonal
+ for gene_id, gene_result_index in iteritems(gene_id_to_result):
+ ko_reactions = find_gene_knockout_reactions(
+ cobra_model, (cobra_model.genes.get_by_id(gene_id),))
+ ko_indexes = [cobra_model.reactions.index(i) for i in ko_reactions]
+ pool.submit(ko_indexes, label=gene_result_index)
+ for result_index, value in pool.receive_all():
+ # if singly lethal, set everything in row and column to 0
+ value = value if abs(value) > zero_cutoff else 0.
+ if value == 0.:
+ results[result_index, :] = 0.
+ results[:, result_index] = 0.
+ else: # only the diagonal needs to be set
+ results[result_index, result_index] = value
+ # double deletions
+ for gene1, gene2 in product(gene_list1, gene_list2):
+ g1_result_index = gene_id_to_result[gene1.id]
+ g2_result_index = gene_id_to_result[gene2.id]
+ if g2_result_index > g1_result_index: # upper triangle only
+ # if singly lethal the results have already been set
+ if results[g1_result_index, g1_result_index] == 0 or \
+ results[g2_result_index, g2_result_index] == 0:
+ continue
+ ko_reactions = find_gene_knockout_reactions(
+ cobra_model, (gene1, gene2), compiled_rules)
+ ko_indexes = [cobra_model.reactions.index(i)
+ for i in ko_reactions]
+ # if all removed gene indexes carry no flux
+ if len(set(ko_indexes) - no_flux_reaction_indexes) == 0:
+ results[g1_result_index, g2_result_index] = wt_flux
+ continue
+ pool.submit(ko_indexes,
+ label=(g1_result_index, g2_result_index))
+ # if it's a point only in the lower triangle, compute it
+ # and put it in the upper triangle
+ elif g1_result_index not in column_index_set or \
+ g2_result_index not in row_index_set:
+ ko_reactions = find_gene_knockout_reactions(
+ cobra_model, (gene1, gene2), compiled_rules)
+ ko_indexes = [cobra_model.reactions.index(i)
+ for i in ko_reactions]
+ pool.submit(ko_indexes,
+ label=(g2_result_index, g1_result_index))
+
+ for result in pool.receive_all():
+ value = result[1]
+ if value < zero_cutoff:
+ value = 0
+ results[result[0]] = value
+
+ del pool
+
+ # reflect results
+ triu1, triu2 = numpy.triu_indices(n_results)
+ results[triu2, triu1] = results[triu1, triu2]
+
+ results = results[row_indexes, :][:, column_indexes]
+
+ if return_frame and DataFrame:
+ return DataFrame(data=results, index=gene_ids1, columns=gene_ids2)
+
+ elif return_frame and not DataFrame:
+ warn("could not import pandas.DataFrame")
+
+ return {"x": [cobra_model.genes.get_by_id(i) for i in gene_ids1],
+ "y": [cobra_model.genes.get_by_id(i) for i in gene_ids2],
+ "data": results}
+
+
+def double_deletion(cobra_model, element_list_1=None, element_list_2=None,
+ method='fba', single_deletion_growth_dict=None,
+ element_type='gene', solver=None,
+ number_of_processes=None,
+ return_frame=False, zero_cutoff=1e-12,
+ **kwargs):
+ """Run double gene or reaction deletions
+
+ cobra_model: a cobra.Model object
+
+ element_list_1: None or a list of elements (genes or reactions)
+
+ element_list_2: None or a list of elements (genes or reactions)
+
+ method: 'fba' or 'moma'
+ Whether to compute growth rates using flux balance analysis or
+ minimization of metabolic adjustments.
+
+ number_of_processes: None or int
+ The number of processor core to use. Setting 1 explicitly disables
+ use of the multiprocessing library. By default, up to 4 cores will be
+ used if available.
+
+ element_type: 'gene' or 'reaction'
+
+ zero_cutoff: float
+ For single deletions which are assumed to be lethal, any double
+ deletion will also be assumed to be lethal. Additionally, removing only
+ reactions with no flux will assume the result is the same as wild-type.
+ This parameter sets the cutoff for the absolute value to determine if a
+ flux is 0. To disable this optimization, set this to a negative value.
+
+ solver: 'glpk', 'cglpk', 'gurobi', 'cplex' or None
+
+ return_frame: bool
+ If True, format data as a pandas Dataframe
+
+ Returns a dictionary of the elements in the x dimension (x), the y
+ dimension (y), and the growth simulation data (data).
+
+ """
+
+ if "error_reporting" in kwargs:
+ warn("error_reporting option removed")
+ kwargs.pop("error_reporting")
+ if "single_deletion_growth_dict" in kwargs:
+ warn("single_deletion_growth_dict option removed")
+ kwargs.pop("single_deletion_growth_dict")
+
+ if method == "fba":
+ if element_type == "gene":
+ return double_gene_deletion_fba(
+ cobra_model,
+ gene_list1=element_list_1,
+ gene_list2=element_list_2,
+ solver=solver,
+ return_frame=return_frame,
+ zero_cutoff=zero_cutoff,
+ number_of_processes=number_of_processes,
+ **kwargs)
+ elif element_type == "reaction":
+ return double_reaction_deletion_fba(
+ cobra_model,
+ reaction_list1=element_list_1,
+ reaction_list2=element_list_2,
+ solver=solver,
+ zero_cutoff=zero_cutoff,
+ return_frame=return_frame,
+ number_of_processes=number_of_processes,
+ **kwargs)
+ else:
+ raise ValueError("element_type %s not gene or reaction" %
+ element_type)
+
+ if method != "moma":
+ raise ValueError("method %s is not fba or moma" % method)
+
+ if solver is None:
+ solver = get_solver_name()
+
+ if number_of_processes > 1:
+ warn("parallel moma double deletion not implemented")
+
+ if element_type == 'gene':
+ return double_gene_deletion_moma(
+ cobra_model, gene_list_1=element_list_1,
+ gene_list_2=element_list_2, method=method,
+ single_deletion_growth_dict=single_deletion_growth_dict,
+ solver=solver,
+ error_reporting=error_reporting)
+ else:
+ raise Exception("Double reaction deletion with moma not yet implemented")
+
+def double_gene_deletion_moma(cobra_model, gene_list_1=None, gene_list_2=None,
+ method='moma', single_deletion_growth_dict=None,
+ solver='glpk', growth_tolerance=1e-8,
+ error_reporting=None):
+ """This will disable reactions for all gene pairs from gene_list_1 and
+ gene_list_2 and then run simulations to optimize for the objective
+ function. The contribution of each reaction to the objective function
+ is indicated in cobra_model.reactions[:].objective_coefficient vector.
+
+ NOTE: We've assumed that there is no such thing as a synthetic rescue with
+ this modeling framework.
+
+ cobra_model: a cobra.Model object
+
+ gene_list_1: Is None or a list of genes. If None then both gene_list_1
+ and gene_list_2 are assumed to correspond to cobra_model.genes.
+
+ gene_list_2: Is None or a list of genes. If None then gene_list_2 is
+ assumed to correspond to gene_list_1.
+
+ method: 'fba' or 'moma' to run flux balance analysis or minimization
+ of metabolic adjustments.
+
+ single_deletion_growth_dict: A dictionary that provides the growth
+ rate information for single gene knock outs. This can speed up
+ simulations because nonviable single deletion strains imply that all
+ double deletion strains will also be nonviable.
+
+ solver: 'glpk', 'gurobi', or 'cplex'.
+
+ error_reporting: None or True
+
+ growth_tolerance: float. The effective lower bound on the growth rate
+ for a single deletion that is still considered capable of growth.
+
+ Returns a dictionary of the gene ids in the x dimension (x) and the y
+ dimension (y), and the growth simulation data (data).
+
+ """
+ #BUG: Since this might be called from ppmap, the modules need to
+ #be imported. Modify ppmap to take depfuncs
+ from numpy import zeros
+ nan = float('nan')
+ from cobra.flux_analysis.single_deletion import single_deletion
+ from cobra.manipulation import delete_model_genes, undelete_model_genes
+ ##TODO: Use keywords instead
+ if isinstance(cobra_model, dict):
+ tmp_dict = cobra_model
+ cobra_model = tmp_dict['cobra_model']
+ if 'gene_list_1' in tmp_dict:
+ gene_list_1 = tmp_dict['gene_list_1']
+ if 'gene_list_2' in tmp_dict:
+ gene_list_2 = tmp_dict['gene_list_2']
+ if 'method' in tmp_dict:
+ method = tmp_dict['method']
+ if 'single_deletion_growth_dict' in tmp_dict:
+ single_deletion_growth_dict = tmp_dict['single_deletion_growth_dict']
+ if 'solver' in tmp_dict:
+ solver = tmp_dict['solver']
+ if 'error_reporting' in tmp_dict:
+ error_reporting = tmp_dict['error_reporting']
+ else:
+ cobra_model = cobra_model
+ #this is a slow way to revert models.
+ wt_model = cobra_model #NOTE: It may no longer be necessary to use a wt_model
+ #due to undelete_model_genes
+ if gene_list_1 is None:
+ gene_list_1 = cobra_model.genes
+ elif not hasattr(gene_list_1[0], 'id'):
+ gene_list_1 = map(cobra_model.genes.get_by_id, gene_list_1)
+ #Get default values to use if the deletions do not alter any reactions
+ cobra_model.optimize(solver=solver)
+ basal_f = cobra_model.solution.f
+ if method.lower() == 'moma':
+ wt_model = cobra_model.copy()
+ combined_model = None
+ single_gene_set = set(gene_list_1)
+ if gene_list_2 is not None:
+ if not hasattr(gene_list_2[0], 'id'):
+ gene_list_2 = map(cobra_model.genes.get_by_id, gene_list_2)
+ single_gene_set.update(gene_list_2)
+ #Run the single deletion analysis to account for double deletions that
+ #target the same gene and lethal deletions. We assume that there
+ #aren't synthetic rescues.
+ single_deletion_growth_dict = single_deletion(cobra_model,
+ list(single_gene_set),
+ method=method,
+ solver=solver)[0]
+ if gene_list_2 is None or gene_list_1 == gene_list_2:
+ number_of_genes = len(gene_list_1)
+ gene_list_2 = gene_list_1
+ deletion_array = zeros([number_of_genes, number_of_genes])
+ ##TODO: Speed up this triangular process
+ #For the case where the contents of the lists are the same cut the work in half.
+ #There might be a faster way to do this by using a triangular array function
+ #in numpy
+ #Populate the diagonal from the single deletion lists
+ for i, the_gene in enumerate(gene_list_1):
+ deletion_array[i, i] = single_deletion_growth_dict[the_gene.id]
+ for i, gene_1 in enumerate(gene_list_1[:-1]):
+ #TODO: Since there cannot be synthetic rescues we can assume
+ #that the whole row for a lethal deletion
+ #will be equal to that deletion.
+ if single_deletion_growth_dict[gene_1.id] < growth_tolerance:
+ tmp_solution = single_deletion_growth_dict[gene_1.id]
+ for j in range(i+1, number_of_genes):
+ deletion_array[j, i] = deletion_array[i, j] = tmp_solution
+ else:
+ for j, gene_2 in enumerate(gene_list_1[i+1:], i+1):
+ if single_deletion_growth_dict[gene_2.id] < growth_tolerance:
+ tmp_solution = single_deletion_growth_dict[gene_2.id]
+ else:
+ delete_model_genes(cobra_model, [gene_1, gene_2])
+ if cobra_model._trimmed:
+ if method.lower() == 'fba':
+ #Assumes that the majority of perturbations don't change
+ #reactions which is probably false
+ cobra_model.optimize(solver=solver, error_reporting=error_reporting)
+ the_status = cobra_model.solution.status
+ tmp_solution = cobra_model.solution.f
+ elif method.lower() == 'moma':
+ try:
+ moma_solution = moma(wt_model, cobra_model,
+ combined_model=combined_model,
+ solver=solver)
+ tmp_solution = float(moma_solution.pop('objective_value'))
+ the_status = moma_solution.pop('status')
+ combined_model = moma_solution.pop('combined_model')
+ del moma_solution
+ except:
+ tmp_solution = nan
+ the_status = 'failed'
+ if the_status not in ['opt', 'optimal'] and \
+ error_reporting:
+ print('%s / %s: %s status: %s'%(gene_1, gene_2, solver,
+ the_status))
+ #Reset the model to orginial form.
+ undelete_model_genes(cobra_model)
+ else:
+ tmp_solution = basal_f
+ deletion_array[j, i] = deletion_array[i, j] = tmp_solution
+
+ else:
+ deletion_array = zeros([len(gene_list_1), len(gene_list_2)])
+ #Now deal with the case where the gene lists are different
+ for i, gene_1 in enumerate(gene_list_1):
+ if single_deletion_growth_dict[gene_1.id] <= 0:
+ for j in range(len(gene_list_2)):
+ deletion_array[i, j] = 0.
+ else:
+ for j, gene_2 in enumerate(gene_list_2):
+ #Assume no such thing as a synthetic rescue
+ if single_deletion_growth_dict[gene_2.id] <= growth_tolerance:
+ tmp_solution = single_deletion_growth_dict[gene_2.id]
+ else:
+ delete_model_genes(cobra_model, [gene_1, gene_2])
+ if cobra_model._trimmed:
+ if method.lower() == 'fba':
+ cobra_model.optimize(solver=solver)
+ tmp_solution = cobra_model.solution.f
+ the_status = cobra_model.solution.status
+ elif method.lower() == 'moma':
+ try:
+ moma_solution = moma(wt_model, cobra_model,
+ combined_model=combined_model,
+ solver=solver)
+ tmp_solution = float(moma_solution.pop('objective_value'))
+ the_status = moma_solution.pop('status')
+ combined_model = moma_solution.pop('combined_model')
+ del moma_solution
+ except:
+ tmp_solution = nan
+ the_status = 'failed'
+ if the_status not in ['opt', 'optimal'] and \
+ error_reporting:
+ print('%s / %s: %s status: %s'%(repr(gene_1), repr(gene_2), solver,
+ cobra_model.solution.status))
+ #Reset the model to wt form
+ undelete_model_genes(cobra_model)
+ else:
+ tmp_solution = basal_f
+ deletion_array[i, j] = tmp_solution
+ if hasattr(gene_list_1, 'id'):
+ gene_list_1 = [x.id for x in gene_list_1]
+ if hasattr(gene_list_2, 'id'):
+ gene_list_2 = [x.id for x in gene_list_2]
+
+ return({'x': gene_list_1, 'y': gene_list_2, 'data': deletion_array})
+
diff --git a/cobra/flux_analysis/essentiality.py b/cobra/flux_analysis/essentiality.py
new file mode 100644
index 0000000..38cc06f
--- /dev/null
+++ b/cobra/flux_analysis/essentiality.py
@@ -0,0 +1,92 @@
+from __future__ import with_statement
+#cobra.flux_analysis.essentiality.py
+#runs flux variablity analysis on a Model object.
+from os import name as __name
+from warnings import warn
+if __name == 'java':
+ warn("moma is not supported on %s"%__name)
+ warn("flux_analysis.double_deletion is not supported on %s"%__name)
+ def moma(a, **kwargs):
+ raise Exception("moma is not supported on %s"%__name)
+
+ def double_deletion(a, **kwargs):
+ raise Exception("flux_analysis.double_deletion is not supported on %s"%__name)
+else:
+ try:
+ from cobra.flux_analysis.moma import moma
+ except:
+ warn("moma does not appear to be functional on your system")
+from cobra.manipulation import initialize_growth_medium
+def assess_medium_component_essentiality(cobra_model, the_components=None,
+ the_medium=None, medium_compartment='e', solver='glpk',
+ the_problem='return',
+ the_condition=None, method='fba'):
+ """Determines which components in an in silico medium are essential for growth in the
+ context of the remaining components.
+
+ cobra_model: A Model object.
+
+ the_components: None or a list of external boundary reactions that will be sequentially
+ disabled.
+
+ the_medium: Is None, a string, or a dictionary. If a string then the
+ initialize_growth_medium function expects that the_model has an
+ attribute dictionary called media_compositions, which is a dictionary of
+ dictionaries for various medium compositions. Where a medium
+ composition is a dictionary of external boundary reaction ids for the medium
+ components and the external boundary fluxes for each medium component.
+
+ medium_compartment: the compartment in which the boundary reactions supplying the medium
+ components exist
+
+ NOTE: that these fluxes must be negative because the convention is backwards means something
+ is feed into the system.
+
+ solver: 'glpk', 'gurobi', or 'cplex'
+
+ the_problem: Is None, 'return', or an LP model object for the solver.
+
+ returns:
+ essentiality_dict: A dictionary providing the maximum growth rate accessible when
+ the respective component is removed from the medium.
+
+ """
+ if method.lower() == 'moma':
+ wt_model = cobra_model.copy()
+ cobra_model = cobra_model.copy()
+
+ if isinstance(the_medium, str):
+ try:
+ the_medium = cobra_model.media_compositions[the_medium]
+ except:
+ raise Exception(the_medium + " is not in cobra_model.media_compositions")
+ if the_medium is not None:
+ initialize_growth_medium(cobra_model, the_medium, medium_compartment)
+ if the_components is None:
+ the_components = the_medium.keys()
+ if not the_components:
+ raise Exception("You need to specify the_components or the_medium")
+ essentiality_dict = {}
+ for the_component in the_components:
+ the_reaction = cobra_model.reactions.get_by_id(the_component)
+ original_lower_bound = float(the_reaction.lower_bound)
+ the_reaction.lower_bound = 0.
+ if method.lower() == 'fba':
+ cobra_model.optimize(solver=solver, the_problem=the_problem)
+ objective_value = cobra_model.solution.f
+ elif method.lower() == 'moma':
+ objective_value = moma(wt_model, cobra_model, solver=solver)['objective_value']
+ essentiality_dict[the_component] = objective_value
+ the_reaction.lower_bound = original_lower_bound
+
+ return(essentiality_dict)
+
+def deletion_analysis(cobra_model, the_medium=None, deletion_type='single',
+ work_directory=None, growth_cutoff=0.001,
+ the_problem='return', number_of_processes=6, element_type='gene',
+ solver='glpk', error_reporting=None, method='fba', element_list=None):
+ """Performs single and/or double deletion analysis on all the genes in the model. Provides
+ an interface to parallelize the deletion studies.
+
+ """
+ raise Exception("Deletion analysis has been dropped in favor of the single_deletion and double_deletion modules")
diff --git a/cobra/flux_analysis/loopless.py b/cobra/flux_analysis/loopless.py
new file mode 100644
index 0000000..9aad6df
--- /dev/null
+++ b/cobra/flux_analysis/loopless.py
@@ -0,0 +1,57 @@
+from ..core import Reaction, Metabolite
+from ..manipulation.modify import convert_to_irreversible
+from ..external.six import iteritems
+
+
+def construct_loopless_model(cobra_model):
+ """construct a loopless model
+
+ This adds MILP constraints to prevent flux from proceeding in a loop, as
+ done in http://dx.doi.org/10.1016/j.bpj.2010.12.3707
+ Please see the documentation for an explanation of the algorithm.
+
+ This must be solved with an MILP capable solver.
+
+ """
+ # copy the model and make it irreversible
+ model = cobra_model.copy()
+ convert_to_irreversible(model)
+ max_ub = max(model.reactions.list_attr("upper_bound"))
+ # a dict for storing S^T
+ thermo_stoic = {"thermo_var_" + metabolite.id: {}
+ for metabolite in model.metabolites}
+ # Slice operator is so that we don't get newly added metabolites
+ original_metabolites = model.metabolites[:]
+ for reaction in model.reactions[:]:
+ # Boundary reactions are not subjected to these constraints
+ if len(reaction._metabolites) == 1:
+ continue
+ # populate the S^T dict
+ bound_id = "thermo_bound_" + reaction.id
+ for met, stoic in iteritems(reaction._metabolites):
+ thermo_stoic["thermo_var_" + met.id][bound_id] = stoic
+ # I * 1000 > v --> I * 1000 - v > 0
+ reaction_ind = Reaction(reaction.id + "_indicator")
+ reaction_ind.variable_kind = "integer"
+ reaction_ind.upper_bound = 1
+ reaction_ub = Metabolite(reaction.id + "_ind_ub")
+ reaction_ub._constraint_sense = "G"
+ reaction.add_metabolites({reaction_ub: -1})
+ reaction_ind.add_metabolites({reaction_ub: max_ub})
+ # This adds a compensating term for 0 flux reactions, so we get
+ # S^T x - (1 - I) * 1001 < -1 which becomes
+ # S^T x < 1000 for 0 flux reactions and
+ # S^T x < -1 for reactions with nonzero flux.
+ reaction_bound = Metabolite(bound_id)
+ reaction_bound._constraint_sense = "L"
+ reaction_bound._bound = max_ub
+ reaction_ind.add_metabolites({reaction_bound: max_ub + 1})
+ model.add_reaction(reaction_ind)
+ for metabolite in original_metabolites:
+ metabolite_var = Reaction("thermo_var_" + metabolite.id)
+ metabolite_var.lower_bound = -max_ub
+ model.add_reaction(metabolite_var)
+ metabolite_var.add_metabolites(
+ {model.metabolites.get_by_id(k): v
+ for k, v in iteritems(thermo_stoic[metabolite_var.id])})
+ return model
diff --git a/cobra/flux_analysis/moma.py b/cobra/flux_analysis/moma.py
new file mode 100644
index 0000000..0f37177
--- /dev/null
+++ b/cobra/flux_analysis/moma.py
@@ -0,0 +1,245 @@
+from __future__ import print_function
+#cobra.flux_analysis.moma.py: Runs the minimization of metabolic
+#adjustment method described in Segre et al 2002 PNAS 99(23): 15112-7
+from os import name as __name
+from sys import modules as __modules
+from warnings import warn
+if __name == 'java':
+ raise Exception("%s is not yet supported on jython"%__modules[__name__])
+from copy import deepcopy
+from time import time
+from math import ceil, floor
+
+#The next four imports need to be dealt with to obtain jython compatibilty
+from numpy import array, hstack, vstack, matrix, sum
+from scipy.sparse import eye, lil_matrix, dok_matrix
+from scipy.sparse import hstack as s_hstack
+from scipy.sparse import vstack as s_vstack
+
+from ..core import Reaction, Metabolite
+from ..manipulation import initialize_growth_medium, delete_model_genes
+from ..manipulation.modify import convert_to_irreversible
+from ..external.six import iteritems
+
+from warnings import warn
+
+def moma(wt_model, mutant_model, objective_sense='maximize', solver=None,
+ tolerance_optimality=1e-8, tolerance_feasibility=1e-8,
+ minimize_norm=False, the_problem='return', lp_method=0,
+ combined_model=None, norm_type='euclidean'):
+ """Runs the minimization of metabolic adjustment method described in
+ Segre et al 2002 PNAS 99(23): 15112-7.
+
+ wt_model: A cobra.Model object
+
+ mutant_model: A cobra.Model object with different reaction bounds vs wt_model.
+ To simulate deletions
+
+ objective_sense: 'maximize' or 'minimize'
+
+ solver: 'gurobi', 'cplex', or 'glpk'. Note: glpk cannot be used with
+ norm_type 'euclidean'
+
+ tolerance_optimality: Solver tolerance for optimality.
+
+ tolerance_feasibility: Solver tolerance for feasibility.
+
+ the_problem: None or a problem object for the specific solver that can be
+ used to hot start the next solution.
+
+ lp_method: The method to use for solving the problem. Depends on the solver. See
+ the cobra.flux_analysis.solvers.py file for more info.
+ For norm_type == 'euclidean':
+ the primal simplex works best for the test model (gurobi: lp_method=0, cplex: lp_method=1)
+
+ combined_model: an output from moma that represents the combined optimization
+ to be solved. when this is not none. only assume that bounds have changed
+ for the mutant or wild-type. This saves 0.2 seconds in stacking matrices.
+
+
+ NOTE: Current function makes too many assumptions about the structures of the models
+
+
+ """
+ if solver is None:
+ if norm_type == "euclidiean":
+ solver = get_solver_name(qp=True)
+ else:
+ solver = get_solver_name() # linear is not even implemented yet
+ if combined_model is not None or the_problem not in ['return']:
+ warn("moma currently does not support reusing models or problems. " +\
+ "continuing without them")
+ combined_model = None
+ the_problem = 'return'
+ if solver.lower() == 'cplex' and lp_method == 0:
+ #print 'for moma, solver method 0 is very slow for cplex. changing to method 1'
+ lp_method = 1
+ if solver.lower() == 'glpk' and norm_type == 'euclidean':
+ try:
+ from gurobipy import Model
+ solver = 'gurobi'
+ warn("GLPK can't solve quadratic problems like MOMA. Switched solver to %s"%solver)
+ except:
+ warn("GLPK can't solve quadratic problems like MOMA. Switching to linear MOMA")
+
+ if norm_type == 'euclidean':
+ #Reusing the basis can get the solver stuck.
+ reuse_basis = False
+ if combined_model and combined_model.norm_type != norm_type:
+ print('Cannot use combined_model.norm_type = %s with user-specified norm type'%(combined_model.norm_type,
+ norm_type))
+ print('Defaulting to user-specified norm_type')
+ combined_model = None
+
+
+
+ number_of_reactions_in_common = len(set([x.id for x in wt_model.reactions]).intersection([x.id for x in mutant_model.reactions]))
+ number_of_reactions = len(wt_model.reactions) + len(mutant_model.reactions)
+
+ #Get the optimal wt objective value and adjust based on optimality tolerances
+ wt_model.optimize(solver=solver)
+ wt_optimal = deepcopy(wt_model.solution.f)
+ if objective_sense == 'maximize':
+ wt_optimal = floor(wt_optimal/tolerance_optimality)*tolerance_optimality
+ else:
+ wt_optimal = ceil(wt_optimal/tolerance_optimality)*tolerance_optimality
+ if norm_type == 'linear':
+ raise Exception('linear MOMA is not currently implmented')
+ quadratic_component = None
+ if minimize_norm:
+ raise Exception('minimize_norm is not currently implemented')
+ #just worry about the flux distribution and not the objective from the wt
+ combined_model = mutant_model.copy()
+ #implement this: combined_model.reactions[:].objective_coefficients = -wt_solution.x_dict
+ else:
+ #Construct a problem that attempts to maximize the objective in the WT model while
+ #solving the quadratic problem. This new problem is constructed to try to find
+ #a solution for the WT model that lies close to the mutant model. There are
+ #often multiple equivalent solutions with M matrices and the one returned
+ #by a simple cobra_model.optimize call may be too far from the mutant.
+ #This only needs to be adjusted if we update mutant_model._S after deleting reactions
+ if not combined_model:
+ #Collect the set of wt reactions contributing to the objective.
+ objective_reaction_coefficient_dict = dict([(x.id, x.objective_coefficient)
+ for x in wt_model.reactions
+ if x.objective_coefficient])
+
+
+ combined_model = construct_difference_model(wt_model, mutant_model, norm_type)
+ #Add in the virtual objective metabolite to constrain the wt_model to the space where
+ #the objective was maximal
+ objective_metabolite = Metabolite('wt_optimal')
+ objective_metabolite._bound = wt_optimal
+ if objective_sense == 'maximize':
+ objective_metabolite._constraint_sense = 'G'
+ else:
+ objective_metabolite._constraint_sense = 'L'
+
+ #TODO: this couples the wt_model objective reaction to the virtual metabolite
+ #Currently, assumes a single objective reaction; however, this may be extended
+ [combined_model.reactions.get_by_id(k).add_metabolites({objective_metabolite: v})
+ for k, v in objective_reaction_coefficient_dict.items()]
+
+
+
+
+
+
+ if norm_type == 'euclidean':
+ #Makes assumptions about the structure of combined model
+ quadratic_component = s_vstack((lil_matrix((number_of_reactions, number_of_reactions + number_of_reactions_in_common )),
+ s_hstack((lil_matrix((number_of_reactions_in_common, number_of_reactions)),
+ eye(number_of_reactions_in_common,number_of_reactions_in_common)))))
+
+ elif norm_type == 'linear':
+ quadratic_component = None
+
+ combined_model.norm_type = norm_type
+ cobra_model = combined_model
+
+ the_problem = combined_model.optimize(objective_sense='minimize',
+ quadratic_component=quadratic_component,
+ solver=solver,
+ tolerance_optimality=tolerance_optimality,
+ tolerance_feasibility=tolerance_feasibility,
+ lp_method=lp_method, reuse_basis=reuse_basis)
+
+ if combined_model.solution.status != 'optimal':
+ warn('optimal moma solution not found: solver status %s'%combined_model.solution.status +\
+ ' returning the problem, the_combined model, and the quadratic component for trouble shooting')
+ return(the_problem, combined_model, quadratic_component)
+
+ solution = combined_model.solution
+ mutant_dict = {}
+ #Might be faster to quey based on mutant_model.reactions with the 'mutant_' prefix added
+ _reaction_list = [x for x in combined_model.reactions if x.id.startswith('mutant_')]
+ mutant_f = sum([mutant_model.reactions.get_by_id(x.id[len('mutant_'):]).objective_coefficient *
+ x.x for x in _reaction_list])
+ mutant_dict['objective_value'] = mutant_f
+ wild_type_flux_total = sum([abs(solution.x_dict[x.id]) for x in wt_model.reactions])
+ mutant_flux_total = sum(abs(x.x) for x in _reaction_list)
+ #Need to use the new solution as there are multiple ways to achieve an optimal solution in
+ #simulations with M matrices.
+ mutant_dict['status'] = solution.status
+ #TODO: Deal with maximize / minimize issues for a reversible model that's been converted to irreversible
+ mutant_dict['flux_difference'] = flux_difference = sum([(solution.x_dict[x.id[len('mutant_'):]]
+ - x.x)**2 for x in _reaction_list])
+ mutant_dict['the_problem'] = the_problem
+ mutant_dict['combined_model'] = combined_model
+
+ del wt_model, mutant_model, quadratic_component, solution
+ return(mutant_dict)
+
+
+def construct_difference_model(model_1, model_2, norm_type='euclidean'):
+ """Combine two models into a larger model that is designed to calculate differences
+ between the models
+
+ """
+ #Get index mappings
+ common_dict = {}
+ #Using copies of the models so things are modified above
+ combined_model = model_1 = model_1.copy()
+ model_2 = model_2.copy()
+ for reaction_1 in model_1.reactions:
+ try:
+ reaction_2 = model_2.reactions.get_by_id(reaction_1.id)
+ common_dict[reaction_1] = reaction_2
+ except:
+ continue
+
+ #Add a prefix in front of the mutant_model metabolites and reactions to prevent
+ #name collisions in DictList
+ for the_dict_list in [model_2.metabolites,
+ model_2.reactions]:
+ [setattr(x, 'id', 'mutant_%s'%x.id)
+ for x in the_dict_list]
+ the_dict_list._generate_index() #Update the DictList.dicts
+
+
+ combined_model.add_reactions(model_2.reactions)
+ [setattr(x, 'objective_coefficient', 0.)
+ for x in combined_model.reactions]
+ #Add in the difference reactions. The mutant reactions and metabolites are already added.
+ #This must be a list to maintain the correct order when adding the difference_metabolites
+ difference_reactions = [] #Add the difference reactions at the end to speed things up
+ difference_metabolites = []
+ for reaction_1, reaction_2 in iteritems(common_dict):
+ reaction_1._difference_partner = reaction_2
+ reaction_2._difference_partner = reaction_1
+ difference_reaction = Reaction('difference_%s'%reaction_1.id)
+ difference_reactions.append(difference_reaction)
+ difference_reaction.upper_bound = 100000
+ difference_reaction.lower_bound = -1* difference_reaction.upper_bound
+ difference_metabolite = Metabolite('difference_%s'%reaction_1.id)
+ difference_metabolites.append(difference_metabolite)
+ if norm_type == 'linear':
+ difference_metabolite._constraint_sense = 'G'
+ reaction_1.add_metabolites({difference_metabolite: -1.}, add_to_container_model=False)
+ reaction_2.add_metabolites({difference_metabolite: 1.}, add_to_container_model=False)
+ difference_reaction.add_metabolites({difference_metabolite: 1.}, add_to_container_model=False)
+
+ combined_model.add_metabolites(difference_metabolites)
+ combined_model.add_reactions(difference_reactions)
+ return(combined_model)
+
diff --git a/cobra/flux_analysis/objective.py b/cobra/flux_analysis/objective.py
new file mode 100644
index 0000000..7e92702
--- /dev/null
+++ b/cobra/flux_analysis/objective.py
@@ -0,0 +1,45 @@
+from warnings import warn
+warn("cobra.flux_analysis.objective is deprecated.")
+
+#cobra.flux_analysis.objective.py
+#functions for analyzing / creating objective functions
+from ..core.Reaction import Reaction
+from ..manipulation import initialize_growth_medium
+import sys
+if hasattr(sys, 'maxsize') and sys.maxsize > 2**32:
+ try:
+ from numpy import int64, int32
+ except:
+ int32 = int64 = int
+else:
+ int32 = int
+ int64 = int
+
+
+
+def assess_objective(model, objective=None,
+ objective_cutoff=0.001, growth_medium=None):
+ """DEPRECATED
+ """
+ from warnings import warn
+ warn("cobra.flux_analysis.objective.assess_objective is deprecated. " +\
+ "Please use cobra.flux_analysis.reaction.assess instead")
+ return(False)
+
+
+
+
+def update_objective(cobra_model, the_objectives):
+ """Revised to take advantage of the new Reaction classes.
+
+ cobra_model: A cobra.Model
+
+ the_objectives: A list or a dictionary. If a list then
+ a list of reactions for which the coefficient in the
+ linear objective is set as 1. If a dictionary then the
+ key is the reaction and the value is the linear coefficient
+ for the respective reaction.
+
+ """
+ return cobra_model.change_objective(the_objectives)
+
diff --git a/cobra/flux_analysis/parsimonious.py b/cobra/flux_analysis/parsimonious.py
new file mode 100644
index 0000000..cb6ca49
--- /dev/null
+++ b/cobra/flux_analysis/parsimonious.py
@@ -0,0 +1,65 @@
+from ..manipulation import modify
+
+
+def optimize_minimal_flux(model, already_irreversible=False,
+ **optimize_kwargs):
+ """Perform basic pFBA (parsimonius FBA) and minimize total flux.
+
+ The function attempts to act as a drop-in replacement for optimize. It
+ will make the reaction reversible and perform an optimization, then
+ force the objective value to remain the same and minimize the total
+ flux. Finally, it will convert the reaction back to the irreversible
+ form it was in before. See http://dx.doi.org/10.1038/msb.2010.47
+
+ model : :class:`~cobra.core.Model` object
+
+ already_irreversible : bool, optional
+ By default, the model is converted to an irreversible one.
+ However, if the model is already irreversible, this step can be
+ skipped.
+
+ """
+ if "new_objective" in optimize_kwargs:
+ raise ValueError("Use objective coefficients, not new_objective")
+ if not already_irreversible:
+ modify.convert_to_irreversible(model)
+ model.optimize(**optimize_kwargs)
+ # if the problem is infeasible
+ if model.solution.f is None:
+ raise Exception("model could not be solved")
+ old_f = model.solution.f
+ old_objective_coefficients = {}
+ old_lower_bounds = {}
+ old_upper_bounds = {}
+ for reaction in model.reactions:
+ # if the reaction has a nonzero objective coefficient, then
+ # the same flux should be maintained through that reaction
+ if reaction.objective_coefficient != 0:
+ old_objective_coefficients[reaction] = \
+ reaction.objective_coefficient
+ old_lower_bounds[reaction] = reaction.lower_bound
+ old_upper_bounds[reaction] = reaction.upper_bound
+ x = model.solution.x_dict[reaction.id]
+ reaction.lower_bound = x
+ reaction.upper_bound = x
+ reaction.objective_coefficient = 0
+ else:
+ reaction.objective_coefficient = 1
+ # set to minimize flux
+ optimize_kwargs["objective_sense"] = "minimize"
+ model.optimize(**optimize_kwargs)
+ # make the model back the way it was
+ for reaction in model.reactions:
+ if reaction in old_objective_coefficients:
+ reaction.objective_coefficient = \
+ old_objective_coefficients[reaction]
+ reaction.lower_bound = old_lower_bounds[reaction]
+ reaction.upper_bound = old_upper_bounds[reaction]
+ else:
+ reaction.objective_coefficient = 0
+ # if the minimization problem was successful
+ if model.solution.f is not None:
+ model.solution.f = old_f
+ if not already_irreversible:
+ modify.revert_to_reversible(model)
+ return model.solution
diff --git a/cobra/flux_analysis/phenotype_phase_plane.py b/cobra/flux_analysis/phenotype_phase_plane.py
new file mode 100644
index 0000000..b7deab8
--- /dev/null
+++ b/cobra/flux_analysis/phenotype_phase_plane.py
@@ -0,0 +1,283 @@
+from numpy import linspace, zeros, array, meshgrid, abs, empty, arange, \
+ int32, unravel_index
+from multiprocessing import Pool
+
+from ..solvers import solver_dict, get_solver_name
+
+# attempt to import plotting libraries
+try:
+ from matplotlib import pyplot
+ from mpl_toolkits.mplot3d import axes3d
+except ImportError:
+ pyplot = None
+ axes3d = None
+mlab = None # mayavi may crash python
+try: # for prettier colors
+ from brewer2mpl import get_map
+except:
+ get_map = None
+
+
+class phenotypePhasePlaneData:
+ """class to hold results of a phenotype phase plane analysis"""
+ def __init__(self,
+ reaction1_name, reaction2_name,
+ reaction1_range_max, reaction2_range_max,
+ reaction1_npoints, reaction2_npoints):
+ self.reaction1_name = reaction1_name
+ self.reaction2_name = reaction2_name
+ self.reaction1_range_max = reaction1_range_max
+ self.reaction2_range_max = reaction2_range_max
+ self.reaction1_npoints = reaction1_npoints
+ self.reaction2_npoints = reaction2_npoints
+ self.reaction1_fluxes = linspace(0, reaction1_range_max,
+ reaction1_npoints)
+ self.reaction2_fluxes = linspace(0, reaction2_range_max,
+ reaction2_npoints)
+ self.growth_rates = zeros((reaction1_npoints, reaction2_npoints))
+ self.shadow_prices1 = zeros((reaction1_npoints, reaction2_npoints))
+ self.shadow_prices2 = zeros((reaction1_npoints, reaction2_npoints))
+ self.segments = zeros(self.growth_rates.shape, dtype=int32)
+ self.phases = []
+
+ def plot(self):
+ """plot the phenotype phase plane in 3D using any available backend"""
+ if pyplot is not None:
+ self.plot_matplotlib()
+ elif mlab is not None:
+ self.plot_mayavi()
+ else:
+ raise ImportError("No suitable 3D plotting package found")
+
+ def plot_matplotlib(self, theme="Paired", scale_grid=False):
+ """Use matplotlib to plot a phenotype phase plane in 3D.
+
+ theme: color theme to use (requires brewer2mpl)
+
+ returns: maptlotlib 3d subplot object"""
+ if pyplot is None:
+ raise ImportError("Error importing matplotlib 3D plotting")
+ colors = empty(self.growth_rates.shape, dtype="|S7")
+ n_segments = self.segments.max()
+ # pick colors
+ if get_map is None:
+ color_list = ['#A6CEE3', '#1F78B4', '#B2DF8A', '#33A02C',
+ '#FB9A99', '#E31A1C', '#FDBF6F', '#FF7F00',
+ '#CAB2D6', '#6A3D9A', '#FFFF99', '#B15928']
+ else:
+ color_list = get_map(theme, 'Qualitative', n_segments).hex_colors
+ if n_segments > len(color_list):
+ from warnings import warn
+ warn("not enough colors to color all detected phases")
+ if n_segments > 0 and n_segments <= len(color_list):
+ for i in range(n_segments):
+ colors[self.segments == (i + 1)] = color_list[i]
+ else:
+ colors[:, :] = 'b'
+ if scale_grid:
+ # grid wires should not have more than ~20 points
+ xgrid_scale = int(self.reaction1_npoints / 20)
+ ygrid_scale = int(self.reaction2_npoints / 20)
+ else:
+ xgrid_scale, ygrid_scale = (1, 1)
+ figure = pyplot.figure()
+ xgrid, ygrid = meshgrid(self.reaction1_fluxes, self.reaction2_fluxes)
+ axes = figure.add_subplot(111, projection="3d")
+ xgrid = xgrid.transpose()
+ ygrid = ygrid.transpose()
+ axes.plot_surface(xgrid, ygrid, self.growth_rates, rstride=1,
+ cstride=1, facecolors=colors, linewidth=0,
+ antialiased=False)
+ axes.plot_wireframe(xgrid, ygrid, self.growth_rates, color="black",
+ rstride=xgrid_scale, cstride=ygrid_scale)
+ axes.set_xlabel(self.reaction1_name)
+ axes.set_ylabel(self.reaction2_name)
+ axes.set_zlabel("Growth rate")
+ axes.view_init(elev=30, azim=-135)
+ return axes
+
+ def plot_mayavi(self):
+ """Use mayavi to plot a phenotype phase plane in 3D.
+ The resulting figure will be quick to interact with in real time,
+ but might be difficult to save as a vector figure.
+ returns: mlab figure object"""
+ from mayavi import mlab
+ figure = mlab.figure(bgcolor=(1, 1, 1), fgcolor=(0, 0, 0))
+ figure.name = "Phenotype Phase Plane"
+ max = 10.0
+ xmax = self.reaction1_fluxes.max()
+ ymax = self.reaction2_fluxes.max()
+ zmax = self.growth_rates.max()
+ xgrid, ygrid = meshgrid(self.reaction1_fluxes, self.reaction2_fluxes)
+ xgrid = xgrid.transpose()
+ ygrid = ygrid.transpose()
+ xscale = max / xmax
+ yscale = max / ymax
+ zscale = max / zmax
+ mlab.surf(xgrid * xscale, ygrid * yscale, self.growth_rates * zscale,
+ representation="wireframe", color=(0, 0, 0), figure=figure)
+ mlab.mesh(xgrid * xscale, ygrid * yscale, self.growth_rates * zscale,
+ scalars=self.shadow_prices1 + self.shadow_prices2,
+ resolution=1, representation="surface", opacity=0.75,
+ figure=figure)
+ # draw axes
+ mlab.outline(extent=(0, max, 0, max, 0, max))
+ mlab.axes(opacity=0, ranges=[0, xmax, 0, ymax, 0, zmax])
+ mlab.xlabel(self.reaction1_name)
+ mlab.ylabel(self.reaction2_name)
+ mlab.zlabel("Growth rates")
+ return figure
+
+ def segment(self, threshold=0.01):
+ """attempt to segment the data and identify the various phases"""
+ self.segments *= 0
+ # each entry in phases will consist of the following tuple
+ # ((x, y), shadow_price1, shadow_price2)
+ self.phases = []
+ # initialize the area to be all False
+ covered_area = (self.growth_rates * 0 == 1)
+ # as long as part of the area has not been covered
+ segment_id = 0
+ while self.segments.min() == 0:
+ segment_id += 1
+ # i and j are indices for a current point which has not been
+ # assigned a segment yet
+
+ i, j = unravel_index(self.segments.argmin(), self.segments.shape)
+ # update the segment id for any point with a similar shadow price
+ # to the current point
+ self.segments[
+ (abs(self.shadow_prices1 - self.shadow_prices1[i, j])
+ < threshold) *
+ (abs(self.shadow_prices2 - self.shadow_prices2[i, j])
+ < threshold)] += segment_id
+ # add the current point as one of the phases
+ self.phases.append((
+ (self.reaction1_fluxes[i], self.reaction2_fluxes[j]),
+ self.shadow_prices1[i, j], self.shadow_prices2[i, j]))
+
+
+def _calculate_subset(arguments):
+ """Calculate a subset of the phenotype phase plane data.
+ Store each result tuple as:
+ (i, j, growth_rate, shadow_price1, shadow_price2)"""
+
+ model = arguments["model"]
+ reaction1_fluxes = arguments["reaction1_fluxes"]
+ reaction2_fluxes = arguments["reaction2_fluxes"]
+ metabolite1_name = arguments["metabolite1_name"]
+ metabolite2_name = arguments["metabolite2_name"]
+ index1 = arguments["index1"]
+ index2 = arguments["index2"]
+ i_list = arguments["i_list"]
+ j_list = arguments["j_list"]
+ tolerance = arguments["tolerance"]
+ solver = solver_dict[arguments["solver"]]
+
+ results = []
+ reaction1 = model.reactions[index1]
+ reaction2 = model.reactions[index2]
+ problem = solver.create_problem(model)
+ solver.solve_problem(problem)
+ for a, flux1 in enumerate(reaction1_fluxes):
+ i = i_list[a]
+ # flux is actually negative for uptake. Also some solvers require
+ # float instead of numpy.float64
+ flux1 = float(-1 * flux1)
+ # change bounds on reaction 1
+ solver.change_variable_bounds(problem, index1, flux1 - tolerance, flux1
+ + tolerance)
+ for b, flux2 in enumerate(reaction2_fluxes):
+ j = j_list[b]
+ flux2 = float(-1 * flux2) # same story as flux1
+ # change bounds on reaction 2
+ solver.change_variable_bounds(problem, index2, flux2 - tolerance,
+ flux2 + tolerance)
+ # solve the problem and save results
+ solver.solve_problem(problem)
+ solution = solver.format_solution(problem, model)
+ if solution is not None and solution.status == "optimal":
+ results.append((i, j, solution.f,
+ solution.y_dict[metabolite1_name],
+ solution.y_dict[metabolite2_name]))
+ else:
+ results.append((i, j, 0, 0, 0))
+ # reset reaction 2 bounds
+ solver.change_variable_bounds(problem, index2,
+ float(reaction2.lower_bound),
+ float(reaction2.upper_bound))
+ # reset reaction 1 bounds
+ solver.change_variable_bounds(problem, index1,
+ float(reaction1.lower_bound),
+ float(reaction1.upper_bound))
+ return results
+
+
+def calculate_phenotype_phase_plane(
+ model, reaction1_name, reaction2_name,
+ reaction1_range_max=20, reaction2_range_max=20,
+ reaction1_npoints=50, reaction2_npoints=50,
+ solver=None, n_processes=1, tolerance=1e-6):
+ """calculates the growth rates while varying the uptake rates for two
+ reactions.
+
+ returns: an object containing the growth rates for the uptake rates.
+ To plot the result, call the plot function of the returned object.
+
+ Example:
+ data = calculate_phenotype_phase_plane(my_model, "EX_foo", "EX_bar")
+ data.plot()
+ """
+ if solver is None:
+ solver = get_solver_name()
+ data = phenotypePhasePlaneData(
+ str(reaction1_name), str(reaction2_name),
+ reaction1_range_max, reaction2_range_max,
+ reaction1_npoints, reaction2_npoints)
+ # find the objects for the reactions and metabolites
+ index1 = model.reactions.index(
+ model.reactions.get_by_id(data.reaction1_name))
+ index2 = model.reactions.index(
+ model.reactions.get_by_id(data.reaction2_name))
+ metabolite1_name = \
+ str(model.reactions.get_by_id(reaction1_name)._metabolites.keys()[0])
+ metabolite2_name = \
+ str(model.reactions.get_by_id(reaction2_name)._metabolites.keys()[0])
+ if n_processes > reaction1_npoints: # limit the number of processes
+ n_processes = reaction1_npoints
+ range_add = reaction1_npoints / n_processes
+ # prepare the list of arguments for each _calculate_subset call
+ arguments_list = []
+ i = arange(reaction1_npoints)
+ j = arange(reaction2_npoints)
+ for n in range(n_processes):
+ start = n * range_add
+ if n != n_processes - 1:
+ r1_range = data.reaction1_fluxes[start:start + range_add]
+ i_list = i[start:start + range_add]
+ else:
+ r1_range = data.reaction1_fluxes[start:]
+ i_list = i[start:]
+ arguments_list.append({
+ "model": model,
+ "index1": index1, "index2": index2,
+ "metabolite1_name": metabolite1_name,
+ "metabolite2_name": metabolite2_name,
+ "reaction1_fluxes": r1_range,
+ "reaction2_fluxes": data.reaction2_fluxes.copy(),
+ "i_list": i_list, "j_list": j.copy(),
+ "tolerance": tolerance, "solver": solver})
+ if n_processes > 1:
+ p = Pool(n_processes)
+ results = list(p.map(_calculate_subset, arguments_list))
+ else:
+ results = [_calculate_subset(arguments_list[0])]
+ for result_list in results:
+ for result in result_list:
+ i = result[0]
+ j = result[1]
+ data.growth_rates[i, j] = result[2]
+ data.shadow_prices1[i, j] = result[3]
+ data.shadow_prices2[i, j] = result[4]
+ data.segment()
+ return data
diff --git a/cobra/flux_analysis/reaction.py b/cobra/flux_analysis/reaction.py
new file mode 100644
index 0000000..a81b7d4
--- /dev/null
+++ b/cobra/flux_analysis/reaction.py
@@ -0,0 +1,157 @@
+#cobra.flux_analysis.reaction.py
+#functions for analyzing / creating objective functions
+from ..core.Reaction import Reaction
+
+def assess(model, reaction, flux_coefficient_cutoff=0.001):
+ """Assesses the capacity of the model to produce the precursors for the reaction
+ and absorb the production of the reaction while the reaction is operating at, or
+ above, the specified cutoff.
+
+ model: A :class:`~cobra.core.Model` object
+
+ reaction: A :class:`~cobra.core.Reaction` object
+
+
+ flux_coefficient_cutoff: Float. The minimum flux that reaction must carry to
+ be considered active.
+
+ returns: True if the model can produce the precursors and absorb the products
+ for the reaction operating at, or above, flux_coefficient_cutoff. Otherwise,
+ a dictionary of {'precursor': Status, 'product': Status}. Where Status is the
+ results from assess_precursors and assess_products,
+ respectively.
+
+ """
+ reaction = model.reactions.get_by_id(reaction.id)
+ model.optimize(new_objective={reaction: 1})
+ if model.solution.f >= flux_coefficient_cutoff:
+ return(True)
+ else:
+ results = {}
+ results['precursors'] = assess_precursors(model, reaction, flux_coefficient_cutoff)
+ results['products'] = assess_products(model, reaction, flux_coefficient_cutoff)
+ return(results)
+
+def assess_precursors(model, reaction, flux_coefficient_cutoff=0.001):
+ """Assesses the ability of the model to provide sufficient precursors for
+ a reaction operating at, or beyond, the specified cutoff.
+
+ model: A :class:`~cobra.core.Model` object
+
+ reaction: A :class:`~cobra.core.Reaction` object
+
+
+ flux_coefficient_cutoff: Float. The minimum flux that reaction must carry to
+ be considered active.
+
+ returns: True if the precursors can be simultaneously produced at the specified cutoff. False, if the model has
+ the capacity to produce each individual precursor at the specified threshold but not all precursors at the
+ required level simultaneously. Otherwise a dictionary of the required and the produced
+ fluxes for each reactant that is not produced in sufficient quantities.
+
+ """
+ model = model.copy()
+ reaction = model.reactions.get_by_id(reaction.id)
+ model.optimize(new_objective={reaction: 1})
+ if model.solution.f >= flux_coefficient_cutoff:
+ return(True)
+ #
+ simulation_results = {}
+ #build the sink reactions and add all at once
+ sink_reactions = {}
+ for the_component in reaction.get_reactants():
+ #add in a sink reaction for each component
+ sink_reaction = Reaction('test_sink_%s'%the_component.id)
+ #then simulate production ability
+ #then check it can exceed objective cutoff * component stoichiometric
+ #coefficient.
+ coefficient = reaction.get_coefficient(the_component)
+ sink_reaction.add_metabolites({the_component: coefficient})
+ sink_reaction.upper_bound = 1000
+ sink_reactions[sink_reaction] = (the_component, coefficient)
+ #First assess whether all precursors can pbe produced simultaneously
+ super_sink = Reaction("super_sink")
+ for reaction in sink_reactions:
+ super_sink += reaction
+ super_sink.id = 'super_sink'
+ model.add_reactions(sink_reactions.keys() + [super_sink])
+ model.optimize(new_objective=super_sink)
+ if flux_coefficient_cutoff <= model.solution.f:
+ return(True)
+
+ #Otherwise assess the ability of the model to produce each precursor individually.
+ #Now assess the ability of the model to produce each reactant for a reaction
+ for sink_reaction, (component, coefficient) in sink_reactions.iteritems():
+ model.optimize(new_objective=sink_reaction) #Calculate the maximum amount of the
+ #metabolite that can be produced.
+ if flux_coefficient_cutoff > model.solution.f:
+ #Scale the results to a single unit
+ simulation_results.update({component:{'required':flux_coefficient_cutoff/abs(coefficient),
+ 'produced':model.solution.f/abs(coefficient)}})
+ if len(simulation_results) == 0:
+ simulation_results = False
+ return(simulation_results)
+
+def assess_products(model, reaction, flux_coefficient_cutoff=0.001):
+ """Assesses whether the model has the capacity to absorb the products of a reaction
+ at a given flux rate. Useful for identifying which components might be blocking
+ a reaction from achieving a specific flux rate.
+
+ model: A :class:`~cobra.core.Model` object
+
+ reaction: A :class:`~cobra.core.Reaction` object
+
+ flux_coefficient_cutoff: Float. The minimum flux that reaction must carry to
+ be considered active.
+
+ returns: True if the model has the capacity to absorb all the reaction products being
+ simultaneously given the specified cutoff. False, if the model has
+ the capacity to absorb each individual product but not all products at the
+ required level simultaneously. Otherwise a dictionary of the required and the
+ capacity fluxes for each product that is not absorbed in sufficient quantities.
+
+
+ """
+ model = model.copy()
+ reaction = model.reactions.get_by_id(reaction.id)
+ model.optimize(new_objective={reaction: 1})
+ if model.solution.f >= flux_coefficient_cutoff:
+ return(True)
+ #
+ simulation_results = {}
+ #build the sink reactions and add all at once
+ source_reactions = {}
+ for the_component in reaction.get_products():
+ #add in a sink reaction for each component
+ source_reaction = Reaction('test_source_%s'%the_component.id)
+ #then simulate production ability
+ #then check it can exceed objective cutoff * component stoichiometric
+ #coefficient.
+ coefficient = reaction.get_coefficient(the_component)
+ source_reaction.add_metabolites({the_component: coefficient})
+ source_reaction.upper_bound = 1000
+ source_reactions[source_reaction] = (the_component, coefficient)
+ #
+ super_source = Reaction('super_source')
+ for reaction in source_reactions:
+ super_source += reaction
+ super_source.id = 'super_source'
+ model.add_reactions(source_reactions.keys() + [super_source])
+ model.optimize(new_objective=super_source)
+ if flux_coefficient_cutoff <= model.solution.f:
+ return(True)
+
+ #Now assess the ability of the model to produce each reactant for a reaction
+ for source_reaction, (component, coefficient) in source_reactions.iteritems():
+ model.optimize(new_objective=source_reaction) #Calculate the maximum amount of the
+ #metabolite that can be produced.
+ if flux_coefficient_cutoff > model.solution.f:
+ #Scale the results to a single unit
+ simulation_results.update({component:{'required':flux_coefficient_cutoff/abs(coefficient),
+ 'capacity':model.solution.f/abs(coefficient)}})
+ if len(simulation_results) == 0:
+ simulation_results = False
+ return(simulation_results)
+
+
+
diff --git a/cobra/flux_analysis/single_deletion.py b/cobra/flux_analysis/single_deletion.py
new file mode 100644
index 0000000..d5793a8
--- /dev/null
+++ b/cobra/flux_analysis/single_deletion.py
@@ -0,0 +1,347 @@
+from time import time
+from warnings import warn
+from copy import deepcopy
+
+from ..external.six import string_types, iteritems
+
+from ..manipulation import delete_model_genes, undelete_model_genes
+from ..manipulation.delete import find_gene_knockout_reactions
+from ..solvers import solver_dict, get_solver_name
+
+
+nan = float('nan')
+
+
+try:
+ from .moma import moma
+except Exception as e:
+ def moma(**kwargs):
+ warn("moma is currently not functional")
+
+
+def single_deletion(cobra_model, element_list=None,
+ method='fba', element_type='gene', solver=None):
+ """Wrapper for single_gene_deletion and the single_reaction_deletion
+ functions
+
+
+ cobra_model: a cobra.Model object
+
+ element_list: Is None or a list of elements (genes or reactions) to
+ delete.
+
+ method: 'fba' or 'moma'
+
+ the_problem: Is None, 'return', or an LP model object for the solver.
+
+ element_type: 'gene' or 'reaction'
+
+ solver: 'glpk', 'gurobi', or 'cplex'.
+
+ error_reporting: None or True to disable or enable printing errors encountered
+ when trying to find the optimal solution.
+
+ discard_problems: Boolean. If True do not save problems. This will
+ help with memory issues related to gurobi.
+ .. warning:: This is deprecated.
+
+ Returns a list of dictionaries: growth_rate_dict, solution_status_dict,
+ problem_dict where the key corresponds to each element in element_list.
+
+ """
+ if solver is None:
+ solver = get_solver_name() if method == "fba" else get_solver_name(qp=True)
+ # fast versions of functions
+ if method == "fba":
+ if element_type == "gene":
+ return single_gene_deletion_fba(cobra_model, element_list,
+ solver=solver)
+ elif element_type == "reaction":
+ return single_reaction_deletion_fba(cobra_model, element_list,
+ solver=solver)
+ if element_type == 'gene':
+ the_solution = single_gene_deletion(cobra_model, element_list,
+ method=method, solver=solver)
+
+ else:
+ the_solution = single_reaction_deletion(cobra_model, element_list,
+ method=method, solver=solver)
+ return the_solution
+
+
+def single_reaction_deletion_fba(cobra_model, reaction_list=None, solver=None):
+ solver = solver_dict[get_solver_name() if solver is None else solver]
+ lp = solver.create_problem(cobra_model)
+ growth_rate_dict = {}
+ status_dict = {}
+ if reaction_list is None:
+ reaction_list = cobra_model.reactions
+ else:
+ reaction_list = [cobra_model.reactions.get_by_id(i) \
+ if isinstance(i, string_types) else i \
+ for i in reaction_list]
+ for reaction in reaction_list:
+ old_bounds = (reaction.lower_bound, reaction.upper_bound)
+ index = cobra_model.reactions.index(reaction)
+ solver.change_variable_bounds(lp, index, 0., 0.)
+ solver.solve_problem(lp)
+ status = solver.get_status(lp)
+ status_dict[reaction.id] = status
+ growth_rate_dict[reaction.id] = solver.get_objective_value(lp) if status == "optimal" else 0.
+ # reset the problem
+ solver.change_variable_bounds(lp, index, old_bounds[0], old_bounds[1])
+ return(growth_rate_dict, status_dict)
+
+def single_gene_deletion_fba(cobra_model, gene_list=None, solver=None):
+ solver = solver_dict[get_solver_name() if solver is None else solver]
+ lp = solver.create_problem(cobra_model)
+ growth_rate_dict = {}
+ status_dict = {}
+ if gene_list is None:
+ gene_list = cobra_model.genes
+ else:
+ gene_list = [cobra_model.genes.get_by_id(i) \
+ if isinstance(i, string_types) else i for i in gene_list]
+ for gene in gene_list:
+ old_bounds = {}
+ for reaction in find_gene_knockout_reactions(cobra_model, [gene]):
+ index = cobra_model.reactions.index(reaction)
+ old_bounds[index] = (reaction.lower_bound, reaction.upper_bound)
+ solver.change_variable_bounds(lp, index, 0., 0.)
+ solver.solve_problem(lp)
+ status = solver.get_status(lp)
+ status_dict[gene.id] = status
+ growth_rate_dict[gene.id] = solver.get_objective_value(lp)# if status == "optimal" else 0.
+ # reset the problem
+ for index, bounds in iteritems(old_bounds):
+ solver.change_variable_bounds(lp, index, bounds[0], bounds[1])
+ return(growth_rate_dict, status_dict)
+
+def single_reaction_deletion(cobra_model, element_list=None,
+ method='fba', the_problem='return',
+ solver=None, error_reporting=None,
+ discard_problems=True):
+ """Performs optimization simulations to realize the objective defined
+ from cobra_model.reactions[:].objective_coefficients after deleting each reaction
+ from the model.
+
+ cobra_model: a cobra.Model object
+
+ element_list: Is None or a list of cobra.Reactions in cobra_model to disable.
+ If None then disable each reaction in cobra_model.reactions and optimize for the
+ objective function defined from cobra_model.reactions[:].objective_coefficients.
+
+ method: 'fba' is the only option at the moment.
+
+ the_problem: Is None, 'reuse', or an LP model object for the solver.
+
+ solver: 'glpk', 'gurobi', or 'cplex'.
+
+ discard_problems: Boolean. If True do not save problems. This will
+ help with memory issues related to gurobi.
+
+ Returns a list of dictionaries: growth_rate_dict, solution_status_dict,
+ problem_dict where the key corresponds to each reaction in reaction_list.
+
+ """
+ if solver is None:
+ solver = get_solver_name() if method == "fba" else get_solver_name(qp=True)
+ #element_list so we can merge single_reaction_deletion and single_gene_deletion
+
+ wt_model = cobra_model.copy() #Original wild-type (wt) model.
+ wt_model.id = 'Wild-Type'
+ #MOMA constructs combined quadratic models thus we cannot reuse a model
+ #generated by the cobra_model.optimize call
+ if method.lower() == 'moma':
+ the_problem = 'return'
+ mutant_model = wt_model.copy() #Need a second model for moma
+ else:
+ mutant_model = cobra_model
+ discard_problems = False
+ if the_problem:
+ the_problem = 'return'
+ discard_problems = True
+ the_problem = wt_model.optimize(the_problem=the_problem, solver=solver,
+ error_reporting=error_reporting)
+ wt_f = wt_model.solution.f
+ wt_status = wt_model.solution.status
+ wt_x = deepcopy(wt_model.solution.x)
+ wt_x_dict = deepcopy(wt_model.solution.x_dict)
+
+ wt_problem = the_problem
+ if element_list is None:
+ element_list = mutant_model.reactions
+ elif not hasattr(element_list[0], 'id'):
+ element_list = map(mutant_model.reactions.get_by_id, element_list)
+ else:
+ if mutant_model is not cobra_model:
+ element_list = [x.id for x in element_list]
+ element_list = map(mutant_model.genes.get_by_id, element_list)
+
+ growth_rate_dict = {}
+ solution_status_dict = {}
+ problem_dict = {}
+ combined_model = None
+ for the_element in element_list:
+ #delete the gene
+ #if the deletion alters the bounds then run simulation
+ old_lower_bound, old_upper_bound = map(float, [the_element.lower_bound,
+ the_element.upper_bound])
+ mutant_model.id = the_element.id
+ if old_lower_bound != 0 or old_upper_bound != 0:
+ the_element.lower_bound = 0
+ the_element.upper_bound = 0
+ if method.lower() == 'fba':
+ the_problem = mutant_model.optimize(the_problem=wt_problem,
+ solver=solver,
+ error_reporting=error_reporting)
+ growth_rate_dict[the_element] = mutant_model.solution.f
+ solution_status_dict[the_element] = mutant_model.solution.status
+ elif method.lower() == 'moma':
+ try:
+ #TODO: Need to figure out why reusing the problem and the combined_model do not
+ #speed things up here.
+ moma_solution = moma(wt_model, mutant_model, solver=solver, the_problem=the_problem,
+ combined_model=combined_model)
+ the_problem = moma_solution.pop('the_problem')
+ growth_rate_dict[the_element] = float(moma_solution.pop('objective_value'))
+ solution_status_dict[the_element] = moma_solution.pop('status')
+ combined_model = moma_solution.pop('combined_model')
+ except:
+ growth_rate_dict[the_element] = nan
+ the_problem = None
+ solution_status_dict[the_element] = 'failed'
+
+ if discard_problems:
+ problem_dict[the_element] = 'discarded'
+ else:
+ problem_dict[the_element] = the_problem
+ if not the_problem:
+ the_problem = wt_problem
+ #reset the model
+ the_element.lower_bound = old_lower_bound
+ the_element.upper_bound = old_upper_bound
+ #else just use the wt_f and x
+ else:
+ if discard_problems:
+ problem_dict[the_element] = 'discarded'
+ else:
+ problem_dict[the_element] = wt_problem
+ growth_rate_dict[the_element] = wt_f
+ solution_status_dict[the_element] = wt_status
+
+
+ return(growth_rate_dict, solution_status_dict, problem_dict)
+
+def single_gene_deletion(cobra_model, element_list=None,
+ method='fba', the_problem='reuse', solver=None,
+ error_reporting=None):
+ """Performs optimization simulations to realize the objective defined
+ from cobra_model.reactions[:].objective_coefficients after deleting each gene in
+ gene_list from the model.
+
+ cobra_model: a cobra.Model object
+
+ element_list: Is None or a list of genes to delete. If None then
+ disable each reaction associated with each gene in cobra_model.genes.
+
+ method: 'fba' or 'moma'
+
+ the_problem: Is None or 'reuse'.
+
+ solver: 'glpk', 'gurobi', or 'cplex'.
+
+ Returns a list of dictionaries: growth_rate_dict, solution_status_dict,
+ problem_dict where the key corresponds to each reaction in reaction_list.
+
+ TODO: Add in a section that allows copying and collection of problem for
+ debugging purposes.
+
+ """
+ if solver is None:
+ solver = get_solver_name() if method == "fba" else get_solver_name(qp=True)
+ wt_model = cobra_model.copy() #Original wild-type (wt) model.
+ wt_model.id = 'Wild-Type'
+ #MOMA constructs combined quadratic models thus we cannot reuse a model
+ #generated by the cobra_model.optimize call
+ if method.lower() == 'moma':
+ the_problem = 'return'
+ mutant_model = wt_model.copy() #Need a second model for moma
+ else:
+ mutant_model = cobra_model
+ discard_problems = False
+ if the_problem:
+ the_problem = 'return'
+ discard_problems = True
+
+ solver_object = solver_dict[solver]
+ the_problem = solver_object.create_problem(wt_model)
+ solver_object.solve_problem(the_problem)
+ solution = solver_object.format_solution(the_problem, wt_model)
+ wt_f = solution.f
+ wt_status = solution.status
+ wt_x = deepcopy(solution.x)
+ wt_x_dict = deepcopy(solution.x_dict)
+
+ if element_list is None:
+ element_list = mutant_model.genes
+ elif not hasattr(element_list[0], 'id'):
+ element_list = map(mutant_model.genes.get_by_id, element_list)
+ else:
+ if mutant_model is not cobra_model:
+ element_list = [x.id for x in element_list]
+ element_list = map(mutant_model.genes.get_by_id, element_list)
+ wt_problem = the_problem
+
+ growth_rate_dict = {}
+ solution_status_dict = {}
+ problem_dict = {}
+ combined_model = None
+
+ for the_element in element_list:
+ #delete the gene
+ #if the deletion alters the bounds then run simulation
+ delete_model_genes(mutant_model, the_element)
+ mutant_model.id = the_element.id
+ if mutant_model._trimmed:
+ if method.lower() == 'fba':
+ the_problem = mutant_model.optimize(the_problem=wt_problem,
+ solver=solver,
+ error_reporting=error_reporting)
+ growth_rate_dict[the_element.id] = mutant_model.solution.f
+ solution_status_dict[the_element.id] = mutant_model.solution.status
+ elif method.lower() == 'moma':
+ try:
+ #TODO: Need to figure out why reusing the problem and the combined_model do not
+ #speed things up here.
+ moma_solution = moma(wt_model, mutant_model, solver=solver, the_problem=the_problem,
+ combined_model=combined_model)
+ the_problem = moma_solution.pop('the_problem')
+ growth_rate_dict[the_element.id] = float(moma_solution.pop('objective_value'))
+ solution_status_dict[the_element.id] = moma_solution.pop('status')
+ combined_model = moma_solution.pop('combined_model')
+ except:
+ growth_rate_dict[the_element.id] = nan
+ the_problem = None
+ solution_status_dict[the_element.id] = 'failed'
+
+ if discard_problems:
+ problem_dict[the_element.id] = 'discarded'
+ else:
+ problem_dict[the_element.id] = the_problem
+ if not the_problem:
+ the_problem = wt_problem
+ #reset the model
+ undelete_model_genes(mutant_model)
+ #else just use the wt_f and x
+ else:
+ if discard_problems:
+ problem_dict[the_element.id] = 'discarded'
+ else:
+ problem_dict[the_element.id] = wt_problem
+ growth_rate_dict[the_element.id] = wt_f
+ solution_status_dict[the_element.id] = wt_status
+
+
+ return(growth_rate_dict, solution_status_dict, problem_dict)
+
diff --git a/cobra/flux_analysis/variability.py b/cobra/flux_analysis/variability.py
new file mode 100644
index 0000000..26c7d7e
--- /dev/null
+++ b/cobra/flux_analysis/variability.py
@@ -0,0 +1,96 @@
+from warnings import warn
+
+from ..external.six import iteritems, string_types
+from ..core.Metabolite import Metabolite
+from ..solvers import solver_dict, get_solver_name
+
+
+def flux_variability_analysis(cobra_model, reaction_list=None,
+ fraction_of_optimum=1.0, solver=None,
+ objective_sense="maximize", **solver_args):
+ """Runs flux variability analysis to find max/min flux values
+
+ cobra_model : :class:`~cobra.core.Model`:
+
+ reaction_list : list of :class:`~cobra.core.Reaction`: or their id's
+ The id's for which FVA should be run. If this is None, the bounds
+ will be comptued for all reactions in the model.
+
+ fraction_of_optimum : fraction of optimum which must be maintained.
+ The original objective reaction is constrained to be greater than
+ maximal_value * fraction_of_optimum
+
+ solver : string of solver name
+ If None is given, the default solver will be used.
+
+ """
+ if reaction_list is None and "the_reactions" in solver_args:
+ reaction_list = solver_args.pop("the_reactions")
+ from warnings import warn
+ warn("the_reactions is deprecated. Please use reaction_list=")
+ if reaction_list is None:
+ reaction_list = cobra_model.reactions
+ else:
+ reaction_list = [cobra_model.reactions.get_by_id(i)
+ if isinstance(i, string_types) else i
+ for i in reaction_list]
+ solver = solver_dict[get_solver_name() if solver is None else solver]
+ lp = solver.create_problem(cobra_model)
+ solver.solve_problem(lp, objective_sense=objective_sense)
+ solution = solver.format_solution(lp, cobra_model)
+ if solution.status != "optimal":
+ raise ValueError("FVA requires the solution status to be optimal, not "
+ + solution.status)
+ # set all objective coefficients to 0
+ for i, r in enumerate(cobra_model.reactions):
+ if r.objective_coefficient != 0:
+ f = solution.x_dict[r.id]
+ new_bounds = (f * fraction_of_optimum, f)
+ solver.change_variable_bounds(lp, i,
+ min(new_bounds), max(new_bounds))
+ solver.change_variable_objective(lp, i, 0.)
+ # perform fva
+ fva_results = {}
+ for r in reaction_list:
+ i = cobra_model.reactions.index(r)
+ fva_results[r.id] = {}
+ solver.change_variable_objective(lp, i, 1.)
+ solver.solve_problem(lp, objective_sense="maximize", **solver_args)
+ fva_results[r.id]["maximum"] = solver.get_objective_value(lp)
+ solver.solve_problem(lp, objective_sense="minimize", **solver_args)
+ fva_results[r.id]["minimum"] = solver.get_objective_value(lp)
+ # revert the problem to how it was before
+ solver.change_variable_objective(lp, i, 0.)
+ return fva_results
+
+
+def find_blocked_reactions(cobra_model, reaction_list=None,
+ solver=None, zero_cutoff=1e-9,
+ open_exchanges=False, **kwargs):
+ """Finds reactions that cannot carry a flux with the current
+ exchange reaction settings for cobra_model, using flux variability
+ analysis.
+
+ """
+ from warnings import warn
+ if solver is None:
+ solver = get_solver_name()
+ blocked_reactions = []
+ if reaction_list is None and "the_reactions" in solver_args:
+ reaction_list = solver_args.pop("the_reactions")
+ warn("the_reactions is deprecated. Please use reaction_list=")
+ if open_exchanges:
+ warn('DEPRECATED: Move to using the Reaction.boundary attribute')
+ exchange_reactions = [x for x in cobra_model.reactions
+ if x.startswith('EX')]
+ for the_reaction in exchange_reactions:
+ if the_reaction.lower_bound >= 0:
+ the_reaction.lower_bound = -1000
+ if the_reaction.upper_bound >= 0:
+ the_reaction.upper_bound = 1000
+ flux_span_dict = flux_variability_analysis(
+ cobra_model, fraction_of_optimum=0., reaction_list=reaction_list,
+ solver=solver, **kwargs)
+ blocked_reactions = [k for k, v in flux_span_dict.items()
+ if max(map(abs, v.values())) < zero_cutoff]
+ return blocked_reactions
diff --git a/cobra/io/__init__.py b/cobra/io/__init__.py
new file mode 100644
index 0000000..b6c9bfc
--- /dev/null
+++ b/cobra/io/__init__.py
@@ -0,0 +1,29 @@
+from warnings import warn
+
+try:
+ import libsbml
+except ImportError:
+ libsbml = None
+try:
+ import scipy
+except ImportError:
+ scipy = None
+
+if libsbml:
+ from .sbml import create_cobra_model_from_sbml_file as read_sbml_model
+ from .sbml import read_legacy_sbml
+ from .sbml import write_cobra_model_to_sbml_file as write_sbml_model
+else:
+ warn("cobra.io.sbml requires libsbml")
+
+if scipy:
+ from .mat import load_matlab_model
+ from .mat import save_matlab_model
+else:
+ warn("cobra.io.mat requires scipy")
+
+
+from .json import load_json_model
+from .json import save_json_model, to_json
+
+del libsbml, scipy, warn
diff --git a/cobra/io/json.py b/cobra/io/json.py
new file mode 100644
index 0000000..d4fe4c4
--- /dev/null
+++ b/cobra/io/json.py
@@ -0,0 +1,169 @@
+from __future__ import absolute_import
+
+import json
+from warnings import warn
+
+from .. import Model, Metabolite, Reaction, Formula
+from ..external.six import iteritems, string_types
+
+# Detect numpy types to replace them.
+try:
+ from numpy import float_, bool_
+except ImportError:
+ class float_:
+ pass
+
+ class bool_:
+ pass
+
+_DEFAULT_REACTION_ATTRIBUTES = {
+ 'id', 'name', 'subsystem', 'lower_bound', 'upper_bound',
+ 'objective_coefficient', 'notes', 'gene_reaction_rule', 'variable_kind'}
+
+_DEFAULT_METABOLITE_ATTRIBUTES = {
+ 'id', 'annotation', 'charge', 'compartment', 'formula', 'name', 'notes',
+ '_bound', '_constraint_sense'}
+
+_DEFAULT_GENE_ATTRIBUTES = {
+ 'id', 'name'}
+
+
+def _fix_type(value):
+ """convert possible types to str, float, and bool"""
+ # Because numpy floats can not be pickled to json
+ if isinstance(value, string_types):
+ return str(value)
+ if isinstance(value, float_):
+ return float(value)
+ if isinstance(value, bool_):
+ return bool(value)
+ if isinstance(value, Formula):
+ return str(value)
+ return value
+
+
+def _from_dict(obj):
+ """build a model from a dict"""
+ if 'reactions' not in obj:
+ raise Exception('JSON object has no reactions attribute. Cannot load.')
+ model = Model()
+ # add metabolites
+ new_metabolites = []
+ for metabolite in obj['metabolites']:
+ new_metabolite = Metabolite()
+ for k, v in iteritems(metabolite):
+ setattr(new_metabolite, k, v)
+ new_metabolite.formula = Formula(new_metabolite.formula)
+ new_metabolites.append(new_metabolite)
+ model.add_metabolites(new_metabolites)
+ # add reactions
+ new_reactions = []
+ for reaction in obj['reactions']:
+ new_reaction = Reaction()
+ for k, v in iteritems(reaction):
+ if k == 'reversibility' or k == "reaction":
+ continue
+ elif k == 'metabolites':
+ new_reaction.add_metabolites(
+ {model.metabolites.get_by_id(str(met)): coeff
+ for met, coeff in iteritems(v)})
+ else:
+ setattr(new_reaction, k, _fix_type(v))
+ new_reactions.append(new_reaction)
+ model.add_reactions(new_reactions)
+ # add gene attributes
+ for gene in obj['genes']:
+ if gene['id'] in model.genes:
+ new_gene = model.genes.get_by_id(gene['id'])
+ for k, v in iteritems(gene):
+ # don't set the id
+ if k == 'id':
+ continue
+ setattr(new_gene, k, _fix_type(v))
+ for k, v in iteritems(obj):
+ if k in ['id', 'description', 'notes']:
+ setattr(model, k, v)
+ return model
+
+
+def _to_dict(model):
+ """convert the model to a dict"""
+ reaction_attributes = _DEFAULT_REACTION_ATTRIBUTES
+ metabolite_attributes = _DEFAULT_METABOLITE_ATTRIBUTES
+ gene_attributes = _DEFAULT_GENE_ATTRIBUTES
+ new_reactions = []
+ new_metabolites = []
+ new_genes = []
+ for reaction in model.reactions:
+ new_reaction = {key: _fix_type(getattr(reaction, key))
+ for key in reaction_attributes}
+ # set metabolites
+ mets = {str(met): coeff for met, coeff
+ in iteritems(reaction._metabolites)}
+ new_reaction['metabolites'] = mets
+ new_reactions.append(new_reaction)
+ for metabolite in model.metabolites:
+ new_metabolite = {key: _fix_type(getattr(metabolite, key))
+ for key in metabolite_attributes}
+ new_metabolites.append(new_metabolite)
+ for gene in model.genes:
+ new_gene = {key: str(getattr(gene, key))
+ for key in gene_attributes}
+ new_genes.append(new_gene)
+ obj = {'reactions': new_reactions,
+ 'metabolites': new_metabolites,
+ 'genes': new_genes,
+ 'id': model.id,
+ 'description': model.description,
+ 'notes': model.notes}
+ return obj
+
+
+def to_json(model):
+ """Save the cobra model as a json string"""
+ return json.dumps(_to_dict(model), allow_nan=False)
+
+
+def from_json(jsons):
+ """Load cobra model from a json string"""
+ return _from_dict(json.loads(jsons))
+
+
+def load_json_model(file_name):
+ """Load a cobra model stored as a json file
+
+ file_name : str or file-like object
+
+ """
+ # open the file
+ should_close = False
+ if isinstance(file_name, string_types):
+ file_name = open(file_name, 'r')
+ should_close = True
+
+ model = _from_dict(json.load(file_name))
+
+ if should_close:
+ file_name.close()
+
+ return model
+
+
+def save_json_model(model, file_name):
+ """Save the cobra model as a json file.
+
+ model : :class:`~cobra.core.Model.Model` object
+
+ file_name : str or file-like object
+
+ """
+ # open the file
+ should_close = False
+ if isinstance(file_name, string_types):
+ file_name = open(file_name, 'w')
+ should_close = True
+
+ json.dump(_to_dict(model), file_name, allow_nan=False)
+
+ if should_close:
+ file_name.close()
diff --git a/cobra/io/mat.py b/cobra/io/mat.py
new file mode 100644
index 0000000..7f29237
--- /dev/null
+++ b/cobra/io/mat.py
@@ -0,0 +1,181 @@
+import re
+
+from numpy import array, object as np_object
+from scipy.io import loadmat, savemat
+from scipy.sparse import coo_matrix
+
+from .. import Model, Metabolite, Reaction, Formula
+
+# try to use an ordered dict
+try:
+ from scipy.version import short_version
+ scipy_version = int(short_version.split(".")[1])
+ # if scipy version is earlier than 0.11, OrderedDict will not work, so use
+ # a dict instead
+ if scipy_version < 11:
+ dicttype = dict
+ else:
+ from collections import OrderedDict as dicttype
+ del short_version, scipy_version
+except ImportError:
+ dicttype = dict
+
+
+# precompiled regular expressions
+_bracket_re = re.compile("r\[[a-z]\]$")
+_underscore_re = re.compile(r"_[a-z]$")
+
+
+def _get_id_comparment(id):
+ """extract the compartment from the id string"""
+ bracket_search = _bracket_re.findall(id)
+ if len(bracket_search) == 1:
+ return bracket_search[0][1]
+ underscore_search = _underscore_re.findall(id)
+ if len(underscore_search) == 1:
+ return underscore_search[0][1]
+ return None
+
+
+def _cell(x):
+ """translate an array x into a MATLAB cell array"""
+ return array(x, dtype=np_object)
+
+
+def load_matlab_model(infile_path, variable_name=None):
+ """Load a cobra model stored as a .mat file
+
+ infile_path : str
+
+ variable_name : str, optional
+ The variable name of the model in the .mat file. If this is not
+ specified, then the first MATLAB variable which looks like a COBRA
+ model will be used
+
+ """
+ data = loadmat(infile_path)
+ if variable_name is not None:
+ return from_mat_struct(data[variable_name], model_id=variable_name)
+ else:
+ # will try all of the variables in the dict
+ possible_names = {}
+ for key in data.keys():
+ possible_names[key] = None
+ # skip meta variables
+ to_remove = ["__globals__", "__header__", "__version__"]
+ to_pop = []
+ for name in possible_names:
+ if name in to_remove:
+ to_pop.append(name)
+ for i in to_pop:
+ possible_names.pop(i)
+ possible_names = possible_names.keys()
+ for possible_name in possible_names:
+ try:
+ return from_mat_struct(data[possible_name], model_id=possible_name)
+ except ValueError:
+ None
+ # If code here is executed, then no model was found.
+ raise Exception("no COBRA model found")
+
+
+def save_matlab_model(model, file_name):
+ """Save the cobra model as a .mat file.
+
+ This .mat file can be used directly in the MATLAB version of COBRA.
+
+ model : :class:`~cobra.core.Model.Model` object
+
+ file_name : str or file-like object
+
+ """
+ mat = create_mat_dict(model)
+ savemat(file_name, {str(model.description): mat},
+ appendmat=True, oned_as="column")
+
+
+def create_mat_dict(model):
+ """create a dict mapping model attributes to arrays"""
+ model = model.to_array_based_model()
+ rxns = model.reactions
+ mets = model.metabolites
+ mat = dicttype()
+ mat["mets"] = _cell(mets.list_attr("id"))
+ mat["metNames"] = _cell(mets.list_attr("name"))
+ mat["metFormulas"] = _cell([str(m.formula) for m in mets])
+ mat["genes"] = _cell(model.genes.list_attr("id"))
+ mat["grRules"] = _cell(rxns.list_attr("gene_reaction_rule"))
+ mat["rxns"] = _cell(rxns.list_attr("id"))
+ mat["rxnNames"] = _cell(rxns.list_attr("name"))
+ mat["subSystems"] = _cell(rxns.list_attr("subsystem"))
+ mat["csense"] = "".join(model._constraint_sense)
+ mat["S"] = model.S
+ # multiply by 1 to convert to float, working around scipy bug
+ # https://github.com/scipy/scipy/issues/4537
+ mat["lb"] = array(rxns.list_attr("lower_bound")) * 1.
+ mat["ub"] = array(rxns.list_attr("upper_bound")) * 1.
+ mat["b"] = array(mets.list_attr("_bound")) * 1.
+ mat["c"] = array(rxns.list_attr("objective_coefficient")) * 1.
+ mat["rev"] = array(rxns.list_attr("reversibility"))
+ mat["description"] = str(model.description)
+ return mat
+
+
+def from_mat_struct(mat_struct, model_id=None):
+ """create a model from the COBRA toolbox struct
+
+ The struct will be a dict read in by scipy.io.loadmat
+
+ """
+ m = mat_struct
+ if m.dtype.names is None:
+ raise ValueError("not a valid mat struct")
+ if not set(["rxns", "mets", "S", "lb", "ub"]) <= set(m.dtype.names):
+ raise ValueError("not a valid mat struct")
+ model = Model()
+ if "description" in m:
+ model.id = m["description"][0, 0][0]
+ elif model_id is not None:
+ model.id = model_id
+ else:
+ model.id = "imported_model"
+ model.description = model.id
+ for i, name in enumerate(m["mets"][0, 0]):
+ new_metabolite = Metabolite()
+ new_metabolite.id = str(name[0][0])
+ new_metabolite.compartment = _get_id_comparment(new_metabolite.id)
+ try:
+ new_metabolite.name = str(m["metNames"][0, 0][i][0][0])
+ except (IndexError, ValueError):
+ pass
+ try:
+ new_metabolite.formula = \
+ Formula(str(m["metFormulas"][0][0][i][0][0]))
+ except (IndexError, ValueError):
+ pass
+ model.add_metabolites([new_metabolite])
+ new_reactions = []
+ for i, name in enumerate(m["rxns"][0, 0]):
+ new_reaction = Reaction()
+ new_reaction.id = str(name[0][0])
+ new_reaction.lower_bound = float(m["lb"][0, 0][i][0])
+ new_reaction.upper_bound = float(m["ub"][0, 0][i][0])
+ new_reaction.objective_coefficient = float(m["c"][0, 0][i][0])
+ try:
+ new_reaction.gene_reaction_rule = str(m['grRules'][0, 0][i][0][0])
+ except (IndexError, ValueError):
+ pass
+ try:
+ new_reaction.name = str(m["rxnNames"][0, 0][i][0][0])
+ except (IndexError, ValueError):
+ pass
+ try:
+ new_reaction.subsystem = str(m['subSystems'][0, 0][i][0][0])
+ except (IndexError, ValueError):
+ pass
+ new_reactions.append(new_reaction)
+ model.add_reactions(new_reactions)
+ coo = coo_matrix(m["S"][0, 0])
+ for i, j, v in zip(coo.row, coo.col, coo.data):
+ model.reactions[j].add_metabolites({model.metabolites[i]: v})
+ return model
diff --git a/cobra/io/sbml.py b/cobra/io/sbml.py
new file mode 100644
index 0000000..821931b
--- /dev/null
+++ b/cobra/io/sbml.py
@@ -0,0 +1,613 @@
+#cobra/sbml.py: Tools for reading / writing SBML now contained in
+#this module
+#System modules
+from .. import Model, Reaction, Metabolite, Formula
+from os.path import isfile
+from os import name as __name
+from warnings import warn
+import re
+from math import isnan, isinf
+
+#
+if __name == 'java':
+ from org.sbml.jsbml import SBMLDocument, SpeciesReference, KineticLaw, Parameter
+ from org.sbml.jsbml import SBMLReader, SBMLWriter
+ __tmp_reader = SBMLReader()
+ __tmp_writer = SBMLWriter()
+ readSBML = __tmp_reader.readSBMLFromFile
+ writeSBML = __tmp_writer.writeSBMLToFile
+ from org.sbml.jsbml.Unit import Kind as __Kind
+ UNIT_KIND_MOLE = __Kind.MOLE
+ UNIT_KIND_GRAM = __Kind.GRAM
+ UNIT_KIND_SECOND = __Kind.SECOND
+ UNIT_KIND_DIMENSIONLESS = __Kind.DIMENSIONLESS
+else:
+ from libsbml import SBMLDocument, SpeciesReference, KineticLaw, Parameter
+ from libsbml import readSBML, writeSBML
+ from libsbml import UNIT_KIND_MOLE, UNIT_KIND_GRAM, UNIT_KIND_SECOND, UNIT_KIND_DIMENSIONLESS
+def parse_legacy_id(the_id, the_compartment=None, the_type='metabolite',
+ use_hyphens=False):
+ """Deals with a bunch of problems due to bigg.ucsd.edu not following SBML standards
+
+ the_id: String.
+
+ the_compartment: String.
+
+ the_type: String. Currently only 'metabolite' is supported
+
+ use_hyphens: Boolean. If True, double underscores (__) in an SBML ID will be converted to hyphens
+
+ """
+ if use_hyphens:
+ the_id = the_id.replace('__','-')
+ if the_type == 'metabolite':
+ if the_id.split('_')[-1] == the_compartment:
+ #Reformat Ids to match convention in Palsson Lab.
+ the_id = the_id[:-len(the_compartment)-1]
+ the_id += '[%s]'%the_compartment
+ return the_id
+def create_cobra_model_from_sbml_file(sbml_filename, old_sbml=False, legacy_metabolite=False,
+ print_time=False, use_hyphens=False):
+ """convert an SBML XML file into a cobra.Model object. Supports
+ SBML Level 2 Versions 1 and 4. The function will detect if the SBML fbc package is used in the file
+ and run the converter if the fbc package is used.
+
+ sbml_filename: String.
+
+ old_sbml: Boolean. Set to True if the XML file has metabolite
+ formula appended to metabolite names. This was a poorly designed
+ artifact that persists in some models.
+
+ legacy_metabolite: Boolean. If True then assume that the metabolite id has
+ the compartment id appended after an underscore (e.g. _c for cytosol). This
+ has not been implemented but will be soon.
+
+ print_time: deprecated
+
+ use_hyphens: Boolean. If True, double underscores (__) in an SBML ID will be converted to hyphens
+
+ """
+ __default_lower_bound = -1000
+ __default_upper_bound = 1000
+ __default_objective_coefficient = 0
+ # Ensure that the file exists
+ if not isfile(sbml_filename):
+ raise IOError('Your SBML file is not found: %s'%sbml_filename)
+ #Expressions to change SBML Ids to Palsson Lab Ids
+ metabolite_re = re.compile('^M_')
+ reaction_re = re.compile('^R_')
+ compartment_re = re.compile('^C_')
+ if print_time:
+ warn("print_time is deprecated")
+ model_doc = readSBML(sbml_filename)
+ if (model_doc.getPlugin("fbc") != None):
+ from libsbml import ConversionProperties, LIBSBML_OPERATION_SUCCESS
+ conversion_properties = ConversionProperties()
+ conversion_properties.addOption("convert fbc to cobra", True, "Convert FBC model to Cobra model")
+ result = model_doc.convert(conversion_properties)
+ if result != LIBSBML_OPERATION_SUCCESS:
+ raise(Exception("Conversion of SBML+fbc to COBRA failed"))
+ sbml_model = model_doc.getModel()
+ sbml_model_id = sbml_model.getId()
+ sbml_species = sbml_model.getListOfSpecies()
+ sbml_reactions = sbml_model.getListOfReactions()
+ sbml_compartments = sbml_model.getListOfCompartments()
+ compartment_dict = dict([(compartment_re.split(x.getId())[-1], x.getName())
+ for x in sbml_compartments])
+ if legacy_metabolite:
+ #Deal with the palsson lab appending the compartment id to the metabolite id
+ new_dict = {}
+ for the_id, the_name in compartment_dict.items():
+ if the_name == '':
+ new_dict[the_id[0].lower()] = the_id
+ else:
+ new_dict[the_id] = the_name
+ compartment_dict = new_dict
+ legacy_compartment_converter = dict([(v,k)
+ for k, v in compartment_dict.items()])
+
+ cobra_model = Model(sbml_model_id)
+ metabolites = []
+ metabolite_dict = {}
+ #Convert sbml_metabolites to cobra.Metabolites
+ for sbml_metabolite in sbml_species:
+ #Skip sbml boundary species
+ if sbml_metabolite.getBoundaryCondition():
+ continue
+
+ if (old_sbml or legacy_metabolite) and \
+ sbml_metabolite.getId().endswith('_b'):
+ #Deal with incorrect sbml from bigg.ucsd.edu
+ continue
+ tmp_metabolite = Metabolite()
+ metabolite_id = tmp_metabolite.id = sbml_metabolite.getId()
+ tmp_metabolite.compartment = compartment_re.split(sbml_metabolite.getCompartment())[-1]
+ if legacy_metabolite:
+ if tmp_metabolite.compartment not in compartment_dict:
+ tmp_metabolite.compartment = legacy_compartment_converter[tmp_metabolite.compartment]
+ tmp_metabolite.id = parse_legacy_id(tmp_metabolite.id, tmp_metabolite.compartment,
+ use_hyphens=use_hyphens)
+ if use_hyphens:
+ tmp_metabolite.id = metabolite_re.split(tmp_metabolite.id)[-1].replace('__','-')
+ else:
+ #Just in case the SBML ids are ill-formed and use -
+ tmp_metabolite.id = metabolite_re.split(tmp_metabolite.id)[-1].replace('-','__')
+ tmp_metabolite.name = sbml_metabolite.getName()
+ tmp_formula = ''
+ tmp_metabolite.notes = parse_legacy_sbml_notes(sbml_metabolite.getNotesString())
+ tmp_metabolite.charge = sbml_metabolite.getCharge()
+ if "CHARGE" in tmp_metabolite.notes:
+ note_charge = tmp_metabolite.notes["CHARGE"][0]
+ try:
+ note_charge = float(note_charge)
+ if note_charge == int(note_charge):
+ note_charge = int(note_charge)
+ except:
+ warn("charge of %s is not a number (%s)" % (tmp_metabolite.id, str(note_charge)))
+ else:
+ if tmp_metabolite.charge == 0 or tmp_metabolite.charge == note_charge: # get_charge() when unspecified is 0
+ tmp_metabolite.charge = note_charge
+ tmp_metabolite.notes.pop("CHARGE")
+ else: # tmp_metabolite.charge != note_charge
+ msg = "different charges specified for %s (%d and %d)"
+ msg = msg % (tmp_metabolite.id, tmp_metabolite.charge, note_charge)
+ warn(msg)
+
+ for the_key in tmp_metabolite.notes.keys():
+ if the_key.lower() == 'formula':
+ tmp_formula = tmp_metabolite.notes.pop(the_key)[0]
+ break
+ if tmp_formula == '' and old_sbml:
+ tmp_formula = tmp_metabolite.name.split('_')[-1]
+ tmp_metabolite.name = tmp_metabolite.name[:-len(tmp_formula)-1]
+ tmp_metabolite.formula = Formula(tmp_formula)
+ metabolite_dict.update({metabolite_id: tmp_metabolite})
+ metabolites.append(tmp_metabolite)
+ cobra_model.add_metabolites(metabolites)
+
+ #Construct the vectors and matrices for holding connectivity and numerical info
+ #to feed to the cobra toolbox.
+ #Always assume steady state simulations so b is set to 0
+ cobra_reaction_list = []
+ for sbml_reaction in sbml_reactions:
+ if use_hyphens:
+ #Change the ids to match conventions used by the Palsson lab.
+ reaction = Reaction(reaction_re.split(sbml_reaction.getId())[-1].replace('__','-'))
+ else:
+ #Just in case the SBML ids are ill-formed and use -
+ reaction = Reaction(reaction_re.split(sbml_reaction.getId())[-1].replace('-','__'))
+ cobra_reaction_list.append(reaction)
+ #reaction.exchange_reaction = 0
+ reaction.name = sbml_reaction.getName()
+ cobra_metabolites = {}
+ #Use the cobra.Metabolite class here
+ for sbml_metabolite in sbml_reaction.getListOfReactants():
+ tmp_metabolite_id = sbml_metabolite.getSpecies()
+ #This deals with boundary metabolites
+ if tmp_metabolite_id in metabolite_dict:
+ tmp_metabolite = metabolite_dict[tmp_metabolite_id]
+ cobra_metabolites[tmp_metabolite] = -sbml_metabolite.getStoichiometry()
+ for sbml_metabolite in sbml_reaction.getListOfProducts():
+ tmp_metabolite_id = sbml_metabolite.getSpecies()
+ #This deals with boundary metabolites
+ if tmp_metabolite_id in metabolite_dict:
+ tmp_metabolite = metabolite_dict[tmp_metabolite_id]
+ # Handle the case where the metabolite was specified both
+ # as a reactant and as a product.
+ if tmp_metabolite in cobra_metabolites:
+ warn("%s appears as a reactant and product %s" %
+ (tmp_metabolite_id, reaction.id))
+ cobra_metabolites[tmp_metabolite] += sbml_metabolite.getStoichiometry()
+ # if the combined stoichiometry is 0, remove the metabolite
+ if cobra_metabolites[tmp_metabolite] == 0:
+ cobra_metabolites.pop(tmp_metabolite)
+ else:
+ cobra_metabolites[tmp_metabolite] = sbml_metabolite.getStoichiometry()
+ reaction.add_metabolites(cobra_metabolites)
+ #Parse the kinetic law info here.
+ parameter_dict = {}
+ #If lower and upper bounds are specified in the Kinetic Law then
+ #they override the sbml reversible attribute. If they are not
+ #specified then the bounds are determined by getReversible.
+ if not sbml_reaction.getKineticLaw():
+
+ if sbml_reaction.getReversible():
+ parameter_dict['lower_bound'] = __default_lower_bound
+ parameter_dict['upper_bound'] = __default_upper_bound
+ else:
+ #Assume that irreversible reactions only proceed from left to right.
+ parameter_dict['lower_bound'] = 0
+ parameter_dict['upper_bound'] = __default_upper_bound
+
+ parameter_dict['objective_coefficient'] = __default_objective_coefficient
+ else:
+ for sbml_parameter in sbml_reaction.getKineticLaw().getListOfParameters():
+ parameter_dict[sbml_parameter.getId().lower()] = sbml_parameter.getValue()
+
+ if 'lower_bound' in parameter_dict:
+ reaction.lower_bound = parameter_dict['lower_bound']
+ elif 'lower bound' in parameter_dict:
+ reaction.lower_bound = parameter_dict['lower bound']
+ elif sbml_reaction.getReversible():
+ reaction.lower_bound = __default_lower_bound
+ else:
+ reaction.lower_bound = 0
+
+ if 'upper_bound' in parameter_dict:
+ reaction.upper_bound = parameter_dict['upper_bound']
+ elif 'upper bound' in parameter_dict:
+ reaction.upper_bound = parameter_dict['upper bound']
+ else:
+ reaction.upper_bound = __default_upper_bound
+
+ if 'objective_coefficient' in parameter_dict:
+ reaction.objective_coefficient = parameter_dict['objective_coefficient']
+ elif 'objective coefficient' in parameter_dict:
+ reaction.objective_coefficient = parameter_dict['objective coefficient']
+ else:
+ reaction.objective_coefficient = __default_objective_coefficient
+
+ # ensure values are not set to nan or inf
+ if isnan(reaction.lower_bound) or isinf(reaction.lower_bound):
+ reaction.lower_bound = __default_lower_bound
+ if isnan(reaction.upper_bound) or isinf(reaction.upper_bound):
+ reaction.upper_bound = __default_upper_bound
+
+ reaction_note_dict = parse_legacy_sbml_notes(sbml_reaction.getNotesString())
+ #Parse the reaction notes.
+ #POTENTIAL BUG: DEALING WITH LEGACY 'SBML' THAT IS NOT IN A
+ #STANDARD FORMAT
+ #TODO: READ IN OTHER NOTES AND GIVE THEM A reaction_ prefix.
+ #TODO: Make sure genes get added as objects
+ if 'GENE ASSOCIATION' in reaction_note_dict:
+ try:
+ rule = reaction_note_dict['GENE ASSOCIATION'][0].encode('ascii')
+ if rule.startswith(""") and rule.endswith("""):
+ rule = rule[6:-6]
+ reaction.gene_reaction_rule = str(rule)
+ except:
+ warn("gene_reaction_rule is not ascii compliant")
+ if 'GENE LIST' in reaction_note_dict:
+ reaction.systematic_names = reaction_note_dict['GENE LIST'][0]
+ elif 'GENES' in reaction_note_dict and \
+ reaction_note_dict['GENES'] != ['']:
+ reaction.systematic_names = reaction_note_dict['GENES'][0]
+ elif 'LOCUS' in reaction_note_dict:
+ gene_id_to_object = dict([(x.id, x) for x in reaction._genes])
+ for the_row in reaction_note_dict['LOCUS']:
+ tmp_row_dict = {}
+ the_row = 'LOCUS:' + the_row.lstrip('_').rstrip('#')
+ for the_item in the_row.split('#'):
+ k, v = the_item.split(':')
+ tmp_row_dict[k] = v
+ tmp_locus_id = tmp_row_dict['LOCUS']
+ if 'TRANSCRIPT' in tmp_row_dict:
+ tmp_locus_id = tmp_locus_id + '.' + tmp_row_dict['TRANSCRIPT']
+
+ if 'ABBREVIATION' in tmp_row_dict:
+ gene_id_to_object[tmp_locus_id].name = tmp_row_dict['ABBREVIATION']
+
+ if 'SUBSYSTEM' in reaction_note_dict:
+ reaction.subsystem = reaction_note_dict['SUBSYSTEM'][0]
+
+
+
+ #Now, add all of the reactions to the model.
+ cobra_model.description = sbml_model.getId()
+ #Populate the compartment list - This will be done based on cobra.Metabolites
+ #in cobra.Reactions in the future.
+ cobra_model.compartments = compartment_dict
+
+ cobra_model.add_reactions(cobra_reaction_list)
+ #cobra_model.update_rules()
+ return cobra_model
+
+
+def parse_legacy_sbml_notes(note_string, note_delimiter = ':'):
+ """Deal with legacy SBML format issues arising from the
+ COBRA Toolbox for MATLAB and BiGG.ucsd.edu developers.
+
+ """
+ note_dict = {}
+ start_tag = '<p>'
+ end_tag = '</p>'
+ if '<html:p>' in note_string:
+ start_tag = '<html:p>'
+ end_tag = '</html:p>'
+ while start_tag in note_string and end_tag in note_string:
+ note_start = note_string.index(start_tag)
+ note_end = note_string.index(end_tag)
+ the_note = note_string[(note_start + len(start_tag)):note_end].lstrip(' ').rstrip(' ')
+ if note_delimiter in the_note:
+ note_delimiter_index = the_note.index(note_delimiter)
+ note_field = the_note[:note_delimiter_index].lstrip(' ').rstrip(' ').replace('_',' ').upper()
+ note_value = the_note[(note_delimiter_index+1):].lstrip(' ').rstrip(' ')
+ if note_field in note_dict:
+ note_dict[note_field ].append(note_value)
+ else:
+ note_dict[note_field] = [note_value]
+ note_string = note_string[(note_end+len(end_tag)): ]
+
+ if 'CHARGE' in note_dict and note_dict['CHARGE'][0].lower() in ['none', 'na', 'nan']:
+ note_dict.pop('CHARGE') #Remove non-numeric charges
+
+ return(note_dict)
+
+
+def write_cobra_model_to_sbml_file(cobra_model, sbml_filename,
+ sbml_level=2, sbml_version=1,
+ print_time=False,
+ use_fbc_package=True):
+ """Write a cobra.Model object to an SBML XML file.
+
+ cobra_model: :class:`~cobra.core.Model.Model` object
+
+ sbml_filename: The file to write the SBML XML to.
+
+ sbml_level: 2 is the only level supported at the moment.
+
+ sbml_version: 1 is the only version supported at the moment.
+
+ use_fbc_package: Boolean.
+ Convert the model to the FBC package format to improve portability.
+ http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Flux_Balance_Constraints_(flux)
+
+
+ TODO: Update the NOTES to match the SBML standard and provide support for
+ Level 2 Version 4
+
+ """
+ note_start_tag, note_end_tag = '<p>', '</p>'
+ if sbml_level > 2 or (sbml_level == 2 and sbml_version == 4):
+ note_start_tag, note_end_tag = '<html:p>', '</html:p>'
+
+
+ sbml_doc = SBMLDocument(sbml_level, sbml_version)
+ sbml_model = sbml_doc.createModel(cobra_model.description.split('.')[0])
+ #Note need to set units
+ reaction_units = 'mmol_per_gDW_per_hr'
+ model_units = sbml_model.createUnitDefinition()
+ model_units.setId(reaction_units)
+ sbml_unit = model_units.createUnit()
+ sbml_unit.setKind(UNIT_KIND_MOLE)
+ sbml_unit.setScale(-3)
+ sbml_unit = model_units.createUnit()
+ sbml_unit.setKind(UNIT_KIND_GRAM)
+ sbml_unit.setExponent(-1)
+ sbml_unit = model_units.createUnit()
+ sbml_unit.setKind(UNIT_KIND_SECOND)
+ sbml_unit.setMultiplier(1.0/60/60)
+ sbml_unit.setExponent(-1)
+
+ #Add in the common compartment abbreviations. If there are additional compartments
+ #they also need to be added.
+ if not cobra_model.compartments:
+ cobra_model.compartments = {'c': 'cytosol',
+ 'p': 'periplasm',
+ 'e': 'extracellular'}
+ for the_key in cobra_model.compartments.keys():
+ sbml_comp = sbml_model.createCompartment()
+ sbml_comp.setId(the_key)
+ sbml_comp.setName(cobra_model.compartments[the_key])
+ sbml_comp.setSize(1) #Just to get rid of warnings
+
+ if print_time:
+ warn("print_time is deprecated")
+ #Use this dict to allow for fast look up of species id
+ #for references created in the reaction section.
+ metabolite_dict = {}
+
+ for cobra_metabolite in cobra_model.metabolites:
+ metabolite_dict[cobra_metabolite.id] = add_sbml_species(sbml_model,
+ cobra_metabolite,
+ note_start_tag=note_start_tag,
+ note_end_tag=note_end_tag)
+
+ for the_reaction in cobra_model.reactions:
+ #This is probably the culprit. Including cobra.Reaction
+ #objects explicitly in cobra.Model will speed this up.
+ sbml_reaction = sbml_model.createReaction()
+ #Need to remove - for proper SBML. Replace with __
+ the_reaction_id = 'R_' + the_reaction.id.replace('-','__' )
+ sbml_reaction.setId(the_reaction_id)
+ sbml_reaction.setReversible(the_reaction.reversibility)
+ if the_reaction.name:
+ sbml_reaction.setName(the_reaction.name)
+ else:
+ sbml_reaction.setName(the_reaction.id)
+ #Add in the reactant/product references
+ for the_metabolite, the_coefficient in the_reaction._metabolites.items():
+ sbml_stoichiometry = the_coefficient
+ metabolite_id = str(metabolite_dict[the_metabolite.id])
+ #Each SpeciesReference must have a unique id
+ if sbml_stoichiometry < 0:
+ species_reference = sbml_reaction.createReactant()
+ else:
+ species_reference = sbml_reaction.createProduct()
+ species_reference.setId(metabolite_id + '_' + the_reaction_id)
+ species_reference.setSpecies(metabolite_id)
+ species_reference.setStoichiometry(abs(sbml_stoichiometry))
+ #Deal with the case where the reaction is a boundary reaction
+ if len(the_reaction._metabolites) == 1:
+ the_metabolite, the_coefficient = list(the_reaction._metabolites.items())[0]
+ metabolite_id = add_sbml_species(sbml_model, the_metabolite,
+ note_start_tag=note_start_tag,
+ note_end_tag=note_end_tag,
+ boundary_metabolite=True)
+ sbml_stoichiometry = -the_coefficient
+ #Each SpeciesReference must have a unique id
+ if sbml_stoichiometry < 0:
+ species_reference = sbml_reaction.createReactant()
+ else:
+ species_reference = sbml_reaction.createProduct()
+ species_reference.setId(metabolite_id + '_' + the_reaction_id)
+ species_reference.setSpecies(metabolite_id)
+ species_reference.setStoichiometry(abs(sbml_stoichiometry))
+
+ #Add in the kineticLaw
+ sbml_law = KineticLaw(sbml_level, sbml_version)
+ if hasattr(sbml_law, 'setId'):
+ sbml_law.setId('FLUX_VALUE')
+ sbml_law.setFormula('FLUX_VALUE')
+ reaction_parameter_dict = {'LOWER_BOUND': [the_reaction.lower_bound, reaction_units],
+ 'UPPER_BOUND': [the_reaction.upper_bound, reaction_units],
+ 'FLUX_VALUE': [0, reaction_units],
+ 'OBJECTIVE_COEFFICIENT': [the_reaction.objective_coefficient,
+ 'dimensionless']}
+ for k, v in reaction_parameter_dict.items():
+ sbml_parameter = Parameter(sbml_level, sbml_version)
+ sbml_parameter.setId(k)
+ if hasattr(v, '__iter__'):
+ sbml_parameter.setValue(v[0])
+ sbml_parameter.setUnits(v[1])
+ else:
+ sbml_parameter.setValue(v)
+ sbml_law.addParameter(sbml_parameter)
+ sbml_reaction.setKineticLaw(sbml_law)
+ sbml_reaction.setNotes('<html xmlns="http://www.w3.org/1999/xhtml">%sGENE_ASSOCIATION: %s%s%sSUBSYSTEM: %s%s</html>'%(note_start_tag,
+ the_reaction.gene_reaction_rule,
+ note_end_tag,
+ note_start_tag,
+ the_reaction.subsystem,
+ note_end_tag))
+
+
+ if use_fbc_package:
+ try:
+ from libsbml import ConversionProperties, LIBSBML_OPERATION_SUCCESS
+ conversion_properties = ConversionProperties()
+ conversion_properties.addOption("convert cobra", True, "Convert Cobra model")
+ result = sbml_doc.convert(conversion_properties)
+ if result != LIBSBML_OPERATION_SUCCESS:
+ raise Exception("Conversion of COBRA to SBML+fbc failed")
+ except Exception as e:
+ error_string = 'Error saving as SBML+fbc. %s'
+ try:
+ #Check whether the FbcExtension is there
+ from libsbml import FbcExtension
+ error_string = error_string%e
+ except ImportError:
+ error_string = error_string%'FbcExtension not available in libsbml. ' +\
+ 'If use_fbc_package == True then libsbml must be compiled with ' +\
+ 'the fbc extension. '
+ from libsbml import getLibSBMLDottedVersion
+ _sbml_version = getLibSBMLDottedVersion()
+ _major, _minor, _patch = map(int, _sbml_version.split('.'))
+ if _major < 5 or (_major == 5 and _minor < 8):
+ error_string += "You've got libsbml %s installed. You need 5.8.0 or later with the fbc package"
+
+ raise(Exception(error_string))
+ writeSBML(sbml_doc, sbml_filename)
+
+def add_sbml_species(sbml_model, cobra_metabolite, note_start_tag,
+ note_end_tag, boundary_metabolite=False):
+ """A helper function for adding cobra metabolites to an sbml model.
+
+ sbml_model: sbml_model object
+
+ cobra_metabolite: a cobra.Metabolite object
+
+ note_start_tag: the start tag for parsing cobra notes. this will eventually
+ be supplanted when COBRA is worked into sbml.
+
+ note_end_tag: the end tag for parsing cobra notes. this will eventually
+ be supplanted when COBRA is worked into sbml.
+
+ """
+ sbml_species = sbml_model.createSpecies()
+ the_id = 'M_' + cobra_metabolite.id.replace('-', '__')
+ #Deal with legacy naming issues
+ the_compartment = cobra_metabolite.compartment
+ if the_id.endswith('[%s]'%the_compartment):
+ the_id = the_id[:-len('[%s]'%the_compartment)]
+ elif not the_id.endswith('_%s'%the_compartment):
+ the_id += '_%s'%the_compartment
+ if boundary_metabolite:
+ the_id += '_boundary'
+ sbml_species.setId(the_id)
+ metabolite_id = the_id
+ if boundary_metabolite:
+ sbml_species.setBoundaryCondition(True)
+ if cobra_metabolite.name:
+ sbml_species.setName(cobra_metabolite.name)
+ else:
+ sbml_species.setName(cobra_metabolite.id)
+ if the_compartment is not None:
+ try:
+ sbml_species.setCompartment(the_compartment)
+ except:
+ warn('metabolite failed: ' + the_id)
+ return cobra_metabolite
+ if cobra_metabolite.charge is not None:
+ sbml_species.setCharge(cobra_metabolite.charge)
+ if hasattr(cobra_metabolite.formula, 'id') or \
+ hasattr(cobra_metabolite.notes, 'items'):
+ tmp_note = '<html xmlns="http://www.w3.org/1999/xhtml">'
+ if hasattr(cobra_metabolite.formula, 'id'):
+ tmp_note += '%sFORMULA: %s%s'%(note_start_tag,
+ cobra_metabolite.formula.id,
+ note_end_tag)
+ if hasattr(cobra_metabolite.notes, 'items'):
+ for the_id_type, the_id in cobra_metabolite.notes.items():
+ if the_id_type.lower() == 'charge':
+ continue #Use of notes['CHARGE'] has been deprecated in favor of metabolite.charge
+ if not isinstance(the_id_type, str):
+ the_id_type = str(the_id_type)
+ if hasattr(the_id, '__iter__') and len(the_id) == 1:
+ the_id = the_id[0]
+ if not isinstance(the_id, str):
+ the_id = str(the_id)
+ tmp_note += '%s%s: %s%s'%(note_start_tag,
+ the_id_type,
+ the_id, note_end_tag)
+ sbml_species.setNotes(tmp_note + '</html>')
+ return metabolite_id
+
+
+def fix_legacy_id(id, use_hyphens=False, fix_compartments=False):
+ id = id.replace('_DASH_', '__')
+ id = id.replace('_FSLASH_', '/')
+ id = id.replace('_BSLASH_', "\\")
+ id = id.replace('_LPAREN_', '(')
+ id = id.replace('_LSQBKT_', '[')
+ id = id.replace('_RSQBKT_', ']')
+ id = id.replace('_RPAREN_', ')')
+ id = id.replace('_COMMA_', ',')
+ id = id.replace('_PERIOD_', '.')
+ id = id.replace('_APOS_', "'")
+ id = id.replace('&', '&')
+ id = id.replace('<', '<')
+ id = id.replace('>', '>')
+ id = id.replace('"', '"')
+ if use_hyphens:
+ id = id.replace('__', '-')
+ else:
+ id = id.replace("-", "__")
+ if fix_compartments:
+ if len(id) > 2:
+ if (id[-3] == "(" and id[-1] == ")") or \
+ (id[-3] == "[" and id[-1] == "]"):
+ id = id[:-3] + "_" + id[-2]
+ return id
+
+
+def read_legacy_sbml(filename, use_hyphens=False):
+ """read in an sbml file and fix the sbml id's"""
+ model = create_cobra_model_from_sbml_file(filename, old_sbml=True)
+ for metabolite in model.metabolites:
+ metabolite.id = fix_legacy_id(metabolite.id)
+ model.metabolites._generate_index()
+ for reaction in model.reactions:
+ reaction.id = fix_legacy_id(reaction.id)
+ if reaction.id.startswith("EX_") and reaction.id.endswith("(e)"):
+ reaction.id = reaction.id[:-3] + "_e"
+ model.reactions._generate_index()
+ # remove boundary metabolites (end in _b and only present in exchanges)
+ for metabolite in list(model.metabolites):
+ if not metabolite.id.endswith("_b"):
+ continue
+ if len(metabolite._reaction) == 1:
+ if list(metabolite._reaction)[0].id.startswith("EX_"):
+ metabolite.remove_from_model()
+ model.metabolites._generate_index()
+ return model
diff --git a/cobra/manipulation/__init__.py b/cobra/manipulation/__init__.py
new file mode 100644
index 0000000..188be8a
--- /dev/null
+++ b/cobra/manipulation/__init__.py
@@ -0,0 +1,3 @@
+from .delete import delete_model_genes, undelete_model_genes
+from .modify import initialize_growth_medium, convert_to_irreversible, \
+ revert_to_reversible
diff --git a/cobra/manipulation/delete.py b/cobra/manipulation/delete.py
new file mode 100644
index 0000000..5635984
--- /dev/null
+++ b/cobra/manipulation/delete.py
@@ -0,0 +1,218 @@
+import re
+from copy import deepcopy
+from warnings import warn
+
+
+# compile regular expressions now instead of in every function call
+spontaneous_re = re.compile('(^|(?<=( |\()))s0001(?=( |\)|$))')
+and_re = re.compile(r'\band\b')
+or_re = re.compile(r'\bor\b')
+
+
+def prune_unused_metabolites(cobra_model):
+ """Removes metabolites that aren't involved in any reactions in the model
+
+ cobra_model: A Model object.
+
+ """
+ inactive_metabolites = []
+ active_metabolites = []
+ for the_metabolite in cobra_model.metabolites:
+ if len(the_metabolite._reaction) == 0:
+ the_metabolite.remove_from_model(cobra_model)
+ inactive_metabolites.append(the_metabolite)
+ else:
+ active_metabolites.append(the_metabolite)
+ if inactive_metabolites:
+ return inactive_metabolites
+ else:
+ warn('All metabolites used in at least 1 reaction')
+
+
+def prune_unused_reactions(cobra_model):
+ """Removes reactions from cobra_model.
+
+ cobra_model: A Model object.
+
+ reactions_to_prune: None, a string matching a reaction.id, a
+ cobra.Reaction, or as list of the ids / Reactions to remove from
+ cobra_model. If None then the function will delete reactions that have no
+ active metabolites in the model.
+
+ """
+ pruned_reactions = []
+ reactions_to_prune = [x for x in cobra_model.reactions
+ if len(x._metabolites) == 0]
+ for the_reaction in reactions_to_prune:
+ try:
+ the_reaction.remove_from_model(cobra_model)
+ pruned_reactions.append(the_reaction)
+ except:
+ warn('%s not in %s' % (the_reaction.id, cobra_model.id))
+ if not pruned_reactions:
+ warn('All reactions have at least 1 metabolite')
+ return
+
+
+def undelete_model_genes(cobra_model):
+ """Undoes the effects of a call to delete_model_genes in place.
+
+ cobra_model: A cobra.Model which will be modified in place
+
+ """
+
+ if cobra_model._trimmed_genes is not None:
+ for x in cobra_model._trimmed_genes:
+ x.functional = True
+
+ if cobra_model._trimmed_reactions is not None:
+ for the_reaction, (lower_bound, upper_bound) in \
+ cobra_model._trimmed_reactions.items():
+ the_reaction.lower_bound = lower_bound
+ the_reaction.upper_bound = upper_bound
+
+ cobra_model._trimmed_genes = []
+ cobra_model._trimmed_reactions = {}
+ cobra_model._trimmed = False
+
+
+def get_compiled_gene_reaction_rules(cobra_model):
+ """Generates a dict of compiled gene_reaction_rules
+
+ Any gene_reaction_rule expressions which cannot be compiled or do not
+ evaluate after compiling will be excluded. The result can be used in the
+ find_gene_knockout_reactions function to speed up evaluation of these
+ rules.
+
+ """
+ rules = {}
+ # some gene names can not be put through eval
+ bad_genes = {g for g in cobra_model.genes if g.id[0].isdigit() or
+ not g.id.isalnum()}
+ for reaction in cobra_model.reactions:
+ try:
+ if len(bad_genes.intersection(reaction.genes)) > 0:
+ continue
+ rules[reaction.id] = compile(reaction.gene_reaction_rule,
+ '<string>', 'eval')
+ except SyntaxError:
+ # This is necessary because some gene_reaction_rules do not
+ # compile.
+ None
+ return rules
+
+
+def find_gene_knockout_reactions(cobra_model, gene_list,
+ compiled_gene_reaction_rules={}):
+ """identify reactions which will be disabled when the genes are knocked out
+
+ cobra_model: :class:`~cobra.core.Model.Model`
+
+ gene_list: iterable of :class:`~cobra.core.Gene.Gene`
+
+ compiled_gene_reaction_rules: dict of {reaction_id: compiled_string}
+ If provided, this gives pre-compiled gene_reaction_rule strings.
+ The compiled rule strings can be evaluated much faster. If a rule
+ is not provided, the regular expression evaluation will be used.
+ Because not all gene_reaction_rule strings can be evaluated, this
+ dict must exclude any rules which can not be used with eval.
+
+ """
+
+ potential_reactions = set()
+ for x in gene_list:
+ potential_reactions.update(x._reaction)
+
+ knocked_out_reactions = []
+ for the_reaction in potential_reactions:
+ # Attempt to use the compiled gene reaction rule if provided
+ if the_reaction.id in compiled_gene_reaction_rules:
+ gene_state = {i.id: False if i in gene_list else True
+ for i in the_reaction._genes}
+ result = eval(compiled_gene_reaction_rules[the_reaction.id],
+ {}, gene_state)
+ if result is False:
+ knocked_out_reactions.append(the_reaction)
+ continue
+ elif result is True:
+ continue
+
+ # operates on a copy
+ gene_reaction_rule = and_re.sub("*", the_reaction.gene_reaction_rule)
+ gene_reaction_rule = or_re.sub("+", gene_reaction_rule)
+ # To prevent shorter gene names from replacing substrings in
+ # longer names, go in order from longest to shortest.
+ reaction_genes = sorted(the_reaction._genes, reverse=True,
+ key=lambda x: len(x.id))
+ # Replace each gene in the gpr string with 1 if it is still
+ # active, or 0 if it is being knocked out.
+ for gene in reaction_genes:
+ if gene in gene_list:
+ gene_reaction_rule = gene_reaction_rule.replace(gene.id, '0')
+ else:
+ gene_reaction_rule = gene_reaction_rule.replace(gene.id, '1')
+ gene_reaction_rule = spontaneous_re.sub('1', gene_reaction_rule)
+ if not eval(gene_reaction_rule): # evaluates to 0 when gpr is false
+ knocked_out_reactions.append(the_reaction)
+ return knocked_out_reactions
+
+
+def delete_model_genes(cobra_model, gene_list,
+ cumulative_deletions=True, disable_orphans=False):
+ """delete_model_genes will set the upper and lower bounds for reactions
+ catalysed by the genes in gene_list if deleting the genes means that
+ the reaction cannot proceed according to
+ cobra_model.reactions[:].gene_reaction_rule
+
+ cumulative_deletions: False or True. If True then any previous
+ deletions will be maintained in the model.
+
+ """
+ if disable_orphans:
+ raise NotImplementedError("disable_orphans not implemented")
+ if not hasattr(cobra_model, '_trimmed'):
+ cobra_model._trimmed = False
+ cobra_model._trimmed_genes = []
+ cobra_model._trimmed_reactions = {} # Store the old bounds in here.
+ # older models have this
+ if cobra_model._trimmed_genes is None:
+ cobra_model._trimmed_genes = []
+ if cobra_model._trimmed_reactions is None:
+ cobra_model._trimmed_reactions = {}
+ # Allow a single gene to be fed in as a string instead of a list.
+ if not hasattr(gene_list, '__iter__') or \
+ hasattr(gene_list, 'id'): # cobra.Gene has __iter__
+ gene_list = [gene_list]
+
+ if not hasattr(gene_list[0], 'id'):
+ if gene_list[0] in cobra_model.genes:
+ tmp_gene_dict = dict([(x.id, x) for x in cobra_model.genes])
+ else:
+ # assume we're dealing with names if no match to an id
+ tmp_gene_dict = dict([(x.name, x) for x in cobra_model.genes])
+ gene_list = [tmp_gene_dict[x] for x in gene_list]
+
+ # Make the genes non-functional
+ for x in gene_list:
+ x.functional = False
+
+ if cumulative_deletions:
+ gene_list.extend(cobra_model._trimmed_genes)
+ else:
+ undelete_model_genes(cobra_model)
+
+ for the_reaction in find_gene_knockout_reactions(cobra_model, gene_list):
+ # Running this on an already deleted reaction will overwrite the
+ # stored reaction bounds.
+ if the_reaction in cobra_model._trimmed_reactions:
+ continue
+ old_lower_bound = the_reaction.lower_bound
+ old_upper_bound = the_reaction.upper_bound
+ cobra_model._trimmed_reactions[the_reaction] = (old_lower_bound,
+ old_upper_bound)
+ the_reaction.lower_bound = 0.
+ the_reaction.upper_bound = 0.
+ cobra_model._trimmed = True
+
+ cobra_model._trimmed_genes = list(set(cobra_model._trimmed_genes +
+ gene_list))
diff --git a/cobra/manipulation/modify.py b/cobra/manipulation/modify.py
new file mode 100644
index 0000000..ae977d0
--- /dev/null
+++ b/cobra/manipulation/modify.py
@@ -0,0 +1,179 @@
+from copy import deepcopy
+from warnings import warn
+
+from .. import Reaction
+
+
+def initialize_growth_medium(cobra_model, the_medium='MgM',
+ external_boundary_compartment='e',
+ external_boundary_reactions=None,
+ reaction_lower_bound=0.,
+ reaction_upper_bound=1000.,
+ irreversible=False,
+ reactions_to_disable=None):
+ """Sets all of the input fluxes to the model to zero and then will
+ initialize the input fluxes to the values specified in the_medium if
+ it is a dict or will see if the model has a composition dict and use
+ that to do the initialization.
+
+ cobra_model: A cobra.Model object.
+
+
+ the_medium: A string, or a dictionary.
+ If a string then the initialize_growth_medium function expects that
+ the_model has an attribute dictionary called media_compositions, which is a
+ dictionary of dictionaries for various medium compositions. Where a medium
+ composition is a dictionary of external boundary reaction ids for the
+ medium components and the external boundary fluxes for each medium
+ component.
+
+
+ external_boundary_compartment: None or a string.
+ If not None then it specifies the compartment in which to disable all of
+ the external systems boundaries.
+
+ external_boundary_reactions: None or a list of external_boundaries that are
+ to have their bounds reset. This acts in conjunction with
+ external_boundary_compartment.
+
+
+ reaction_lower_bound: Float. The default value to use for the lower
+ bound for the boundary reactions.
+
+ reaction_upper_bound: Float. The default value to use for the upper
+ bound for the boundary.
+
+ irreversible: Boolean. If the model is irreversible then the medium
+ composition is taken as the upper bound
+
+ reactions_to_disable: List of reactions for which the upper and lower
+ bounds are disabled. This is superceded by the contents of
+ media_composition
+
+ """
+ # Zero all of the inputs to the model
+ if hasattr(the_medium, 'keys'):
+ medium_composition = the_medium
+ else:
+ if hasattr(cobra_model, 'media_compositions'):
+ if the_medium in cobra_model.media_compositions:
+ medium_composition = cobra_model.media_compositions[the_medium]
+ else:
+ raise Exception("%s is not in the model's media list" %
+ the_medium)
+ else:
+ raise Exception("the model doesn't have attribute "
+ "media_compositions and the medium is not a dict")
+ if external_boundary_reactions is not None:
+ if isinstance(external_boundary_reactions[0], str):
+ external_boundary_reactions = map(cobra_model.reactions.get_by_id,
+ external_boundary_reactions)
+ elif external_boundary_compartment is None:
+ warn("We are initializing the medium without first adjusting all"
+ "external boundary reactions")
+
+ # Select the system_boundary reactions to reset
+ if external_boundary_compartment is not None:
+ _system_boundaries = dict([(x, x.get_compartments())
+ for x in cobra_model.reactions
+ if x.boundary == 'system_boundary'])
+ [_system_boundaries.pop(k) for k, v in list(_system_boundaries.items())
+ if len(v) == 1 and external_boundary_compartment not in v]
+ if external_boundary_reactions is None:
+ external_boundary_reactions = _system_boundaries.keys()
+ else:
+ external_boundary_reactions += _system_boundaries.keys()
+
+ for the_reaction in external_boundary_reactions:
+ the_reaction.lower_bound = reaction_lower_bound
+ if the_reaction.upper_bound == 0:
+ the_reaction.upper_bound = reaction_upper_bound
+ # Disable specified reactions
+ if reactions_to_disable is not None:
+ if isinstance(reactions_to_disable[0], str):
+ reactions_to_disable = map(cobra_model.reactions.get_by_id,
+ reactions_to_disable)
+ for the_reaction in reactions_to_disable:
+ the_reaction.lower_bound = the_reaction.upper_bound = 0.
+
+ # Update the model inputs based on the_medium
+ for the_component in medium_composition.keys():
+ the_reaction = cobra_model.reactions.get_by_id(the_component)
+ if irreversible:
+ the_reaction.upper_bound = medium_composition[the_component]
+ else:
+ the_reaction.lower_bound = medium_composition[the_component]
+
+
+def convert_to_irreversible(cobra_model):
+ """Split reversible reactions into two irreversible reactions
+
+ These two reactions will proceed in opposite directions. This
+ guarentees that all reactions in the model will only allow
+ positive flux values, which is useful for some modeling problems.
+
+ cobra_model: A Model object which will be modified in place.
+
+ """
+ reactions_to_add = []
+ for reaction in cobra_model.reactions:
+ # If a reaction is reverse only, the forward reaction (which
+ # will be constrained to 0) will be left in the model.
+ if reaction.lower_bound < 0:
+ reverse_reaction = Reaction(reaction.id + "_reverse")
+ reverse_reaction.lower_bound = 0
+ reverse_reaction.upper_bound = reaction.lower_bound * -1
+ reverse_reaction.objective_coefficient = \
+ reaction.objective_coefficient * -1
+ reaction.lower_bound = 0
+ # Make the directions aware of each other
+ reaction.reflection = reverse_reaction
+ reverse_reaction.reflection = reaction
+ reaction_dict = dict([(k, v*-1)
+ for k, v in reaction._metabolites.items()])
+ reverse_reaction.add_metabolites(reaction_dict)
+ reverse_reaction._model = reaction._model
+ reverse_reaction._genes = reaction._genes
+ for gene in reaction._genes:
+ gene._reaction.add(reverse_reaction)
+ reverse_reaction._gene_reaction_rule = reaction._gene_reaction_rule
+ reactions_to_add.append(reverse_reaction)
+ cobra_model.add_reactions(reactions_to_add)
+
+
+def revert_to_reversible(cobra_model, update_solution=True):
+ """This function will convert a reversible model made by
+ convert_to_irreversible into a reversible model.
+
+ cobra_model: A cobra.Model which will be modified in place.
+
+ """
+ reverse_reactions = [x for x in cobra_model.reactions
+ if x.reflection is not None and
+ x.id.endswith('_reverse')]
+
+ # If there are no reverse reactions, then there is nothing to do
+ if len(reverse_reactions) == 0:
+ return
+
+ for reverse in reverse_reactions:
+ forward = reverse.reflection
+ forward.lower_bound = -reverse.upper_bound
+ forward.reflection = None
+ # Since the metabolites and genes are all still in
+ # use we can do this faster removal step. We can
+ # probably speed things up here.
+ cobra_model.remove_reactions(reverse_reactions)
+ # fix the solution
+ if update_solution and cobra_model.solution is not None and \
+ cobra_model.solution.status != "NA":
+ x_dict = cobra_model.solution.x_dict
+ # Check if the model was optimized while it was still reversible. If so
+ # then the solution does not need to be fixed.
+ if reverse_reactions[0].id not in x_dict:
+ return
+ # Update x and x_dict to correct for reverse flux.
+ for reverse in reverse_reactions:
+ forward = reverse.reflection
+ x_dict[forward.id] -= x_dict.pop(reverse.id)
+ cobra_model.solution.x = [x_dict[r.id] for r in cobra_model.reactions]
diff --git a/cobra/mlab/__init__.py b/cobra/mlab/__init__.py
new file mode 100644
index 0000000..5741d75
--- /dev/null
+++ b/cobra/mlab/__init__.py
@@ -0,0 +1,15 @@
+from os import name as __name
+from sys import modules as __modules
+from warnings import warn
+if __name == 'java':
+ warn("%s is not yet supported on jython"%__modules[__name__])
+else:
+ from mlab import *
+del __name, __modules
+
+__doc__ = """
+Provides python functions which are useful for interacting with MATLAB
+by using the mlabwrap library.
+
+To use MATLAB functions directly, see cobra.matlab
+"""
diff --git a/cobra/mlab/matlab_scripts/cell_to_string.m b/cobra/mlab/matlab_scripts/cell_to_string.m
new file mode 100644
index 0000000..bfcf58f
--- /dev/null
+++ b/cobra/mlab/matlab_scripts/cell_to_string.m
@@ -0,0 +1,3 @@
+function the_string = cell_to_string( the_cell_array )
+ the_string = sprintf( '%s\t', the_cell_array{:} );
+
diff --git a/cobra/mlab/matlab_scripts/create_container.m b/cobra/mlab/matlab_scripts/create_container.m
new file mode 100644
index 0000000..ba9f2e7
--- /dev/null
+++ b/cobra/mlab/matlab_scripts/create_container.m
@@ -0,0 +1,2 @@
+function the_container = create_container(the_keys, the_values)
+ the_container = containers.Map(the_keys, the_values);
diff --git a/cobra/mlab/matlab_scripts/load_mat.m b/cobra/mlab/matlab_scripts/load_mat.m
new file mode 100644
index 0000000..0d21abb
--- /dev/null
+++ b/cobra/mlab/matlab_scripts/load_mat.m
@@ -0,0 +1,3 @@
+function loaded_object = load_mat( the_filename )
+ loaded_object = load( the_filename);
+
diff --git a/cobra/mlab/matlab_scripts/save_from_python.m b/cobra/mlab/matlab_scripts/save_from_python.m
new file mode 100644
index 0000000..ce47cff
--- /dev/null
+++ b/cobra/mlab/matlab_scripts/save_from_python.m
@@ -0,0 +1,3 @@
+function [] = save_from_python( the_file, the_model )
+ save the_file the_model;
+
diff --git a/cobra/mlab/mlab.py b/cobra/mlab/mlab.py
new file mode 100644
index 0000000..50705a6
--- /dev/null
+++ b/cobra/mlab/mlab.py
@@ -0,0 +1,405 @@
+#cobra.mlab.py
+#System modules
+import cPickle, numpy, os, cobra, warnings
+from copy import deepcopy
+from scipy.sparse import dok_matrix
+from .. import Model, Reaction, Metabolite, Formula, ArrayBasedModel
+
+from mlabwrap import mlab as matlab
+
+# give an interface to the mlab system through cobra.matlab
+cobra.matlab = matlab
+matlab.__doc__ = """
+This is an mlabwrap connection to MATLAB which can be used to call
+MATLAB functions. For example, if model is a python model, the following
+can be used to optimize the model in MATLAB:
+> matlab_model = cobra.mlab.cobra_model_object_to_cobra_matlab_struct(model)
+> result = cobra.matlab.optimizeCbModel(matlab_model)
+
+Any MATLAB function can be called this way"""
+
+# add path with module's python scripts to the MATLAB path
+mlab_path = os.path.join(cobra.__path__[0], 'mlab', 'matlab_scripts')
+matlab.addpath(mlab_path)
+
+_possible_cobra_locations = ["~/MATLAB/cobra", "~/cobra",
+ "~/Documents/MATLAB/cobra", "~/Documents/opencobra/matlab/cobra"]
+
+def init_matlab_toolbox(matlab_cobra_path=None, discover_functions=True):
+ """initialize the matlab cobra toolbox, and load its functions
+ into mlab's namespace (very useful for ipython tab completion)
+
+ matlab_cobra_path: the path to the directory containing the MATLAB
+ cobra installation. Using the default None will attempt to find the
+ toolbox in the MATLAB path
+
+ discover_functions: Whether mlabwrap should autodiscover all cobra toolbox
+ functions in matlab. This is convenient for tab completion, but may take
+ some time."""
+ # find initCobraToolbox.m
+ if matlab_cobra_path is None:
+ matlab_cobra_path = os.path.split(
+ cobra.matlab.which('initCobraToolbox'))[0]
+ if matlab_cobra_path == "":
+ for i in _possible_cobra_locations:
+ poss_path = os.path.expanduser(i)
+ if os.path.isfile(poss_path + "/initCobraToolbox.m"):
+ matlab_cobra_path = poss_path
+ break
+ if not os.path.isfile(os.path.join(matlab_cobra_path,
+ "initCobraToolbox.m")):
+ print "initCobraToolbox not found in given path"
+ return
+ # store the current directory so we can return to it
+ curdir = os.path.abspath(os.curdir)
+ os.chdir(matlab_cobra_path)
+ matlab.initCobraToolbox()
+ os.chdir(curdir)
+ # discover MATLAB functions
+ for matlab_func in ["plot", "figure", "hist", "load", "find"]:
+ getattr(matlab, matlab_func)
+ for filename in os.listdir(mlab_path):
+ getattr(matlab, filename.replace(".m", ""))
+ if not discover_functions:
+ return # done now, do not need to find matlab cobra functions
+ with warnings.catch_warnings():
+ warnings.simplefilter("ignore")
+ walker = os.walk(matlab_cobra_path)
+ # skip docs and external
+ dirpath, dirnames, filenames = walker.next()
+ dirnames.pop(dirnames.index("external"))
+ dirnames.pop(dirnames.index("docs"))
+ for root, dirs, files in walker:
+ for filename in files:
+ if filename.endswith(".m"):
+ try:
+ getattr(matlab, filename.replace(".m", ""))
+ except:
+ continue
+
+
+#Project defined modules
+def matlab_cell_to_python_list(the_cell):
+ try:
+ import mlabwrap
+ except ImportError:
+ print 'Could not import mlabwrap: ' + ImportError + '\n'
+ return False
+ #the_list = mlabwrap.mlab.cell_to_string(the_cell).rstrip('\t').split('\t')
+ #Because the mlabwrap.mlab.cell_to_string function will end with a tab, it must
+ #be removed. Use indexing instead of rstrip because rstrip will mess up
+ #when the last element in the string is empty.
+ the_list = mlabwrap.mlab.cell_to_string(the_cell).split('\t')
+ return the_list[:len(the_list) - 1]
+
+def matlab_logical_to_python_logical(the_logical):
+ try:
+ import mlabwrap
+ except ImportError:
+ print 'Could not import mlabwrap: ' + ImportError + '\n'
+ return False
+ if mlabwrap.mlab.double(the_logical)[0][0] == 1:
+ return True
+ else:
+ return False
+
+def python_list_to_matlab_cell(the_list, transpose = False):
+ try:
+ import mlabwrap
+ except ImportError:
+ print 'Could not load mlabwrap ' + ImportError + '\n'
+ return False
+ if hasattr(the_list[0], 'id'):
+ the_list = [x.id for x in the_list]
+ #Remove the single apostrophes because matlab or mlabwrap has
+ #problems with them.
+ the_list = [x.replace(r"'",'') for x in the_list]
+ the_string = '{' + str(the_list).lstrip('[').rstrip(']') + '}'
+ if transpose:
+ the_string = the_string.replace(',',';')
+ return mlabwrap.mlab.eval(the_string)
+
+def matlab_sparse_to_scipy_sparse(matlab_sparse_matrix):
+ try:
+ import mlabwrap
+ import scipy.sparse
+ except ImportError:
+ print 'Could not load mlabwrap or scipy ' + ImportError + '\n'
+ return False
+ [row_indices, column_indices, the_values] = mlabwrap.mlab.find(matlab_sparse_matrix , nout = 3)
+ #Change to 0-based indices
+ row_indices = row_indices - 1
+ column_indices = column_indices - 1
+ the_shape = mlabwrap.mlab.size(matlab_sparse_matrix)
+ the_shape = tuple(map(int, the_shape[0,]))
+ #This could be sped up by using a dok_matrix and zipping the indices and values
+ #scipy_sparse_matrix = scipy.sparse_dok.matrix(the_shape)
+ #scipy_sparse_matrix.update(zip(zip(row_indices, column_indices), the_values))
+ #return scipy_sparse_matrix.tolil()
+ scipy_sparse_matrix = scipy.sparse.lil_matrix(the_shape)
+ for i in range(len(the_values)):
+ scipy_sparse_matrix[int(row_indices[i][0]), int(column_indices[i][0])] = the_values[i][0]
+ return scipy_sparse_matrix
+
+def scipy_sparse_to_mlab_sparse(scipy_sparse_matrix):
+ """A more efficient method is needed for when the
+ matrix is so big that making a dense version
+ is a waste of computer effort."""
+ try:
+ import mlabwrap
+ except ImportError:
+ print 'Could not load mlabwrap ' + ImportError + '\n'
+ return False
+ return mlabwrap.mlab.sparse(scipy_sparse_matrix.todense())
+
+def matlab_sparse_to_numpy_array(matlab_sparse_matrix):
+ try:
+ import mlabwrap
+ import numpy
+ except ImportError:
+ print 'Could not load mlabwrap or numpy ' + ImportError + '\n'
+ return False
+ [row_indices, column_indices, the_values] = mlabwrap.mlab.find(matlab_sparse_matrix , nout = 3)
+ #Change to 0-based indices
+ row_indices = row_indices - 1
+ column_indices = column_indices - 1
+ the_shape = mlabwrap.mlab.size(matlab_sparse_matrix)
+ numpy_array = numpy.zeros(the_shape[0,])
+ for i in range(len(the_values)):
+ numpy_array[int(row_indices[i][0]), int(column_indices[i][0])] = the_values[i][0]
+ return numpy_array
+
+def numpy_array_to_mlab_sparse(numpy_array):
+ """A more efficient method is needed for when the
+ matrix is so big that making a dense version
+ is a waste of computer effort."""
+ try:
+ import mlabwrap
+ except ImportError:
+ print 'Could not load mlabwrap ' + ImportError + '\n'
+ return False
+
+ return mlabwrap.mlab.sparse(numpy_array)
+
+def matlab_cobra_struct_to_python_cobra_object(matlab_struct):
+ """Converts a COBRA toolbox 2.0 struct into a cobra.Model object using the mlabwrap matlab proxy
+
+ """
+
+ from cobra import Model
+ try:
+ from mlabwrap import mlab as matlab
+ except:
+ raise Exception('mlabwrap and MATLAB are required to use these functions. '+\
+ 'They only function on Mac OS X and GNU/Linux')
+ from copy import deepcopy
+ from numpy import array
+ from cobra.mlab import matlab_cell_to_python_list, matlab_sparse_to_scipy_sparse
+ struct_fields = matlab_cell_to_python_list(matlab.fields(matlab_struct, nout=1))
+ _S_dok = dok_matrix(matlab_sparse_to_scipy_sparse(matlab_struct.S))
+ model_id = 'Matlab_Import'
+ if 'description' in struct_fields:
+ model_id = str(deepcopy(matlab_struct.description))
+ the_model = Model(model_id)
+ #Metabolite section
+ #Deal with lack of compartment support in the COBRA Toolbox
+ the_metabolites = matlab_cell_to_python_list(matlab_struct.mets)
+ cobra_metabolites = []
+ if the_metabolites[0].endswith(']'):
+ [cobra_metabolites.append(Metabolite('%s_%s'%(x[:-3], x[-2]),
+ compartment=x[-2]))
+ for x in the_metabolites]
+ elif the_metabolites[0][-2] == '_':
+ [cobra_metabolites.append(Metabolite('%s_%s'%(x[:-2],x[-1]),
+ compartment=x[-1]))
+ for x in the_metabolites]
+ else:
+ raise Exception("Don't know how to extract compartment from %s"%the_metabolites[0])
+ _b = deepcopy(matlab_struct.b).tolist()
+ if 'metNames' in struct_fields:
+ _metabolite_names = matlab_cell_to_python_list(matlab_struct.metNames)
+ else:
+ _metabolite_names = ['']*len(cobra_metabolites)
+
+ if 'csense' in struct_fields:
+ if isinstance(matlab_struct.csense, str):
+ the_csense = matlab_struct.csense
+ _constraint_sense = [the_csense[i] for i in range(len(the_csense))]
+ else:
+ _constraint_sense = matlab_cell_to_python_list(matlab_struct.csense)
+ else:
+ _constraint_sense = ['E']*len(cobra_metabolites)
+ if 'metFormulas' in struct_fields:
+ _metabolite_formulas = matlab_cell_to_python_list(matlab_struct.metFormulas)
+ else:
+ _metabolite_formulas = ['']*len(the_model.metabolites)
+ if 'metCharge' in struct_fields:
+ _metabolite_charges = matlab_struct.metCharge.flatten().tolist()
+ else:
+ _metabolite_charges = [None]*len(cobra_metabolites)
+ if 'metCASID' in struct_fields:
+ _metabolite_cas_id = matlab_cell_to_python_list(matlab_struct.metCASID)
+ else:
+ _metabolite_cas_id = [None]*len(cobra_metabolites)
+ if 'metKeggID' in struct_fields:
+ _metabolite_kegg_id = matlab_cell_to_python_list(matlab_struct.metKeggID)
+ else:
+ _metabolite_kegg_id = [None]*len(cobra_metabolites)
+ the_compartments = {}
+ for the_metabolite, b, n, c, f, ch, cas, kegg in zip(cobra_metabolites,
+ _b,
+ _metabolite_names,
+ _constraint_sense,
+ _metabolite_formulas,
+ _metabolite_charges,
+ _metabolite_cas_id,
+ _metabolite_kegg_id):
+ the_metabolite._bound = b[0]
+ the_metabolite.name = n
+ the_metabolite._constraint_sense = c
+ the_metabolite.formula = Formula(f)
+
+ the_compartments[the_metabolite.compartment] = the_metabolite.compartment
+ if ch is not None:
+ the_metabolite.charge = the_metabolite.notes['CHARGE'] = int(ch)
+ if cas is not None and cas != '':
+ the_metabolite.notes['CASID'] = cas
+ if kegg is not None and kegg != '':
+ the_metabolite.notes['KEGGID'] = kegg
+
+ metabolite_dict = dict([(x.id, x)
+ for x in cobra_metabolites])
+ #Reaction section
+ cobra_reactions = map(Reaction, matlab_cell_to_python_list(matlab_struct.rxns))
+ _objective_coefficients = deepcopy(matlab_struct.c).tolist()
+ _lower_bounds = deepcopy(matlab_struct.lb).tolist()
+ _upper_bounds = deepcopy(matlab_struct.ub).tolist()
+ _reversibility = deepcopy(matlab_struct.rev).tolist()
+ if 'rxnNames' in struct_fields:
+ _reaction_names = matlab_cell_to_python_list(matlab_struct.rxnNames)
+ else:
+ _reaction_names = ['']*len(the_model.reactions)
+ if 'grRules' in struct_fields:
+ _gene_reaction_rules = matlab_cell_to_python_list(matlab_struct.grRules)
+ else:
+ _gene_reaction_rules = ['']*len(the_model.reactions)
+ if 'subSystems' in struct_fields:
+ _subsystems = matlab_cell_to_python_list(matlab_struct.subSystems)
+ else:
+ _subsystems = ['']*len(the_model.reactions)
+ for the_reaction, o, l, u, n, r, s, rev in zip(cobra_reactions,
+ _objective_coefficients,
+ _lower_bounds,
+ _upper_bounds,
+ _reaction_names,
+ _gene_reaction_rules,
+ _subsystems, _reversibility ):
+ the_reaction.objective_coefficient = o[0]
+ the_reaction.lower_bound = l[0]
+ the_reaction.upper_bound = u[0]
+ the_reaction.name = n
+ the_reaction.gene_reaction_rule = r
+ the_reaction.subsystem = s
+ the_reaction.reversibility = rev[0]
+ the_reaction.parse_gene_association()
+ index_to_reaction = dict(zip(range(len(cobra_reactions)),
+ cobra_reactions))
+ index_to_metabolite = dict(zip(range(len(cobra_metabolites)),
+ cobra_metabolites))
+ for k, coefficient in _S_dok.items():
+ the_reaction = index_to_reaction[k[1]]
+ the_metabolite = index_to_metabolite[k[0]]
+ the_reaction.add_metabolites({the_metabolite: coefficient})
+ #solution needs to be redesigned from a matlab proxy.
+ #Now populate all of the reactions
+ #NOTE: Having a metabolite referenece here would be a good idea
+ compartment_dict = {'e': 'extracellular',
+ 'c': 'cytosol',
+ 'p': 'periplasm'}
+ for the_key in the_compartments:
+ if the_key in compartment_dict:
+ the_compartments[the_key] = compartment_dict[the_key]
+ the_model.add_reactions(cobra_reactions)
+ the_model.compartments = the_compartments
+ the_model.solution = None
+ return the_model
+
+
+def cobra_model_object_to_cobra_matlab_struct(cobra_model):
+ """This function converts all of the object values to the
+ corresponding model fields to update the mlab model.
+
+ """
+ try:
+ from mlabwrap import mlab as matlab
+ except:
+ raise Exception('mlabwrap and MATLAB are required to use these functions. '+\
+ 'They only function on Mac OS X and GNU/Linux')
+ from cobra.mlab import python_list_to_matlab_cell, scipy_sparse_to_mlab_sparse
+ if hasattr(cobra_model, 'to_array_based_model'):
+ cobra_model = cobra_model.to_array_based_model()
+ else:
+ cobra_model.update()
+ matlab_struct = matlab.struct()
+ #Things that need a conversion: S, rxnGeneMat,
+ matlab_struct.mets = python_list_to_matlab_cell([x.id for x in cobra_model.metabolites],
+ transpose = True)
+ matlab_struct.metNames = python_list_to_matlab_cell([x.name for x in cobra_model.metabolites],
+ transpose = True)
+ matlab_struct.metFormulas = python_list_to_matlab_cell([x.formula
+ for x in cobra_model.metabolites],
+ transpose = True)
+ matlab_struct.genes = python_list_to_matlab_cell(cobra_model.genes, transpose = True)
+ matlab_struct.grRules = python_list_to_matlab_cell([x.gene_reaction_rule
+ for x in cobra_model.reactions],
+ transpose = True)
+ matlab_struct.rxns = python_list_to_matlab_cell([x.id for x in cobra_model.reactions],
+ transpose = True)
+ matlab_struct.rxnNames = python_list_to_matlab_cell([x.name
+ for x in cobra_model.reactions],
+ transpose = True)
+ matlab_struct.subSystems = python_list_to_matlab_cell([x.subsystem
+ for x in cobra_model.reactions],
+ transpose=True)
+
+ if hasattr(cobra_model, 'constraint_sense'):
+ matlab_struct.csense = reduce(lambda x,y: x+y, cobra_model.constraint_sense)
+ #matlab_struct.csense = python_list_to_matlab_cell(['E']*len(cobra_model.metabolites), transpose = True)
+ #TODO: inefficient conversion but who cares? matlab's on its way out
+ matlab_struct.S = scipy_sparse_to_mlab_sparse(cobra_model.S)
+ #Things that can be directly copied
+ matlab_struct.b = cobra_model.b
+ matlab_struct.c = cobra_model.objective_coefficients
+ matlab_struct.lb = cobra_model.lower_bounds
+ matlab_struct.ub = cobra_model.upper_bounds
+ matlab_struct.rev = [x.reversibility for x in cobra_model.reactions]
+ matlab_struct.description = cobra_model.description
+ return(matlab_struct)
+
+
+
+if __name__ == '__main__':
+ from cPickle import load
+ from time import time
+ from numpy import round
+ from cobra.manipulation import initialize_growth_medium
+ try:
+ matlab.changeCobraSolver('glpk','LP')
+ except AttributeError:
+ raise Exception('Could not run matlab function changeCobraSolver. Is the ' +\
+ 'COBRA Toolbox in your MATLAB path?')
+ test_directory = '../test/data/'
+ with open(test_directory + 'salmonella.pickle') as in_file:
+ cobra_model = load(in_file)
+ initialize_growth_medium(cobra_model, 'LPM')
+ py_cobra_solution = repr(cobra_model.solution.f)
+ matlab_struct = cobra_model_object_to_cobra_matlab_struct(cobra_model)
+
+ matlab_result = matlab.optimizeCbModel(matlab_struct)
+ matlab_solution = repr(float(matlab_result.f))
+ if py_cobra_solution[:4] == matlab_solution[:4]:
+ print 'SUCCESS: growth rate match between pyCOBRA and COBRA Toolbox: %s ~ %s'%(py_cobra_solution,
+ matlab_solution)
+ else:
+ print 'FAILURE: pyCOBRA and COBRA Toolbox do not match: %s !~ %s'%(py_cobra_solution,
+ matlab_solution)
diff --git a/cobra/oven/README b/cobra/oven/README
new file mode 100644
index 0000000..2eebc5a
--- /dev/null
+++ b/cobra/oven/README
@@ -0,0 +1,30 @@
+This is the location for self-contained add-ons that are currently baking. Please try to organize your buns into rational categories. Occasionally, I will reorganize items in a logical fashion as the module set grows and my vision develops.
+
+If you want to contribute to the oven, please create a directory with your sourceforge username and put all files in it.
+
+
+For modifications to the pre-existing code, please continue to use the patch tracker or contact the sourceforge username associated with the files.
+
+Please follow the python style guide
+ http://www.python.org/dev/peps/pep-0008/
+and document thoroughly. Modules that deviate from these two commandments will not make it into the core and may result in revocation of svn privileges.
+
+
+Also, remember the following:
+1) Document thoroughly. The world is much bigger than you really seem to think.
+2) No camelCase or camelToes no matter who sports them. The exception: classes must be defined with CamelToeCase.
+3) No non-standard lazy abbreviations kegg is acceptable mets, rxns, and
+coefs are not.
+4) phrasesmusthaveunderscores is bad phrases_must_have_underscores is
+good
+5) For default values in functions don't put spaces around the =. def
+my_cat(color = 'black') is bad. def my_cat(color='black') is good.
+6) Also, unless absolutely necessary you should import functions from modules and not use the whole path name. This allows for faster transitions if we need to change an upstream module or want to maintain python and jython compatibility, or want to test some new package.
+
+If a function something requires a very specific set of data files then it
+is best to make a module.
+
+
+Happy coding!
+
+Dr. S.
diff --git a/cobra/oven/WARNING b/cobra/oven/WARNING
new file mode 100644
index 0000000..82427cb
--- /dev/null
+++ b/cobra/oven/WARNING
@@ -0,0 +1 @@
+THIS DIRECTORY IS SUBJECT TO RANDOM MUTATIONS THAT ARE AESTHETICALLY APPEALING TO YOUR FRIENDLY FASCIST.
diff --git a/cobra/oven/__init__.py b/cobra/oven/__init__.py
new file mode 100644
index 0000000..ec281e6
--- /dev/null
+++ b/cobra/oven/__init__.py
@@ -0,0 +1,2 @@
+from warnings import warn
+warn("Functions in cobra.oven are still being baked thus are not officially supported and may not function")
diff --git a/cobra/oven/aliebrahim/__init__.py b/cobra/oven/aliebrahim/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/cobra/oven/aliebrahim/designAnalysis.py b/cobra/oven/aliebrahim/designAnalysis.py
new file mode 100644
index 0000000..a0dc2fc
--- /dev/null
+++ b/cobra/oven/aliebrahim/designAnalysis.py
@@ -0,0 +1,143 @@
+import numpy
+import pylab
+
+#from ... import solvers
+from cobra import solvers
+from itertools import combinations
+
+
+def plot_production_envelope(model, target_id, n_points=20, plot=True,
+ solver_name="glpk"):
+ """Plot the production envelope for the model given a target
+
+ Parameters
+ ----------
+ model : cobra model
+ The cobra model should already have the uptake rates se
+ target_id : str
+ The id of the exchange reaction for the target compound
+ n_points : int
+ The number of points to calculate for the production envolope
+ plot : bool, optional
+ Whether or not a plot should be made of the production envelope
+
+ Returns
+ -------
+ growth_rates : :class:`numpy.ndarray`
+ An array of growth rates
+ production_rates : :class:`numpy.ndarray`
+ An array of the corresponding maximum production rate at the
+ given growth rate.
+
+ """
+ solver = solvers.solver_dict[solver_name]
+ target_id = str(target_id)
+ target_reaction = model.reactions.get_by_id(target_id)
+ original_target_bounds = (target_reaction.lower_bound,
+ target_reaction.upper_bound)
+ lp = solver.create_problem(model)
+ if solver.solve_problem(lp) != "optimal":
+ return ([0], [0])
+ solution = solver.format_solution(lp, model)
+ max_growth_rate = solution.f
+ max_growth_production = solution.x_dict[target_reaction.id]
+ #growth_coupled = max_growth_production > 0
+ # extract the current objective so it can be changed
+ original_objectives = {}
+ for reaction in model.reactions:
+ if reaction.objective_coefficient != 0:
+ original_objectives[reaction] = reaction.objective_coefficient
+ reaction.objective_coefficient = 0
+ # calculate the maximum possible production rate
+ target_reaction.objective_coefficient = 1
+ model.optimize(objective_sense="minimize")
+ min_production_rate = model.solution.f
+ model.optimize(objective_sense="maximize")
+ max_production_rate = model.solution.f
+ production_rates = numpy.linspace(min_production_rate,
+ max_production_rate, n_points)
+ # ensure the point of production at maximum growth is included
+ production_rates[
+ numpy.abs(production_rates - max_growth_production).argmin()] = \
+ max_growth_production
+ # if the 0 point was overwritten in the last operation
+ if production_rates[0] != 0:
+ production_rates[1] = production_rates[0]
+ production_rates[0] = 0
+ growth_rates = production_rates * 0
+ # make the objective coefficient what it was before
+ target_reaction.objective_coefficient = 0
+ for reaction, coefficient in original_objectives.iteritems():
+ reaction.objective_coefficient = coefficient
+ # calculate the maximum growth rate at each production rate
+ for i in range(n_points):
+ target_reaction.lower_bound = production_rates[i]
+ target_reaction.upper_bound = production_rates[i]
+ solver.update_problem(lp, model)
+ if solver.solve_problem(lp) == "optimal":
+ growth_rates[i] = solver.get_objective_value(lp)
+ else:
+ growth_rates[i] = 0
+ # reset the bounds on the target reaction
+ target_reaction.lower_bound = original_target_bounds[0]
+ target_reaction.upper_bound = original_target_bounds[1]
+ if plot:
+ pylab.plot(growth_rates, production_rates)
+ pylab.title("Production envelope for %s" % (target_id))
+ pylab.xlabel("Growth rate")
+ pylab.ylabel("Production rate")
+ pylab.xlim(xmin=0)
+ pylab.ylim(ymin=0)
+ return (growth_rates, production_rates)
+
+
+def analyze_growth_coupled_num_knockouts(model, knockout_reaction, target_name="EX_etoh_e"):
+ None
+
+
+def analyze_growth_coupled_design_subset(model, knockout_reactions, knockout_count, target_name="EX_etoh_e"):
+ lp = model.optimize()
+ best_score = 0
+ best = []
+ lb = [None] * k # store lower bounds when reactions are knocked out
+ ub = [None] * k # store upper bounds when reactions are knocked out
+ for subset in combinations(knockout_reactions, knockout_reactions):
+ # knockout reactions
+ for i, reaction_name in enumerate(subset):
+ reaction = model.reactions.get_by_id(str(reaction_name))
+ (lb[i], ub[i]) = (reaction.lower_bound, reaction.upper_bound)
+ (reaction.lower_bound, reaction.upper_bound) = (0.0, 0.0)
+ model.optimize()
+ production = model.solution.x_dict[target_name]
+ # identical performance
+ if abs(production - best_score) < 0.001:
+ best.append(subset)
+ # better performance
+ elif production > best_score:
+ best_score = model.solution.x_dict[target_name]
+ best = [subset]
+ print model.solution.f, model.solution.x_dict[target_name]
+ # reset reactions
+ for i, reaction_name in enumerate(subset):
+ (reaction.lower_bound, reaction.upper_bound) = (lb[i], ub[i])
+ return best_score, best
+
+if __name__ == "__main__":
+ from cobra.test import ecoli_pickle, create_test_model
+ from time import time
+
+ model = create_test_model(ecoli_pickle)
+ #from IPython import embed; embed()
+ model.reactions.get_by_id("EX_o2_e").lower_bound = 0
+ #analyze_strain_design(model, ["ABTA", "ACALD", "ACKr", "ATPS4rpp", "F6PA",
+ # "GLUDy", "LDH_D", "MGSA", "PFL", "TPI"])
+
+ for i in ["ABTA", "ACALD", "ACKr", "ATPS4rpp", "F6PA",
+ "GLUDy", "LDH_D", "MGSA", "PFL", "TPI"]:
+ model.reactions.get_by_id(i).lower_bound = 0
+ model.reactions.get_by_id(i).upper_bound = 0
+ start = time()
+ plot_production_envelope(model, "EX_etoh_e", solver_name="glpk", n_points=40, plot=True)
+ print "ran in %.2f seconds" % (time() - start)
+ pylab.show()
+ # calculates in approx 1 seconds on 3.4 GHz i7
diff --git a/cobra/oven/aliebrahim/gapAnalysis.py b/cobra/oven/aliebrahim/gapAnalysis.py
new file mode 100644
index 0000000..e4c9d17
--- /dev/null
+++ b/cobra/oven/aliebrahim/gapAnalysis.py
@@ -0,0 +1,209 @@
+import cobra
+from cobra import Model, Reaction, Metabolite
+
+
+class SUXModelMILP(cobra.Model):
+ """Model with additional Universal and Exchange reactions.
+ Adds corresponding dummy reactions and dummy metabolites for each added
+ reaction which are used to impose MILP constraints to minimize the
+ total number of added reactions. See the figure for more
+ information on the structure of the matrix.
+ """
+ def __init__(self, model, Universal=None, threshold=0.05,
+ penalties={"Universal": 1, "Exchange": 1, "Demand": 1},
+ dm_rxns=False, ex_rxns=True):
+ cobra.Model.__init__(self, "")
+ # store parameters
+ self.threshold = threshold
+ self.penalties = penalties
+ # want to only operate on a copy of Universal so as not to mess up
+ # is this necessary?
+ if Universal is None:
+ Universal = cobra.Model("Universal_Reactions")
+ else:
+ Universal = Universal.copy()
+
+ # SUX += Exchange (when exchange generator has been written)
+ # For now, adding exchange reactions to Universal - could add to a new model called exchange and allow their addition or not....
+ if ex_rxns:
+ ex_reactions = [x for x in model.reactions if x.startswith('EX_')]
+ else:
+ ex_reactions = []
+
+ # ADD ALL EXCHANGE REACTIONS TO UNIVERSAL MODEL
+ for r in ex_reactions:
+ if r.lower_bound >= 0:
+ rxn = r.copy()
+ #model.remove_reaction(r)
+ rxn.id += "_gapfill"
+ rxn.lower_bound = -1000
+ Universal.add_reaction(rxn)
+
+ if dm_rxns:
+ # ADD DEMAND REACTIONS FOR ALL METABOLITES TO UNIVERSAL MODEL
+ for m in model.metabolites:
+ rxn = Reaction('DM_' + m.id)
+ rxn.lower_bound = -1000
+ rxn.upper_bound = 1000
+ rxn.add_metabolites({m: -1.0})
+ Universal.add_reaction(rxn)
+
+ cobra.manipulation.modify.convert_to_irreversible(Universal)
+
+ for rxn in Universal.reactions:
+ if rxn.startswith('EX_'):
+ rxn.notes["gapfilling_type"] = "Exchange"
+ elif rxn.startswith('DM_'):
+ rxn.notes["gapfilling_type"] = "Demand"
+ else:
+ rxn.notes["gapfilling_type"] = "Universal"
+ self += model
+ self += Universal
+
+ # Add MILP dummy reactions
+ v = 1000 # maximum flux in a reaction
+ # threshold = 0.05
+ dummy_reactions = []
+ # all reactions with an index < len(model.reactions) were original
+ self.original_reactions = self.reactions[:len(model.reactions)]
+ self.added_reactions = self.reactions[len(model.reactions):]
+
+ # add in the dummy reactions for each added reaction
+ # a dict will map from each added reaction (the key) to
+ # the dummy reaction (the value)
+ self._dummy_reaction_map = {}
+ for reaction in self.added_reactions:
+ dummy_metabolite = cobra.Metabolite("dummy_met_" + reaction.id)
+ dummy_metabolite._constraint_sense = "L"
+ reaction.add_metabolites({dummy_metabolite: 1})
+ the_dummy_reaction = cobra.Reaction("dummy_rxn_" + reaction.id)
+ the_dummy_reaction.add_metabolites({dummy_metabolite: -1 * v})
+ the_dummy_reaction.lower_bound = 0
+ the_dummy_reaction.upper_bound = 1
+ the_dummy_reaction.variable_kind = "integer"
+ dummy_reactions.append(the_dummy_reaction)
+ self._dummy_reaction_map[reaction] = the_dummy_reaction
+ self.add_reactions(dummy_reactions)
+ # add in the dummy metabolite for the actual objective function
+ self.objective_metabolite = cobra.Metabolite(
+ "dummy_metabolite_objective_function")
+ self.objective_metabolite._constraint_sense = "G"
+ self.objective_metabolite._bound = self.threshold
+ self._update_objectives()
+ # make .add_reaction(s) call the ._add_reaction(s) functions
+ self.add_reaction = self._add_reaction
+ self.add_reactions = self._add_reactions
+
+
+ def _update_objectives(self):
+ """Update the metabolite which encodes the objective function
+ with the objective coefficients for the reaction, and impose
+ penalties for added reactions.
+ """
+ for reaction in self.original_reactions:
+ reaction.add_metabolites({self.objective_metabolite: \
+ reaction.objective_coefficient})
+ reaction.objective_coefficient = 0
+ # now make the objective coefficient the penalty
+ for reaction in self.added_reactions:
+ reaction.objective_coefficient += \
+ self.penalties[reaction.notes["gapfilling_type"]]
+
+ def _add_reaction(self, reaction):
+ cobra.Model.add_reaction(self, reaction)
+ self.original_reactions.append(reaction)
+ self._update_objectives()
+
+ def _add_reactions(self, reactions):
+ cobra.Model.add_reactions(self, reactions)
+ self.original_reactions.extend(reactions)
+ self._update_objectives()
+
+ def solve(self, solver="glpk", iterations=1, debug=False, time_limit=100, **solver_parameters):
+ """solve the MILP problem"""
+ used_reactions = {}
+ numeric_error_cutoff = 0.0001
+ self._update_objectives()
+ for i in range(iterations):
+ used_reactions[i] = []
+ self.optimize(objective_sense="minimize", solver=solver, **solver_parameters)
+ if debug:
+ print "Iteration %d: Status is %s" % (i, self.solution.status)
+ for reaction in self.added_reactions:
+ # The dummy reaction should have a flux of either 0 or 1.
+ # If it is 1 (nonzero), then the reaction was used in
+ # the solution.
+
+ if self.solution.x_dict[self._dummy_reaction_map[
+ reaction].id] > numeric_error_cutoff:
+ used_reactions[i].append(reaction)
+ reaction.objective_coefficient += self.penalties[reaction.notes["gapfilling_type"]]
+ if debug:
+ print '\t', reaction, reaction.objective_coefficient
+
+ return used_reactions
+
+
+def growMatch(model, Universal, iterations=1, debug=False,
+ dm_rxns=False, ex_rxns=False, solver="glpk", time_limit=60, **solver_parameters):
+ """runs growMatch"""
+ model = model.copy()
+ SUX = SUXModelMILP(model, Universal, dm_rxns=dm_rxns, ex_rxns=ex_rxns)
+ used_reactions = SUX.solve(iterations=iterations, debug=debug,
+ solver=solver, time_limit=time_limit, **solver_parameters)
+ return used_reactions
+
+
+def SMILEY(model, metabolite_id, Universal, iterations=1, debug=False,
+ dm_rxns=False, ex_rxns=False, solver="glpk", time_limit=60, **solver_parameters):
+ """
+ runs the SMILEY algorithm to determine which gaps should be
+ filled in order for the model to create the metabolite with the
+ given metabolite_id.
+
+ This function is good for running the algorithm once. For more fine-
+ grained control, create a SUXModelMILP object, add a demand reaction
+ for the given metabolite_id, and call the solve function on the
+ SUXModelMILP object.
+ """
+ model = model.copy()
+ SUX = SUXModelMILP(model, Universal, dm_rxns=dm_rxns, ex_rxns=ex_rxns)
+ # change the objective to be the metabolite
+ for reaction in SUX.original_reactions:
+ reaction.objective_coefficient = 0
+ demand_reaction = cobra.Reaction("SMILEY_DEMAND_RXN_%s" % metabolite_id)
+ demand_reaction.objective_coefficient = 1
+ demand_reaction.add_metabolites(
+ {SUX.metabolites[SUX.metabolites.index(metabolite_id)]: -1})
+ SUX.add_reaction(demand_reaction)
+ used_reactions = SUX.solve(iterations=iterations, debug=debug,
+ solver=solver, time_limit=time_limit, **solver_parameters)
+ return used_reactions
+
+
+if __name__ == "__main__":
+ from cobra.test import create_test_model
+ import cobra
+ from time import time
+
+ model = create_test_model()
+
+ # create a Universal model containing some removed reactions
+ Universal = cobra.Model("Universal_Reactions")
+ for i in [i.id for i in model.metabolites.f6p_c.reactions]:
+ reaction = model.reactions.get_by_id(i)
+ Universal.add_reaction(reaction.copy())
+ reaction.remove_from_model(model)
+
+ # run growMatch
+ print "growMatch"
+ tic = time()
+ results = growMatch(model, Universal, debug=True)
+ toc = time()
+ print "%.2f sec for growmatch" % (toc - tic)
+ # run SMILEY
+ print "SMILEY"
+ tic = time()
+ SMILEY_results = SMILEY(model, "f6p_c", Universal, debug=True)
+ toc = time()
+ print "%.2f sec for smiley" % (toc - tic)
diff --git a/cobra/oven/aliebrahim/gapAnalysis_MILP_figure.svg b/cobra/oven/aliebrahim/gapAnalysis_MILP_figure.svg
new file mode 100644
index 0000000..026799a
--- /dev/null
+++ b/cobra/oven/aliebrahim/gapAnalysis_MILP_figure.svg
@@ -0,0 +1,103 @@
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diff --git a/cobra/oven/aliebrahim/keggIO.py b/cobra/oven/aliebrahim/keggIO.py
new file mode 100644
index 0000000..1607d9c
--- /dev/null
+++ b/cobra/oven/aliebrahim/keggIO.py
@@ -0,0 +1,163 @@
+import csv
+import re
+import copy
+from os.path import join, abspath, split
+
+import cobra
+
+# the default file locations
+kegg_directory = join(split(abspath(__file__))[0], "kegg_files")
+keggdictpath_default = join(kegg_directory, "kegg_dict.csv")
+reactionlst_default = join(kegg_directory, "reaction.lst")
+blacklistpath_default = join(kegg_directory, "kegg_blacklist.csv")
+
+
+def _intify(string):
+ """returns integer representation of the str
+ If str is a single letter, it will return 1"""
+ if string.isdigit():
+ return int(string)
+ # if the expression contains n, the default value is 2
+ n = 2
+ if string == "2n":
+ return 2 * n
+ try:
+ return eval(string)
+ except:
+ raise ValueError(string)
+
+
+def _parse_split_array(str_array):
+ """takes in an array of strings, each of which is either
+ - a compound OR
+ - a number followed by a compound
+ returns [array_of_metabolites, corresponding_coefficient]"""
+ metabolites = []
+ coefficients = []
+ for string in str_array:
+ string = string.strip()
+ if string[0].isupper(): # starts with an uppercase letter
+ # there is no number associated, so it should be 1
+ metabolites.append(string)
+ coefficients.append(1)
+ else:
+ the_coefficient, the_metabolite = string.split()
+ metabolites.append(the_metabolite)
+ coefficients.append(_intify(the_coefficient))
+ return [metabolites, coefficients]
+
+
+def import_kegg_reactions(compartment="c", reactionlstpath=None,
+ keggdictpath=None, blacklistpath=None):
+ """reads in kegg reactions from the three given files
+ compartment: the compartment to which each reaction will be added
+
+ If no file is specified for any of these, a default file will be used:
+ reactionlstpath: path to path of kegg reactions
+ the format should be
+ reactionid: Met1 + 2 Met2 <=> Met3 + 2 Met4
+
+ keggdictpath: The path to a csv file translating between kegg and cobra
+ metabolite ID's, where the first column contains the kegg ID, and the
+ second contains cobra id
+
+ blacklistpath: path to a file listing the blacklisted reactions, with
+ one per line
+
+ returns: cobra model with all of the included reactions
+ """
+
+ if reactionlstpath is None:
+ reactionlstpath = reactionlst_default
+ if keggdictpath is None:
+ keggdictpath = keggdictpath_default
+ if blacklistpath is None:
+ blacklistpath = blacklistpath_default
+
+ # read in kegg dictionary to translate between kegg and cobra id's
+ keggdictfile = open(keggdictpath, "r")
+ keggdictcsv = csv.reader(keggdictfile)
+ keggdict = {}
+ for line in keggdictcsv:
+ keggdict[line[1]] = line[0]
+ keggdictfile.close()
+ # read in the kegg blacklist
+ keggblacklistfile = open(blacklistpath, "r")
+ keggblacklistcsv = csv.reader(keggblacklistfile)
+ keggblacklist = []
+ for line in keggblacklistcsv:
+ keggblacklist.append(line[0])
+ keggblacklistfile.close()
+
+ # parse the file of kegg reactions
+ keggfile = open(reactionlstpath, "r")
+ # regular expressions to split strings
+ colon_sep = re.compile(":").split
+ arrow_sep = re.compile("<=>").split
+ plus_sep = re.compile(" \+ ").split
+ keggreactions = []
+ cobra_reactions = []
+ used_metabolites = {}
+ for line in keggfile:
+ [id, reactionstr] = colon_sep(line, maxsplit=1)
+ # remove whitespace
+ id = id.strip()
+ # if the id is in the blacklist, no need to proceed
+ if id in keggblacklist:
+ continue
+ # split into reactants and products
+ reactants_str, products_str = arrow_sep(reactionstr, maxsplit=1)
+ # break up reactant and product strings into arrays of
+ # metabolites and coefficients
+ reactant_metabolites, reactant_coefficients = \
+ _parse_split_array(plus_sep(reactants_str))
+ product_metabolites, product_coefficients = \
+ _parse_split_array(plus_sep(products_str))
+ # reactant coefficients all need to be multiplied by -1
+ for i, coeff in enumerate(reactant_coefficients):
+ reactant_coefficients[i] = coeff * -1
+ # make one array for all compoenents
+ kegg_metabolites = reactant_metabolites
+ coefficients = reactant_coefficients
+ kegg_metabolites.extend(product_metabolites)
+ coefficients.extend(product_coefficients)
+ # translate the metabolites from kegg to cobra
+ metabolites = []
+ try:
+ for the_kegg_metabolite in kegg_metabolites:
+ metabolites.append(keggdict[the_kegg_metabolite])
+ # if one of the metabolites is not found, skip to the next line
+ except KeyError:
+ continue
+
+ # make a Kegg reaction
+ reaction = cobra.Reaction(id)
+ metabolite_dict = {} # dict of {metabolite : coefficient}
+ for i, the_metabolite in enumerate(metabolites):
+ metabolite_id = the_metabolite + "_" + compartment
+ # if the metabolite already exists
+ if metabolite_id in used_metabolites:
+ used_metabolites[metabolite_id] = coefficients[i]
+ else:
+ # use a new metabolite
+ new_metabolite = cobra.Metabolite(metabolite_id)
+ used_metabolites[metabolite_id] = new_metabolite
+ metabolite_dict[cobra.Metabolite(metabolite_id)] = \
+ coefficients[i]
+ reaction.add_metabolites(metabolite_dict)
+ reaction.notes["temporary_gapfilling_type"] = "Universal"
+ # because the model will be converted to irreversible
+ reaction.lower_bound = -1 * reaction.upper_bound
+ cobra_reactions.append(reaction)
+ keggfile.close()
+ # add all of the reactions to a cobra model
+ Universal = cobra.Model("Kegg_Universal_Reactions")
+ Universal.add_reactions(cobra_reactions)
+ return Universal
+if __name__ == "__main__":
+ from time import time
+ start_time = time()
+ test_import = import_kegg_reactions()
+ duration = time() - start_time
+ print "imported %d reactions in %.2f sec" % \
+ (len(test_import.reactions), duration)
diff --git a/cobra/oven/aliebrahim/simphenyIO.py b/cobra/oven/aliebrahim/simphenyIO.py
new file mode 100644
index 0000000..2759be7
--- /dev/null
+++ b/cobra/oven/aliebrahim/simphenyIO.py
@@ -0,0 +1,184 @@
+from os.path import isfile
+import csv
+import re
+from warnings import warn
+
+import cobra
+
+
+def export_flux_distribution(model, filepath):
+ """Export flux distribution to import into Simpheny.
+
+ Parameters
+ ----------
+ model : cobra.Model
+ filepath: str
+
+ """
+ from simphenyMapping import mapping
+ outfile = open(filepath, "w")
+ outcsv = csv.writer(outfile, delimiter="\t", lineterminator="\n")
+ outcsv.writerow(["Reaction Number", "Flux Value",
+ "Lower Bound", "Upper Bound"])
+ for reaction_name, reaction_flux in model.solution.x_dict.iteritems():
+ reaction = model.reactions.get_by_id(reaction_name)
+ try:
+ outcsv.writerow([mapping[reaction_name], reaction_flux,
+ reaction.lower_bound, reaction.upper_bound])
+ except KeyError, e:
+ print "Simpheny id number not found for", e
+ outfile.close()
+
+
+def _header_count(filename):
+ """count the number of header lines in a file
+ The header is defined as over when a line is found which begins
+ with a number"""
+ file = open(filename, "r")
+ for i, line in enumerate(file):
+ if line[0].isdigit():
+ file.close()
+ return i
+ file.close()
+ return False
+
+
+def _open_and_skip_header(filename):
+ """returns a csv file with the header skipped"""
+ count = _header_count(filename)
+ if not count:
+ raise (IOError, "%s corrupted" % filename)
+ file = open(filename, "r")
+ for i in range(count):
+ file.readline()
+ return csv.reader(file, delimiter="\t")
+
+
+def _find_metabolites_by_base(base, metabolites):
+ """search for all metabolites in the list which match the base name.
+ For example, "h2o" will identify both "h2o(c)" and "h2o(e)" """
+ search = re.compile(base + "\([a-z]\)")
+ found = []
+ for the_metabolite in metabolites:
+ if search.match(the_metabolite.id) is not None:
+ found.append(the_metabolite)
+ return found
+
+
+def read_simpheny(baseName, min_lower_bound=-1000, max_upper_bound=1000,
+ maximize_info=True):
+ r"""Imports files exported from a SimPheny simulation as a cobra model.
+
+ .. warning:: Use with caution. This is a legacy import function, and
+ errors have been observed in the converted gene-reaction rules.
+
+ Parameters
+ ----------
+ baseName : str
+ The filepath to the exported SimPheny files without any of the
+ extensions. On Windows, it helps if baseName is a raw string
+ (i.e. r"Path\\to\\files")
+ min_lower_bound, max_upper_bound : float or int, optional
+ The bounds on the lower and upper bounds of fluxes in model.
+ maximize_info : bool, optional
+ An optional boolean keyword argument. If True, then an attempt
+ will be made to parse the gpr and metabolite info files, and the
+ function will take a little bit longer.
+
+ Returns
+ -------
+ model : cobra.Model
+ the imported simpheny model
+
+ """
+
+ # check to make sure the files can be read
+ if not(isfile(baseName + ".met")
+ and isfile(baseName + ".rxn")
+ and isfile(baseName + ".sto")):
+ # try again with modifying the baseName
+ baseName = baseName.encode("string-escape")
+ if not(isfile(baseName + ".met")
+ and isfile(baseName + ".rxn")
+ and isfile(baseName + ".sto")):
+ raise (IOError, "Input file(s) not found")
+ model = cobra.Model("SimPheny import from " + baseName)
+ # read in metabolite file
+ metfile = _open_and_skip_header(baseName + ".met")
+ metabolites = []
+ for line in metfile:
+ if len(line) == 0:
+ break
+ metabolite = cobra.Metabolite(id=line[1], name=line[2],
+ compartment=line[3])
+ if maximize_info:
+ compartment_search = re.findall("\([a-z]\)$", metabolite.id)
+ if compartment_search != []:
+ metabolite.compartment = compartment_search[0][1]
+ model.compartments[metabolite.compartment] = line[3]
+ metabolites.append(metabolite)
+ model.add_metabolites(metabolites)
+ # scalefunc will limit the maximum and minumum fluxes
+ scalefunc = lambda x: max(min(max_upper_bound, x), min_lower_bound)
+ # read in reaction file
+ reaction_file = _open_and_skip_header(baseName + ".rxn")
+ reactions = []
+ for line in reaction_file:
+ if len(line) == 0:
+ break
+ the_reaction = cobra.Reaction()
+ the_reaction.id = line[1]
+ the_reaction.name = line[2]
+ if line[3].lower() == "reversible":
+ the_reaction.reversibility = 1
+ elif line[3].lower() == "irreversible":
+ the_reaction.reversibility = 0
+ the_reaction.lower_bound = scalefunc(float(line[4]))
+ the_reaction.upper_bound = scalefunc(float(line[5]))
+ the_reaction.objective_coefficient = float(line[6])
+ reactions.append(the_reaction)
+ model.add_reactions(reactions)
+ # read in S matrix
+ Sfile = _open_and_skip_header(baseName + ".sto")
+ S = []
+ for i, line in enumerate(Sfile):
+ if len(line) == 0:
+ break
+ the_metabolite = metabolites[i]
+ for j, ns in enumerate(line):
+ n = float(ns)
+ if n != 0:
+ model.reactions[j].add_metabolites({the_metabolite: n})
+ # attempt to read in more data
+ infofilepath = baseName + "_cmpd.txt"
+ if maximize_info and isfile(infofilepath):
+ infofile = open(infofilepath, "r")
+ infofile.readline() # skip the header
+ infocsv = csv.reader(infofile)
+ for row in infocsv:
+ found = _find_metabolites_by_base(row[0], model.metabolites)
+ for found_metabolite in found:
+ found_metabolite.formula = row[2]
+ found_metabolite.parse_composition()
+ found_metabolite.charge = row[4]
+ found_metabolite.notes = {}
+ found_metabolite.notes["KEGG_id"] = row[8]
+ found_metabolite.notes["CAS"] = row[5]
+ found_metaboltie.notes["review status"] = row[3]
+ infofile.close()
+ gpr_filepath = baseName + "_gpr.txt"
+ if maximize_info and isfile(gpr_filepath):
+ warn("SimPheny export files may have errors in the gpr.")
+ # Using this may be risky
+ gpr_file = open(gpr_filepath, "r")
+ gpr_file.readline() # skip the header
+ gpr_csv = csv.reader(gpr_file)
+ for row in gpr_csv:
+ the_reaction = model.reactions[model.reactions.index(row[0])]
+ the_reaction.gene_reaction_rule = row[5]
+ the_reaction.parse_gene_association()
+ gpr_file.close()
+ # model.update()
+ return model
+
+
diff --git a/cobra/oven/danielhyduke/__init__.py b/cobra/oven/danielhyduke/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/cobra/oven/danielhyduke/construction/balance.py b/cobra/oven/danielhyduke/construction/balance.py
new file mode 100644
index 0000000..7148187
--- /dev/null
+++ b/cobra/oven/danielhyduke/construction/balance.py
@@ -0,0 +1,329 @@
+from time import time
+from numpy import zeros, matrix, array
+from scipy.sparse import lil_matrix, dok_matrix
+from cPickle import load, dump
+from collections import defaultdict
+from warnings import warn
+def create_element_matrix(cobra_model, db_cursor=None, me_matrix=False,
+ cas='sympy'):
+ """Constructs a matrix of elements x metabolites for the metabolites
+ in cobra_model. If elemental compositions are not available for all
+ metabolites then a symbolic matrix is returned with symbols representing
+ the unknown compositions.
+
+ cobra_model: A cobra.Model object.
+
+ db_cursor: Internal use only.
+
+ me_matrix: False. Internal use only.
+
+ cas: 'sympy' or 'ginac'. Specifies the computer algebra system to use.
+ 'ginac' is the more powerful solver however it is accessed through
+ swiginac which isn't the easiest thing to install.
+
+ """
+ if cas.lower() == 'sympy':
+ from sympy import solve, Matrix, Symbol, Add
+ from sympy.core.numbers import Zero, Real
+ elif cas.lower() == 'ginac':
+ #Symbolic.Matrix might be slow to index so we might use
+ #the swiginac matrix or numpy.matrix instead
+ from Symbolic import Symbol, Matrix, Expr
+
+
+ elements = ('c', 'h', 'o', 'n', 'p', 's', 'z') #z is for generics
+ element_dict = dict(zip(elements, range(len(elements))))
+ element_matrix = dok_matrix((len(elements), len(cobra_model.metabolites)))
+ if db_cursor and me_matrix:
+ #Used for current incarnation of ME matrix.
+ known_compositions = set()
+ #1. Start off by getting known molecular compositions
+ db_cursor.execute('Select Id, (c, h, o, n, p, s) from metabolite')
+ metabolite_compositions = dict(db_cursor.fetchall())
+ for the_metabolite, the_composition in metabolite_compositions.items():
+ if the_metabolite in cobra_model.metabolites:
+ known_compositions.add(the_metabolite)
+ the_column = cobra_model.metabolites.index(the_metabolite)
+ the_composition = eval(the_composition)
+ element_matrix.update(dict([((i, the_column), the_composition[i])
+ for i in range(len(the_composition))]))
+
+ #2. Identify the reactions that produce generics and set the stoichiometry
+ #to zero to deal with mass imbalances.
+ #
+ #This isn't a problem any more as the dummy reactions are not added
+ #until after balancing.
+ generic_production_reactions = dict([(x, cobra_model.reactions.index(x))
+ for x in cobra_model.reactions\
+ if x.startswith('generic_rename')])
+ #collect all of the generic_X metabolite Ids and then set masses to 1 Z
+ db_cursor.execute('SELECT FU_ID_Generic from Generic_FU')
+ generic_metabolites = [x[0] for x in db_cursor.fetchall()]
+
+ known_compositions.update(generic_metabolites)
+ element_matrix.update(dict([((elements.index('z'),
+ cobra_model.metabolites.index(x)), 1.)
+ for x in generic_metabolites]))
+ #Remove the generic production reactions
+ for column_index in generic_production_reactions.values():
+ the_column = cobra_model._S[:, column_index]
+ for row_index in the_column.nonzero()[0]:
+ the_column[row_index, 0] = 0
+
+ #3. Remove demand reactions.
+ #This isn't a problem any more as the demand reactions are not added
+ #until after balancing.
+ demand_indices = [cobra_model.reactions.index(x)
+ for x in cobra_model.reactions if 'demand' in x]
+ for column_index in demand_indices:
+ the_column = cobra_model._S[:, column_index]
+ for row_index in the_column.nonzero()[0]:
+ the_column[row_index, 0] = 0
+ #4. Calculate molecular formula for transcripts and peptides. This isn't
+ #necessary, but will probably make solving the problem easier.
+
+ #known_compositions.update(transcripts and peptides)
+
+ #5. For all metabolites not in known compositions. It will be
+ #necessary to add a symbolic value to the matrix for each element
+ #excluding z, i.e. the_metabolite_(c, h, o, n, p, s, z).
+ metabolite_dict = dict(zip(cobra_model.metabolites,
+ range(len(cobra_model.metabolites))))
+ [metabolite_dict.pop(k)
+ for k in known_compositions]
+ #If there are any metabolites without compositions build a symbolic matrix
+ if len(metabolite_dict) > 0:
+ #Build the symbolic elemental composition matrix
+ if cas.lower() == 'sympy':
+ element_matrix = Matrix(element_matrix.todense())
+ elif cas.lower() == 'ginac':
+ element_matrix = Matrix(element_matrix.todense().tolist())
+ #Now populate with symbols for the_metabolites not in known_compositions
+ for the_metabolite, metabolite_index in metabolite_dict.items():
+ for the_element, element_index in element_dict.items():
+ element_matrix[element_index,
+ metabolite_index] = Symbol('%s_%s'%(the_metabolite,
+ the_element))
+ else:
+ print 'Not yet implemented for anything other than ME'
+
+ return({'elements': element_dict,
+ 'matrix': element_matrix})
+
+
+
+
+
+def create_balancing_problem(cobra_model, element_vector,
+ system_type='equations',
+ cas='sympy', print_unbalanced=False):
+ """Create a symbolic linear algebra problem to solve for unknown metabolite
+ compositions in cobra_model.
+
+ element_vector x cobra_model._S.T = 0
+
+ Note: The problems are typically too big to balance for all elements
+ at once, thus the vector should only deal with one of the chemical elements.
+
+ cobra_model: A cobra.Model object
+
+ element_vector: A sympy.Matrix with the element counts corresponding to each
+ metabolite in cobra_model.reactions.
+
+ return_type: 'equations' or 'matrix'. Constructing equations is faster, but
+ for specific operations a matrix may be desired. If 'matrix' then the
+ unbalanced reactions are not currently returned.
+
+ cas: 'sympy' or 'ginac'. Specifies the computer algebra system to use.
+ 'ginac' is the more powerful solver however it is accessed through
+ swiginac which isn't the easiest thing to install.
+
+ print_unbalanced: Boolean. Indicates whether to print the unbalanced reactions.
+
+ """
+ if cas.lower() == 'sympy':
+ from sympy import solve, Matrix, Symbol, Add
+ from sympy.core.numbers import Zero, Real
+ elif cas.lower() == 'ginac':
+ from Symbolic import Symbol, Matrix, Expr
+ from swiginac import lsolve, matrix, symbol
+ from swiginac import add as Add
+ # If multiple solutions are available, then we'll have to make
+ # sure that the sum of each column in element_matrix is >= 1
+ #
+ #Now deal with multiplying the two matrices.
+ unbalanced_dict = {}
+ variable_set = set()
+ if system_type == 'equations':
+ s_matrix_transpose = cobra_model._S.T #Row access is faster for sparse arrays
+ #Multiplying symbolic_element_matrix by s_matrix is not an option, due to
+ #memory and speed issues.
+ the_system = []
+
+
+ for i in range(s_matrix_transpose.shape[0]):
+ the_column = s_matrix_transpose[i, :]
+ #This is faster than multiplying symbolic_element_matrix by
+ #the_column by about 3-fold
+ the_indices = the_column.nonzero()[1]
+ the_factors = [float(the_column[0, x])
+ for x in the_indices]
+ if cas.lower() == 'sympy':
+ the_variables = [element_vector[0,j]
+ for j in the_indices]
+ elif cas.lower() == 'ginac':
+ the_variables = [element_vector[j]
+ for j in the_indices]
+
+ the_equation = reduce(lambda x,y: x + y,
+ map(lambda x, y: x*y, the_factors,
+ the_variables))
+ if cas.lower() == 'sympy':
+ #this can probably be streamlined for the different CASes
+ if isinstance(the_equation, Add):
+ the_system.append(the_equation)
+ the_atoms = list(the_equation.atoms())
+ [variable_set.add(x) for x in the_atoms
+ if isinstance(x, Symbol)]
+ elif not isinstance(the_equation, Zero) and \
+ the_equation != 0:
+ unbalanced_dict.update({cobra_model.reactions[i]:
+ the_equation})
+ if print_unbalanced:
+ print 'Unbalanced Reaction ' +\
+ '%s: Element %s is %s'%(cobra_model.reactions[i],
+ the_element,
+ repr(the_equation))
+ elif cas.lower() == 'ginac':
+ if isinstance(the_equation.data, Add):
+ the_system.append(the_equation)
+ [variable_set.add(x) for x in the_variables
+ if isinstance(x, Expr)]
+ elif the_equation.eval() != 0:
+ unbalanced_dict.update({cobra_model.reactions[i]:
+ the_equation})
+ if print_unbalanced:
+ print 'Unbalanced Reaction ' +\
+ '%s: Element %s is %s'%(cobra_model.reactions[i],
+ the_element,
+ repr(the_equation))
+
+ else:
+ print 'Warning this may take 10 Gb RAM and an hour'
+ the_system = element_vector * cobra_model._S.todense()
+
+ return({'variables': variable_set,
+ 'equations': the_system,
+ 'unbalanced': unbalanced_dict})
+
+
+def solve_balance_problem(the_equations, the_variables):
+ """Solves a systems of linear equations for the variables. Using
+ sympy.
+
+ the_equations: A list of sympy.Add equations.
+
+ the_variables: A list of sympy variables (Symbols, Zero, Real, One, ...)
+
+ """
+ if cas.lower() == 'sympy':
+ from sympy import solve
+ elif cas.lower() == 'ginac':
+ from swiginac import lsolve as solve
+ the_solution = solve(the_equations, the_variables)
+ return the_solution
+
+
+if __name__ == '__main__':
+ from sys import argv
+ from os.path import lexists
+ from time import time
+ ## if not len(argv) == 3:
+ ## print 'Need to call the script with the model file name and element'
+ ## print 'e.g. python balance.py cobra_model.pickle c'
+ ## model_file = argv[1]
+ ## the_element = argv[2]
+ cas='ginac'
+ me_matrix = True
+ the_element = 'c'
+ model_file = '/Users/danie/e/builds/cobra_model.pickle'
+ system_type = 'equations'
+ element_file = '%s.elements.%s'%(model_file, cas)
+ problem_file = '%s.%s_problem.%s'%(model_file,
+ the_element,
+ cas)
+ solution_file = '%s.%s_solution.%s'%(model_file,
+ the_element,
+ cas)
+
+
+ with open(model_file) as in_file:
+ cobra_model = load(in_file)
+
+ if lexists(element_file) and not lexists(problem_file):
+ #Only load the element file if a problem file does not
+ #already exist to reduce memory usage.
+ with open(element_file) as in_file:
+ the_elements = load(in_file)
+ elif not lexists(problem_file):
+ #Only build the elements if the problem file doesn't exist
+ import pgdb as PgSQL
+ start_time = time()
+ db_con = PgSQL.connect(database='cobra')
+ db_cursor = db_con.cursor()
+ the_genus = 'thermotoga'
+ db_cursor.execute('Set search_path to ' + the_genus)
+ print 'Building element matrix'
+ start_time = time()
+ the_elements = create_element_matrix(cobra_model, db_cursor=db_cursor,
+ me_matrix=True, cas=cas)
+ if cas.lower() != 'ginac':
+ #Can't pickle PySwigObjects
+ with open(element_file, 'w') as out_file:
+ dump(the_elements, out_file)
+ print 'Element matrix %s created in %f minutes'%(element_file,
+ (time()-start_time)/60)
+ element_index = the_elements['elements'][the_element]
+ element_vector = the_elements['matrix'][element_index, :]
+ print 'This problem is symbolic and may take some time to solve'
+ if not lexists(problem_file):
+ print 'Constructing the problem for element %s. Restart to solve the problem'%the_element
+ print 'This process can take 1-100 minutes depending on model size'
+ start_time = time()
+
+ the_problem = create_balancing_problem(cobra_model,
+ element_vector,
+ system_type=system_type,
+ cas=cas,
+ print_unbalanced=True)
+ if cas.lower() != 'ginac':
+ print 'Rerun the script to solve the problem'
+ with open(problem_file, 'w') as out_file:
+ dump(the_problem, out_file)
+ print 'Problem file %s created in %1.2f minutes.'%(problem_file,
+ (time() - start_time) / 60)
+
+ ## else:
+ ## with open(problem_file) as in_file:
+ ## the_problem = load(in_file)
+
+ ## print 'Solving the problem %s'%problem_file
+ ## print 'This may take some time'
+ ## start_time = time()
+ ## the_solution = solve_balance_problem(the_problem['equations'],
+ ## the_problem['variables'])
+
+ ## with open(solution_file, 'w') as out_file:
+ ## dump(the_solution, out_file)
+ ## print 'Problem solved. %s created in %1.2f minutes.'%(solution_file,
+ ## (time() - start_time) / 60)
+
+#solve nonsymbolic problems
+ ## element_matrix = the_elements['matrix'].tocsr()
+ ## elements = the_elements['elements']
+ ## reaction_matrix = cobra_model._S.T.tocsr()
+ ## print 'Not a symbolic problem'
+ ## the_balance = element_matrix * reaction_matrix
+ ## the_balance = the_balance.tolil()
+ ## for e, i in elements:
+ ## print '%s generated by system: %f'%(e, the_balance[i,:].sum())
diff --git a/cobra/oven/danielhyduke/construction/omics_guided.py b/cobra/oven/danielhyduke/construction/omics_guided.py
new file mode 100644
index 0000000..c6d4ca1
--- /dev/null
+++ b/cobra/oven/danielhyduke/construction/omics_guided.py
@@ -0,0 +1,18 @@
+#cobra.manipulation.omics_guided.py
+#The functions for omics_guided tailoring will be kept here.
+def tailor_model(cobra_model, the_method='GIMME', data_type='mRNA', data_kind='log_ratio',
+ solver='glpk', the_problem='return' ):
+ """
+
+ the_method: Type of tailoring to employ. GIMME or shlomi.
+ data_type: 'mRNA', 'protein', 'metabolite', ...
+ data_kind: 'p-value','log_ratio': assumed vs control, 'intensity'
+ solver: 'glpk' or 'gurobi'
+
+
+ """
+ cobra_model = cobra_model.copy()
+ print 'Under development'
+ return
+
+#function [reactionActivity,reactionActivityIrrev,model2gimme,gimmeSolution] = solveGimme(model,objectiveCol,expressionCol,cutoff)
diff --git a/cobra/oven/danielhyduke/general/__init__.py b/cobra/oven/danielhyduke/general/__init__.py
new file mode 100644
index 0000000..c82945a
--- /dev/null
+++ b/cobra/oven/danielhyduke/general/__init__.py
@@ -0,0 +1 @@
+from arrays import *
diff --git a/cobra/oven/danielhyduke/general/arrays.py b/cobra/oven/danielhyduke/general/arrays.py
new file mode 100644
index 0000000..7dc6274
--- /dev/null
+++ b/cobra/oven/danielhyduke/general/arrays.py
@@ -0,0 +1,32 @@
+from numpy import ndarray
+class ResultsArray(ndarray):
+ """A primitive wrapper to allow accessing numpy.ndarrays via
+ named rows and columns. The ResultsArray.row_names and
+ column_names must be assigned after the object is created.
+
+ The names will not carry over for any operations.
+
+ TODO: Finish the implementation
+
+ """
+ def __init__(self, shape, row_names=None, column_names=None):
+ ndarray.__init__(shape)
+ if row_names:
+ self.row_names = row_names
+ else:
+ self.row_names = range(shape[0])
+ if column_names:
+ self.column_names = column_names
+ else:
+ column_names = range(shape[1])
+ def get(self, row_name=None, column_name=None):
+ if row_name:
+ the_row = self.row_names.index(row_name)
+ if column_name:
+ the_column = self.column_names.index(column_name)
+ if row_name and column_name:
+ return self[the_row, the_column]
+ if not row_name:
+ return self[:, the_column]
+ if not column_name:
+ return self[the_row, :]
diff --git a/cobra/oven/danielhyduke/jython/README b/cobra/oven/danielhyduke/jython/README
new file mode 100644
index 0000000..d4f214f
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/README
@@ -0,0 +1 @@
+Section dedicated to creating scipy/numpy for jython interface using cern.colt. This will not be ready any time soon.
diff --git a/cobra/oven/danielhyduke/jython/__init__.py b/cobra/oven/danielhyduke/jython/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/cobra/oven/danielhyduke/jython/numpy/README b/cobra/oven/danielhyduke/jython/numpy/README
new file mode 100644
index 0000000..6d358ed
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/README
@@ -0,0 +1 @@
+In the future, we will be working on a numpy for java implementation that uses cern.colt matrices as the backend and provides a java interface that mirrors numpy.
diff --git a/cobra/oven/danielhyduke/jython/numpy/__init__.py b/cobra/oven/danielhyduke/jython/numpy/__init__.py
new file mode 100644
index 0000000..5caa494
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/__init__.py
@@ -0,0 +1,5 @@
+from cern.colt.matrix.impl import DenseDoubleMatrix2D as ndarray
+from cern.colt.matrix.impl import SparseDoubleMatrix2D as sdarray
+from core import *
+#import core
+#from core import *
diff --git a/cobra/oven/danielhyduke/jython/numpy/core/Matrix.py b/cobra/oven/danielhyduke/jython/numpy/core/Matrix.py
new file mode 100644
index 0000000..fc70437
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/core/Matrix.py
@@ -0,0 +1,211 @@
+#cobra.numjy.Matrix.py
+#Basic matrix class that is going to be used to mimic numpy.ndarray
+#capabilities.
+#
+#Derived from Simon Galbraith's ncajava Matrix.py file
+import java, javax, jarray
+from copy import deepcopy
+from cern.colt.matrix import DoubleMatrix2D
+from cern.colt.matrix.DoubleFactory2D import dense,sparse;
+from cern.colt.matrix.impl import DenseDoubleMatrix2D as ndarray
+from cern.colt.matrix.impl import SparseDoubleMatrix2D as sdarray
+from cern.colt.matrix.linalg import Algebra;
+from org.python.core.exceptions import ValueError as PyValueException;
+from org.python.core import PyString,PySlice,PySequence,PyList;
+
+class Matrix(javax.swing.table.AbstractTableModel):
+ _M = None;
+ _name = 'data matrix'
+ varname = ''
+ column_names = []
+ row_names = []
+
+ def __init__(self,M=None,N=None,v=None,sparse=None):
+
+ """
+ M is the number of rows
+ N is the number of columns
+ v is the default value
+ """
+ if isinstance(M,DoubleMatrix2D):
+ self._M = M.copy();
+ elif (isinstance(M,int) and isinstance(N,int)):
+ if sparse:
+ F = sparse
+ else:
+ F = dense;
+ if v is None:
+ self._M = F.make(M,N,0);
+ elif isinstance(v,int):
+ self._M = F.make(M,N,v);
+ elif isinstance(v,PyList):
+ self._M = F.make(jarray.array(v,'d'),1)
+ elif isinstance(v,PyString):
+ self._M = F.random(M,N);
+ else:
+ if sparse:
+ self._M = SparseDoubleMatrix2D(v)
+ else:
+ self._M = ndarray(v)
+ self.shape = (self._M.rows(),self._M.columns())
+
+
+ def __copy__(self):
+ r = new.instance(self.__class__, self.__dict__.copy() )
+ r._M = self._M.copy();
+ print "in copy"
+ return r
+
+ def __sub__(A,B):
+
+ [ar,ac]=size(A);
+ C = Matrix(ar,ac,0);
+ for i in range(1,ar):
+ for j in range(1,ac):
+ C[i,j]=A[i,j]-B[i,j]
+ return C;
+
+ def __mul__(A,B):
+
+ # need to check types and multiple based on them..
+ try:
+ F = Algebra();
+ C=(F.mult(A._M,B._M));
+ except:
+ raise PyValueException, "Inner dimension mismatch in matrix multiply.";
+ return None;
+ return Matrix(C)
+ def __div__(A,B):
+ #print size(A)
+
+ try:
+ F = Algebra();
+ R = F.solve(A._M,B._M);
+ return R;
+ except (java.lang.IllegalArgumentException) , e :
+ # check the error class types according to the matrix class so we can intelligently report the error.
+ print e.getMessage();
+ return None;
+
+
+ def __repr__(self):
+ return self._M.toString();
+
+ def __str__(self):
+ return self._M.toString();
+
+ def __sz__(self):
+ if isinstance(self,Matrix):
+ x=self._M.rows();
+ y=self._M.columns();
+ return (x,y);
+ else:
+ raise PyValueException, "Argument must be a matrix.";
+
+ def __setitem__(self,idx,v):
+
+ if v is None:
+ print idx
+ raise PyValueException, "v is none"
+
+ if isinstance(v,float):
+ self._M.set(idx[0],idx[1],v);
+ return;
+
+ Y=idx[1];
+ X=idx[0];
+
+ if isinstance(X,PyList):
+ X=map(lambda x: x, X)
+ elif isinstance(X,PySlice):
+ if X.start == None:
+ X=range(0,self._M.rows())
+ elif isinstance(X,int):
+ X=[X];
+
+ if isinstance(Y,PyList):
+ Y=map(lambda x: x,Y);
+ elif isinstance(Y,PySlice):
+ if Y.start == None:
+ Y=range(0,self._M.cols())
+ elif isinstance(Y,int):
+ Y=[Y];
+
+ order=0;
+ if len(X)>len(Y):
+ order=1;
+
+ #print "the order is " , order
+ if order==0:
+ y=1
+ for q in Y:
+ x=1
+ for z in X:
+ # print z,q,x,y,v
+ self._M.set(z,q,v[x,y]);
+ x+=1;
+ y+=1;
+ else:
+ x=1
+ for z in X:
+ y=1;
+ for q in Y:
+ self._M.set(z,q,v[x,y]);
+ y+=1;
+ x+=1;
+
+
+ def __getslice__(self, i, j):
+
+ if i.start != None:
+ x=range(i.start,i.stop);
+ else:
+ x=range(0,self._M.rows())
+ if j.start !=None:
+ y=range(j.start,j.stop)
+ else:
+ y=range(0,self._M.columns())
+
+ return Matrix(self._M.viewSelection(x,y));
+
+
+ def __getitem__(self,idx):
+ x=idx[0];
+ y=idx[1];
+ if x<0 or y<0:
+ raise PyValueException, "Index must be positive number";
+ # this will fail on pyslice
+
+ if isinstance(x,PySlice):
+ if x.start != None:
+ x=range(x.start,x.stop);
+ else:
+ x=range(0,self._M.rows())
+ elif isinstance(x,int):
+ x=x;
+ x=[x];
+ elif isinstance(x,PyList):
+ x=map(lambda x: x, x)
+
+ if isinstance(y,int):
+ y=y;
+ y=[y];
+ elif isinstance(y,PySlice):
+ if y.start != None:
+ y=range(y.start,y.stop);
+ else:
+ y=range(0,self._M.columns())
+ elif isinstance(y,PySlice):
+ if y.start !=None:
+ y=range(y.start,y.stop)
+ else:
+ y=range(0,self._M.columns())
+ elif isinstance(y,PyList):
+ y=map(lambda x: x, y)
+
+
+ if len(x)<2 and len(y)<2:
+ r = self._M.getQuick(x[0],y[0]);
+ return float(r) # this is a specific element
+ else:
+ return Matrix(self._M.viewSelection(x,y));
diff --git a/cobra/oven/danielhyduke/jython/numpy/core/__init__.py b/cobra/oven/danielhyduke/jython/numpy/core/__init__.py
new file mode 100644
index 0000000..347a592
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/core/__init__.py
@@ -0,0 +1,3 @@
+from multiarray import *
+from core import *
+#from numeric import *
diff --git a/cobra/oven/danielhyduke/jython/numpy/core/core.py b/cobra/oven/danielhyduke/jython/numpy/core/core.py
new file mode 100755
index 0000000..fb60394
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/core/core.py
@@ -0,0 +1,582 @@
+# (c) Simon J Galbraith 2007.
+# Daniel Hyduke 2010
+import java, jarray
+from copy import deepcopy
+from cern.colt.list import IntArrayList, DoubleArrayList
+from cern.colt.matrix import DoubleFactory2D
+from cern.colt.matrix.impl import DenseDoubleMatrix2D
+from cern.colt.matrix.impl import SparseDoubleMatrix2D
+from cern.colt.matrix.linalg import Algebra, EigenvalueDecomposition, LUDecomposition;
+from org.python.core.exceptions import ValueError as PyValueException;
+from cern.colt.matrix.doublealgo.Statistic import covariance, correlation;
+from cern.jet.math.Functions import abs as cern_abs
+from multiarray import ndarray, array
+def mean(A):
+ """Calculate the mean of Matrix object A
+
+ """
+ [r,c]=size(A)
+ s=0
+ for j in range(1,c):
+ s = s+A[r,j]
+ return s/c
+
+def sum(A):
+ """Calculate the sum of Matrix object A
+
+ """
+ return A._M.zSum()
+
+
+def norm(A,ntype=None):
+ F = Algebra();
+ if ntype=='fro':
+ r=F.normF(A._M);
+ elif ntype == 2:
+ r=F.norm2(A._M);
+ else:
+ r=F.norm2(A._M);
+ return r;
+
+def rank(A):
+
+ if isinstance(A,ndarray):
+ F = Algebra();
+ r=F.rank(A._M);
+ return int(r);
+ else:
+ raise PyValueException, "Rank function can only be called on matrix objects"
+
+def cond(A):
+ F = Algebra();
+ return F.cond(A._M);
+
+def size(A):
+ return A.__sz__();
+
+def transpose(A):
+ F = Algebra();
+ if isinstance(A,float):
+ return A;
+ else:
+ return ndarray(F.transpose(A._M));
+
+def inverse(A):
+ F = Algebra();
+ x=F.inverse(A._M);
+ return ndarray(x)
+
+
+def eig(A):
+ # check that _M is square
+ try:
+ E = EigenvalueDecomposition(A._M);
+ U = E.getV();
+ eigs = E.getD();
+ except PyValueException, e:
+ print e;
+ raise PyValueException,"Error in eig, check warnings()";
+ return [ndarray(eigs),ndarray(U)];
+
+def solve(A, B):
+ F = Algebra();
+ if isinstance(A, ndarray) and isinstance(B, float):
+ return F.solve(A._M, B);
+ elif isinstance(B, ndarray) and isinstance(A, float):
+ return F.solve(A, B._M);
+ elif isinstance(A,ndarray) and isinstance(B, ndarray):
+ return ndarray(F.solve(A._M, B._M))
+ else:
+ return A / B
+
+def solve_transpose(A, B):
+ F = Algebra();
+ if isinstance(A, ndarray) and isinstance(B, float):
+ return F.solveTranspose(A._M,B);
+ elif isinstance(B, ndarray) and isinstance(A, float):
+ return F.solveTranspose(A, B._M);
+ elif isinstance(A, ndarray) and isinstance(B, ndarray):
+ return ndarray(F.solveTranspose(A._M, B._M));
+ else:
+ return A / B
+
+def solve_LR(A, B):
+ T = A._M.copy()
+ F = LUDecomposition(T);
+ if isinstance(A, ndarray) and isinstance(B, float):
+ return F.solve(B);
+ elif isinstance(A, ndarray) and isinstance(B, ndarray):
+ C = F.solve(B._M);
+ return ndarray(C)
+
+def cov(A):
+ return ndarray(covariance(A._M))
+
+def cor(A): # handle multidimensional matrix case
+ B = cov(A);
+ return ndarray(correlation(B._M))
+
+
+def abs(A):
+ F = cern_abs
+ if isinstance(A,float):
+ return java.lang.Math.abs(A)
+ else:
+ X = A._M.assign(F)
+ return ndarray(X);
+
+def svd(A):
+ X = SingularValueDecomposition(A._M)
+ u = X.getU()
+ v = X.getV()
+ e = X.getS()
+ return [ndarray(u), ndarray(e), ndarray(v)]
+
+#TODO:
+#Make sure all of the functions below are are defined. To know
+#how they should operate, look at the docstring:
+# pydoc numpy.the_function
+#
+# or in ipython:
+# from numpy import *
+# ?the_function
+#
+#
+#TODO: These are the java mappings to the type. If there's any
+#difficulties then check the cern.colt data types
+int32 = int
+int64 = long
+
+def ones(shape, dtype=float, order='C'):
+ """Return a new array of given shape and type, filled with ones.
+
+
+ See Also
+ --------
+ zeros
+
+ Examples
+ --------
+ >>> numjy.ones(5)
+ array([ 1., 1., 1., 1., 1.])
+
+ >>> numjy.ones((5,), dtype=numjy.int)
+ array([1, 1, 1, 1, 1])
+
+ >>> numjy.ones((2, 1))
+ array([[ 1.],
+ [ 1.]])
+
+ >>> s = (2,2)
+ >>> numjy.ones(s)
+ array([[ 1., 1.],
+ [ 1., 1.]])"""
+ return(ndarray(shape[0], shape[1], 1))
+
+def sign(x):
+ """ sign(x[, out])
+
+ Returns an element-wise indication of the sign of a number.
+
+ The `sign` function returns ``-1 if x < 0, 0 if x==0, 1 if x > 0``.
+
+ Parameters
+ ----------
+ x : array_like
+ Input values.
+
+ Returns
+ -------
+ y : ndarray
+ The sign of `x`.
+
+ Examples
+ --------
+ >>> numjy.sign([-5., 4.5])
+ array([-1., 1.])
+ >>> numjy.sign(0)
+ 0
+
+ """
+ def sign_int(a_number):
+ if a_number < 0:
+ return(-1)
+ elif a_number == 0:
+ return(0)
+ else:
+ return(1)
+
+ if hasattr(x, '__iter__' ) or isinstance(x, ndarray):
+ return_value = array([map(sign_int, list(array(x)._M.toArray()))])
+ else:
+ #In the case the input is just a number return the sign of the number.
+ return_value = sign_int(x)
+ return(return_value)
+
+
+def vstack(tup):
+ """ Stack arrays in sequence vertically (row wise).
+
+ Take a sequence of arrays and stack them vertically to make a single
+ array. Rebuild arrays divided by `vsplit`.
+ Parameters
+ ----------
+ tup : sequence of ndarrays
+ Tuple containing arrays to be stacked. The arrays must have the same
+ shape along all but the first axis.
+ Returns
+ -------
+ stacked : ndarray
+ The array formed by stacking the given arrays.
+ See Also
+ --------
+ hstack : Stack arrays in sequence horizontally (column wise).
+ dstack : Stack arrays in sequence depth wise (along third dimension).
+ concatenate : Join a sequence of arrays together.
+ vsplit : Split array into a list of multiple sub-arrays vertically.
+
+
+ Notes
+ -----
+ Equivalent to ``np.concatenate(tup, axis=0)``
+
+ Examples
+ --------
+ >>> a = np.array([1, 2, 3])
+ >>> b = np.array([2, 3, 4])
+ >>> np.vstack((a,b))
+ array([[1, 2, 3],
+ [2, 3, 4]])
+
+ >>> a = np.array([[1], [2], [3]])
+ >>> b = np.array([[2], [3], [4]])
+ >>> np.vstack((a,b))
+ array([[1],
+ [2],
+ [3],
+ [2],
+ [3],
+ [4]])
+
+ """
+ if isinstance(tup[0], sdarray):
+ matrix_factory = DoubleFactory2D.sparse
+ else:
+ #Allow for the case that python lists or tuples are fed to the function
+ tup = map(array, tup)
+ matrix_factory = DoubleFactory2D.dense
+
+ stacked_matrix = tup[0]._M
+ for the_array in tup[1:]:
+ stacked_matrix = matrix_factory.appendRows(stacked_matrix, the_array._M)
+ return(ndarray(stacked_matrix))
+
+
+def hstack(tup):
+ """
+ Stack arrays in sequence horizontally (column wise).
+
+ Take a sequence of arrays and stack them horizontally to make a single array. Rebuild arrays divided by hsplit.
+
+ Parameters:
+ tup : sequence of ndarrays
+ All arrays must have the same shape along all but the second axis.
+ Returns:
+ stacked : ndarray
+ The array formed by stacking the given arrays.
+ See also
+ vstack
+ Stack arrays in sequence vertically (row wise).
+ dstack
+ Stack arrays in sequence depth wise (along third axis).
+ concatenate
+ Join a sequence of arrays together.
+ hsplit
+ Split array along second axis.
+ Notes
+
+ Equivalent to np.concatenate(tup, axis=1)
+
+ Examples
+
+ >>> a = np.array((1,2,3))
+ >>> b = np.array((2,3,4))
+ >>> np.hstack((a,b))
+ array([1, 2, 3, 2, 3, 4])
+ >>> a = np.array([[1],[2],[3]])
+ >>> b = np.array([[2],[3],[4]])
+ >>> np.hstack((a,b))
+ array([[1, 2],
+ [2, 3],
+ [3, 4]])
+ """
+
+ if isinstance(tup[0], sdarray):
+ matrix_factory = DoubleFactory2D.sparse
+ else:
+ tup = map(array, tup)
+ matrix_factory = DoubleFactory2D.dense
+
+ hstacked_matrix = tup[0]._M
+ for the_array in tup[1:]:
+ hstacked_matrix = matrix_factory.appendColumns(hstacked_matrix, the_array._M)
+ return(ndarray(hstacked_matrix))
+
+
+def where (condition, x=None, y=None):
+ """
+ Return a masked array with elements from x or y, depending on condition.
+
+ Returns a masked array, shaped like condition, where the elements
+ are from `x` when `condition` is True, and from `y` otherwise.
+ If neither `x` nor `y` are given, the function returns a tuple of
+ indices where `condition` is True (the result of
+ ``condition.nonzero()``).
+
+ Parameters
+ ----------
+ condition : array_like, bool
+ The condition to meet. For each True element, yield the corresponding
+ element from `x`, otherwise from `y`.
+ x, y : array_like, optional
+ Values from which to choose. `x` and `y` need to have the same shape
+ as condition, or be broadcast-able to that shape.
+
+ Returns
+ -------
+ out : MaskedArray or tuple of ndarrays
+ The resulting masked array if `x` and `y` were given, otherwise
+ the result of ``condition.nonzero()``.
+
+ See Also
+ --------
+ numpy.where : Equivalent function in the top-level NumPy module.
+
+ Examples
+ --------
+ >>> x = np.ma.array(np.arange(9.).reshape(3, 3), mask=[[0, 1, 0],
+ ... [1, 0, 1],
+ ... [0, 1, 0]])
+ >>> print x
+ [[0.0 -- 2.0]
+ [-- 4.0 --]
+ [6.0 -- 8.0]]
+ >>> np.ma.where(x > 5) # return the indices where x > 5
+ (array([2, 2]), array([0, 2]))
+
+ >>> print np.ma.where(x > 5, x, -3.1416)
+ [[-3.1416 -- -3.1416]
+ [-- -3.1416 --]
+ [6.0 -- 8.0]]
+
+ """
+
+## if x is None and y is None:
+## return filled(condition, 0).nonzero()
+## elif x is None or y is None:
+## raise ValueError, "Either both or neither x and y should be given."
+## # Get the condition ...............
+## fc = filled(condition, 0).astype(MaskType)
+## notfc = np.logical_not(fc)
+## # Get the data ......................................
+## xv = getdata(x)
+## yv = getdata(y)
+## if x is masked:
+## ndtype = yv.dtype
+## elif y is masked:
+## ndtype = xv.dtype
+## else:
+## ndtype = np.find_common_type([xv.dtype, yv.dtype], [])
+## # Construct an empty array and fill it
+## d = np.empty(fc.shape, dtype=ndtype).view(MaskedArray)
+## _data = d._data
+## np.putmask(_data, fc, xv.astype(ndtype))
+## np.putmask(_data, notfc, yv.astype(ndtype))
+## # Create an empty mask and fill it
+## _mask = d._mask = np.zeros(fc.shape, dtype=MaskType)
+## np.putmask(_mask, fc, getmask(x))
+## np.putmask(_mask, notfc, getmask(y))
+## _mask |= getmaskarray(condition)
+## if not _mask.any():
+## d._mask = nomask
+## return d
+
+
+
+
+
+
+
+
+## def where(condition , tup = 'blank', arg3 = 'blank'):
+
+
+
+
+
+
+
+
+## def conditioncheck(x):
+## if x == 'True':
+## return(1)
+## else:
+## return(0)
+
+## if isinstance(condition, bool):
+## truth_matrix = zeros(z.columns(), z.rows())
+## for i in xrange(truth_matrix.rows):
+## for j in xrange(truth_matrix.columns):
+## truth_matrix.set(i,j, conditioncheck(z.get(i,j)))
+## else:
+## truth_matrix = zeros((len(condition), len(condition[0])))._M
+## for i in xrange(truth_matrix.rows()):
+## for j in xrange(truth_matrix.columns()):
+## truth_matrix.set(i,j, conditioncheck(condition[i][j]))
+
+## if arg3 == 'blank':
+## if tup == 'blank':
+## row_list = IntArrayList()
+## column_list = IntArrayList()
+## coordinate_list = DoubleArrayList()
+## truth_matrix.getNonZeros(row_list, column_list, coordinate_list)
+## return( (array(row_list), array(column_list)) )
+## else:
+## value_matrix = list(tup)
+## for i, x in enumerate(value_matrix):
+## if isinstance(x, int):
+## matfac = DoubleFactory2D.dense
+## matrix = matfac.make(truth_matrix.rows(), truth_matrix.columns(), x)
+## value_matrix[i] = matrix
+## else:
+## value_matrix[i] = x._M
+## return_array = zeros((truth_matrix.rows(), truth_matrix.columns()))._M
+## for i in xrange(truth_matrix.rows()):
+## for j in xrange(truth_matrix.columns()):
+## if truth_matrix.get(i,j) == 1:
+## return_array.set(i,j, value_matrix[0].get(i,j))
+## else:
+## return_array.set(i,j, value_matrix[1].get(i,j))
+## else:
+## value_matrix = [ tup , arg3 ]
+## for i, x in enumerate(value_matrix):
+## if isinstance(x, int):
+## matfac = DoubleFactory2D.dense
+## matrix = matfac.make(truth_matrix.rows(), truth_matrix.columns(), x)
+## value_matrix[i] = matrix
+## else:
+## value_matrix[i] = x
+## return_array = zeros((truth_matrix.rows(), truth_matrix.columns()))._M
+## for i in xrange(truth_matrix.rows()):
+## for j in xrange(truth_matrix.columns()):
+## if truth_matrix.get(i,j) == 1:
+## print(type(value_matrix[0]))
+## return_array.set(i,j, value_matrix[0].get(i,j))
+## else:
+## return_array.set(i,j, value_matrix[1].get(i,j))
+
+
+## return( return_array )
+
+def nonzero(array):
+ """Return the indices of the elements that are non-zero.
+ Returns a tuple of arrays, one for each dimension of a, containing the indices of the non-zero elements
+ in that dimension. The corresponding non-zero values can be obtained with:
+ Parameters:
+ a : array_like
+ Input array.
+ Returns:
+ tuple_of_arrays : tuple
+ Indices of elements that are non-zero.
+
+ >>> x = np.eye(3)
+
+ >>> x
+ array([[ 1., 0., 0.],
+ [ 0., 1., 0.],
+ [ 0., 0., 1.]])
+
+ >>> np.nonzero(x)
+ (array([0, 1, 2]), array([0, 1, 2]))
+
+ >>> x[np.nonzero(x)]
+ array([ 1., 1., 1.])
+
+ >>> np.transpose(np.nonzero(x))
+ array([[0, 0],
+ [1, 1],
+ [2, 2]])"""
+
+ rowList = IntArrayList()
+ columnList = IntArrayList()
+ coordinateList = DoubleArrayList()
+ array._M.getNonZeros(rowList, columnList, coordinateList)
+#TODO update array function to deal with Int....
+ return(array(rowList), array(columnList))
+
+def repeat(array, repeat_tup, axis = 2):
+ """
+ Repeat elements of an array.
+
+ Parameters:
+ a : array_like
+ Input array.
+ repeats : {int, array of ints}
+ The number of repetitions for each element. repeats is broadcasted to fit the shape of the given axis.
+ axis : int, optional
+ The axis along which to repeat values. By default, use the flattened input array, and return a flat output array.
+ Returns:
+ repeated_array : ndarray
+ Output array which has the same shape as a, except along the given axis.
+ See also
+ tile
+ Tile an array.
+ Examples
+
+ >>> x = np.array([[1,2],[3,4]])
+ >>> np.repeat(x, 2)
+ array([1, 1, 2, 2, 3, 3, 4, 4])
+ >>> np.repeat(x, 3, axis=1)
+ array([[1, 1, 1, 2, 2, 2],
+ [3, 3, 3, 4, 4, 4]])
+ >>> np.repeat(x, [1, 2], axis=0)
+ array([[1, 2],
+ [3, 4],
+ [3, 4]])
+ """
+ repeat = list(repeat_tup)
+ #TODO: Make sure this can handle sparse matrices as well. See the vstack function for ideas.
+ matrix_factory = DoubleFactory2D.dense
+ if axis == 1:
+ repeat_matrix = matrix_factory.repeat(array._M.viewPart(0,0,array._M.rows(),1),1,repeat[0])
+ for i in range( array._M.columns())[1:]:
+ repeated_slice = matrix_factory.repeat(array._M.viewPart(0, i, array._M.rows(), 1) , 1, repeat[i])
+ repeat_matrix = matrix_factory.appendColumns(repeat_matrix, repeated_slice )
+ return(repeat_matrix)
+ elif axis == 0:
+ repeat_matrix = matrix_factory.repeat(array._M.viewPart(0,0,1,array._M.columns()),repeat[0],1)
+ for i in range(array._M.columns())[1:]:
+ repeat_matrix = matrix_factory.appendRows(repeat_matrix,
+ matrix_factory.repeat(array._M.viewPart(i,0,1,array._M.columns()),
+ repeat[i], 1))
+ return(repeat_matrix)
+ else:
+ pass
+
+
+
+
+
+#One
+#From scipy sparse.lil_matrix, sparse.hstack, sparse.vstack
+
+def matrix():
+ #This is not pressing. I updated my cobra modules to use array instead of
+ #matrix so this can be dealt with later.
+ pass
+
+
+
+
+
+
diff --git a/cobra/oven/danielhyduke/jython/numpy/core/multiarray.py b/cobra/oven/danielhyduke/jython/numpy/core/multiarray.py
new file mode 100644
index 0000000..f781dbf
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/core/multiarray.py
@@ -0,0 +1,312 @@
+#cobra.numjy.multiarray.py
+#Basic matrix class that is going to be used to mimic numpy.ndarray
+#capabilities.
+#
+#Derived from Simon Galbraith's ncajava Matrix.py file
+
+
+#To get numerictypes to work we just need to have these defined
+# from numpy.core.multiarray import typeinfo, dtype
+
+#TODO: add in the __eq_function
+
+
+__all__ = ['ndarray','array',]
+import java, javax, jarray
+from copy import deepcopy
+from cern.colt.list import IntArrayList, DoubleArrayList
+from cern.colt.matrix import DoubleMatrix2D
+from cern.colt.matrix.DoubleFactory2D import dense,sparse;
+from cern.colt.matrix.impl import DenseDoubleMatrix2D
+from cern.colt.matrix.impl import SparseDoubleMatrix2D
+from cern.colt.matrix.linalg import Algebra;
+from org.python.core.exceptions import ValueError as PyValueException;
+from org.python.core import PyString,PySlice,PySequence,PyList;
+
+class ndarray(javax.swing.table.AbstractTableModel):
+ _M = None;
+ _name = 'data matrix'
+ varname = ''
+ column_names = []
+ row_names = []
+
+ def __init__(self, M=None, N=None, v=None, sparse=None):
+
+ """
+ M is the number of rows
+ N is the number of columns
+ v is the default value
+ """
+ if isinstance(M, DoubleMatrix2D):
+ self._M = M.copy();
+ elif (isinstance(M, int) and isinstance(N, int)):
+ if sparse:
+ F = sparse
+ else:
+ F = dense;
+ if v is None:
+ self._M = F.make(M, N, 0);
+ elif isinstance(v, int):
+ self._M = F.make(M, N, v);
+ elif isinstance(v, PyList):
+ self._M = F.make(jarray.array(v, 'd'),1)
+ elif isinstance(v, PyString):
+ self._M = F.random(M, N);
+ else:
+ if sparse:
+ self._M = SparseDoubleMatrix2D(v)
+ else:
+ self._M = ndarray(v)
+ self.shape = (self._M.rows(), self._M.columns())
+
+
+ def __copy__(self):
+ r = new.instance(self.__class__, self.__dict__.copy())
+ r._M = self._M.copy();
+ return r
+
+ def __sub__(A, B):
+ [ar, ac]=size(A);
+ C = ndarray(ar,ac,0);
+ for i in range(ar):
+ for j in range(ac):
+ C[i, j]=A[i, j]-B[i, j]
+ return C
+
+ def __mul__(A, B):
+ # need to check types and multiple based on them..
+ try:
+ F = Algebra();
+ C=(F.mult(A._M, B._M));
+ except:
+ raise PyValueException, "Inner dimension mismatch in matrix multiply.";
+ return None;
+ return ndarray(C)
+ def __div__(A, B):
+ try:
+ F = Algebra();
+ R = F.solve(A._M, B._M);
+ return R;
+ except (java.lang.IllegalArgumentException), e:
+ # check the error class types according to the matrix class so we can intelligently report the error.
+ print e.getMessage()
+ return None
+ def __repr__(self):
+ return self._M.toString();
+
+ def __str__(self):
+ return self._M.toString();
+
+ def __sz__(self):
+ if isinstance(self, ndarray):
+ x = self._M.rows();
+ y = self._M.columns();
+ return (x, y);
+ else:
+ raise PyValueException, "Argument must be a matrix.";
+
+ def __setitem__(self, idx, v):
+ if v is None:
+ print idx
+ raise PyValueException, "v is none"
+ if isinstance(v, float):
+ self._M.set(idx[0], idx[1], v);
+ return
+
+ Y = idx[1]
+ X = idx[0]
+ if isinstance(X, PyList):
+ X=map(lambda x: x, X)
+ elif isinstance(X, PySlice):
+ if X.start == None:
+ X=range(0, self._M.rows())
+ elif isinstance(X, int):
+ X = [X]
+
+ if isinstance(Y, PyList):
+ Y = map(lambda x: x, Y);
+ elif isinstance(Y, PySlice):
+ if Y.start == None:
+ Y = range(0, self._M.cols())
+ elif isinstance(Y, int):
+ Y = [Y];
+
+ order = 0
+ if len(X) > len(Y):
+ order = 1
+
+ #print "the order is " , order
+ if order == 0:
+ y = 1
+ for q in Y:
+ x = 1
+ for z in X:
+ # print z,q,x,y,v
+ self._M.set(z, q, v[x, y])
+ x += 1
+ y += 1
+ else:
+ x = 1
+ for z in X:
+ y = 1
+ for q in Y:
+ self._M.set(z, q, v[x, y])
+ y += 1
+ x += 1
+
+ def __getslice__(self, i, j):
+ if i.start != None:
+ x = range(i.start, i.stop);
+ else:
+ x = range(0, self._M.rows())
+ if j.start != None:
+ y = range(j.start, j.stop)
+ else:
+ y = range(0, self._M.columns())
+
+ return ndarray(self._M.viewSelection(x, y))
+
+
+ def __getitem__(self, idx):
+ x = idx[0]
+ y = idx[1]
+ if x < 0 or y < 0:
+ raise PyValueException, "Index must be positive number"
+ # this will fail on pyslice
+
+ if isinstance(x, PySlice):
+ if x.start != None:
+ x = range(x.start, x.stop);
+ else:
+ x = range(0, self._M.rows())
+ elif isinstance(x, int):
+ x = x
+ x = [x]
+ elif isinstance(x, PyList):
+ x = map(lambda x: x, x)
+
+ if isinstance(y, int):
+ y = y
+ y = [y]
+ elif isinstance(y, PySlice):
+ if y.start != None:
+ y = range(y.start, y.stop)
+ else:
+ y = range(0, self._M.columns())
+ elif isinstance(y, PySlice):
+ if y.start != None:
+ y = range(y.start, y.stop)
+ else:
+ y = range(0, self._M.columns())
+ elif isinstance(y, PyList):
+ y = map(lambda x: x, y)
+
+ if len(x) < 2 and len(y) < 2:
+ r = self._M.getQuick(x[0], y[0])
+ return float(r) # this is a specific element
+ else:
+ return ndarray(self._M.viewSelection(x, y))
+
+
+def array(A, dtype=float, copy=True, subok=False, ndmin=True):
+ """Create an array to mimic the features of the numpy.ndarray
+
+ Parameters
+ ----------
+ A: An array like object. Currently a list of lists or tuple
+ of tuples that will be converted into a 2D array.
+
+ dtype: data-type. The default is double.
+
+ copy: makes a deepcopy of the elements in the array if set to True
+
+ order: dummy variable to match numpy.array interface
+
+ subok: dummy variable to match numpy.array interface
+
+ ndmin: dummy variable to match numpy.array interface
+ """
+ if isinstance(A, ndarray):
+ return(A)
+ #BUG: What is the point of this?
+ if isinstance(A, IntArrayList):
+ the_array = ndarray(1, A.size())
+ for x in xrange(A.size()):
+ print(A.get(x))
+ the_array[x] = A.get(x)
+ return(the_array)
+
+ number_of_rows = len(A)
+ if hasattr(A[0], '__iter__'):
+ number_of_columns = len(A[0])
+ else:
+ number_of_columns = number_of_rows
+ number_of_rows = 1
+ A = [A]
+ the_array = ndarray(number_of_rows, number_of_columns)
+ if number_of_columns > 1 and number_of_rows > 1:
+ the_array.ndim = 2
+ else:
+ the_array.ndim = 1
+ #This can be sped up significantly
+ for i in range(number_of_rows):
+ the_row = A[i]
+ for j in range(number_of_columns):
+ the_array[i, j] = dtype(the_row[j])
+ return(the_array)
+
+def zeros(shape, dtype=float, order='C'):
+ """Return a new array of given shape and type, filled with zeros.
+
+ Parameters
+ ----------
+ shape : {tuple of ints, int}
+ Shape of the new array, e.g., ``(2, 3)`` or ``2``.
+ dtype : data-type, optional
+ The desired data-type for the array, e.g., `numpy.int8`. Default is
+ `numpy.float64`.
+ order : {'C', 'F'}, optional
+ Whether to store multidimensional data in C- or Fortran-contiguous
+ (row- or column-wise) order in memory.
+
+ Returns
+ -------
+ out : ndarray
+ Array of zeros with the given shape, dtype, and order.
+
+ See Also
+ --------
+ numpy.zeros_like : Return an array of zeros with shape and type of input.
+ numpy.ones_like : Return an array of ones with shape and type of input.
+ numpy.empty_like : Return an empty array with shape and type of input.
+ numpy.ones : Return a new array setting values to one.
+ numpy.empty : Return a new uninitialized array.
+
+ Examples
+ --------
+ >>> np.zeros(5)
+ array([ 0., 0., 0., 0., 0.])
+
+ >>> np.zeros((5,), dtype=numpy.int)
+ array([0, 0, 0, 0, 0])
+
+ >>> np.zeros((2, 1))
+ array([[ 0.],
+ [ 0.]])
+
+ >>> s = (2,2)
+ >>> np.zeros(s)
+ array([[ 0., 0.],
+ [ 0., 0.]])
+
+ >>> np.zeros((2,), dtype=[('x', 'i4'), ('y', 'i4')])
+ array([(0, 0), (0, 0)],
+ dtype=[('x', '<i4'), ('y', '<i4')])
+"""
+ return(ndarray(shape[0], shape[1]))
+
+def empty(shape, dtype=float, order='C'):
+ """Because we don't like using unitialized arrays. We'll just
+ call the zeros function even thought it might be a tad slower
+ """
+ return(zeros(shape, dtype, order))
diff --git a/cobra/oven/danielhyduke/jython/numpy/core/numeric.py b/cobra/oven/danielhyduke/jython/numpy/core/numeric.py
new file mode 100755
index 0000000..1bd6f51
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/core/numeric.py
@@ -0,0 +1,2217 @@
+#TODO: Convert this to use the cern.colt class items.
+__all__ = ['newaxis', 'ndarray', 'flatiter', 'ufunc',
+ 'arange', 'array', 'zeros', 'empty', 'broadcast', 'dtype',
+ 'fromstring', 'fromfile', 'frombuffer','newbuffer',
+ 'getbuffer', 'int_asbuffer', 'where', 'argwhere',
+ 'concatenate', 'fastCopyAndTranspose', 'lexsort',
+ 'set_numeric_ops', 'can_cast',
+ 'asarray', 'asanyarray', 'ascontiguousarray', 'asfortranarray',
+ 'isfortran', 'empty_like', 'zeros_like',
+ 'correlate', 'convolve', 'inner', 'dot', 'outer', 'vdot',
+ 'alterdot', 'restoredot', 'roll', 'rollaxis', 'cross', 'tensordot',
+ 'array2string', 'get_printoptions', 'set_printoptions',
+ 'array_repr', 'array_str', 'set_string_function',
+ 'little_endian', 'require',
+ 'fromiter', 'array_equal', 'array_equiv',
+ 'indices', 'fromfunction',
+ 'load', 'loads', 'isscalar', 'binary_repr', 'base_repr',
+ 'ones', 'identity', 'allclose', 'compare_chararrays', 'putmask',
+ 'seterr', 'geterr', 'setbufsize', 'getbufsize',
+ 'seterrcall', 'geterrcall', 'errstate', 'flatnonzero',
+ 'Inf', 'inf', 'infty', 'Infinity',
+ 'nan', 'NaN', 'False_', 'True_', 'bitwise_not']#,
+# 'CLIP', 'RAISE', 'WRAP', 'MAXDIMS', 'BUFSIZE', 'ALLOW_THREADS']
+
+import sys
+import warnings
+#import multiarray
+import Matrix as multiarray
+#import umath
+from umath import *
+import numerictypes
+from numerictypes import *
+
+bitwise_not = invert
+
+#CLIP = multiarray.CLIP
+#WRAP = multiarray.WRAP
+#RAISE = multiarray.RAISE
+#MAXDIMS = multiarray.MAXDIMS
+#ALLOW_THREADS = multiarray.ALLOW_THREADS
+#BUFSIZE = multiarray.BUFSIZE
+
+ndarray = multiarray.ndarray
+flatiter = multiarray.flatiter
+broadcast = multiarray.broadcast
+dtype = multiarray.dtype
+ufunc = type(sin)
+
+
+# originally from Fernando Perez's IPython
+def zeros_like(a):
+ """
+ Returns an array of zeros with the same shape and type as a given array.
+
+ Equivalent to ``a.copy().fill(0)``.
+
+ Parameters
+ ----------
+ a : array_like
+ The shape and data-type of `a` defines the parameters of
+ the returned array.
+
+ Returns
+ -------
+ out : ndarray
+ Array of zeros with same shape and type as `a`.
+
+ See Also
+ --------
+ numpy.ones_like : Return an array of ones with shape and type of input.
+ numpy.empty_like : Return an empty array with shape and type of input.
+ numpy.zeros : Return a new array setting values to zero.
+ numpy.ones : Return a new array setting values to one.
+ numpy.empty : Return a new uninitialized array.
+
+ Examples
+ --------
+ >>> x = np.arange(6)
+ >>> x = x.reshape((2, 3))
+ >>> x
+ array([[0, 1, 2],
+ [3, 4, 5]])
+ >>> np.zeros_like(x)
+ array([[0, 0, 0],
+ [0, 0, 0]])
+
+ """
+ if isinstance(a, ndarray):
+ res = ndarray.__new__(type(a), a.shape, a.dtype, order=a.flags.fnc)
+ res.fill(0)
+ return res
+ try:
+ wrap = a.__array_wrap__
+ except AttributeError:
+ wrap = None
+ a = asarray(a)
+ res = zeros(a.shape, a.dtype)
+ if wrap:
+ res = wrap(res)
+ return res
+
+def empty_like(a):
+ """
+ Create a new array with the same shape and type as another.
+
+ Parameters
+ ----------
+ a : ndarray
+ Returned array will have same shape and type as `a`.
+
+ See Also
+ --------
+ zeros_like, ones_like, zeros, ones, empty
+
+ Notes
+ -----
+ This function does *not* initialize the returned array; to do that use
+ `zeros_like` or `ones_like` instead.
+
+ Examples
+ --------
+ >>> a = np.array([[1,2,3],[4,5,6]])
+ >>> np.empty_like(a)
+ >>> np.empty_like(a)
+ array([[-1073741821, -1067702173, 65538], #random data
+ [ 25670, 23454291, 71800]])
+
+ """
+ if isinstance(a, ndarray):
+ res = ndarray.__new__(type(a), a.shape, a.dtype, order=a.flags.fnc)
+ return res
+ try:
+ wrap = a.__array_wrap__
+ except AttributeError:
+ wrap = None
+ a = asarray(a)
+ res = empty(a.shape, a.dtype)
+ if wrap:
+ res = wrap(res)
+ return res
+
+# end Fernando's utilities
+
+
+def extend_all(module):
+ adict = {}
+ for a in __all__:
+ adict[a] = 1
+ try:
+ mall = getattr(module, '__all__')
+ except AttributeError:
+ mall = [k for k in module.__dict__.keys() if not k.startswith('_')]
+ for a in mall:
+ if a not in adict:
+ __all__.append(a)
+
+extend_all(umath)
+extend_all(numerictypes)
+
+newaxis = None
+
+
+arange = multiarray.arange
+array = multiarray.array
+zeros = multiarray.zeros
+empty = multiarray.empty
+fromstring = multiarray.fromstring
+fromiter = multiarray.fromiter
+fromfile = multiarray.fromfile
+frombuffer = multiarray.frombuffer
+newbuffer = multiarray.newbuffer
+getbuffer = multiarray.getbuffer
+int_asbuffer = multiarray.int_asbuffer
+where = multiarray.where
+concatenate = multiarray.concatenate
+fastCopyAndTranspose = multiarray._fastCopyAndTranspose
+set_numeric_ops = multiarray.set_numeric_ops
+can_cast = multiarray.can_cast
+lexsort = multiarray.lexsort
+compare_chararrays = multiarray.compare_chararrays
+putmask = multiarray.putmask
+
+def asarray(a, dtype=None, order=None):
+ """
+ Convert the input to an array.
+
+ Parameters
+ ----------
+ a : array_like
+ Input data, in any form that can be converted to an array. This
+ includes lists, lists of tuples, tuples, tuples of tuples, tuples
+ of lists and ndarrays.
+ dtype : data-type, optional
+ By default, the data-type is inferred from the input data.
+ order : {'C', 'F'}, optional
+ Whether to use row-major ('C') or column-major ('FORTRAN') memory
+ representation. Defaults to 'C'.
+
+ Returns
+ -------
+ out : ndarray
+ Array interpretation of `a`. No copy is performed if the input
+ is already an ndarray. If `a` is a subclass of ndarray, a base
+ class ndarray is returned.
+
+ See Also
+ --------
+ asanyarray : Similar function which passes through subclasses.
+ ascontiguousarray : Convert input to a contiguous array.
+ asfarray : Convert input to a floating point ndarray.
+ asfortranarray : Convert input to an ndarray with column-major
+ memory order.
+ asarray_chkfinite : Similar function which checks input for NaNs and Infs.
+ fromiter : Create an array from an iterator.
+ fromfunction : Construct an array by executing a function on grid
+ positions.
+
+ Examples
+ --------
+ Convert a list into an array:
+
+ >>> a = [1, 2]
+ >>> np.asarray(a)
+ array([1, 2])
+
+ Existing arrays are not copied:
+
+ >>> a = np.array([1, 2])
+ >>> np.asarray(a) is a
+ True
+
+ """
+ return array(a, dtype, copy=False, order=order)
+
+def asanyarray(a, dtype=None, order=None):
+ """
+ Convert the input to a ndarray, but pass ndarray subclasses through.
+
+ Parameters
+ ----------
+ a : array_like
+ Input data, in any form that can be converted to an array. This
+ includes scalars, lists, lists of tuples, tuples, tuples of tuples,
+ tuples of lists and ndarrays.
+ dtype : data-type, optional
+ By default, the data-type is inferred from the input data.
+ order : {'C', 'F'}, optional
+ Whether to use row-major ('C') or column-major ('F') memory
+ representation. Defaults to 'C'.
+
+ Returns
+ -------
+ out : ndarray or an ndarray subclass
+ Array interpretation of `a`. If `a` is an ndarray or a subclass
+ of ndarray, it is returned as-is and no copy is performed.
+
+ See Also
+ --------
+ asarray : Similar function which always returns ndarrays.
+ ascontiguousarray : Convert input to a contiguous array.
+ asfarray : Convert input to a floating point ndarray.
+ asfortranarray : Convert input to an ndarray with column-major
+ memory order.
+ asarray_chkfinite : Similar function which checks input for NaNs and Infs.
+ fromiter : Create an array from an iterator.
+ fromfunction : Construct an array by executing a function on grid
+ positions.
+
+ Examples
+ --------
+ Convert a list into an array:
+
+ >>> a = [1, 2]
+ >>> np.asanyarray(a)
+ array([1, 2])
+
+ Instances of `ndarray` subclasses are passed through as-is:
+
+ >>> a = np.matrix([1, 2])
+ >>> np.asanyarray(a) is a
+ True
+
+ """
+ return array(a, dtype, copy=False, order=order, subok=True)
+
+def ascontiguousarray(a, dtype=None):
+ """
+ Return a contiguous array in memory (C order).
+
+ Parameters
+ ----------
+ a : array_like
+ Input array.
+ dtype : str or dtype object, optional
+ Data-type of returned array.
+
+ Returns
+ -------
+ out : ndarray
+ Contiguous array of same shape and content as `a`, with type `dtype`
+ if specified.
+
+ See Also
+ --------
+ asfortranarray : Convert input to an ndarray with column-major
+ memory order.
+ require : Return an ndarray that satisfies requirements.
+ ndarray.flags : Information about the memory layout of the array.
+
+ Examples
+ --------
+ >>> x = np.arange(6).reshape(2,3)
+ >>> np.ascontiguousarray(x, dtype=np.float32)
+ array([[ 0., 1., 2.],
+ [ 3., 4., 5.]], dtype=float32)
+ >>> x.flags['C_CONTIGUOUS']
+ True
+
+ """
+ return array(a, dtype, copy=False, order='C', ndmin=1)
+
+def asfortranarray(a, dtype=None):
+ """
+ Return an array laid out in Fortran order in memory.
+
+ Parameters
+ ----------
+ a : array_like
+ Input array.
+ dtype : str or dtype object, optional
+ By default, the data-type is inferred from the input data.
+
+ Returns
+ -------
+ out : ndarray
+ The input `a` in Fortran, or column-major, order.
+
+ See Also
+ --------
+ ascontiguousarray : Convert input to a contiguous (C order) array.
+ asanyarray : Convert input to an ndarray with either row or
+ column-major memory order.
+ require : Return an ndarray that satisfies requirements.
+ ndarray.flags : Information about the memory layout of the array.
+
+ Examples
+ --------
+ >>> x = np.arange(6).reshape(2,3)
+ >>> y = np.asfortranarray(x)
+ >>> x.flags['F_CONTIGUOUS']
+ False
+ >>> y.flags['F_CONTIGUOUS']
+ True
+
+ """
+ return array(a, dtype, copy=False, order='F', ndmin=1)
+
+def require(a, dtype=None, requirements=None):
+ """
+ Return an ndarray of the provided type that satisfies requirements.
+
+ This function is useful to be sure that an array with the correct flags
+ is returned for passing to compiled code (perhaps through ctypes).
+
+ Parameters
+ ----------
+ a : array_like
+ The object to be converted to a type-and-requirement-satisfying array.
+ dtype : data-type
+ The required data-type, the default data-type is float64).
+ requirements : str or list of str
+ The requirements list can be any of the following
+
+ * 'F_CONTIGUOUS' ('F') - ensure a Fortran-contiguous array
+ * 'C_CONTIGUOUS' ('C') - ensure a C-contiguous array
+ * 'ALIGNED' ('A') - ensure a data-type aligned array
+ * 'WRITEABLE' ('W') - ensure a writable array
+ * 'OWNDATA' ('O') - ensure an array that owns its own data
+
+ See Also
+ --------
+ asarray : Convert input to an ndarray.
+ asanyarray : Convert to an ndarray, but pass through ndarray subclasses.
+ ascontiguousarray : Convert input to a contiguous array.
+ asfortranarray : Convert input to an ndarray with column-major
+ memory order.
+ ndarray.flags : Information about the memory layout of the array.
+
+ Notes
+ -----
+ The returned array will be guaranteed to have the listed requirements
+ by making a copy if needed.
+
+ Examples
+ --------
+ >>> x = np.arange(6).reshape(2,3)
+ >>> x.flags
+ C_CONTIGUOUS : True
+ F_CONTIGUOUS : False
+ OWNDATA : False
+ WRITEABLE : True
+ ALIGNED : True
+ UPDATEIFCOPY : False
+
+ >>> y = np.require(x, dtype=np.float32, requirements=['A', 'O', 'W', 'F'])
+ >>> y.flags
+ C_CONTIGUOUS : False
+ F_CONTIGUOUS : True
+ OWNDATA : True
+ WRITEABLE : True
+ ALIGNED : True
+ UPDATEIFCOPY : False
+
+ """
+ if requirements is None:
+ requirements = []
+ else:
+ requirements = [x.upper() for x in requirements]
+
+ if not requirements:
+ return asanyarray(a, dtype=dtype)
+
+ if 'ENSUREARRAY' in requirements or 'E' in requirements:
+ subok = False
+ else:
+ subok = True
+
+ arr = array(a, dtype=dtype, copy=False, subok=subok)
+
+ copychar = 'A'
+ if 'FORTRAN' in requirements or \
+ 'F_CONTIGUOUS' in requirements or \
+ 'F' in requirements:
+ copychar = 'F'
+ elif 'CONTIGUOUS' in requirements or \
+ 'C_CONTIGUOUS' in requirements or \
+ 'C' in requirements:
+ copychar = 'C'
+
+ for prop in requirements:
+ if not arr.flags[prop]:
+ arr = arr.copy(copychar)
+ break
+ return arr
+
+def isfortran(a):
+ """
+ Returns True if array is arranged in Fortran-order in memory
+ and dimension > 1.
+
+ Parameters
+ ----------
+ a : ndarray
+ Input array.
+
+
+ Examples
+ --------
+
+ np.array allows to specify whether the array is written in C-contiguous
+ order (last index varies the fastest), or FORTRAN-contiguous order in
+ memory (first index varies the fastest).
+
+ >>> a = np.array([[1, 2, 3], [4, 5, 6]], order='C')
+ >>> a
+ array([[1, 2, 3],
+ [4, 5, 6]])
+ >>> np.isfortran(a)
+ False
+
+ >>> b = np.array([[1, 2, 3], [4, 5, 6]], order='FORTRAN')
+ >>> b
+ array([[1, 2, 3],
+ [4, 5, 6]])
+ >>> np.isfortran(b)
+ True
+
+
+ The transpose of a C-ordered array is a FORTRAN-ordered array.
+
+ >>> a = np.array([[1, 2, 3], [4, 5, 6]], order='C')
+ >>> a
+ array([[1, 2, 3],
+ [4, 5, 6]])
+ >>> np.isfortran(a)
+ False
+ >>> b = a.T
+ >>> b
+ array([[1, 4],
+ [2, 5],
+ [3, 6]])
+ >>> np.isfortran(b)
+ True
+
+ 1-D arrays always evaluate as False.
+
+ >>> np.isfortran(np.array([1, 2], order='FORTRAN'))
+ False
+
+ """
+ return a.flags.fnc
+
+def argwhere(a):
+ """
+ Find the indices of array elements that are non-zero, grouped by element.
+
+ Parameters
+ ----------
+ a : array_like
+ Input data.
+
+ Returns
+ -------
+ index_array : ndarray
+ Indices of elements that are non-zero. Indices are grouped by element.
+
+ See Also
+ --------
+ where, nonzero
+
+ Notes
+ -----
+ ``np.argwhere(a)`` is the same as ``np.transpose(np.nonzero(a))``.
+
+ The output of ``argwhere`` is not suitable for indexing arrays.
+ For this purpose use ``where(a)`` instead.
+
+ Examples
+ --------
+ >>> x = np.arange(6).reshape(2,3)
+ >>> x
+ array([[0, 1, 2],
+ [3, 4, 5]])
+ >>> np.argwhere(x>1)
+ array([[0, 2],
+ [1, 0],
+ [1, 1],
+ [1, 2]])
+
+ """
+ return transpose(asanyarray(a).nonzero())
+
+def flatnonzero(a):
+ """
+ Return indices that are non-zero in the flattened version of a.
+
+ This is equivalent to a.ravel().nonzero()[0].
+
+ Parameters
+ ----------
+ a : ndarray
+ Input array.
+
+ Returns
+ -------
+ res : ndarray
+ Output array, containing the indices of the elements of `a.ravel()`
+ that are non-zero.
+
+ See Also
+ --------
+ nonzero : Return the indices of the non-zero elements of the input array.
+ ravel : Return a 1-D array containing the elements of the input array.
+
+ Examples
+ --------
+ >>> x = np.arange(-2, 3)
+ >>> x
+ array([-2, -1, 0, 1, 2])
+ >>> np.flatnonzero(x)
+ array([0, 1, 3, 4])
+
+ Use the indices of the non-zero elements as an index array to extract
+ these elements:
+
+ >>> x.ravel()[np.flatnonzero(x)]
+ array([-2, -1, 1, 2])
+
+ """
+ return a.ravel().nonzero()[0]
+
+_mode_from_name_dict = {'v': 0,
+ 's' : 1,
+ 'f' : 2}
+
+def _mode_from_name(mode):
+ if isinstance(mode, type("")):
+ return _mode_from_name_dict[mode.lower()[0]]
+ return mode
+
+def correlate(a,v,mode='valid',old_behavior=True):
+ """
+ Discrete, linear correlation of two 1-dimensional sequences.
+
+ This function is equivalent to
+
+ >>> np.convolve(a, v[::-1], mode=mode)
+
+ where ``v[::-1]`` is the reverse of `v`.
+
+ Parameters
+ ----------
+ a, v : array_like
+ Input sequences.
+ mode : {'valid', 'same', 'full'}, optional
+ Refer to the `convolve` docstring. Note that the default
+ is `valid`, unlike `convolve`, which uses `full`.
+ old_behavior : bool
+ If True, uses the old, numeric behavior (correlate(a,v) == correlate(v,
+ a), and the conjugate is not taken for complex arrays). If False, uses
+ the conventional signal processing definition (see note).
+
+ See Also
+ --------
+ convolve : Discrete, linear convolution of two
+ one-dimensional sequences.
+
+ Note
+ ----
+ If old_behavior is False, this function computes the correlation as
+ generally defined in signal processing texts::
+
+ z[k] = sum_n a[n] * conj(v[n+k])
+
+ with a and v sequences being zero-padded where necessary and conj being the
+ conjugate.
+
+ Examples
+ --------
+ >>> np.correlate([1, 2, 3], [0, 1, 0.5])
+ array([ 3.5])
+ >>> np.correlate([1, 2, 3], [0, 1, 0.5], "same")
+ array([ 2. , 3.5, 3. ])
+ >>> np.correlate([1, 2, 3], [0, 1, 0.5], "full")
+ array([ 0.5, 2. , 3.5, 3. , 0. ])
+
+ """
+ mode = _mode_from_name(mode)
+ if old_behavior:
+ warnings.warn("""
+The current behavior of correlate is deprecated for 1.4.0, and will be removed
+for NumPy 1.5.0.
+
+The new behavior fits the conventional definition of correlation: inputs are
+never swapped, and the second argument is conjugated for complex arrays.""",
+ DeprecationWarning)
+ return multiarray.correlate(a,v,mode)
+ else:
+ return multiarray.correlate2(a,v,mode)
+
+def convolve(a,v,mode='full'):
+ """
+ Returns the discrete, linear convolution of two one-dimensional sequences.
+
+ The convolution operator is often seen in signal processing, where it
+ models the effect of a linear time-invariant system on a signal [1]_. In
+ probability theory, the sum of two independent random variables is
+ distributed according to the convolution of their individual
+ distributions.
+
+ Parameters
+ ----------
+ a : (N,) array_like
+ First one-dimensional input array.
+ v : (M,) array_like
+ Second one-dimensional input array.
+ mode : {'full', 'valid', 'same'}, optional
+ 'full':
+ By default, mode is 'full'. This returns the convolution
+ at each point of overlap, with an output shape of (N+M-1,). At
+ the end-points of the convolution, the signals do not overlap
+ completely, and boundary effects may be seen.
+
+ 'same':
+ Mode `same` returns output of length ``max(M, N)``. Boundary
+ effects are still visible.
+
+ 'valid':
+ Mode `valid` returns output of length
+ ``max(M, N) - min(M, N) + 1``. The convolution product is only given
+ for points where the signals overlap completely. Values outside
+ the signal boundary have no effect.
+
+ Returns
+ -------
+ out : ndarray
+ Discrete, linear convolution of `a` and `v`.
+
+ See Also
+ --------
+ scipy.signal.fftconv : Convolve two arrays using the Fast Fourier
+ Transform.
+ scipy.linalg.toeplitz : Used to construct the convolution operator.
+
+ Notes
+ -----
+ The discrete convolution operation is defined as
+
+ .. math:: (f * g)[n] = \\sum_{m = -\\infty}^{\\infty} f[m] f[n - m]
+
+ It can be shown that a convolution :math:`x(t) * y(t)` in time/space
+ is equivalent to the multiplication :math:`X(f) Y(f)` in the Fourier
+ domain, after appropriate padding (padding is necessary to prevent
+ circular convolution). Since multiplication is more efficient (faster)
+ than convolution, the function `scipy.signal.fftconvolve` exploits the
+ FFT to calculate the convolution of large data-sets.
+
+ References
+ ----------
+ .. [1] Wikipedia, "Convolution", http://en.wikipedia.org/wiki/Convolution.
+
+ Examples
+ --------
+ Note how the convolution operator flips the second array
+ before "sliding" the two across one another:
+
+ >>> np.convolve([1, 2, 3], [0, 1, 0.5])
+ array([ 0. , 1. , 2.5, 4. , 1.5])
+
+ Only return the middle values of the convolution.
+ Contains boundary effects, where zeros are taken
+ into account:
+
+ >>> np.convolve([1,2,3],[0,1,0.5], 'same')
+ array([ 1. , 2.5, 4. ])
+
+ The two arrays are of the same length, so there
+ is only one position where they completely overlap:
+
+ >>> np.convolve([1,2,3],[0,1,0.5], 'valid')
+ array([ 2.5])
+
+ """
+ a,v = array(a, ndmin=1),array(v, ndmin=1)
+ if (len(v) > len(a)):
+ a, v = v, a
+ if len(a) == 0 :
+ raise ValueError('a cannot be empty')
+ if len(v) == 0 :
+ raise ValueError('v cannot be empty')
+ mode = _mode_from_name(mode)
+ return multiarray.correlate(a, v[::-1], mode)
+
+def outer(a,b):
+ """
+ Returns the outer product of two vectors.
+
+ Given two vectors, ``[a0, a1, ..., aM]`` and ``[b0, b1, ..., bN]``,
+ the outer product becomes::
+
+ [[a0*b0 a0*b1 ... a0*bN ]
+ [a1*b0 .
+ [ ... .
+ [aM*b0 aM*bN ]]
+
+ Parameters
+ ----------
+ a : array_like, shaped (M,)
+ First input vector. If either of the input vectors are not
+ 1-dimensional, they are flattened.
+ b : array_like, shaped (N,)
+ Second input vector.
+
+ Returns
+ -------
+ out : ndarray, shaped (M, N)
+ ``out[i, j] = a[i] * b[j]``
+
+ Notes
+ -----
+ The outer product of vectors is a special case of the Kronecker product.
+
+ Examples
+ --------
+ >>> x = np.array(['a', 'b', 'c'], dtype=object)
+
+ >>> np.outer(x, [1, 2, 3])
+ array([[a, aa, aaa],
+ [b, bb, bbb],
+ [c, cc, ccc]], dtype=object)
+
+ """
+ a = asarray(a)
+ b = asarray(b)
+ return a.ravel()[:,newaxis]*b.ravel()[newaxis,:]
+
+# try to import blas optimized dot if available
+try:
+ # importing this changes the dot function for basic 4 types
+ # to blas-optimized versions.
+ from _dotblas import dot, vdot, inner, alterdot, restoredot
+except ImportError:
+ # docstrings are in add_newdocs.py
+ inner = multiarray.inner
+ dot = multiarray.dot
+ def vdot(a, b):
+ return dot(asarray(a).ravel().conj(), asarray(b).ravel())
+ def alterdot():
+ pass
+ def restoredot():
+ pass
+
+def tensordot(a, b, axes=2):
+ """
+ Returns the tensor dot product for (ndim >= 1) arrays along an axes.
+
+ The first element of the sequence determines the axis or axes
+ in `a` to sum over, and the second element in `axes` argument sequence
+ determines the axis or axes in `b` to sum over.
+
+ Parameters
+ ----------
+ a : array_like
+ Input array.
+ b : array_like
+ Input array.
+ axes : shape tuple
+ Axes to be summed over.
+
+ See Also
+ --------
+ dot
+
+ Notes
+ -----
+ r_{xxx, yyy} = \\sum_k a_{xxx,k} b_{k,yyy}
+
+ When there is more than one axis to sum over, the corresponding
+ arguments to axes should be sequences of the same length with the first
+ axis to sum over given first in both sequences, the second axis second,
+ and so forth.
+
+ If the `axes` argument is an integer, N, then the last N dimensions of `a`
+ and first N dimensions of `b` are summed over.
+
+ Examples
+ --------
+ >>> a = np.arange(60.).reshape(3,4,5)
+ >>> b = np.arange(24.).reshape(4,3,2)
+ >>> c = np.tensordot(a,b, axes=([1,0],[0,1]))
+ >>> c.shape
+ (5, 2)
+ >>> c
+ array([[ 4400., 4730.],
+ [ 4532., 4874.],
+ [ 4664., 5018.],
+ [ 4796., 5162.],
+ [ 4928., 5306.]])
+
+ >>> # A slower but equivalent way of computing the same...
+ >>> c = np.zeros((5,2))
+ >>> for i in range(5):
+ ... for j in range(2):
+ ... for k in range(3):
+ ... for n in range(4):
+ ... c[i,j] += a[k,n,i] * b[n,k,j]
+
+ """
+ try:
+ iter(axes)
+ except:
+ axes_a = range(-axes,0)
+ axes_b = range(0,axes)
+ else:
+ axes_a, axes_b = axes
+ try:
+ na = len(axes_a)
+ axes_a = list(axes_a)
+ except TypeError:
+ axes_a = [axes_a]
+ na = 1
+ try:
+ nb = len(axes_b)
+ axes_b = list(axes_b)
+ except TypeError:
+ axes_b = [axes_b]
+ nb = 1
+
+ a, b = asarray(a), asarray(b)
+ as_ = a.shape
+ nda = len(a.shape)
+ bs = b.shape
+ ndb = len(b.shape)
+ equal = True
+ if (na != nb): equal = False
+ else:
+ for k in xrange(na):
+ if as_[axes_a[k]] != bs[axes_b[k]]:
+ equal = False
+ break
+ if axes_a[k] < 0:
+ axes_a[k] += nda
+ if axes_b[k] < 0:
+ axes_b[k] += ndb
+ if not equal:
+ raise ValueError, "shape-mismatch for sum"
+
+ # Move the axes to sum over to the end of "a"
+ # and to the front of "b"
+ notin = [k for k in range(nda) if k not in axes_a]
+ newaxes_a = notin + axes_a
+ N2 = 1
+ for axis in axes_a:
+ N2 *= as_[axis]
+ newshape_a = (-1, N2)
+ olda = [as_[axis] for axis in notin]
+
+ notin = [k for k in range(ndb) if k not in axes_b]
+ newaxes_b = axes_b + notin
+ N2 = 1
+ for axis in axes_b:
+ N2 *= bs[axis]
+ newshape_b = (N2, -1)
+ oldb = [bs[axis] for axis in notin]
+
+ at = a.transpose(newaxes_a).reshape(newshape_a)
+ bt = b.transpose(newaxes_b).reshape(newshape_b)
+ res = dot(at, bt)
+ return res.reshape(olda + oldb)
+
+def roll(a, shift, axis=None):
+ """
+ Roll array elements along a given axis.
+
+ Elements that roll beyond the last position are re-introduced at
+ the first.
+
+ Parameters
+ ----------
+ a : array_like
+ Input array.
+ shift : int
+ The number of places by which elements are shifted.
+ axis : int, optional
+ The axis along which elements are shifted. By default, the array
+ is flattened before shifting, after which the original
+ shape is restored.
+
+ Returns
+ -------
+ res : ndarray
+ Output array, with the same shape as `a`.
+
+ See Also
+ --------
+ rollaxis : Roll the specified axis backwards, until it lies in a
+ given position.
+
+ Examples
+ --------
+ >>> x = np.arange(10)
+ >>> np.roll(x, 2)
+ array([8, 9, 0, 1, 2, 3, 4, 5, 6, 7])
+
+ >>> x2 = np.reshape(x, (2,5))
+ >>> x2
+ array([[0, 1, 2, 3, 4],
+ [5, 6, 7, 8, 9]])
+ >>> np.roll(x2, 1)
+ array([[9, 0, 1, 2, 3],
+ [4, 5, 6, 7, 8]])
+ >>> np.roll(x2, 1, axis=0)
+ array([[5, 6, 7, 8, 9],
+ [0, 1, 2, 3, 4]])
+ >>> np.roll(x2, 1, axis=1)
+ array([[4, 0, 1, 2, 3],
+ [9, 5, 6, 7, 8]])
+
+ """
+ a = asanyarray(a)
+ if axis is None:
+ n = a.size
+ reshape = True
+ else:
+ n = a.shape[axis]
+ reshape = False
+ shift %= n
+ indexes = concatenate((arange(n-shift,n),arange(n-shift)))
+ res = a.take(indexes, axis)
+ if reshape:
+ return res.reshape(a.shape)
+ else:
+ return res
+
+def rollaxis(a, axis, start=0):
+ """
+ Roll the specified axis backwards, until it lies in a given position.
+
+ Parameters
+ ----------
+ a : ndarray
+ Input array.
+ axis : int
+ The axis to roll backwards. The positions of the other axes do not
+ change relative to one another.
+ start : int, optional
+ The axis is rolled until it lies before this position.
+
+ Returns
+ -------
+ res : ndarray
+ Output array.
+
+ See Also
+ --------
+ roll : Roll the elements of an array by a number of positions along a
+ given axis.
+
+ Examples
+ --------
+ >>> a = np.ones((3,4,5,6))
+ >>> np.rollaxis(a, 3, 1).shape
+ (3, 6, 4, 5)
+ >>> np.rollaxis(a, 2).shape
+ (5, 3, 4, 6)
+ >>> np.rollaxis(a, 1, 4).shape
+ (3, 5, 6, 4)
+
+ """
+ n = a.ndim
+ if axis < 0:
+ axis += n
+ if start < 0:
+ start += n
+ msg = 'rollaxis: %s (%d) must be >=0 and < %d'
+ if not (0 <= axis < n):
+ raise ValueError, msg % ('axis', axis, n)
+ if not (0 <= start < n+1):
+ raise ValueError, msg % ('start', start, n+1)
+ if (axis < start): # it's been removed
+ start -= 1
+ if axis==start:
+ return a
+ axes = range(0,n)
+ axes.remove(axis)
+ axes.insert(start, axis)
+ return a.transpose(axes)
+
+# fix hack in scipy which imports this function
+def _move_axis_to_0(a, axis):
+ return rollaxis(a, axis, 0)
+
+def cross(a, b, axisa=-1, axisb=-1, axisc=-1, axis=None):
+ """
+ Return the cross product of two (arrays of) vectors.
+
+ The cross product of `a` and `b` in :math:`R^3` is a vector perpendicular
+ to both `a` and `b`. If `a` and `b` are arrays of vectors, the vectors
+ are defined by the last axis of `a` and `b` by default, and these axes
+ can have dimensions 2 or 3. Where the dimension of either `a` or `b` is
+ 2, the third component of the input vector is assumed to be zero and the
+ cross product calculated accordingly. In cases where both input vectors
+ have dimension 2, the z-component of the cross product is returned.
+
+ Parameters
+ ----------
+ a : array_like
+ Components of the first vector(s).
+ b : array_like
+ Components of the second vector(s).
+ axisa : int, optional
+ Axis of `a` that defines the vector(s). By default, the last axis.
+ axisb : int, optional
+ Axis of `b` that defines the vector(s). By default, the last axis.
+ axisc : int, optional
+ Axis of `c` containing the cross product vector(s). By default, the
+ last axis.
+ axis : int, optional
+ If defined, the axis of `a`, `b` and `c` that defines the vector(s)
+ and cross product(s). Overrides `axisa`, `axisb` and `axisc`.
+
+ Returns
+ -------
+ c : ndarray
+ Vector cross product(s).
+
+ Raises
+ ------
+ ValueError
+ When the dimension of the vector(s) in `a` and/or `b` does not
+ equal 2 or 3.
+
+ See Also
+ --------
+ inner : Inner product
+ outer : Outer product.
+ ix_ : Construct index arrays.
+
+ Examples
+ --------
+ Vector cross-product.
+
+ >>> x = [1, 2, 3]
+ >>> y = [4, 5, 6]
+ >>> np.cross(x, y)
+ array([-3, 6, -3])
+
+ One vector with dimension 2.
+
+ >>> x = [1, 2]
+ >>> y = [4, 5, 6]
+ >>> np.cross(x, y)
+ array([12, -6, -3])
+
+ Equivalently:
+
+ >>> x = [1, 2, 0]
+ >>> y = [4, 5, 6]
+ >>> np.cross(x, y)
+ array([12, -6, -3])
+
+ Both vectors with dimension 2.
+
+ >>> x = [1,2]
+ >>> y = [4,5]
+ >>> np.cross(x, y)
+ -3
+
+ Multiple vector cross-products. Note that the direction of the cross
+ product vector is defined by the `right-hand rule`.
+
+ >>> x = np.array([[1,2,3], [4,5,6]])
+ >>> y = np.array([[4,5,6], [1,2,3]])
+ >>> np.cross(x, y)
+ array([[-3, 6, -3],
+ [ 3, -6, 3]])
+
+ The orientation of `c` can be changed using the `axisc` keyword.
+
+ >>> np.cross(x, y, axisc=0)
+ array([[-3, 3],
+ [ 6, -6],
+ [-3, 3]])
+
+ Change the vector definition of `x` and `y` using `axisa` and `axisb`.
+
+ >>> x = np.array([[1,2,3], [4,5,6], [7, 8, 9]])
+ >>> y = np.array([[7, 8, 9], [4,5,6], [1,2,3]])
+ >>> np.cross(x, y)
+ array([[ -6, 12, -6],
+ [ 0, 0, 0],
+ [ 6, -12, 6]])
+ >>> np.cross(x, y, axisa=0, axisb=0)
+ array([[-24, 48, -24],
+ [-30, 60, -30],
+ [-36, 72, -36]])
+
+ """
+ if axis is not None:
+ axisa,axisb,axisc=(axis,)*3
+ a = asarray(a).swapaxes(axisa, 0)
+ b = asarray(b).swapaxes(axisb, 0)
+ msg = "incompatible dimensions for cross product\n"\
+ "(dimension must be 2 or 3)"
+ if (a.shape[0] not in [2,3]) or (b.shape[0] not in [2,3]):
+ raise ValueError(msg)
+ if a.shape[0] == 2:
+ if (b.shape[0] == 2):
+ cp = a[0]*b[1] - a[1]*b[0]
+ if cp.ndim == 0:
+ return cp
+ else:
+ return cp.swapaxes(0, axisc)
+ else:
+ x = a[1]*b[2]
+ y = -a[0]*b[2]
+ z = a[0]*b[1] - a[1]*b[0]
+ elif a.shape[0] == 3:
+ if (b.shape[0] == 3):
+ x = a[1]*b[2] - a[2]*b[1]
+ y = a[2]*b[0] - a[0]*b[2]
+ z = a[0]*b[1] - a[1]*b[0]
+ else:
+ x = -a[2]*b[1]
+ y = a[2]*b[0]
+ z = a[0]*b[1] - a[1]*b[0]
+ cp = array([x,y,z])
+ if cp.ndim == 1:
+ return cp
+ else:
+ return cp.swapaxes(0,axisc)
+
+
+#Use numarray's printing function
+from arrayprint import array2string, get_printoptions, set_printoptions
+
+_typelessdata = [int_, float_, complex_]
+if issubclass(intc, int):
+ _typelessdata.append(intc)
+
+if issubclass(longlong, int):
+ _typelessdata.append(longlong)
+
+def array_repr(arr, max_line_width=None, precision=None, suppress_small=None):
+ """
+ Return the string representation of an array.
+
+ Parameters
+ ----------
+ arr : ndarray
+ Input array.
+ max_line_width : int, optional
+ The maximum number of columns the string should span. Newline
+ characters split the string appropriately after array elements.
+ precision : int, optional
+ Floating point precision. Default is the current printing precision
+ (usually 8), which can be altered using `set_printoptions`.
+ suppress_small : bool, optional
+ Represent very small numbers as zero, default is False. Very small
+ is defined by `precision`, if the precision is 8 then
+ numbers smaller than 5e-9 are represented as zero.
+
+ Returns
+ -------
+ string : str
+ The string representation of an array.
+
+ See Also
+ --------
+ array_str, array2string, set_printoptions
+
+ Examples
+ --------
+ >>> np.array_repr(np.array([1,2]))
+ 'array([1, 2])'
+ >>> np.array_repr(np.ma.array([0.]))
+ 'MaskedArray([ 0.])'
+ >>> np.array_repr(np.array([], np.int32))
+ 'array([], dtype=int32)'
+
+ >>> x = np.array([1e-6, 4e-7, 2, 3])
+ >>> np.array_repr(x, precision=6, suppress_small=True)
+ 'array([ 0.000001, 0. , 2. , 3. ])'
+
+ """
+ if arr.size > 0 or arr.shape==(0,):
+ lst = array2string(arr, max_line_width, precision, suppress_small,
+ ', ', "array(")
+ else: # show zero-length shape unless it is (0,)
+ lst = "[], shape=%s" % (repr(arr.shape),)
+ typeless = arr.dtype.type in _typelessdata
+
+ if arr.__class__ is not ndarray:
+ cName= arr.__class__.__name__
+ else:
+ cName = "array"
+ if typeless and arr.size:
+ return cName + "(%s)" % lst
+ else:
+ typename=arr.dtype.name
+ lf = ''
+ if issubclass(arr.dtype.type, flexible):
+ if arr.dtype.names:
+ typename = "%s" % str(arr.dtype)
+ else:
+ typename = "'%s'" % str(arr.dtype)
+ lf = '\n'+' '*len("array(")
+ return cName + "(%s, %sdtype=%s)" % (lst, lf, typename)
+
+def array_str(a, max_line_width=None, precision=None, suppress_small=None):
+ """
+ Return a string representation of the data in an array.
+
+ The data in the array is returned as a single string. This function
+ is similar to `array_repr`, the difference is that `array_repr` also
+ returns information on the type of array and data type.
+
+ Parameters
+ ----------
+ a : ndarray
+ Input array.
+ max_line_width : int, optional
+ Inserts newlines if text is longer than `max_line_width`.
+ precision : int, optional
+ Floating point precision. Default is the current printing precision
+ (usually 8), which can be altered using set_printoptions.
+ suppress_small : bool, optional
+ Represent very small numbers as zero, default is False. Very small is
+ defined by precision, if the precision is 8 then numbers smaller than
+ 5e-9 are represented as zero.
+
+ See Also
+ --------
+ array2string, array_repr, set_printoptions
+
+ Examples
+ --------
+ >>> np.array_str(np.arange(3))
+ >>> '[0 1 2]'
+
+ """
+ return array2string(a, max_line_width, precision, suppress_small, ' ', "", str)
+
+set_string_function = multiarray.set_string_function
+set_string_function(array_str, 0)
+set_string_function(array_repr, 1)
+
+little_endian = (sys.byteorder == 'little')
+
+
+def indices(dimensions, dtype=int):
+ """
+ Return an array representing the indices of a grid.
+
+ Compute an array where the subarrays contain index values 0,1,...
+ varying only along the corresponding axis.
+
+ Parameters
+ ----------
+ dimensions : sequence of ints
+ The shape of the grid.
+ dtype : dtype, optional
+ Data type of the result.
+
+ Returns
+ -------
+ grid : ndarray
+ The array of grid indices,
+ ``grid.shape = (len(dimensions),) + tuple(dimensions)``.
+
+ See Also
+ --------
+ mgrid, meshgrid
+
+ Notes
+ -----
+ The output shape is obtained by prepending the number of dimensions
+ in front of the tuple of dimensions, i.e. if `dimensions` is a tuple
+ ``(r0, ..., rN-1)`` of length ``N``, the output shape is
+ ``(N,r0,...,rN-1)``.
+
+ The subarrays ``grid[k]`` contains the N-D array of indices along the
+ ``k-th`` axis. Explicitly::
+
+ grid[k,i0,i1,...,iN-1] = ik
+
+ Examples
+ --------
+ >>> grid = np.indices((2, 3))
+ >>> grid.shape
+ (2,2,3)
+ >>> grid[0] # row indices
+ array([[0, 0, 0],
+ [1, 1, 1]])
+ >>> grid[1] # column indices
+ array([[0, 1, 2],
+ [0, 1, 2]])
+
+ The indices can be used as an index into an array.
+
+ >>> x = np.arange(20).reshape(5, 4)
+ >>> row, col = np.indices((2, 3))
+ >>> x[row, col]
+ array([[0, 1, 2],
+ [4, 5, 6]])
+
+ Note that it would be more straightforward in the above example to
+ extract the required elements directly with ``x[:2, :3]``.
+
+ """
+ dimensions = tuple(dimensions)
+ N = len(dimensions)
+ if N == 0:
+ return array([],dtype=dtype)
+ res = empty((N,)+dimensions, dtype=dtype)
+ for i, dim in enumerate(dimensions):
+ tmp = arange(dim,dtype=dtype)
+ tmp.shape = (1,)*i + (dim,)+(1,)*(N-i-1)
+ newdim = dimensions[:i] + (1,)+ dimensions[i+1:]
+ val = zeros(newdim, dtype)
+ add(tmp, val, res[i])
+ return res
+
+def fromfunction(function, shape, **kwargs):
+ """
+ Construct an array by executing a function over each coordinate.
+
+ The resulting array therefore has a value ``fn(x, y, z)`` at
+ coordinate ``(x, y, z)``.
+
+ Parameters
+ ----------
+ fn : callable
+ The function is called with N parameters, each of which
+ represents the coordinates of the array varying along a
+ specific axis. For example, if `shape` were ``(2, 2)``, then
+ the parameters would be two arrays, ``[[0, 0], [1, 1]]`` and
+ ``[[0, 1], [0, 1]]``. `fn` must be capable of operating on
+ arrays, and should return a scalar value.
+ shape : (N,) tuple of ints
+ Shape of the output array, which also determines the shape of
+ the coordinate arrays passed to `fn`.
+ dtype : data-type, optional
+ Data-type of the coordinate arrays passed to `fn`. By default,
+ `dtype` is float.
+
+ See Also
+ --------
+ indices, meshgrid
+
+ Notes
+ -----
+ Keywords other than `shape` and `dtype` are passed to the function.
+
+ Examples
+ --------
+ >>> np.fromfunction(lambda i, j: i == j, (3, 3), dtype=int)
+ array([[ True, False, False],
+ [False, True, False],
+ [False, False, True]], dtype=bool)
+
+ >>> np.fromfunction(lambda i, j: i + j, (3, 3), dtype=int)
+ array([[0, 1, 2],
+ [1, 2, 3],
+ [2, 3, 4]])
+
+ """
+ dtype = kwargs.pop('dtype', float)
+ args = indices(shape, dtype=dtype)
+ return function(*args,**kwargs)
+
+def isscalar(num):
+ """
+ Returns True if the type of `num` is a scalar type.
+
+ Parameters
+ ----------
+ num : any
+ Input argument, can be of any type and shape.
+
+ Returns
+ -------
+ val : bool
+ True if `num` is a scalar type, False if it is not.
+
+ Examples
+ --------
+ >>> np.isscalar(3.1)
+ True
+ >>> np.isscalar([3.1])
+ False
+ >>> np.isscalar(False)
+ True
+
+ """
+ if isinstance(num, generic):
+ return True
+ else:
+ return type(num) in ScalarType
+
+_lkup = {
+ '0':'0000',
+ '1':'0001',
+ '2':'0010',
+ '3':'0011',
+ '4':'0100',
+ '5':'0101',
+ '6':'0110',
+ '7':'0111',
+ '8':'1000',
+ '9':'1001',
+ 'a':'1010',
+ 'b':'1011',
+ 'c':'1100',
+ 'd':'1101',
+ 'e':'1110',
+ 'f':'1111',
+ 'A':'1010',
+ 'B':'1011',
+ 'C':'1100',
+ 'D':'1101',
+ 'E':'1110',
+ 'F':'1111',
+ 'L':''}
+
+def binary_repr(num, width=None):
+ """
+ Return the binary representation of the input number as a string.
+
+ For negative numbers, if width is not given, a minus sign is added to the
+ front. If width is given, the two's complement of the number is
+ returned, with respect to that width.
+
+ In a two's-complement system negative numbers are represented by the two's
+ complement of the absolute value. This is the most common method of
+ representing signed integers on computers [1]_. A N-bit two's-complement
+ system can represent every integer in the range
+ :math:`-2^{N-1}` to :math:`+2^{N-1}-1`.
+
+ Parameters
+ ----------
+ num : int
+ Only an integer decimal number can be used.
+ width : int, optional
+ The length of the returned string if `num` is positive, the length of
+ the two's complement if `num` is negative.
+
+ Returns
+ -------
+ bin : str
+ Binary representation of `num` or two's complement of `num`.
+
+ See Also
+ --------
+ base_repr: Return a string representation of a number in the given base
+ system.
+
+ Notes
+ -----
+ `binary_repr` is equivalent to using `base_repr` with base 2, but about 25x
+ faster.
+
+ References
+ ----------
+ .. [1] Wikipedia, "Two's complement",
+ http://en.wikipedia.org/wiki/Two's_complement
+
+ Examples
+ --------
+ >>> np.binary_repr(3)
+ '11'
+ >>> np.binary_repr(-3)
+ '-11'
+ >>> np.binary_repr(3, width=4)
+ '0011'
+
+ The two's complement is returned when the input number is negative and
+ width is specified:
+
+ >>> np.binary_repr(-3, width=4)
+ '1101'
+
+ """
+ sign = ''
+ if num < 0:
+ if width is None:
+ sign = '-'
+ num = -num
+ else:
+ # replace num with its 2-complement
+ num = 2**width + num
+ elif num == 0:
+ return '0'*(width or 1)
+ ostr = hex(num)
+ bin = ''.join([_lkup[ch] for ch in ostr[2:]])
+ bin = bin.lstrip('0')
+ if width is not None:
+ bin = bin.zfill(width)
+ return sign + bin
+
+def base_repr (number, base=2, padding=0):
+ """
+ Return a string representation of a number in the given base system.
+
+ Parameters
+ ----------
+ number : scalar
+ The value to convert. Only positive values are handled.
+ base : int
+ Convert `number` to the `base` number system. The valid range is 2-36,
+ the default value is 2.
+ padding : int, optional
+ Number of zeros padded on the left.
+
+ Returns
+ -------
+ out : str
+ String representation of `number` in `base` system.
+
+ See Also
+ --------
+ binary_repr : Faster version of `base_repr` for base 2 that also handles
+ negative numbers.
+
+ Examples
+ --------
+ >>> np.base_repr(3, 5)
+ '3'
+ >>> np.base_repr(6, 5)
+ '11'
+ >>> np.base_repr(7, base=5, padding=3)
+ '00012'
+
+ """
+ if number < 0:
+ raise ValueError("negative numbers not handled in base_repr")
+ if base > 36:
+ raise ValueError("bases greater than 36 not handled in base_repr")
+
+ chars = '0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+ import math
+ lnb = math.log(base)
+ res = padding*chars[0]
+ if number == 0:
+ return res + chars[0]
+ exponent = int (math.log (number)/lnb)
+ while(exponent >= 0):
+ term = long(base)**exponent
+ lead_digit = int(number / term)
+ res += chars[lead_digit]
+ number -= term*lead_digit
+ exponent -= 1
+ return res
+
+from cPickle import load, loads
+_cload = load
+_file = file
+
+def load(file):
+ """Wrapper around cPickle.load which accepts either a file-like object or
+ a filename.
+ """
+ if isinstance(file, type("")):
+ file = _file(file,"rb")
+ return _cload(file)
+
+# These are all essentially abbreviations
+# These might wind up in a special abbreviations module
+
+def _maketup(descr, val):
+ dt = dtype(descr)
+ # Place val in all scalar tuples:
+ fields = dt.fields
+ if fields is None:
+ return val
+ else:
+ res = [_maketup(fields[name][0],val) for name in dt.names]
+ return tuple(res)
+
+def ones(shape, dtype=None, order='C'):
+ """
+ Return a new array of given shape and type, filled with ones.
+
+ Please refer to the documentation for `zeros`.
+
+ See Also
+ --------
+ zeros
+
+ Examples
+ --------
+ >>> np.ones(5)
+ array([ 1., 1., 1., 1., 1.])
+
+ >>> np.ones((5,), dtype=np.int)
+ array([1, 1, 1, 1, 1])
+
+ >>> np.ones((2, 1))
+ array([[ 1.],
+ [ 1.]])
+
+ >>> s = (2,2)
+ >>> np.ones(s)
+ array([[ 1., 1.],
+ [ 1., 1.]])
+
+ """
+ a = empty(shape, dtype, order)
+ try:
+ a.fill(1)
+ # Above is faster now after addition of fast loops.
+ #a = zeros(shape, dtype, order)
+ #a+=1
+ except TypeError:
+ obj = _maketup(dtype, 1)
+ a.fill(obj)
+ return a
+
+def identity(n, dtype=None):
+ """
+ Return the identity array.
+
+ The identity array is a square array with ones on
+ the main diagonal.
+
+ Parameters
+ ----------
+ n : int
+ Number of rows (and columns) in `n` x `n` output.
+ dtype : data-type, optional
+ Data-type of the output. Defaults to ``float``.
+
+ Returns
+ -------
+ out : ndarray
+ `n` x `n` array with its main diagonal set to one,
+ and all other elements 0.
+
+ Examples
+ --------
+ >>> np.identity(3)
+ array([[ 1., 0., 0.],
+ [ 0., 1., 0.],
+ [ 0., 0., 1.]])
+
+ """
+ a = zeros((n,n), dtype=dtype)
+ a.flat[::n+1] = 1
+ return a
+
+def allclose(a, b, rtol=1.e-5, atol=1.e-8):
+ """
+ Returns True if two arrays are element-wise equal within a tolerance.
+
+ The tolerance values are positive, typically very small numbers. The
+ relative difference (`rtol` * abs(`b`)) and the absolute difference
+ `atol` are added together to compare against the absolute difference
+ between `a` and `b`.
+
+ Parameters
+ ----------
+ a, b : array_like
+ Input arrays to compare.
+ rtol : float
+ The relative tolerance parameter (see Notes).
+ atol : float
+ The absolute tolerance parameter (see Notes).
+
+ Returns
+ -------
+ y : bool
+ Returns True if the two arrays are equal within the given
+ tolerance; False otherwise. If either array contains NaN, then
+ False is returned.
+
+ See Also
+ --------
+ all, any, alltrue, sometrue
+
+ Notes
+ -----
+ If the following equation is element-wise True, then allclose returns
+ True.
+
+ absolute(`a` - `b`) <= (`atol` + `rtol` * absolute(`b`))
+
+ Examples
+ --------
+ >>> np.allclose([1e10,1e-7], [1.00001e10,1e-8])
+ False
+ >>> np.allclose([1e10,1e-8], [1.00001e10,1e-9])
+ True
+ >>> np.allclose([1e10,1e-8], [1.0001e10,1e-9])
+ False
+ >>> np.allclose([1.0, np.nan], [1.0, np.nan])
+ False
+
+ """
+ x = array(a, copy=False)
+ y = array(b, copy=False)
+ xinf = isinf(x)
+ if not all(xinf == isinf(y)):
+ return False
+ if not any(xinf):
+ return all(less_equal(absolute(x-y), atol + rtol * absolute(y)))
+ if not all(x[xinf] == y[xinf]):
+ return False
+ x = x[~xinf]
+ y = y[~xinf]
+ return all(less_equal(absolute(x-y), atol + rtol * absolute(y)))
+
+def array_equal(a1, a2):
+ """
+ True if two arrays have the same shape and elements, False otherwise.
+
+ Parameters
+ ----------
+ a1, a2 : array_like
+ Input arrays.
+
+ Returns
+ -------
+ b : bool
+ Returns True if the arrays are equal.
+
+ See Also
+ --------
+ allclose: Returns True if two arrays are element-wise equal within a
+ tolerance.
+ array_equiv: Returns True if input arrays are shape consistent and all
+ elements equal.
+
+ Examples
+ --------
+ >>> np.array_equal([1, 2], [1, 2])
+ True
+ >>> np.array_equal(np.array([1, 2]), np.array([1, 2]))
+ True
+ >>> np.array_equal([1, 2], [1, 2, 3])
+ False
+ >>> np.array_equal([1, 2], [1, 4])
+ False
+
+ """
+ try:
+ a1, a2 = asarray(a1), asarray(a2)
+ except:
+ return False
+ if a1.shape != a2.shape:
+ return False
+ return bool(logical_and.reduce(equal(a1,a2).ravel()))
+
+def array_equiv(a1, a2):
+ """
+ Returns True if input arrays are shape consistent and all elements equal.
+
+ Shape consistent means they are either the same shape, or one input array
+ can be broadcasted to create the same shape as the other one.
+
+ Parameters
+ ----------
+ a1, a2 : array_like
+ Input arrays.
+
+ Returns
+ -------
+ out : bool
+ True if equivalent, False otherwise.
+
+ Examples
+ --------
+ >>> np.array_equiv([1, 2], [1, 2])
+ >>> True
+ >>> np.array_equiv([1, 2], [1, 3])
+ >>> False
+
+ Showing the shape equivalence:
+
+ >>> np.array_equiv([1, 2], [[1, 2], [1, 2]])
+ >>> True
+ >>> np.array_equiv([1, 2], [[1, 2, 1, 2], [1, 2, 1, 2]])
+ >>> False
+
+ >>> np.array_equiv([1, 2], [[1, 2], [1, 3]])
+ >>> False
+
+ """
+ try:
+ a1, a2 = asarray(a1), asarray(a2)
+ except:
+ return False
+ try:
+ return bool(logical_and.reduce(equal(a1,a2).ravel()))
+ except ValueError:
+ return False
+
+
+_errdict = {"ignore":ERR_IGNORE,
+ "warn":ERR_WARN,
+ "raise":ERR_RAISE,
+ "call":ERR_CALL,
+ "print":ERR_PRINT,
+ "log":ERR_LOG}
+
+_errdict_rev = {}
+for key in _errdict.keys():
+ _errdict_rev[_errdict[key]] = key
+del key
+
+def seterr(all=None, divide=None, over=None, under=None, invalid=None):
+ """
+ Set how floating-point errors are handled.
+
+ Note that operations on integer scalar types (such as `int16`) are
+ handled like floating point, and are affected by these settings.
+
+ Parameters
+ ----------
+ all : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
+ Set treatment for all types of floating-point errors at once:
+
+ - ignore: Take no action when the exception occurs.
+ - warn: Print a `RuntimeWarning` (via the Python `warnings` module).
+ - raise: Raise a `FloatingPointError`.
+ - call: Call a function specified using the `seterrcall` function.
+ - print: Print a warning directly to ``stdout``.
+ - log: Record error in a Log object specified by `seterrcall`.
+
+ The default is not to change the current behavior.
+ divide : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
+ Treatment for division by zero.
+ over : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
+ Treatment for floating-point overflow.
+ under : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
+ Treatment for floating-point underflow.
+ invalid : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
+ Treatment for invalid floating-point operation.
+
+ Returns
+ -------
+ old_settings : dict
+ Dictionary containing the old settings.
+
+ See also
+ --------
+ seterrcall : set a callback function for the 'call' mode.
+ geterr, geterrcall
+
+ Notes
+ -----
+ The floating-point exceptions are defined in the IEEE 754 standard [1]:
+
+ - Division by zero: infinite result obtained from finite numbers.
+ - Overflow: result too large to be expressed.
+ - Underflow: result so close to zero that some precision
+ was lost.
+ - Invalid operation: result is not an expressible number, typically
+ indicates that a NaN was produced.
+
+ .. [1] http://en.wikipedia.org/wiki/IEEE_754
+
+ Examples
+ --------
+ >>> np.seterr(over='raise')
+ {'over': 'ignore', 'divide': 'ignore', 'invalid': 'ignore',
+ 'under': 'ignore'}
+ >>> np.seterr(all='ignore') # reset to default
+ {'over': 'raise', 'divide': 'warn', 'invalid': 'warn', 'under': 'warn'}
+
+ >>> np.int16(32000) * np.int16(3)
+ 30464
+ >>> old_settings = np.seterr(all='warn', over='raise')
+ >>> np.int16(32000) * np.int16(3)
+ Traceback (most recent call last):
+ File "<stdin>", line 1, in <module>
+ FloatingPointError: overflow encountered in short_scalars
+
+ >>> np.seterr(all='print')
+ {'over': 'print', 'divide': 'print', 'invalid': 'print', 'under': 'print'}
+ >>> np.int16(32000) * np.int16(3)
+ Warning: overflow encountered in short_scalars
+ 30464
+
+ """
+
+ pyvals = umath.geterrobj()
+ old = geterr()
+
+ if divide is None: divide = all or old['divide']
+ if over is None: over = all or old['over']
+ if under is None: under = all or old['under']
+ if invalid is None: invalid = all or old['invalid']
+
+ maskvalue = ((_errdict[divide] << SHIFT_DIVIDEBYZERO) +
+ (_errdict[over] << SHIFT_OVERFLOW ) +
+ (_errdict[under] << SHIFT_UNDERFLOW) +
+ (_errdict[invalid] << SHIFT_INVALID))
+
+ pyvals[1] = maskvalue
+ umath.seterrobj(pyvals)
+ return old
+
+
+def geterr():
+ """
+ Get the current way of handling floating-point errors.
+
+ Returns
+ -------
+ res : dict
+ A dictionary with keys "divide", "over", "under", and "invalid",
+ whose values are from the strings "ignore", "print", "log", "warn",
+ "raise", and "call". The keys represent possible floating-point
+ exceptions, and the values define how these exceptions are handled.
+
+ See Also
+ --------
+ geterrcall, seterr, seterrcall
+
+ Notes
+ -----
+ For complete documentation of the types of floating-point exceptions and
+ treatment options, see `seterr`.
+
+ Examples
+ --------
+ >>> np.geterr() # default is all set to 'ignore'
+ {'over': 'ignore', 'divide': 'ignore', 'invalid': 'ignore',
+ 'under': 'ignore'}
+ >>> np.arange(3.) / np.arange(3.)
+ array([ NaN, 1., 1.])
+
+ >>> oldsettings = np.seterr(all='warn', over='raise')
+ >>> np.geterr()
+ {'over': 'raise', 'divide': 'warn', 'invalid': 'warn', 'under': 'warn'}
+ >>> np.arange(3.) / np.arange(3.)
+ __main__:1: RuntimeWarning: invalid value encountered in divide
+ array([ NaN, 1., 1.])
+
+ """
+ maskvalue = umath.geterrobj()[1]
+ mask = 7
+ res = {}
+ val = (maskvalue >> SHIFT_DIVIDEBYZERO) & mask
+ res['divide'] = _errdict_rev[val]
+ val = (maskvalue >> SHIFT_OVERFLOW) & mask
+ res['over'] = _errdict_rev[val]
+ val = (maskvalue >> SHIFT_UNDERFLOW) & mask
+ res['under'] = _errdict_rev[val]
+ val = (maskvalue >> SHIFT_INVALID) & mask
+ res['invalid'] = _errdict_rev[val]
+ return res
+
+def setbufsize(size):
+ """
+ Set the size of the buffer used in ufuncs.
+
+ Parameters
+ ----------
+ size : int
+ Size of buffer.
+
+ """
+ if size > 10e6:
+ raise ValueError, "Buffer size, %s, is too big." % size
+ if size < 5:
+ raise ValueError, "Buffer size, %s, is too small." %size
+ if size % 16 != 0:
+ raise ValueError, "Buffer size, %s, is not a multiple of 16." %size
+
+ pyvals = umath.geterrobj()
+ old = getbufsize()
+ pyvals[0] = size
+ umath.seterrobj(pyvals)
+ return old
+
+def getbufsize():
+ """Return the size of the buffer used in ufuncs.
+ """
+ return umath.geterrobj()[0]
+
+def seterrcall(func):
+ """
+ Set the floating-point error callback function or log object.
+
+ There are two ways to capture floating-point error messages. The first
+ is to set the error-handler to 'call', using `seterr`. Then, set
+ the function to call using this function.
+
+ The second is to set the error-handler to 'log', using `seterr`.
+ Floating-point errors then trigger a call to the 'write' method of
+ the provided object.
+
+ Parameters
+ ----------
+ func : callable f(err, flag) or object with write method
+ Function to call upon floating-point errors ('call'-mode) or
+ object whose 'write' method is used to log such message ('log'-mode).
+
+ The call function takes two arguments. The first is the
+ type of error (one of "divide", "over", "under", or "invalid"),
+ and the second is the status flag. The flag is a byte, whose
+ least-significant bits indicate the status::
+
+ [0 0 0 0 invalid over under invalid]
+
+ In other words, ``flags = divide + 2*over + 4*under + 8*invalid``.
+
+ If an object is provided, its write method should take one argument,
+ a string.
+
+ Returns
+ -------
+ h : callable or log instance
+ The old error handler.
+
+ See Also
+ --------
+ seterr, geterr, geterrcall
+
+ Examples
+ --------
+ Callback upon error:
+
+ >>> def err_handler(type, flag):
+ print "Floating point error (%s), with flag %s" % (type, flag)
+ ...
+
+ >>> saved_handler = np.seterrcall(err_handler)
+ >>> save_err = np.seterr(all='call')
+
+ >>> np.array([1,2,3])/0.0
+ Floating point error (divide by zero), with flag 1
+ array([ Inf, Inf, Inf])
+
+ >>> np.seterrcall(saved_handler)
+ >>> np.seterr(**save_err)
+
+ Log error message:
+
+ >>> class Log(object):
+ def write(self, msg):
+ print "LOG: %s" % msg
+ ...
+
+ >>> log = Log()
+ >>> saved_handler = np.seterrcall(log)
+ >>> save_err = np.seterr(all='log')
+
+ >>> np.array([1,2,3])/0.0
+ LOG: Warning: divide by zero encountered in divide
+
+ >>> np.seterrcall(saved_handler)
+ >>> np.seterr(**save_err)
+
+ """
+ if func is not None and not callable(func):
+ if not hasattr(func, 'write') or not callable(func.write):
+ raise ValueError, "Only callable can be used as callback"
+ pyvals = umath.geterrobj()
+ old = geterrcall()
+ pyvals[2] = func
+ umath.seterrobj(pyvals)
+ return old
+
+def geterrcall():
+ """
+ Return the current callback function used on floating-point errors.
+
+ When the error handling for a floating-point error (one of "divide",
+ "over", "under", or "invalid") is set to 'call' or 'log', the function
+ that is called or the log instance that is written to is returned by
+ `geterrcall`. This function or log instance has been set with
+ `seterrcall`.
+
+ Returns
+ -------
+ errobj : callable, log instance or None
+ The current error handler. If no handler was set through `seterrcall`,
+ ``None`` is returned.
+
+ See Also
+ --------
+ seterrcall, seterr, geterr
+
+ Notes
+ -----
+ For complete documentation of the types of floating-point exceptions and
+ treatment options, see `seterr`.
+
+ Examples
+ --------
+ >>> np.geterrcall() # we did not yet set a handler, returns None
+
+ >>> oldsettings = np.seterr(all='call')
+ >>> def err_handler(type, flag):
+ ... print "Floating point error (%s), with flag %s" % (type, flag)
+ >>> oldhandler = np.seterrcall(err_handler)
+ >>> np.array([1,2,3])/0.0
+ Floating point error (divide by zero), with flag 1
+ array([ Inf, Inf, Inf])
+ >>> cur_handler = np.geterrcall()
+ >>> cur_handler is err_handler
+ True
+
+ """
+ return umath.geterrobj()[2]
+
+class _unspecified(object):
+ pass
+_Unspecified = _unspecified()
+
+class errstate(object):
+ """with errstate(**state): --> operations in following block use given state.
+
+ # Set error handling to known state.
+ >>> _ = np.seterr(invalid='raise', divide='raise', over='raise',
+ ... under='ignore')
+
+ >>> a = -np.arange(3)
+ >>> with np.errstate(invalid='ignore'): # doctest: +SKIP
+ ... print np.sqrt(a) # with statement requires Python 2.5
+ [ 0. -1.#IND -1.#IND]
+ >>> print np.sqrt(a.astype(complex))
+ [ 0.+0.j 0.+1.j 0.+1.41421356j]
+ >>> print np.sqrt(a)
+ Traceback (most recent call last):
+ ...
+ FloatingPointError: invalid value encountered in sqrt
+ >>> with np.errstate(divide='ignore'): # doctest: +SKIP
+ ... print a/0
+ [0 0 0]
+ >>> print a/0
+ Traceback (most recent call last):
+ ...
+ FloatingPointError: divide by zero encountered in divide
+
+ """
+ # Note that we don't want to run the above doctests because they will fail
+ # without a from __future__ import with_statement
+ def __init__(self, **kwargs):
+ self.call = kwargs.pop('call',_Unspecified)
+ self.kwargs = kwargs
+ def __enter__(self):
+ self.oldstate = seterr(**self.kwargs)
+ if self.call is not _Unspecified:
+ self.oldcall = seterrcall(self.call)
+ def __exit__(self, *exc_info):
+ seterr(**self.oldstate)
+ if self.call is not _Unspecified:
+ seterrcall(self.oldcall)
+
+def _setdef():
+ defval = [UFUNC_BUFSIZE_DEFAULT, ERR_DEFAULT2, None]
+ umath.seterrobj(defval)
+
+# set the default values
+_setdef()
+
+Inf = inf = infty = Infinity = PINF
+nan = NaN = NAN
+False_ = bool_(False)
+True_ = bool_(True)
+
+import fromnumeric
+from fromnumeric import *
+extend_all(fromnumeric)
diff --git a/cobra/oven/danielhyduke/jython/numpy/core/numerictypes.py b/cobra/oven/danielhyduke/jython/numpy/core/numerictypes.py
new file mode 100755
index 0000000..f8683ba
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/numpy/core/numerictypes.py
@@ -0,0 +1,734 @@
+#TODO: convert this to use the cern.colt types.
+"""numerictypes: Define the numeric type objects
+
+This module is designed so 'from numerictypes import *' is safe.
+Exported symbols include:
+
+ Dictionary with all registered number types (including aliases):
+ typeDict
+
+ Type objects (not all will be available, depends on platform):
+ see variable sctypes for which ones you have
+
+ Bit-width names
+
+ int8 int16 int32 int64 int128
+ uint8 uint16 uint32 uint64 uint128
+ float16 float32 float64 float96 float128 float256
+ complex32 complex64 complex128 complex192 complex256 complex512
+ datetime64 timedelta64
+
+ c-based names
+
+ bool_
+
+ object_
+
+ void, str_, unicode_
+
+ byte, ubyte,
+ short, ushort
+ intc, uintc,
+ intp, uintp,
+ int_, uint,
+ longlong, ulonglong,
+
+
+ single, csingle,
+ float_, complex_,
+ longfloat, clongfloat,
+
+ datetime, timedelta, (these inherit from timeinteger which inherits from signedinteger)
+
+
+ As part of the type-hierarchy: xx -- is bit-width
+
+ generic
+ +-> bool_ (kind=b)
+ +-> number (kind=i)
+ | integer
+ | signedinteger (intxx)
+ | byte
+ | short
+ | intc
+ | intp int0
+ | int_
+ | longlong
+ +-> unsignedinteger (uintxx) (kind=u)
+ | ubyte
+ | ushort
+ | uintc
+ | uintp uint0
+ | uint_
+ | ulonglong
+ +-> inexact
+ | +-> floating (floatxx) (kind=f)
+ | | single
+ | | float_ (double)
+ | | longfloat
+ | \-> complexfloating (complexxx) (kind=c)
+ | csingle (singlecomplex)
+ | complex_ (cfloat, cdouble)
+ | clongfloat (longcomplex)
+ +-> flexible
+ | character
+ | str_ (string_) (kind=S)
+ | unicode_ (kind=U)
+ | void (kind=V)
+ |
+ \-> object_ (not used much) (kind=O)
+"""
+
+# we add more at the bottom
+__all__ = ['sctypeDict', 'sctypeNA', 'typeDict', 'typeNA', 'sctypes',
+ 'ScalarType', 'obj2sctype', 'cast', 'nbytes', 'sctype2char',
+ 'maximum_sctype', 'issctype', 'typecodes', 'find_common_type']
+
+#from numpy.core.multiarray import typeinfo, ndarray, array, empty, dtype
+
+#TODO: Create these items and import them correctly
+
+import types as _types
+
+# we don't export these for import *, but we do want them accessible
+# as numerictypes.bool, etc.
+from __builtin__ import bool, int, long, float, complex, object, unicode, str
+
+# String-handling utilities to avoid locale-dependence.
+
+# "import string" is costly to import!
+# Construct the translation tables directly
+# "A" = chr(65), "a" = chr(97)
+_all_chars = map(chr, range(256))
+_ascii_upper = _all_chars[65:65+26]
+_ascii_lower = _all_chars[97:97+26]
+LOWER_TABLE="".join(_all_chars[:65] + _ascii_lower + _all_chars[65+26:])
+UPPER_TABLE="".join(_all_chars[:97] + _ascii_upper + _all_chars[97+26:])
+
+#import string
+# assert (string.maketrans(string.ascii_uppercase, string.ascii_lowercase) == \
+# LOWER_TABLE)
+# assert (string.maketrnas(string_ascii_lowercase, string.ascii_uppercase) == \
+# UPPER_TABLE)
+#LOWER_TABLE = string.maketrans(string.ascii_uppercase, string.ascii_lowercase)
+#UPPER_TABLE = string.maketrans(string.ascii_lowercase, string.ascii_uppercase)
+
+def english_lower(s):
+ """ Apply English case rules to convert ASCII strings to all lower case.
+
+ This is an internal utility function to replace calls to str.lower() such
+ that we can avoid changing behavior with changing locales. In particular,
+ Turkish has distinct dotted and dotless variants of the Latin letter "I" in
+ both lowercase and uppercase. Thus, "I".lower() != "i" in a "tr" locale.
+
+ Parameters
+ ----------
+ s : str
+
+ Returns
+ -------
+ lowered : str
+
+ Examples
+ --------
+ >>> from numpy.core.numerictypes import english_lower
+ >>> english_lower('ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789_')
+ 'abcdefghijklmnopqrstuvwxyzabcdefghijklmnopqrstuvwxyz0123456789_'
+ >>> english_lower('')
+ ''
+ """
+ lowered = s.translate(LOWER_TABLE)
+ return lowered
+
+def english_upper(s):
+ """ Apply English case rules to convert ASCII strings to all upper case.
+
+ This is an internal utility function to replace calls to str.upper() such
+ that we can avoid changing behavior with changing locales. In particular,
+ Turkish has distinct dotted and dotless variants of the Latin letter "I" in
+ both lowercase and uppercase. Thus, "i".upper() != "I" in a "tr" locale.
+
+ Parameters
+ ----------
+ s : str
+
+ Returns
+ -------
+ uppered : str
+
+ Examples
+ --------
+ >>> from numpy.core.numerictypes import english_upper
+ >>> english_upper('ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789_')
+ 'ABCDEFGHIJKLMNOPQRSTUVWXYZABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_'
+ >>> english_upper('')
+ ''
+ """
+ uppered = s.translate(UPPER_TABLE)
+ return uppered
+
+def english_capitalize(s):
+ """ Apply English case rules to convert the first character of an ASCII
+ string to upper case.
+
+ This is an internal utility function to replace calls to str.capitalize()
+ such that we can avoid changing behavior with changing locales.
+
+ Parameters
+ ----------
+ s : str
+
+ Returns
+ -------
+ capitalized : str
+
+ Examples
+ --------
+ >>> from numpy.core.numerictypes import english_capitalize
+ >>> english_capitalize('int8')
+ 'Int8'
+ >>> english_capitalize('Int8')
+ 'Int8'
+ >>> english_capitalize('')
+ ''
+ """
+ if s:
+ return english_upper(s[0]) + s[1:]
+ else:
+ return s
+
+
+sctypeDict = {} # Contains all leaf-node scalar types with aliases
+sctypeNA = {} # Contails all leaf-node types -> numarray type equivalences
+allTypes = {} # Collect the types we will add to the module here
+
+def _evalname(name):
+ k = 0
+ for ch in name:
+ if ch in '0123456789':
+ break
+ k += 1
+ try:
+ bits = int(name[k:])
+ except ValueError:
+ bits = 0
+ base = name[:k]
+ return base, bits
+
+def bitname(obj):
+ """Return a bit-width name for a given type object"""
+ name = obj.__name__
+ base = ''
+ char = ''
+ try:
+ if name[-1] == '_':
+ newname = name[:-1]
+ else:
+ newname = name
+ info = typeinfo[english_upper(newname)]
+ assert(info[-1] == obj) # sanity check
+ bits = info[2]
+
+ except KeyError: # bit-width name
+ base, bits = _evalname(name)
+ char = base[0]
+
+ if name == 'bool_':
+ char = 'b'
+ base = 'bool'
+ elif name=='string_':
+ char = 'S'
+ base = 'string'
+ elif name=='unicode_':
+ char = 'U'
+ base = 'unicode'
+ elif name=='void':
+ char = 'V'
+ base = 'void'
+ elif name=='object_':
+ char = 'O'
+ base = 'object'
+ bits = 0
+
+ bytes = bits / 8
+
+ if char != '' and bytes != 0:
+ char = "%s%d" % (char, bytes)
+
+ return base, bits, char
+
+
+def _add_types():
+ for a in typeinfo.keys():
+ name = english_lower(a)
+ if isinstance(typeinfo[a], tuple):
+ typeobj = typeinfo[a][-1]
+
+ # define C-name and insert typenum and typechar references also
+ allTypes[name] = typeobj
+ sctypeDict[name] = typeobj
+ sctypeDict[typeinfo[a][0]] = typeobj
+ sctypeDict[typeinfo[a][1]] = typeobj
+
+ else: # generic class
+ allTypes[name] = typeinfo[a]
+_add_types()
+
+def _add_aliases():
+ for a in typeinfo.keys():
+ name = english_lower(a)
+ if not isinstance(typeinfo[a], tuple):
+ continue
+ typeobj = typeinfo[a][-1]
+ # insert bit-width version for this class (if relevant)
+ base, bit, char = bitname(typeobj)
+ if base[-3:] == 'int' or char[0] in 'ui': continue
+ if base != '':
+ myname = "%s%d" % (base, bit)
+ if (name != 'longdouble' and name != 'clongdouble') or \
+ myname not in allTypes.keys():
+ allTypes[myname] = typeobj
+ sctypeDict[myname] = typeobj
+ if base == 'complex':
+ na_name = '%s%d' % (english_capitalize(base), bit/2)
+ elif base == 'bool':
+ na_name = english_capitalize(base)
+ sctypeDict[na_name] = typeobj
+ else:
+ na_name = "%s%d" % (english_capitalize(base), bit)
+ sctypeDict[na_name] = typeobj
+ sctypeNA[na_name] = typeobj
+ sctypeDict[na_name] = typeobj
+ sctypeNA[typeobj] = na_name
+ sctypeNA[typeinfo[a][0]] = na_name
+ if char != '':
+ sctypeDict[char] = typeobj
+ sctypeNA[char] = na_name
+_add_aliases()
+
+# Integers handled so that
+# The int32, int64 types should agree exactly with
+# PyArray_INT32, PyArray_INT64 in C
+# We need to enforce the same checking as is done
+# in arrayobject.h where the order of getting a
+# bit-width match is:
+# long, longlong, int, short, char
+# for int8, int16, int32, int64, int128
+
+def _add_integer_aliases():
+ _ctypes = ['LONG', 'LONGLONG', 'INT', 'SHORT', 'BYTE']
+ for ctype in _ctypes:
+ val = typeinfo[ctype]
+ bits = val[2]
+ charname = 'i%d' % (bits/8,)
+ ucharname = 'u%d' % (bits/8,)
+ intname = 'int%d' % bits
+ UIntname = 'UInt%d' % bits
+ Intname = 'Int%d' % bits
+ uval = typeinfo['U'+ctype]
+ typeobj = val[-1]
+ utypeobj = uval[-1]
+ if intname not in allTypes.keys():
+ uintname = 'uint%d' % bits
+ allTypes[intname] = typeobj
+ allTypes[uintname] = utypeobj
+ sctypeDict[intname] = typeobj
+ sctypeDict[uintname] = utypeobj
+ sctypeDict[Intname] = typeobj
+ sctypeDict[UIntname] = utypeobj
+ sctypeDict[charname] = typeobj
+ sctypeDict[ucharname] = utypeobj
+ sctypeNA[Intname] = typeobj
+ sctypeNA[UIntname] = utypeobj
+ sctypeNA[charname] = typeobj
+ sctypeNA[ucharname] = utypeobj
+ sctypeNA[typeobj] = Intname
+ sctypeNA[utypeobj] = UIntname
+ sctypeNA[val[0]] = Intname
+ sctypeNA[uval[0]] = UIntname
+_add_integer_aliases()
+
+# We use these later
+void = allTypes['void']
+generic = allTypes['generic']
+
+#
+# Rework the Python names (so that float and complex and int are consistent
+# with Python usage)
+#
+def _set_up_aliases():
+ type_pairs = [('complex_', 'cdouble'),
+ ('int0', 'intp'),
+ ('uint0', 'uintp'),
+ ('single', 'float'),
+ ('csingle', 'cfloat'),
+ ('singlecomplex', 'cfloat'),
+ ('float_', 'double'),
+ ('intc', 'int'),
+ ('uintc', 'uint'),
+ ('int_', 'long'),
+ ('uint', 'ulong'),
+ ('cfloat', 'cdouble'),
+ ('longfloat', 'longdouble'),
+ ('clongfloat', 'clongdouble'),
+ ('longcomplex', 'clongdouble'),
+ ('bool_', 'bool'),
+ ('unicode_', 'unicode'),
+ ('str_', 'string'),
+ ('string_', 'string'),
+ ('object_', 'object')]
+ for alias, t in type_pairs:
+ allTypes[alias] = allTypes[t]
+ sctypeDict[alias] = sctypeDict[t]
+ # Remove aliases overriding python types and modules
+ for t in ['ulong', 'object', 'unicode', 'int', 'long', 'float',
+ 'complex', 'bool', 'string']:
+ try:
+ del allTypes[t]
+ del sctypeDict[t]
+ except KeyError:
+ pass
+_set_up_aliases()
+
+# Now, construct dictionary to lookup character codes from types
+_sctype2char_dict = {}
+def _construct_char_code_lookup():
+ for name in typeinfo.keys():
+ tup = typeinfo[name]
+ if isinstance(tup, tuple):
+ if tup[0] not in ['p','P']:
+ _sctype2char_dict[tup[-1]] = tup[0]
+_construct_char_code_lookup()
+
+
+sctypes = {'int': [],
+ 'uint':[],
+ 'float':[],
+ 'complex':[],
+ 'others':[bool,object,str,unicode,void]}
+
+def _add_array_type(typename, bits):
+ try:
+ t = allTypes['%s%d' % (typename, bits)]
+ except KeyError:
+ pass
+ else:
+ sctypes[typename].append(t)
+
+def _set_array_types():
+ ibytes = [1, 2, 4, 8, 16, 32, 64]
+ fbytes = [2, 4, 8, 10, 12, 16, 32, 64]
+ for bytes in ibytes:
+ bits = 8*bytes
+ _add_array_type('int', bits)
+ _add_array_type('uint', bits)
+ for bytes in fbytes:
+ bits = 8*bytes
+ _add_array_type('float', bits)
+ _add_array_type('complex', 2*bits)
+ _gi = dtype('p')
+ if _gi.type not in sctypes['int']:
+ indx = 0
+ sz = _gi.itemsize
+ _lst = sctypes['int']
+ while (indx < len(_lst) and sz >= _lst[indx](0).itemsize):
+ indx += 1
+ sctypes['int'].insert(indx, _gi.type)
+ sctypes['uint'].insert(indx, dtype('P').type)
+_set_array_types()
+
+
+genericTypeRank = ['bool', 'int8', 'uint8', 'int16', 'uint16',
+ 'int32', 'uint32', 'int64', 'uint64', 'int128',
+ 'uint128', 'float16',
+ 'float32', 'float64', 'float80', 'float96', 'float128',
+ 'float256',
+ 'complex32', 'complex64', 'complex128', 'complex160',
+ 'complex192', 'complex256', 'complex512', 'object']
+
+def maximum_sctype(t):
+ """returns the sctype of highest precision of the same general kind as 't'"""
+ g = obj2sctype(t)
+ if g is None:
+ return t
+ t = g
+ name = t.__name__
+ base, bits = _evalname(name)
+ if bits == 0:
+ return t
+ else:
+ return sctypes[base][-1]
+
+_python_types = {int : 'int_',
+ float: 'float_',
+ complex: 'complex_',
+ bool: 'bool_',
+ str: 'string_',
+ unicode: 'unicode_',
+ _types.BufferType: 'void',
+ }
+def _python_type(t):
+ """returns the type corresponding to a certain Python type"""
+ if not isinstance(t, _types.TypeType):
+ t = type(t)
+ return allTypes[_python_types.get(t, 'object_')]
+
+def issctype(rep):
+ """Determines whether the given object represents
+ a numeric array type."""
+ if not isinstance(rep, (type, dtype)):
+ return False
+ try:
+ res = obj2sctype(rep)
+ if res and res != object_:
+ return True
+ return False
+ except:
+ return False
+
+def obj2sctype(rep, default=None):
+ try:
+ if issubclass(rep, generic):
+ return rep
+ except TypeError:
+ pass
+ if isinstance(rep, dtype):
+ return rep.type
+ if isinstance(rep, type):
+ return _python_type(rep)
+ if isinstance(rep, ndarray):
+ return rep.dtype.type
+ try:
+ res = dtype(rep)
+ except:
+ return default
+ return res.type
+
+
+def issubclass_(arg1, arg2):
+ try:
+ return issubclass(arg1, arg2)
+ except TypeError:
+ return False
+
+def issubsctype(arg1, arg2):
+ return issubclass(obj2sctype(arg1), obj2sctype(arg2))
+
+def issubdtype(arg1, arg2):
+ """
+ Returns True if first argument is a typecode lower/equal in type hierarchy.
+
+ Parameters
+ ----------
+ arg1 : dtype_like
+ dtype or string representing a typecode.
+ arg2 : dtype_like
+ dtype or string representing a typecode.
+
+ Returns
+ -------
+ out : bool
+
+ See Also
+ --------
+ numpy.core.numerictypes : Overview of numpy type hierarchy.
+
+ Examples
+ --------
+ >>> np.issubdtype('S1', str)
+ True
+ >>> np.issubdtype(np.float64, np.float32)
+ False
+
+ """
+ if issubclass_(arg2, generic):
+ return issubclass(dtype(arg1).type, arg2)
+ mro = dtype(arg2).type.mro()
+ if len(mro) > 1:
+ val = mro[1]
+ else:
+ val = mro[0]
+ return issubclass(dtype(arg1).type, val)
+
+
+# This dictionary allows look up based on any alias for an array data-type
+class _typedict(dict):
+ def __getitem__(self, obj):
+ return dict.__getitem__(self, obj2sctype(obj))
+
+nbytes = _typedict()
+_alignment = _typedict()
+_maxvals = _typedict()
+_minvals = _typedict()
+def _construct_lookups():
+ for name, val in typeinfo.iteritems():
+ if not isinstance(val, tuple):
+ continue
+ obj = val[-1]
+ nbytes[obj] = val[2] / 8
+ _alignment[obj] = val[3]
+ if (len(val) > 5):
+ _maxvals[obj] = val[4]
+ _minvals[obj] = val[5]
+ else:
+ _maxvals[obj] = None
+ _minvals[obj] = None
+
+_construct_lookups()
+
+def sctype2char(sctype):
+ sctype = obj2sctype(sctype)
+ if sctype is None:
+ raise ValueError, "unrecognized type"
+ return _sctype2char_dict[sctype]
+
+# Create dictionary of casting functions that wrap sequences
+# indexed by type or type character
+
+
+cast = _typedict()
+ScalarType = [_types.IntType, _types.FloatType,
+ _types.ComplexType, _types.LongType, _types.BooleanType,
+ _types.StringType, _types.UnicodeType, _types.BufferType]
+ScalarType.extend(_sctype2char_dict.keys())
+ScalarType = tuple(ScalarType)
+for key in _sctype2char_dict.keys():
+ cast[key] = lambda x, k=key : array(x, copy=False).astype(k)
+
+# Create the typestring lookup dictionary
+_typestr = _typedict()
+for key in _sctype2char_dict.keys():
+ if issubclass(key, allTypes['flexible']):
+ _typestr[key] = _sctype2char_dict[key]
+ else:
+ _typestr[key] = empty((1,),key).dtype.str[1:]
+
+# Make sure all typestrings are in sctypeDict
+for key, val in _typestr.items():
+ if val not in sctypeDict:
+ sctypeDict[val] = key
+
+# Add additional strings to the sctypeDict
+
+_toadd = ['int', 'float', 'complex', 'bool', 'object', 'string', ('str', allTypes['string_']),
+ 'unicode', 'object', ('a', allTypes['string_'])]
+
+for name in _toadd:
+ if isinstance(name, tuple):
+ sctypeDict[name[0]] = name[1]
+ else:
+ sctypeDict[name] = allTypes['%s_' % name]
+
+del _toadd, name
+
+# Now add the types we've determined to this module
+for key in allTypes:
+ globals()[key] = allTypes[key]
+ __all__.append(key)
+
+del key
+
+typecodes = {'Character':'c',
+ 'Integer':'bhilqp',
+ 'UnsignedInteger':'BHILQP',
+ 'Float':'fdg',
+ 'Complex':'FDG',
+ 'AllInteger':'bBhHiIlLqQpP',
+ 'AllFloat':'fdgFDG',
+ 'Datetime': 'Mm',
+ 'All':'?bhilqpBHILQPfdgFDGSUVOMm'}
+
+# backwards compatibility --- deprecated name
+typeDict = sctypeDict
+typeNA = sctypeNA
+
+# b -> boolean
+# u -> unsigned integer
+# i -> signed integer
+# f -> floating point
+# c -> complex
+# M -> datetime
+# m -> timedelta
+# S -> string
+# U -> Unicode string
+# V -> record
+# O -> Python object
+_kind_list = ['b', 'u', 'i', 'f', 'c', 'S', 'U', 'V', 'O', 'M', 'm']
+
+__test_types = typecodes['AllInteger'][:-2]+typecodes['AllFloat']+'O'
+__len_test_types = len(__test_types)
+
+# Keep incrementing until a common type both can be coerced to
+# is found. Otherwise, return None
+def _find_common_coerce(a, b):
+ if a > b:
+ return a
+ try:
+ thisind = __test_types.index(a.char)
+ except ValueError:
+ return None
+ return _can_coerce_all([a,b], start=thisind)
+
+# Find a data-type that all data-types in a list can be coerced to
+def _can_coerce_all(dtypelist, start=0):
+ N = len(dtypelist)
+ if N == 0:
+ return None
+ if N == 1:
+ return dtypelist[0]
+ thisind = start
+ while thisind < __len_test_types:
+ newdtype = dtype(__test_types[thisind])
+ numcoerce = len([x for x in dtypelist if newdtype >= x])
+ if numcoerce == N:
+ return newdtype
+ thisind += 1
+ return None
+
+def find_common_type(array_types, scalar_types):
+ """
+ Determine common type following standard coercion rules
+
+ Parameters
+ ----------
+ array_types : sequence
+ A list of dtype convertible objects representing arrays
+ scalar_types : sequence
+ A list of dtype convertible objects representing scalars
+
+ Returns
+ -------
+ datatype : dtype
+ The common data-type which is the maximum of the array_types
+ ignoring the scalar_types unless the maximum of the scalar_types
+ is of a different kind.
+
+ If the kinds is not understood, then None is returned.
+
+ See Also
+ --------
+ dtype
+
+ """
+ array_types = [dtype(x) for x in array_types]
+ scalar_types = [dtype(x) for x in scalar_types]
+
+ maxa = _can_coerce_all(array_types)
+ maxsc = _can_coerce_all(scalar_types)
+
+ if maxa is None:
+ return maxsc
+
+ if maxsc is None:
+ return maxa
+
+ try:
+ index_a = _kind_list.index(maxa.kind)
+ index_sc = _kind_list.index(maxsc.kind)
+ except ValueError:
+ return None
+
+ if index_sc > index_a:
+ return _find_common_coerce(maxsc,maxa)
+ else:
+ return maxa
diff --git a/cobra/oven/danielhyduke/jython/scipy/README b/cobra/oven/danielhyduke/jython/scipy/README
new file mode 100644
index 0000000..22f7815
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/README
@@ -0,0 +1 @@
+In the future, we will be working on a scipy for java implementation that uses cern.colt matrices as the backend and provides a java interface that mirrors scipy.
diff --git a/cobra/oven/danielhyduke/jython/scipy/__init__.py b/cobra/oven/danielhyduke/jython/scipy/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/cobra/oven/danielhyduke/jython/scipy/sparse/__init__.py b/cobra/oven/danielhyduke/jython/scipy/sparse/__init__.py
new file mode 100644
index 0000000..6ea4aa3
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/sparse/__init__.py
@@ -0,0 +1,22 @@
+"Sparse Matrix Support"
+
+from info import __doc__
+
+from base import *
+from csr import *
+from csc import *
+from lil import *
+from dok import *
+from coo import *
+from dia import *
+from bsr import *
+
+from construct import *
+from extract import *
+
+#from spfuncs import *
+
+__all__ = filter(lambda s:not s.startswith('_'),dir())
+from numpy.testing import Tester
+test = Tester().test
+bench = Tester().bench
diff --git a/cobra/oven/danielhyduke/jython/scipy/sparse/base.py b/cobra/oven/danielhyduke/jython/scipy/sparse/base.py
new file mode 100644
index 0000000..cc9311a
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/sparse/base.py
@@ -0,0 +1,615 @@
+"""Base class for sparse matrices"""
+
+__all__ = ['spmatrix', 'isspmatrix', 'issparse',
+ 'SparseWarning','SparseEfficiencyWarning']
+
+from warnings import warn
+
+import numjy as np
+
+from sputils import isdense, isscalarlike, isintlike
+
+
+class SparseWarning(Warning): pass
+class SparseFormatWarning(SparseWarning): pass
+class SparseEfficiencyWarning(SparseWarning): pass
+
+
+# The formats that we might potentially understand.
+_formats = {'csc':[0, "Compressed Sparse Column"],
+ 'csr':[1, "Compressed Sparse Row"],
+ 'dok':[2, "Dictionary Of Keys"],
+ 'lil':[3, "LInked List"],
+ 'dod':[4, "Dictionary of Dictionaries"],
+ 'sss':[5, "Symmetric Sparse Skyline"],
+ 'coo':[6, "COOrdinate"],
+ 'lba':[7, "Linpack BAnded"],
+ 'egd':[8, "Ellpack-itpack Generalized Diagonal"],
+ 'dia':[9, "DIAgonal"],
+ 'bsr':[10, "Block Sparse Row"],
+ 'msr':[11, "Modified compressed Sparse Row"],
+ 'bsc':[12, "Block Sparse Column"],
+ 'msc':[13, "Modified compressed Sparse Column"],
+ 'ssk':[14, "Symmetric SKyline"],
+ 'nsk':[15, "Nonsymmetric SKyline"],
+ 'jad':[16, "JAgged Diagonal"],
+ 'uss':[17, "Unsymmetric Sparse Skyline"],
+ 'vbr':[18, "Variable Block Row"],
+ 'und':[19, "Undefined"]
+ }
+
+
+MAXPRINT = 50
+
+class spmatrix(object):
+ """ This class provides a base class for all sparse matrices. It
+ cannot be instantiated. Most of the work is provided by subclasses.
+ """
+
+ __array_priority__ = 10.1
+ ndim = 2
+ def __init__(self, maxprint=MAXPRINT):
+ self.format = self.__class__.__name__[:3]
+ self._shape = None
+ if self.format == 'spm':
+ raise ValueError, "This class is not intended" \
+ " to be instantiated directly."
+ self.maxprint = maxprint
+
+ def set_shape(self,shape):
+ shape = tuple(shape)
+
+ if len(shape) != 2:
+ raise ValueError("Only two-dimensional sparse arrays "
+ "are supported.")
+ try:
+ shape = int(shape[0]),int(shape[1]) #floats, other weirdness
+ except:
+ raise TypeError('invalid shape')
+
+ if not (shape[0] >= 1 and shape[1] >= 1):
+ raise ValueError('invalid shape')
+
+ if (self._shape != shape) and (self._shape is not None):
+ try:
+ self = self.reshape(shape)
+ except NotImplementedError:
+ raise NotImplementedError("Reshaping not implemented for %s." %
+ self.__class__.__name__)
+ self._shape = shape
+
+ def get_shape(self):
+ return self._shape
+
+ shape = property(fget=get_shape, fset=set_shape)
+
+ def reshape(self,shape):
+ raise NotImplementedError
+
+ def astype(self, t):
+ return self.tocsr().astype(t).asformat(self.format)
+
+ def asfptype(self):
+ """Upcast matrix to a floating point format (if necessary)"""
+
+ fp_types = ['f','d','F','D']
+
+ if self.dtype.char in fp_types:
+ return self
+ else:
+ for fp_type in fp_types:
+ if self.dtype <= np.dtype(fp_type):
+ return self.astype(fp_type)
+
+ raise TypeError,'cannot upcast [%s] to a floating \
+ point format' % self.dtype.name
+
+ def __iter__(self):
+ for r in xrange(self.shape[0]):
+ yield self[r,:]
+
+ def getmaxprint(self):
+ try:
+ maxprint = self.maxprint
+ except AttributeError:
+ maxprint = MAXPRINT
+ return maxprint
+
+ #def typecode(self):
+ # try:
+ # typ = self.dtype.char
+ # except AttributeError:
+ # typ = None
+ # return typ
+
+ def getnnz(self):
+ try:
+ return self.nnz
+ except AttributeError:
+ raise AttributeError, "nnz not defined"
+
+ def getformat(self):
+ try:
+ format = self.format
+ except AttributeError:
+ format = 'und'
+ return format
+
+ @np.deprecate
+ def rowcol(self, num):
+ return (None, None)
+
+ @np.deprecate
+ def getdata(self, num):
+ return None
+
+ @np.deprecate
+ def listprint(self, start, stop):
+ """Provides a way to print over a single index.
+ """
+ return '\n'.join([' %s\t%s' % (self.rowcol(ind), self.getdata(ind))
+ for ind in xrange(start,stop)]) + '\n'
+
+ def __repr__(self):
+ nnz = self.getnnz()
+ format = self.getformat()
+ return "<%dx%d sparse matrix of type '%s'\n" \
+ "\twith %d stored elements in %s format>" % \
+ (self.shape + (self.dtype.type, nnz, _formats[format][1]))
+
+ def __str__(self):
+ maxprint = self.getmaxprint()
+
+ A = self.tocoo()
+ nnz = self.getnnz()
+
+ # helper function, outputs "(i,j) v"
+ def tostr(row,col,data):
+ triples = zip(zip(row,col),data)
+ return '\n'.join( [ (' %s\t%s' % t) for t in triples] )
+
+ if nnz > maxprint:
+ half = maxprint // 2
+ out = tostr(A.row[:half], A.col[:half], A.data[:half])
+ out += "\n :\t:\n"
+ half = maxprint - maxprint//2
+ out += tostr(A.row[-half:], A.col[-half:], A.data[-half:])
+ else:
+ out = tostr(A.row, A.col, A.data)
+
+ return out
+
+ def __nonzero__(self): # Simple -- other ideas?
+ return self.getnnz() > 0
+
+ # What should len(sparse) return? For consistency with dense matrices,
+ # perhaps it should be the number of rows? But for some uses the number of
+ # non-zeros is more important. For now, raise an exception!
+ def __len__(self):
+ # return self.getnnz()
+ raise TypeError, "sparse matrix length is ambiguous; use getnnz()" \
+ " or shape[0]"
+
+ def asformat(self, format):
+ """Return this matrix in a given sparse format
+
+ Parameters
+ ----------
+ format : {string, None}
+ desired sparse matrix format
+ - None for no format conversion
+ - "csr" for csr_matrix format
+ - "csc" for csc_matrix format
+ - "lil" for lil_matrix format
+ - "dok" for dok_matrix format and so on
+
+ """
+
+ if format is None or format == self.format:
+ return self
+ else:
+ return getattr(self,'to' + format)()
+
+ ###################################################################
+ # NOTE: All arithmetic operations use csr_matrix by default.
+ # Therefore a new sparse matrix format just needs to define a
+ # .tocsr() method to provide arithmetic support. Any of these
+ # methods can be overridden for efficiency.
+ ####################################################################
+
+ def multiply(self, other):
+ """Point-wise multiplication by another matrix
+ """
+ return self.tocsr().multiply(other)
+
+ def __abs__(self):
+ return abs(self.tocsr())
+
+ def __add__(self, other): # self + other
+ return self.tocsr().__add__(other)
+
+ def __radd__(self, other): # other + self
+ return self.tocsr().__radd__(other)
+
+ def __sub__(self, other): # self - other
+ #note: this can't be replaced by self + (-other) for unsigned types
+ return self.tocsr().__sub__(other)
+
+ def __rsub__(self, other): # other - self
+ return self.tocsr().__rsub__(other)
+
+ # old __mul__ interfaces
+ @np.deprecate
+ def matvec(self,other):
+ return self * other
+
+ @np.deprecate
+ def matmat(self,other):
+ return self * other
+
+ @np.deprecate
+ def dot(self, other):
+ return self * other
+
+ @np.deprecate
+ def rmatvec(self, other, conjugate=True):
+ """Multiplies the vector 'other' by the sparse matrix, returning a
+ dense vector as a result.
+
+ If 'conjugate' is True:
+ - returns A.transpose().conj() * other
+ Otherwise:
+ - returns A.transpose() * other.
+
+ """
+ if conjugate:
+ return self.conj().transpose() * other
+ else:
+ return self.transpose() * other
+
+ def __mul__(self, other):
+ """interpret other and call one of the following
+
+ self._mul_scalar()
+ self._mul_vector()
+ self._mul_multivector()
+ self._mul_sparse_matrix()
+ """
+
+ M,N = self.shape
+
+ if isscalarlike(other):
+ # scalar value
+ return self._mul_scalar(other)
+
+ if issparse(other):
+ if self.shape[1] != other.shape[0]:
+ raise ValueError('dimension mismatch')
+ return self._mul_sparse_matrix(other)
+
+ try:
+ other.shape
+ except AttributeError:
+ # If it's a list or whatever, treat it like a matrix
+ other = np.asanyarray(other)
+
+ other = np.asanyarray(other)
+
+ if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1:
+ # dense row or column vector
+ if other.shape != (N,) and other.shape != (N,1):
+ raise ValueError('dimension mismatch')
+
+ result = self._mul_vector(np.ravel(other))
+
+ if isinstance(other, np.matrix):
+ result = np.asmatrix(result)
+
+ if other.ndim == 2 and other.shape[1] == 1:
+ # If 'other' was an (nx1) column vector, reshape the result
+ result = result.reshape(-1,1)
+
+ return result
+
+ elif other.ndim == 2:
+ ##
+ # dense 2D array or matrix ("multivector")
+
+ if other.shape[0] != self.shape[1]:
+ raise ValueError('dimension mismatch')
+
+ result = self._mul_multivector(np.asarray(other))
+
+ if isinstance(other, np.matrix):
+ result = np.asmatrix(result)
+
+ return result
+ else:
+ raise ValueError('could not interpret dimensions')
+
+ # by default, use CSR for __mul__ handlers
+ def _mul_scalar(self, other):
+ return self.tocsr()._mul_scalar(other)
+
+ def _mul_vector(self, other):
+ return self.tocsr()._mul_vector(other)
+
+ def _mul_multivector(self, other):
+ return self.tocsr()._mul_multivector(other)
+
+ def _mul_sparse_matrix(self, other):
+ return self.tocsr()._mul_sparse_matrix(other)
+
+ def __rmul__(self, other): # other * self
+ if isscalarlike(other):
+ return self.__mul__(other)
+ else:
+ # Don't use asarray unless we have to
+ try:
+ tr = other.transpose()
+ except AttributeError:
+ tr = np.asarray(other).transpose()
+ return (self.transpose() * tr).transpose()
+
+ ####################
+ # Other Arithmetic #
+ ####################
+
+ def __truediv__(self, other):
+ if isscalarlike(other):
+ return self * (1./other)
+ else:
+ return self.tocsr().__truediv__(other)
+
+ def __div__(self, other):
+ # Always do true division
+ return self.__truediv__(other)
+
+ def __neg__(self):
+ return -self.tocsr()
+
+ def __iadd__(self, other):
+ raise NotImplementedError
+
+ def __isub__(self, other):
+ raise NotImplementedError
+
+ def __imul__(self, other):
+ raise NotImplementedError
+
+ def __idiv__(self, other):
+ return self.__itruediv__(other)
+
+ def __itruediv__(self, other):
+ raise NotImplementedError
+
+ def __pow__(self, other):
+ if self.shape[0] != self.shape[1]:
+ raise TypeError('matrix is not square')
+
+ if isintlike(other):
+ other = int(other)
+ if other < 0:
+ raise ValueError('exponent must be >= 0')
+
+ if other == 0:
+ from construct import identity
+ return identity( self.shape[0], dtype=self.dtype )
+ elif other == 1:
+ return self.copy()
+ else:
+ result = self
+ for i in range(1,other):
+ result = result*self
+ return result
+ elif isscalarlike(other):
+ raise ValueError('exponent must be an integer')
+ elif isspmatrix(other):
+ warn('Using ** for elementwise multiplication is deprecated.'\
+ 'Use .multiply() instead', DeprecationWarning)
+ return self.multiply(other)
+ else:
+ raise NotImplementedError
+
+
+ def __getattr__(self, attr):
+ if attr == 'A':
+ return self.toarray()
+ elif attr == 'T':
+ return self.transpose()
+ elif attr == 'H':
+ return self.getH()
+ elif attr == 'real':
+ return self._real()
+ elif attr == 'imag':
+ return self._imag()
+ elif attr == 'size':
+ return self.getnnz()
+ else:
+ raise AttributeError, attr + " not found"
+
+ def transpose(self):
+ return self.tocsr().transpose()
+
+ def conj(self):
+ return self.tocsr().conj()
+
+ def conjugate(self):
+ return self.conj()
+
+ # Renamed conjtranspose() -> getH() for compatibility with dense matrices
+ def getH(self):
+ return self.transpose().conj()
+
+ def _real(self):
+ return self.tocsr()._real()
+
+ def _imag(self):
+ return self.tocsr()._imag()
+
+
+ def nonzero(self):
+ """nonzero indices
+
+ Returns a tuple of arrays (row,col) containing the indices
+ of the non-zero elements of the matrix.
+
+ Example
+ -------
+
+ >>> from scipy.sparse import csr_matrix
+ >>> A = csr_matrix([[1,2,0],[0,0,3],[4,0,5]])
+ >>> A.nonzero()
+ (array([0, 0, 1, 2, 2]), array([0, 1, 2, 0, 2]))
+
+ """
+
+ # convert to COOrdinate format
+ A = self.tocoo()
+ nz_mask = A.data != 0
+ return (A.row[nz_mask],A.col[nz_mask])
+
+
+ def getcol(self, j):
+ """Returns a copy of column j of the matrix, as an (m x 1) sparse
+ matrix (column vector).
+ """
+ # Spmatrix subclasses should override this method for efficiency.
+ # Post-multiply by a (n x 1) column vector 'a' containing all zeros
+ # except for a_j = 1
+ from csc import csc_matrix
+ n = self.shape[1]
+ a = csc_matrix((n, 1), dtype=self.dtype)
+ a[j, 0] = 1
+ return self * a
+
+ def getrow(self, i):
+ """Returns a copy of row i of the matrix, as a (1 x n) sparse
+ matrix (row vector).
+ """
+ # Spmatrix subclasses should override this method for efficiency.
+ # Pre-multiply by a (1 x m) row vector 'a' containing all zeros
+ # except for a_i = 1
+ from csr import csr_matrix
+ m = self.shape[0]
+ a = csr_matrix((1, m), dtype=self.dtype)
+ a[0, i] = 1
+ return a * self
+
+ #def __array__(self):
+ # return self.toarray()
+
+ def todense(self):
+ return np.asmatrix(self.toarray())
+
+ def toarray(self):
+ return self.tocoo().toarray()
+
+ def todok(self):
+ return self.tocoo().todok()
+
+ def tocoo(self):
+ return self.tocsr().tocoo()
+
+ def tolil(self):
+ return self.tocsr().tolil()
+
+ def todia(self):
+ return self.tocoo().todia()
+
+ def tobsr(self, blocksize=None):
+ return self.tocsr().tobsr(blocksize=blocksize)
+
+ def copy(self):
+ return self.__class__(self,copy=True)
+
+ def sum(self, axis=None):
+ """Sum the matrix over the given axis. If the axis is None, sum
+ over both rows and columns, returning a scalar.
+ """
+ # We use multiplication by an array of ones to achieve this.
+ # For some sparse matrix formats more efficient methods are
+ # possible -- these should override this function.
+ m, n = self.shape
+ if axis == 0:
+ # sum over columns
+ return np.asmatrix(np.ones((1, m), dtype=self.dtype)) * self
+ elif axis == 1:
+ # sum over rows
+ return self * np.asmatrix(np.ones((n, 1), dtype=self.dtype))
+ elif axis is None:
+ # sum over rows and columns
+ return ( self * np.asmatrix(np.ones((n, 1), dtype=self.dtype)) ).sum()
+ else:
+ raise ValueError, "axis out of bounds"
+
+ def mean(self, axis=None):
+ """Average the matrix over the given axis. If the axis is None,
+ average over both rows and columns, returning a scalar.
+ """
+ if axis == 0:
+ mean = self.sum(0)
+ mean *= 1.0 / self.shape[0]
+ return mean
+ elif axis == 1:
+ mean = self.sum(1)
+ mean *= 1.0 / self.shape[1]
+ return mean
+ elif axis is None:
+ return self.sum(None) * 1.0 / (self.shape[0]*self.shape[1])
+ else:
+ raise ValueError, "axis out of bounds"
+
+ def diagonal(self):
+ """Returns the main diagonal of the matrix
+ """
+ #TODO support k != 0
+ return self.tocsr().diagonal()
+
+ def setdiag(self, values, k=0):
+ """Fills the diagonal elements {a_ii} with the values from the
+ given sequence. If k != 0, fills the off-diagonal elements
+ {a_{i,i+k}} instead.
+
+ values may have any length. If the diagonal is longer than values,
+ then the remaining diagonal entries will not be set. If values if
+ longer than the diagonal, then the remaining values are ignored.
+ """
+ M, N = self.shape
+ if (k > 0 and k >= N) or (k < 0 and -k >= M):
+ raise ValueError, "k exceedes matrix dimensions"
+ if k < 0:
+ max_index = min(M+k, N, len(values))
+ for i,v in enumerate(values[:max_index]):
+ self[i - k, i] = v
+ else:
+ max_index = min(M, N-k, len(values))
+ for i,v in enumerate(values[:max_index]):
+ self[i, i + k] = v
+
+ def save(self, file_name, format = '%d %d %f\n'):
+ #deprecated on Dec 14 2007
+ #remove after 0.7 release
+ warn('save() is deprecated, consider using mmwrite() or savemat()' \
+ ' provided by scipy.io instead',
+ DeprecationWarning)
+ try:
+ fd = open(file_name, 'w')
+ except Exception, e:
+ raise e, file_name
+
+ fd.write('%d %d\n' % self.shape)
+ fd.write('%d\n' % self.size)
+ for ii in xrange(self.size):
+ ir, ic = self.rowcol(ii)
+ data = self.getdata(ii)
+ fd.write(format % (ir, ic, data))
+ fd.close()
+
+
+from sputils import _isinstance
+
+def isspmatrix(x):
+ return _isinstance(x, spmatrix)
+
+issparse = isspmatrix
diff --git a/cobra/oven/danielhyduke/jython/scipy/sparse/compressed.py b/cobra/oven/danielhyduke/jython/scipy/sparse/compressed.py
new file mode 100644
index 0000000..93ed506
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/sparse/compressed.py
@@ -0,0 +1,708 @@
+"""Base class for sparse matrix formats using compressed storage
+"""
+
+__all__ = []
+
+from warnings import warn
+
+import numpy as np
+
+from base import spmatrix, isspmatrix, SparseEfficiencyWarning
+from data import _data_matrix
+import sparsetools
+from sputils import upcast, to_native, isdense, isshape, getdtype, \
+ isscalarlike, isintlike
+
+
+class _cs_matrix(_data_matrix):
+ """base matrix class for compressed row and column oriented matrices"""
+
+ def __init__(self, arg1, shape=None, dtype=None, copy=False, dims=None, nzmax=None):
+ _data_matrix.__init__(self)
+
+ if dims is not None:
+ warn("dims= is deprecated, use shape= instead", DeprecationWarning)
+ shape=dims
+
+ if nzmax is not None:
+ warn("nzmax= is deprecated", DeprecationWarning)
+
+
+ if isspmatrix(arg1):
+ if arg1.format == self.format and copy:
+ arg1 = arg1.copy()
+ else:
+ arg1 = arg1.asformat(self.format)
+ self._set_self( arg1 )
+
+ elif isinstance(arg1, tuple):
+ if isshape(arg1):
+ # It's a tuple of matrix dimensions (M, N)
+ # create empty matrix
+ self.shape = arg1 #spmatrix checks for errors here
+ M, N = self.shape
+ self.data = np.zeros(0, getdtype(dtype, default=float))
+ self.indices = np.zeros(0, np.intc)
+ self.indptr = np.zeros(self._swap((M,N))[0] + 1, dtype=np.intc)
+ else:
+ if len(arg1) == 2:
+ # (data, ij) format
+ from coo import coo_matrix
+ other = self.__class__( coo_matrix(arg1, shape=shape) )
+ self._set_self( other )
+ elif len(arg1) == 3:
+ # (data, indices, indptr) format
+ (data, indices, indptr) = arg1
+ self.indices = np.array(indices, copy=copy)
+ self.indptr = np.array(indptr, copy=copy)
+ self.data = np.array(data, copy=copy, dtype=getdtype(dtype, data))
+ else:
+ raise ValueError, "unrecognized %s_matrix constructor usage" %\
+ self.format
+
+ else:
+ #must be dense
+ try:
+ arg1 = np.asarray(arg1)
+ except:
+ raise ValueError, "unrecognized %s_matrix constructor usage" % \
+ self.format
+ from coo import coo_matrix
+ self._set_self( self.__class__(coo_matrix(arg1, dtype=dtype)) )
+
+ # Read matrix dimensions given, if any
+ if shape is not None:
+ self.shape = shape # spmatrix will check for errors
+ else:
+ if self.shape is None:
+ # shape not already set, try to infer dimensions
+ try:
+ major_dim = len(self.indptr) - 1
+ minor_dim = self.indices.max() + 1
+ except:
+ raise ValueError,'unable to infer matrix dimensions'
+ else:
+ self.shape = self._swap((major_dim,minor_dim))
+
+ if dtype is not None:
+ self.data = self.data.astype(dtype)
+
+ self.check_format(full_check=False)
+
+ def getnnz(self):
+ return self.indptr[-1]
+ nnz = property(fget=getnnz)
+
+
+ def _set_self(self, other, copy=False):
+ """take the member variables of other and assign them to self"""
+
+ if copy:
+ other = other.copy()
+
+ self.data = other.data
+ self.indices = other.indices
+ self.indptr = other.indptr
+ self.shape = other.shape
+
+ def check_format(self, full_check=True):
+ """check whether the matrix format is valid
+
+ Parameters
+ ==========
+
+ - full_check : {bool}
+ - True - rigorous check, O(N) operations : default
+ - False - basic check, O(1) operations
+
+ """
+ #use _swap to determine proper bounds
+ major_name,minor_name = self._swap(('row','column'))
+ major_dim,minor_dim = self._swap(self.shape)
+
+ # index arrays should have integer data types
+ if self.indptr.dtype.kind != 'i':
+ warn("indptr array has non-integer dtype (%s)" \
+ % self.indptr.dtype.name )
+ if self.indices.dtype.kind != 'i':
+ warn("indices array has non-integer dtype (%s)" \
+ % self.indices.dtype.name )
+
+ # only support 32-bit ints for now
+ self.indptr = np.asarray(self.indptr, dtype=np.intc)
+ self.indices = np.asarray(self.indices, dtype=np.intc)
+ self.data = to_native(self.data)
+
+ # check array shapes
+ if np.rank(self.data) != 1 or np.rank(self.indices) != 1 or np.rank(self.indptr) != 1:
+ raise ValueError('data, indices, and indptr should be rank 1')
+
+ # check index pointer
+ if (len(self.indptr) != major_dim + 1 ):
+ raise ValueError, \
+ "index pointer size (%d) should be (%d)" % \
+ (len(self.indptr), major_dim + 1)
+ if (self.indptr[0] != 0):
+ raise ValueError,"index pointer should start with 0"
+
+ # check index and data arrays
+ if (len(self.indices) != len(self.data)):
+ raise ValueError,"indices and data should have the same size"
+ if (self.indptr[-1] > len(self.indices)):
+ raise ValueError, \
+ "Last value of index pointer should be less than "\
+ "the size of index and data arrays"
+
+ self.prune()
+
+ if full_check:
+ #check format validity (more expensive)
+ if self.nnz > 0:
+ if self.indices.max() >= minor_dim:
+ raise ValueError, "%s index values must be < %d" % \
+ (minor_name,minor_dim)
+ if self.indices.min() < 0:
+ raise ValueError, "%s index values must be >= 0" % \
+ minor_name
+ if np.diff(self.indptr).min() < 0:
+ raise ValueError,'index pointer values must form a " \
+ "non-decreasing sequence'
+
+ #if not self.has_sorted_indices():
+ # warn('Indices were not in sorted order. Sorting indices.')
+ # self.sort_indices()
+ # assert(self.has_sorted_indices())
+ #TODO check for duplicates?
+
+
+ def __add__(self,other):
+ # First check if argument is a scalar
+ if isscalarlike(other):
+ # Now we would add this scalar to every element.
+ raise NotImplementedError, 'adding a scalar to a CSC or CSR ' \
+ 'matrix is not supported'
+ elif isspmatrix(other):
+ if (other.shape != self.shape):
+ raise ValueError, "inconsistent shapes"
+
+ return self._binopt(other,'_plus_')
+ elif isdense(other):
+ # Convert this matrix to a dense matrix and add them
+ return self.todense() + other
+ else:
+ raise NotImplementedError
+
+ def __radd__(self,other):
+ return self.__add__(other)
+
+ def __sub__(self,other):
+ # First check if argument is a scalar
+ if isscalarlike(other):
+ # Now we would add this scalar to every element.
+ raise NotImplementedError, 'adding a scalar to a sparse ' \
+ 'matrix is not supported'
+ elif isspmatrix(other):
+ if (other.shape != self.shape):
+ raise ValueError, "inconsistent shapes"
+
+ return self._binopt(other,'_minus_')
+ elif isdense(other):
+ # Convert this matrix to a dense matrix and subtract them
+ return self.todense() - other
+ else:
+ raise NotImplementedError
+
+ def __rsub__(self,other): # other - self
+ #note: this can't be replaced by other + (-self) for unsigned types
+ if isscalarlike(other):
+ # Now we would add this scalar to every element.
+ raise NotImplementedError, 'adding a scalar to a sparse ' \
+ 'matrix is not supported'
+ elif isdense(other):
+ # Convert this matrix to a dense matrix and subtract them
+ return other - self.todense()
+ else:
+ raise NotImplementedError
+
+
+ def __truediv__(self,other):
+ if isscalarlike(other):
+ return self * (1./other)
+
+ elif isspmatrix(other):
+ if other.shape != self.shape:
+ raise ValueError('inconsistent shapes')
+
+ return self._binopt(other,'_eldiv_')
+
+ else:
+ raise NotImplementedError
+
+
+ def multiply(self, other):
+ """Point-wise multiplication by another matrix
+ """
+ if other.shape != self.shape:
+ raise ValueError('inconsistent shapes')
+
+ if isdense(other):
+ return np.multiply(self.todense(),other)
+ else:
+ other = self.__class__(other)
+ return self._binopt(other,'_elmul_')
+
+
+ ###########################
+ # Multiplication handlers #
+ ###########################
+
+ def _mul_vector(self, other):
+ M,N = self.shape
+
+ #output array
+ result = np.zeros( self.shape[0], dtype=upcast(self.dtype,other.dtype) )
+
+ # csr_matvec or csc_matvec
+ fn = getattr(sparsetools,self.format + '_matvec')
+ fn(M, N, self.indptr, self.indices, self.data, other, result)
+
+ return result
+
+
+ def _mul_multivector(self, other):
+ M,N = self.shape
+ n_vecs = other.shape[1] #number of column vectors
+
+ result = np.zeros( (M,n_vecs), dtype=upcast(self.dtype,other.dtype) )
+
+ # csr_matvecs or csc_matvecs
+ fn = getattr(sparsetools,self.format + '_matvecs')
+ fn(M, N, n_vecs, self.indptr, self.indices, self.data, other.ravel(), result.ravel())
+
+ return result
+
+
+ def _mul_sparse_matrix(self, other):
+ M, K1 = self.shape
+ K2, N = other.shape
+
+ major_axis = self._swap((M,N))[0]
+ indptr = np.empty(major_axis + 1, dtype=np.intc)
+
+ other = self.__class__(other) #convert to this format
+ fn = getattr(sparsetools, self.format + '_matmat_pass1')
+ fn( M, N, self.indptr, self.indices, \
+ other.indptr, other.indices, \
+ indptr)
+
+ nnz = indptr[-1]
+ indices = np.empty(nnz, dtype=np.intc)
+ data = np.empty(nnz, dtype=upcast(self.dtype,other.dtype))
+
+ fn = getattr(sparsetools, self.format + '_matmat_pass2')
+ fn( M, N, self.indptr, self.indices, self.data, \
+ other.indptr, other.indices, other.data, \
+ indptr, indices, data)
+
+ return self.__class__((data,indices,indptr),shape=(M,N))
+
+
+ @np.deprecate
+ def getdata(self, ind):
+ return self.data[ind]
+
+ def diagonal(self):
+ """Returns the main diagonal of the matrix
+ """
+ #TODO support k-th diagonal
+ fn = getattr(sparsetools, self.format + "_diagonal")
+ y = np.empty( min(self.shape), dtype=upcast(self.dtype) )
+ fn(self.shape[0], self.shape[1], self.indptr, self.indices, self.data, y)
+ return y
+
+ def sum(self, axis=None):
+ """Sum the matrix over the given axis. If the axis is None, sum
+ over both rows and columns, returning a scalar.
+ """
+ # The spmatrix base class already does axis=0 and axis=1 efficiently
+ # so we only do the case axis=None here
+ if axis is None:
+ return self.data.sum()
+ else:
+ return spmatrix.sum(self,axis)
+ raise ValueError, "axis out of bounds"
+
+ #######################
+ # Getting and Setting #
+ #######################
+
+ def __getitem__(self, key):
+ if isinstance(key, tuple):
+ row = key[0]
+ col = key[1]
+
+ #TODO implement CSR[ [1,2,3], X ] with sparse matmat
+ #TODO make use of sorted indices
+
+ if isintlike(row) and isintlike(col):
+ return self._get_single_element(row,col)
+ else:
+ major,minor = self._swap((row,col))
+ if isintlike(major) and isinstance(minor,slice):
+ minor_shape = self._swap(self.shape)[1]
+ start, stop, stride = minor.indices(minor_shape)
+ out_shape = self._swap( (1, stop-start) )
+ return self._get_slice( major, start, stop, stride, out_shape)
+ elif isinstance( row, slice) or isinstance(col, slice):
+ return self._get_submatrix( row, col )
+ else:
+ raise NotImplementedError
+
+ elif isintlike(key):
+ return self[key, :]
+ else:
+ raise IndexError, "invalid index"
+
+
+ def _get_single_element(self,row,col):
+ M, N = self.shape
+ if (row < 0):
+ row += M
+ if (col < 0):
+ col += N
+ if not (0<=row<M) or not (0<=col<N):
+ raise IndexError("index out of bounds")
+
+ major_index, minor_index = self._swap((row,col))
+
+ start = self.indptr[major_index]
+ end = self.indptr[major_index+1]
+ indxs = np.where(minor_index == self.indices[start:end])[0]
+
+ num_matches = len(indxs)
+
+ if num_matches == 0:
+ # entry does not appear in the matrix
+ return 0
+ elif num_matches == 1:
+ return self.data[start:end][indxs[0]]
+ else:
+ raise ValueError('nonzero entry (%d,%d) occurs more than once' % (row,col))
+
+ def _get_slice(self, i, start, stop, stride, shape):
+ """Returns a copy of the elements
+ [i, start:stop:string] for row-oriented matrices
+ [start:stop:string, i] for column-oriented matrices
+ """
+ if stride != 1:
+ raise ValueError, "slicing with step != 1 not supported"
+ if stop <= start:
+ raise ValueError, "slice width must be >= 1"
+
+ #TODO make [i,:] faster
+ #TODO implement [i,x:y:z]
+
+ indices = []
+
+ for ind in xrange(self.indptr[i], self.indptr[i+1]):
+ if self.indices[ind] >= start and self.indices[ind] < stop:
+ indices.append(ind)
+
+ index = self.indices[indices] - start
+ data = self.data[indices]
+ indptr = np.array([0, len(indices)])
+ return self.__class__((data, index, indptr), shape=shape, \
+ dtype=self.dtype)
+
+ def _get_submatrix( self, slice0, slice1 ):
+ """Return a submatrix of this matrix (new matrix is created)."""
+
+ slice0, slice1 = self._swap((slice0,slice1))
+ shape0, shape1 = self._swap(self.shape)
+ def _process_slice( sl, num ):
+ if isinstance( sl, slice ):
+ i0, i1 = sl.start, sl.stop
+ if i0 is None:
+ i0 = 0
+ elif i0 < 0:
+ i0 = num + i0
+
+ if i1 is None:
+ i1 = num
+ elif i1 < 0:
+ i1 = num + i1
+
+ return i0, i1
+
+ elif np.isscalar( sl ):
+ if sl < 0:
+ sl += num
+
+ return sl, sl + 1
+
+ else:
+ return sl[0], sl[1]
+
+ def _in_bounds( i0, i1, num ):
+ if not (0<=i0<num) or not (0<i1<=num) or not (i0<i1):
+ raise IndexError,\
+ "index out of bounds: 0<=%d<%d, 0<=%d<%d, %d<%d" %\
+ (i0, num, i1, num, i0, i1)
+
+ i0, i1 = _process_slice( slice0, shape0 )
+ j0, j1 = _process_slice( slice1, shape1 )
+ _in_bounds( i0, i1, shape0 )
+ _in_bounds( j0, j1, shape1 )
+
+ aux = sparsetools.get_csr_submatrix( shape0, shape1,
+ self.indptr, self.indices,
+ self.data,
+ i0, i1, j0, j1 )
+
+ data, indices, indptr = aux[2], aux[1], aux[0]
+ shape = self._swap( (i1 - i0, j1 - j0) )
+
+ return self.__class__( (data,indices,indptr), shape=shape )
+
+
+ def __setitem__(self, key, val):
+ if isinstance(key, tuple):
+ row,col = key
+ if not (isscalarlike(row) and isscalarlike(col)):
+ raise NotImplementedError("Fancy indexing in assignment not "
+ "supported for csr matrices.")
+ M, N = self.shape
+ if (row < 0):
+ row += M
+ if (col < 0):
+ col += N
+ if not (0<=row<M) or not (0<=col<N):
+ raise IndexError, "index out of bounds"
+
+ major_index, minor_index = self._swap((row,col))
+
+ start = self.indptr[major_index]
+ end = self.indptr[major_index+1]
+ indxs = np.where(minor_index == self.indices[start:end])[0]
+
+ num_matches = len(indxs)
+
+
+ if not np.isscalar(val):
+ raise ValueError('setting an array element with a sequence')
+
+ val = self.dtype.type(val)
+
+ if num_matches == 0:
+ #entry not already present
+ warn('changing the sparsity structure of a %s_matrix is expensive. ' \
+ 'lil_matrix is more efficient.' % self.format, \
+ SparseEfficiencyWarning)
+
+ if self.has_sorted_indices:
+ # preserve sorted order
+ newindx = start + self.indices[start:end].searchsorted(minor_index)
+ else:
+ newindx = start
+
+ val = np.array([val], dtype=self.data.dtype)
+ minor_index = np.array([minor_index], dtype=self.indices.dtype)
+
+ self.data = np.concatenate((self.data[:newindx], val, self.data[newindx:]))
+ self.indices = np.concatenate((self.indices[:newindx], minor_index, self.indices[newindx:]))
+ self.indptr = self.indptr.copy()
+
+ self.indptr[major_index+1:] += 1
+
+ elif num_matches == 1:
+ #entry appears exactly once
+ self.data[start:end][indxs[0]] = val
+ else:
+ #entry appears more than once
+ raise ValueError,'nonzero entry (%d,%d) occurs more than once' % (row,col)
+
+ self.check_format(full_check=True)
+ else:
+ # We should allow slices here!
+ raise IndexError, "invalid index"
+
+ ######################
+ # Conversion methods #
+ ######################
+
+ def todia(self):
+ return self.tocoo(copy=False).todia()
+
+ def todok(self):
+ return self.tocoo(copy=False).todok()
+
+ def tocoo(self,copy=True):
+ """Return a COOrdinate representation of this matrix
+
+ When copy=False the index and data arrays are not copied.
+ """
+ major_dim,minor_dim = self._swap(self.shape)
+
+ data = self.data
+ minor_indices = self.indices
+
+ if copy:
+ data = data.copy()
+ minor_indices = minor_indices.copy()
+
+ major_indices = np.empty(len(minor_indices), dtype=np.intc)
+
+ sparsetools.expandptr(major_dim,self.indptr,major_indices)
+
+ row,col = self._swap((major_indices,minor_indices))
+
+ from coo import coo_matrix
+ return coo_matrix((data,(row,col)), self.shape)
+
+ def toarray(self):
+ return self.tocoo(copy=False).toarray()
+
+ ##############################################################
+ # methods that examine or modify the internal data structure #
+ ##############################################################
+
+ def eliminate_zeros(self):
+ """Remove zero entries from the matrix
+
+ The is an *in place* operation
+ """
+ fn = sparsetools.csr_eliminate_zeros
+ M,N = self._swap(self.shape)
+ fn( M, N, self.indptr, self.indices, self.data)
+
+ self.prune() #nnz may have changed
+
+ def sum_duplicates(self):
+ """Eliminate duplicate matrix entries by adding them together
+
+ The is an *in place* operation
+ """
+ self.sort_indices()
+
+ fn = sparsetools.csr_sum_duplicates
+ M,N = self._swap(self.shape)
+ fn( M, N, self.indptr, self.indices, self.data)
+
+ self.prune() #nnz may have changed
+
+
+ def __get_sorted(self):
+ """Determine whether the matrix has sorted indices
+
+ Returns
+ - True: if the indices of the matrix are in sorted order
+ - False: otherwise
+
+ """
+
+ #first check to see if result was cached
+ if not hasattr(self,'__has_sorted_indices'):
+ fn = sparsetools.csr_has_sorted_indices
+ self.__has_sorted_indices = \
+ fn( len(self.indptr) - 1, self.indptr, self.indices)
+ return self.__has_sorted_indices
+
+ def __set_sorted(self, val):
+ self.__has_sorted_indices = bool(val)
+
+ has_sorted_indices = property(fget=__get_sorted, fset=__set_sorted)
+
+ def sorted_indices(self):
+ """Return a copy of this matrix with sorted indices
+ """
+ A = self.copy()
+ A.sort_indices()
+ return A
+
+ # an alternative that has linear complexity is the following
+ # although the previous option is typically faster
+ #return self.toother().toother()
+
+ def sort_indices(self):
+ """Sort the indices of this matrix *in place*
+ """
+
+ if not self.has_sorted_indices:
+ fn = sparsetools.csr_sort_indices
+ fn( len(self.indptr) - 1, self.indptr, self.indices, self.data)
+ self.has_sorted_indices = True
+
+ #TODO remove after 0.7
+ def ensure_sorted_indices(self, inplace=False):
+ """Return a copy of this matrix where the column indices are sorted
+ """
+ warn('ensure_sorted_indices is deprecated, ' \
+ 'use sorted_indices() or sort_indices() instead', \
+ DeprecationWarning)
+
+ if inplace:
+ self.sort_indices()
+ else:
+ return self.sorted_indices()
+
+ def prune(self):
+ """Remove empty space after all non-zero elements.
+ """
+ major_dim = self._swap(self.shape)[0]
+
+ if len(self.indptr) != major_dim + 1:
+ raise ValueError('index pointer has invalid length')
+ if len(self.indices) < self.nnz:
+ raise ValueError('indices array has fewer than nnz elements')
+ if len(self.data) < self.nnz:
+ raise ValueError('data array has fewer than nnz elements')
+
+ self.data = self.data[:self.nnz]
+ self.indices = self.indices[:self.nnz]
+
+
+ ###################
+ # utility methods #
+ ###################
+
+ # needed by _data_matrix
+ def _with_data(self,data,copy=True):
+ """Returns a matrix with the same sparsity structure as self,
+ but with different data. By default the structure arrays
+ (i.e. .indptr and .indices) are copied.
+ """
+ if copy:
+ return self.__class__((data,self.indices.copy(),self.indptr.copy()), \
+ shape=self.shape,dtype=data.dtype)
+ else:
+ return self.__class__((data,self.indices,self.indptr), \
+ shape=self.shape,dtype=data.dtype)
+
+ def _binopt(self, other, op):
+ """apply the binary operation fn to two sparse matrices"""
+ other = self.__class__(other)
+
+ # e.g. csr_plus_csr, csr_minus_csr, etc.
+ fn = getattr(sparsetools, self.format + op + self.format)
+
+ maxnnz = self.nnz + other.nnz
+ indptr = np.empty_like(self.indptr)
+ indices = np.empty(maxnnz, dtype=np.intc)
+ data = np.empty(maxnnz, dtype=upcast(self.dtype,other.dtype))
+
+ fn(self.shape[0], self.shape[1], \
+ self.indptr, self.indices, self.data,
+ other.indptr, other.indices, other.data,
+ indptr, indices, data)
+
+ actual_nnz = indptr[-1]
+ indices = indices[:actual_nnz]
+ data = data[:actual_nnz]
+ if actual_nnz < maxnnz / 2:
+ #too much waste, trim arrays
+ indices = indices.copy()
+ data = data.copy()
+
+ A = self.__class__((data, indices, indptr), shape=self.shape)
+
+ return A
diff --git a/cobra/oven/danielhyduke/jython/scipy/sparse/construct.py b/cobra/oven/danielhyduke/jython/scipy/sparse/construct.py
new file mode 100644
index 0000000..ef2f4ab
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/sparse/construct.py
@@ -0,0 +1,535 @@
+"""Functions to construct sparse matrices
+"""
+
+__docformat__ = "restructuredtext en"
+
+__all__ = [ 'spdiags', 'eye', 'identity', 'kron', 'kronsum',
+ 'hstack', 'vstack', 'bmat', 'rand']
+
+
+from warnings import warn
+
+import numpy as np
+
+from sputils import upcast
+
+from csr import csr_matrix
+from csc import csc_matrix
+from bsr import bsr_matrix
+from coo import coo_matrix
+from lil import lil_matrix
+from dia import dia_matrix
+
+def spdiags(data, diags, m, n, format=None):
+ """
+ Return a sparse matrix from diagonals.
+
+ Parameters
+ ----------
+ data : array_like
+ matrix diagonals stored row-wise
+ diags : diagonals to set
+ - k = 0 the main diagonal
+ - k > 0 the k-th upper diagonal
+ - k < 0 the k-th lower diagonal
+ m, n : int
+ shape of the result
+ format : format of the result (e.g. "csr")
+ By default (format=None) an appropriate sparse matrix
+ format is returned. This choice is subject to change.
+
+ See Also
+ --------
+ dia_matrix : the sparse DIAgonal format.
+
+ Examples
+ --------
+ >>> data = array([[1,2,3,4],[1,2,3,4],[1,2,3,4]])
+ >>> diags = array([0,-1,2])
+ >>> spdiags(data, diags, 4, 4).todense()
+ matrix([[1, 0, 3, 0],
+ [1, 2, 0, 4],
+ [0, 2, 3, 0],
+ [0, 0, 3, 4]])
+
+ """
+ return dia_matrix((data, diags), shape=(m,n)).asformat(format)
+
+def identity(n, dtype='d', format=None):
+ """Identity matrix in sparse format
+
+ Returns an identity matrix with shape (n,n) using a given
+ sparse format and dtype.
+
+ Parameters
+ ----------
+ n : integer
+ Shape of the identity matrix.
+ dtype :
+ Data type of the matrix
+ format : string
+ Sparse format of the result, e.g. format="csr", etc.
+
+ Examples
+ --------
+ >>> identity(3).todense()
+ matrix([[ 1., 0., 0.],
+ [ 0., 1., 0.],
+ [ 0., 0., 1.]])
+ >>> identity(3, dtype='int8', format='dia')
+ <3x3 sparse matrix of type '<type 'numpy.int8'>'
+ with 3 stored elements (1 diagonals) in DIAgonal format>
+
+ """
+
+ if format in ['csr','csc']:
+ indptr = np.arange(n+1, dtype=np.intc)
+ indices = np.arange(n, dtype=np.intc)
+ data = np.ones(n, dtype=dtype)
+ cls = eval('%s_matrix' % format)
+ return cls((data,indices,indptr),(n,n))
+ elif format == 'coo':
+ row = np.arange(n, dtype=np.intc)
+ col = np.arange(n, dtype=np.intc)
+ data = np.ones(n, dtype=dtype)
+ return coo_matrix((data,(row,col)),(n,n))
+ elif format == 'dia':
+ data = np.ones(n, dtype=dtype)
+ diags = [0]
+ return dia_matrix((data,diags), shape=(n,n))
+ else:
+ return identity(n, dtype=dtype, format='csr').asformat(format)
+
+
+def eye(m, n, k=0, dtype='d', format=None):
+ """eye(m, n) returns a sparse (m x n) matrix where the k-th diagonal
+ is all ones and everything else is zeros.
+ """
+ m,n = int(m),int(n)
+ diags = np.ones((1, max(0, min(m + k, n))), dtype=dtype)
+ return spdiags(diags, k, m, n).asformat(format)
+
+
+def kron(A, B, format=None):
+ """kronecker product of sparse matrices A and B
+
+ Parameters
+ ----------
+ A : sparse or dense matrix
+ first matrix of the product
+ B : sparse or dense matrix
+ second matrix of the product
+ format : string
+ format of the result (e.g. "csr")
+
+ Returns
+ -------
+ kronecker product in a sparse matrix format
+
+
+ Examples
+ --------
+ >>> A = csr_matrix(array([[0,2],[5,0]]))
+ >>> B = csr_matrix(array([[1,2],[3,4]]))
+ >>> kron(A,B).todense()
+ matrix([[ 0, 0, 2, 4],
+ [ 0, 0, 6, 8],
+ [ 5, 10, 0, 0],
+ [15, 20, 0, 0]])
+
+ >>> kron(A,[[1,2],[3,4]]).todense()
+ matrix([[ 0, 0, 2, 4],
+ [ 0, 0, 6, 8],
+ [ 5, 10, 0, 0],
+ [15, 20, 0, 0]])
+
+ """
+ B = coo_matrix(B)
+
+ if (format is None or format == "bsr") and 2*B.nnz >= B.shape[0] * B.shape[1]:
+ #B is fairly dense, use BSR
+ A = csr_matrix(A,copy=True)
+
+ output_shape = (A.shape[0]*B.shape[0], A.shape[1]*B.shape[1])
+
+ if A.nnz == 0 or B.nnz == 0:
+ # kronecker product is the zero matrix
+ return coo_matrix( output_shape )
+
+ B = B.toarray()
+ data = A.data.repeat(B.size).reshape(-1,B.shape[0],B.shape[1])
+ data = data * B
+
+ return bsr_matrix((data,A.indices,A.indptr), shape=output_shape)
+ else:
+ #use COO
+ A = coo_matrix(A)
+ output_shape = (A.shape[0]*B.shape[0], A.shape[1]*B.shape[1])
+
+ if A.nnz == 0 or B.nnz == 0:
+ # kronecker product is the zero matrix
+ return coo_matrix( output_shape )
+
+ # expand entries of a into blocks
+ row = A.row.repeat(B.nnz)
+ col = A.col.repeat(B.nnz)
+ data = A.data.repeat(B.nnz)
+
+ row *= B.shape[0]
+ col *= B.shape[1]
+
+ # increment block indices
+ row,col = row.reshape(-1,B.nnz),col.reshape(-1,B.nnz)
+ row += B.row
+ col += B.col
+ row,col = row.reshape(-1),col.reshape(-1)
+
+ # compute block entries
+ data = data.reshape(-1,B.nnz) * B.data
+ data = data.reshape(-1)
+
+ return coo_matrix((data,(row,col)), shape=output_shape).asformat(format)
+
+def kronsum(A, B, format=None):
+ """kronecker sum of sparse matrices A and B
+
+ Kronecker sum of two sparse matrices is a sum of two Kronecker
+ products kron(I_n,A) + kron(B,I_m) where A has shape (m,m)
+ and B has shape (n,n) and I_m and I_n are identity matrices
+ of shape (m,m) and (n,n) respectively.
+
+ Parameters
+ ----------
+ A
+ square matrix
+ B
+ square matrix
+ format : string
+ format of the result (e.g. "csr")
+
+ Returns
+ -------
+ kronecker sum in a sparse matrix format
+
+ Examples
+ --------
+
+
+ """
+ A = coo_matrix(A)
+ B = coo_matrix(B)
+
+ if A.shape[0] != A.shape[1]:
+ raise ValueError('A is not square')
+
+ if B.shape[0] != B.shape[1]:
+ raise ValueError('B is not square')
+
+ dtype = upcast(A.dtype, B.dtype)
+
+ L = kron(identity(B.shape[0],dtype=dtype), A, format=format)
+ R = kron(B, identity(A.shape[0],dtype=dtype), format=format)
+
+ return (L+R).asformat(format) #since L + R is not always same format
+
+
+def hstack(blocks, format=None, dtype=None):
+ """
+ Stack sparse matrices horizontally (column wise)
+
+ Parameters
+ ----------
+ blocks
+ sequence of sparse matrices with compatible shapes
+ format : string
+ sparse format of the result (e.g. "csr")
+ by default an appropriate sparse matrix format is returned.
+ This choice is subject to change.
+
+ See Also
+ --------
+ vstack : stack sparse matrices vertically (row wise)
+
+ Examples
+ --------
+ >>> from scipy.sparse import coo_matrix, vstack
+ >>> A = coo_matrix([[1,2],[3,4]])
+ >>> B = coo_matrix([[5],[6]])
+ >>> hstack( [A,B] ).todense()
+ matrix([[1, 2, 5],
+ [3, 4, 6]])
+
+ """
+ return bmat([blocks], format=format, dtype=dtype)
+
+def vstack(blocks, format=None, dtype=None):
+ """
+ Stack sparse matrices vertically (row wise)
+
+ Parameters
+ ----------
+ blocks
+ sequence of sparse matrices with compatible shapes
+ format : string
+ sparse format of the result (e.g. "csr")
+ by default an appropriate sparse matrix format is returned.
+ This choice is subject to change.
+
+ See Also
+ --------
+ hstack : stack sparse matrices horizontally (column wise)
+
+ Examples
+ --------
+ >>> from scipy.sparse import coo_matrix, vstack
+ >>> A = coo_matrix([[1,2],[3,4]])
+ >>> B = coo_matrix([[5,6]])
+ >>> vstack( [A,B] ).todense()
+ matrix([[1, 2],
+ [3, 4],
+ [5, 6]])
+
+ """
+ return bmat([ [b] for b in blocks ], format=format, dtype=dtype)
+
+def bmat(blocks, format=None, dtype=None):
+ """
+ Build a sparse matrix from sparse sub-blocks
+
+ Parameters
+ ----------
+ blocks
+ grid of sparse matrices with compatible shapes
+ an entry of None implies an all-zero matrix
+ format : sparse format of the result (e.g. "csr")
+ by default an appropriate sparse matrix format is returned.
+ This choice is subject to change.
+
+ Examples
+ --------
+ >>> from scipy.sparse import coo_matrix, bmat
+ >>> A = coo_matrix([[1,2],[3,4]])
+ >>> B = coo_matrix([[5],[6]])
+ >>> C = coo_matrix([[7]])
+ >>> bmat( [[A,B],[None,C]] ).todense()
+ matrix([[1, 2, 5],
+ [3, 4, 6],
+ [0, 0, 7]])
+
+ >>> bmat( [[A,None],[None,C]] ).todense()
+ matrix([[1, 2, 0],
+ [3, 4, 0],
+ [0, 0, 7]])
+
+ """
+
+ blocks = np.asarray(blocks, dtype='object')
+
+ if np.rank(blocks) != 2:
+ raise ValueError('blocks must have rank 2')
+
+ M,N = blocks.shape
+
+ block_mask = np.zeros(blocks.shape, dtype=np.bool)
+ brow_lengths = np.zeros(blocks.shape[0], dtype=np.intc)
+ bcol_lengths = np.zeros(blocks.shape[1], dtype=np.intc)
+
+ # convert everything to COO format
+ for i in range(M):
+ for j in range(N):
+ if blocks[i,j] is not None:
+ A = coo_matrix(blocks[i,j])
+ blocks[i,j] = A
+ block_mask[i,j] = True
+
+ if brow_lengths[i] == 0:
+ brow_lengths[i] = A.shape[0]
+ else:
+ if brow_lengths[i] != A.shape[0]:
+ raise ValueError('blocks[%d,:] has incompatible row dimensions' % i)
+
+ if bcol_lengths[j] == 0:
+ bcol_lengths[j] = A.shape[1]
+ else:
+ if bcol_lengths[j] != A.shape[1]:
+ raise ValueError('blocks[:,%d] has incompatible column dimensions' % j)
+
+
+ # ensure that at least one value in each row and col is not None
+ if brow_lengths.min() == 0:
+ raise ValueError('blocks[%d,:] is all None' % brow_lengths.argmin() )
+ if bcol_lengths.min() == 0:
+ raise ValueError('blocks[:,%d] is all None' % bcol_lengths.argmin() )
+
+ nnz = sum([ A.nnz for A in blocks[block_mask] ])
+ if dtype is None:
+ dtype = upcast( *tuple([A.dtype for A in blocks[block_mask]]) )
+
+ row_offsets = np.concatenate(([0], np.cumsum(brow_lengths)))
+ col_offsets = np.concatenate(([0], np.cumsum(bcol_lengths)))
+
+ data = np.empty(nnz, dtype=dtype)
+ row = np.empty(nnz, dtype=np.intc)
+ col = np.empty(nnz, dtype=np.intc)
+
+ nnz = 0
+ for i in range(M):
+ for j in range(N):
+ if blocks[i,j] is not None:
+ A = blocks[i,j]
+ data[nnz:nnz + A.nnz] = A.data
+ row[nnz:nnz + A.nnz] = A.row
+ col[nnz:nnz + A.nnz] = A.col
+
+ row[nnz:nnz + A.nnz] += row_offsets[i]
+ col[nnz:nnz + A.nnz] += col_offsets[j]
+
+ nnz += A.nnz
+
+ shape = (np.sum(brow_lengths), np.sum(bcol_lengths))
+ return coo_matrix((data, (row, col)), shape=shape).asformat(format)
+
+def rand(m, n, density=0.01, format="coo", dtype=None):
+ """Generate a sparse matrix of the given shape and density with uniformely
+ distributed values.
+
+ Parameters
+ ----------
+ m, n: int
+ shape of the matrix
+ density: real
+ density of the generated matrix: density equal to one means a full
+ matrix, density of 0 means a matrix with no non-zero items.
+ format: str
+ sparse matrix format.
+ dtype: dtype
+ type of the returned matrix values.
+
+ Notes
+ -----
+ Only float types are supported for now.
+ """
+ if density < 0 or density > 1:
+ raise ValueError("density expected to be 0 <= density <= 1")
+ if dtype and not dtype in [np.float32, np.float64, np.longdouble]:
+ raise NotImplementedError("type %s not supported" % dtype)
+
+ mn = m * n
+
+ # XXX: sparse uses intc instead of intp...
+ tp = np.intp
+ if mn > np.iinfo(tp).max:
+ msg = """\
+Trying to generate a random sparse matrix such as the product of dimensions is
+greater than %d - this is not supported on this machine
+"""
+ raise ValueError(msg % np.iinfo(tp).max)
+
+ # Number of non zero values
+ k = long(density * m * n)
+
+ # Generate a few more values than k so that we can get unique values
+ # afterwards.
+ # XXX: one could be smarter here
+ mlow = 5
+ fac = 1.02
+ gk = min(k + mlow, fac * k)
+
+ def _gen_unique_rand(_gk):
+ id = np.random.rand(_gk)
+ return np.unique(np.floor(id * mn))[:k]
+
+ id = _gen_unique_rand(gk)
+ while id.size < k:
+ gk *= 1.05
+ id = _gen_unique_rand(gk)
+
+ j = np.floor(id * 1. / m).astype(tp)
+ i = (id - j * m).astype(tp)
+ vals = np.random.rand(k).astype(dtype)
+ return coo_matrix((vals, (i, j)), shape=(m, n)).asformat(format)
+
+#################################
+# Deprecated functions
+################################
+
+__all__ += [ 'speye','spidentity', 'spkron', 'lil_eye', 'lil_diags' ]
+
+spkron = np.deprecate(kron, old_name='spkron', new_name='scipy.sparse.kron')
+speye = np.deprecate(eye, old_name='speye', new_name='scipy.sparse.eye')
+spidentity = np.deprecate(identity, old_name='spidentity',
+ new_name='scipy.sparse.identity')
+
+
+def lil_eye((r,c), k=0, dtype='d'):
+ """Generate a lil_matrix of dimensions (r,c) with the k-th
+ diagonal set to 1.
+
+ Parameters
+ ----------
+
+ r,c : int
+ row and column-dimensions of the output.
+ k : int
+ - diagonal offset. In the output matrix,
+ - out[m,m+k] == 1 for all m.
+ dtype : dtype
+ data-type of the output array.
+
+ """
+ warn("lil_eye is deprecated." \
+ "use scipy.sparse.eye(r, c, k, format='lil') instead", \
+ DeprecationWarning)
+ return eye(r, c, k, dtype=dtype, format='lil')
+
+
+#TODO remove this function
+def lil_diags(diags, offsets, (m,n), dtype='d'):
+ """
+ Generate a lil_matrix with the given diagonals.
+
+ Parameters
+ ----------
+ diags : list of list of values e.g. [[1,2,3],[4,5]]
+ values to be placed on each indicated diagonal.
+ offsets : list of ints
+ diagonal offsets. This indicates the diagonal on which
+ the given values should be placed.
+ (r,c) : tuple of ints
+ row and column dimensions of the output.
+ dtype : dtype
+ output data-type.
+
+ Examples
+ --------
+
+ >>> lil_diags([[1,2,3],[4,5],[6]],[0,1,2],(3,3)).todense()
+ matrix([[ 1., 4., 6.],
+ [ 0., 2., 5.],
+ [ 0., 0., 3.]])
+
+ """
+ offsets_unsorted = list(offsets)
+ diags_unsorted = list(diags)
+ if len(diags) != len(offsets):
+ raise ValueError("Number of diagonals provided should "
+ "agree with offsets.")
+
+ sort_indices = np.argsort(offsets_unsorted)
+ diags = [diags_unsorted[k] for k in sort_indices]
+ offsets = [offsets_unsorted[k] for k in sort_indices]
+
+ for i,k in enumerate(offsets):
+ if len(diags[i]) < m-abs(k):
+ raise ValueError("Not enough values specified to fill "
+ "diagonal %s." % k)
+
+ out = lil_matrix((m,n),dtype=dtype)
+
+ from itertools import izip
+ for k,diag in izip(offsets,diags):
+ for ix,c in enumerate(xrange(np.clip(k,0,n),np.clip(m+k,0,n))):
+ out.rows[c-k].append(c)
+ out.data[c-k].append(diag[ix])
+ return out
+
diff --git a/cobra/oven/danielhyduke/jython/scipy/sparse/csr.py b/cobra/oven/danielhyduke/jython/scipy/sparse/csr.py
new file mode 100644
index 0000000..b152dc1
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/sparse/csr.py
@@ -0,0 +1,652 @@
+# This file was automatically generated by SWIG (http://www.swig.org).
+# Version 1.3.36
+#
+# Don't modify this file, modify the SWIG interface instead.
+# This file is compatible with both classic and new-style classes.
+
+import _csr
+import new
+new_instancemethod = new.instancemethod
+try:
+ _swig_property = property
+except NameError:
+ pass # Python < 2.2 doesn't have 'property'.
+def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
+ if (name == "thisown"): return self.this.own(value)
+ if (name == "this"):
+ if type(value).__name__ == 'PySwigObject':
+ self.__dict__[name] = value
+ return
+ method = class_type.__swig_setmethods__.get(name,None)
+ if method: return method(self,value)
+ if (not static) or hasattr(self,name):
+ self.__dict__[name] = value
+ else:
+ raise AttributeError("You cannot add attributes to %s" % self)
+
+def _swig_setattr(self,class_type,name,value):
+ return _swig_setattr_nondynamic(self,class_type,name,value,0)
+
+def _swig_getattr(self,class_type,name):
+ if (name == "thisown"): return self.this.own()
+ method = class_type.__swig_getmethods__.get(name,None)
+ if method: return method(self)
+ raise AttributeError,name
+
+def _swig_repr(self):
+ try: strthis = "proxy of " + self.this.__repr__()
+ except: strthis = ""
+ return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
+
+import types
+try:
+ _object = types.ObjectType
+ _newclass = 1
+except AttributeError:
+ class _object : pass
+ _newclass = 0
+del types
+
+
+
+def expandptr(*args):
+ """expandptr(int n_row, int Ap, int Bi)"""
+ return _csr.expandptr(*args)
+
+def csr_matmat_pass1(*args):
+ """
+ csr_matmat_pass1(int n_row, int n_col, int Ap, int Aj, int Bp, int Bj,
+ int Cp)
+ """
+ return _csr.csr_matmat_pass1(*args)
+
+def csr_count_blocks(*args):
+ """csr_count_blocks(int n_row, int n_col, int R, int C, int Ap, int Aj) -> int"""
+ return _csr.csr_count_blocks(*args)
+
+def csr_has_sorted_indices(*args):
+ """csr_has_sorted_indices(int n_row, int Ap, int Aj) -> bool"""
+ return _csr.csr_has_sorted_indices(*args)
+
+
+def csr_diagonal(*args):
+ """
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ signed char Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ unsigned char Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, short Ax, short Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ unsigned short Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, int Ax, int Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ unsigned int Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ long long Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ unsigned long long Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, float Ax, float Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, double Ax, double Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ long double Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ npy_cfloat_wrapper Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ npy_cdouble_wrapper Yx)
+ csr_diagonal(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ npy_clongdouble_wrapper Yx)
+ """
+ return _csr.csr_diagonal(*args)
+
+def csr_scale_rows(*args):
+ """
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ signed char Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ unsigned char Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, short Ax, short Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ unsigned short Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, int Ax, int Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ unsigned int Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ long long Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ unsigned long long Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, float Ax, float Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, double Ax, double Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ long double Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ npy_cfloat_wrapper Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ npy_cdouble_wrapper Xx)
+ csr_scale_rows(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ npy_clongdouble_wrapper Xx)
+ """
+ return _csr.csr_scale_rows(*args)
+
+def csr_scale_columns(*args):
+ """
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ signed char Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ unsigned char Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, short Ax, short Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ unsigned short Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, int Ax, int Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ unsigned int Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ long long Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ unsigned long long Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, float Ax, float Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, double Ax, double Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ long double Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ npy_cfloat_wrapper Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ npy_cdouble_wrapper Xx)
+ csr_scale_columns(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ npy_clongdouble_wrapper Xx)
+ """
+ return _csr.csr_scale_columns(*args)
+
+def csr_tocsc(*args):
+ """
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int Bp, int Bi, signed char Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int Bp, int Bi, unsigned char Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, short Ax, int Bp,
+ int Bi, short Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int Bp, int Bi, unsigned short Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, int Ax, int Bp,
+ int Bi, int Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int Bp, int Bi, unsigned int Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int Bp, int Bi, long long Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int Bp, int Bi, unsigned long long Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, float Ax, int Bp,
+ int Bi, float Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, double Ax, int Bp,
+ int Bi, double Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int Bp, int Bi, long double Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int Bp, int Bi, npy_cfloat_wrapper Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int Bp, int Bi, npy_cdouble_wrapper Bx)
+ csr_tocsc(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int Bp, int Bi, npy_clongdouble_wrapper Bx)
+ """
+ return _csr.csr_tocsc(*args)
+
+def csr_tobsr(*args):
+ """
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ signed char Ax, int Bp, int Bj, signed char Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ unsigned char Ax, int Bp, int Bj, unsigned char Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ short Ax, int Bp, int Bj, short Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ unsigned short Ax, int Bp, int Bj, unsigned short Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ int Ax, int Bp, int Bj, int Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ unsigned int Ax, int Bp, int Bj, unsigned int Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ long long Ax, int Bp, int Bj, long long Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ unsigned long long Ax, int Bp, int Bj, unsigned long long Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ float Ax, int Bp, int Bj, float Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ double Ax, int Bp, int Bj, double Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ long double Ax, int Bp, int Bj, long double Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ npy_cfloat_wrapper Ax, int Bp, int Bj, npy_cfloat_wrapper Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ npy_cdouble_wrapper Ax, int Bp, int Bj, npy_cdouble_wrapper Bx)
+ csr_tobsr(int n_row, int n_col, int R, int C, int Ap, int Aj,
+ npy_clongdouble_wrapper Ax, int Bp, int Bj,
+ npy_clongdouble_wrapper Bx)
+ """
+ return _csr.csr_tobsr(*args)
+
+def csr_matmat_pass2(*args):
+ """
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int Bp, int Bj, signed char Bx, int Cp, int Cj,
+ signed char Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int Bp, int Bj, unsigned char Bx, int Cp,
+ int Cj, unsigned char Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, short Ax, int Bp,
+ int Bj, short Bx, int Cp, int Cj, short Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int Bp, int Bj, unsigned short Bx, int Cp,
+ int Cj, unsigned short Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, int Ax, int Bp,
+ int Bj, int Bx, int Cp, int Cj, int Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int Bp, int Bj, unsigned int Bx, int Cp,
+ int Cj, unsigned int Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int Bp, int Bj, long long Bx, int Cp, int Cj,
+ long long Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int Bp, int Bj, unsigned long long Bx,
+ int Cp, int Cj, unsigned long long Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, float Ax, int Bp,
+ int Bj, float Bx, int Cp, int Cj, float Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, double Ax, int Bp,
+ int Bj, double Bx, int Cp, int Cj, double Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int Bp, int Bj, long double Bx, int Cp, int Cj,
+ long double Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int Bp, int Bj, npy_cfloat_wrapper Bx,
+ int Cp, int Cj, npy_cfloat_wrapper Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int Bp, int Bj, npy_cdouble_wrapper Bx,
+ int Cp, int Cj, npy_cdouble_wrapper Cx)
+ csr_matmat_pass2(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int Bp, int Bj, npy_clongdouble_wrapper Bx,
+ int Cp, int Cj, npy_clongdouble_wrapper Cx)
+ """
+ return _csr.csr_matmat_pass2(*args)
+
+def csr_matvec(*args):
+ """
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ signed char Xx, signed char Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ unsigned char Xx, unsigned char Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, short Ax, short Xx,
+ short Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ unsigned short Xx, unsigned short Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, int Ax, int Xx,
+ int Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ unsigned int Xx, unsigned int Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ long long Xx, long long Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ unsigned long long Xx, unsigned long long Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, float Ax, float Xx,
+ float Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, double Ax, double Xx,
+ double Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ long double Xx, long double Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ npy_cfloat_wrapper Xx, npy_cfloat_wrapper Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ npy_cdouble_wrapper Xx, npy_cdouble_wrapper Yx)
+ csr_matvec(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ npy_clongdouble_wrapper Xx, npy_clongdouble_wrapper Yx)
+ """
+ return _csr.csr_matvec(*args)
+
+def csr_matvecs(*args):
+ """
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, signed char Ax,
+ signed char Xx, signed char Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, unsigned char Ax,
+ unsigned char Xx, unsigned char Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, short Ax,
+ short Xx, short Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, unsigned short Ax,
+ unsigned short Xx, unsigned short Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, int Ax,
+ int Xx, int Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, unsigned int Ax,
+ unsigned int Xx, unsigned int Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, long long Ax,
+ long long Xx, long long Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, unsigned long long Ax,
+ unsigned long long Xx,
+ unsigned long long Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, float Ax,
+ float Xx, float Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, double Ax,
+ double Xx, double Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, long double Ax,
+ long double Xx, long double Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ npy_cfloat_wrapper Xx,
+ npy_cfloat_wrapper Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ npy_cdouble_wrapper Xx,
+ npy_cdouble_wrapper Yx)
+ csr_matvecs(int n_row, int n_col, int n_vecs, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ npy_clongdouble_wrapper Xx,
+ npy_clongdouble_wrapper Yx)
+ """
+ return _csr.csr_matvecs(*args)
+
+def csr_elmul_csr(*args):
+ """
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int Bp, int Bj, signed char Bx, int Cp, int Cj,
+ signed char Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int Bp, int Bj, unsigned char Bx, int Cp,
+ int Cj, unsigned char Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, short Ax, int Bp,
+ int Bj, short Bx, int Cp, int Cj, short Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int Bp, int Bj, unsigned short Bx, int Cp,
+ int Cj, unsigned short Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, int Ax, int Bp,
+ int Bj, int Bx, int Cp, int Cj, int Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int Bp, int Bj, unsigned int Bx, int Cp,
+ int Cj, unsigned int Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int Bp, int Bj, long long Bx, int Cp, int Cj,
+ long long Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int Bp, int Bj, unsigned long long Bx,
+ int Cp, int Cj, unsigned long long Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, float Ax, int Bp,
+ int Bj, float Bx, int Cp, int Cj, float Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, double Ax, int Bp,
+ int Bj, double Bx, int Cp, int Cj, double Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int Bp, int Bj, long double Bx, int Cp, int Cj,
+ long double Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int Bp, int Bj, npy_cfloat_wrapper Bx,
+ int Cp, int Cj, npy_cfloat_wrapper Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int Bp, int Bj, npy_cdouble_wrapper Bx,
+ int Cp, int Cj, npy_cdouble_wrapper Cx)
+ csr_elmul_csr(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int Bp, int Bj, npy_clongdouble_wrapper Bx,
+ int Cp, int Cj, npy_clongdouble_wrapper Cx)
+ """
+ return _csr.csr_elmul_csr(*args)
+
+def csr_eldiv_csr(*args):
+ """
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int Bp, int Bj, signed char Bx, int Cp, int Cj,
+ signed char Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int Bp, int Bj, unsigned char Bx, int Cp,
+ int Cj, unsigned char Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, short Ax, int Bp,
+ int Bj, short Bx, int Cp, int Cj, short Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int Bp, int Bj, unsigned short Bx, int Cp,
+ int Cj, unsigned short Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, int Ax, int Bp,
+ int Bj, int Bx, int Cp, int Cj, int Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int Bp, int Bj, unsigned int Bx, int Cp,
+ int Cj, unsigned int Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int Bp, int Bj, long long Bx, int Cp, int Cj,
+ long long Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int Bp, int Bj, unsigned long long Bx,
+ int Cp, int Cj, unsigned long long Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, float Ax, int Bp,
+ int Bj, float Bx, int Cp, int Cj, float Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, double Ax, int Bp,
+ int Bj, double Bx, int Cp, int Cj, double Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int Bp, int Bj, long double Bx, int Cp, int Cj,
+ long double Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int Bp, int Bj, npy_cfloat_wrapper Bx,
+ int Cp, int Cj, npy_cfloat_wrapper Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int Bp, int Bj, npy_cdouble_wrapper Bx,
+ int Cp, int Cj, npy_cdouble_wrapper Cx)
+ csr_eldiv_csr(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int Bp, int Bj, npy_clongdouble_wrapper Bx,
+ int Cp, int Cj, npy_clongdouble_wrapper Cx)
+ """
+ return _csr.csr_eldiv_csr(*args)
+
+def csr_plus_csr(*args):
+ """
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int Bp, int Bj, signed char Bx, int Cp, int Cj,
+ signed char Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int Bp, int Bj, unsigned char Bx, int Cp,
+ int Cj, unsigned char Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, short Ax, int Bp,
+ int Bj, short Bx, int Cp, int Cj, short Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int Bp, int Bj, unsigned short Bx, int Cp,
+ int Cj, unsigned short Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, int Ax, int Bp,
+ int Bj, int Bx, int Cp, int Cj, int Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int Bp, int Bj, unsigned int Bx, int Cp,
+ int Cj, unsigned int Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int Bp, int Bj, long long Bx, int Cp, int Cj,
+ long long Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int Bp, int Bj, unsigned long long Bx,
+ int Cp, int Cj, unsigned long long Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, float Ax, int Bp,
+ int Bj, float Bx, int Cp, int Cj, float Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, double Ax, int Bp,
+ int Bj, double Bx, int Cp, int Cj, double Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int Bp, int Bj, long double Bx, int Cp, int Cj,
+ long double Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int Bp, int Bj, npy_cfloat_wrapper Bx,
+ int Cp, int Cj, npy_cfloat_wrapper Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int Bp, int Bj, npy_cdouble_wrapper Bx,
+ int Cp, int Cj, npy_cdouble_wrapper Cx)
+ csr_plus_csr(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int Bp, int Bj, npy_clongdouble_wrapper Bx,
+ int Cp, int Cj, npy_clongdouble_wrapper Cx)
+ """
+ return _csr.csr_plus_csr(*args)
+
+def csr_minus_csr(*args):
+ """
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int Bp, int Bj, signed char Bx, int Cp, int Cj,
+ signed char Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int Bp, int Bj, unsigned char Bx, int Cp,
+ int Cj, unsigned char Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, short Ax, int Bp,
+ int Bj, short Bx, int Cp, int Cj, short Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int Bp, int Bj, unsigned short Bx, int Cp,
+ int Cj, unsigned short Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, int Ax, int Bp,
+ int Bj, int Bx, int Cp, int Cj, int Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int Bp, int Bj, unsigned int Bx, int Cp,
+ int Cj, unsigned int Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int Bp, int Bj, long long Bx, int Cp, int Cj,
+ long long Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int Bp, int Bj, unsigned long long Bx,
+ int Cp, int Cj, unsigned long long Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, float Ax, int Bp,
+ int Bj, float Bx, int Cp, int Cj, float Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, double Ax, int Bp,
+ int Bj, double Bx, int Cp, int Cj, double Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int Bp, int Bj, long double Bx, int Cp, int Cj,
+ long double Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int Bp, int Bj, npy_cfloat_wrapper Bx,
+ int Cp, int Cj, npy_cfloat_wrapper Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int Bp, int Bj, npy_cdouble_wrapper Bx,
+ int Cp, int Cj, npy_cdouble_wrapper Cx)
+ csr_minus_csr(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int Bp, int Bj, npy_clongdouble_wrapper Bx,
+ int Cp, int Cj, npy_clongdouble_wrapper Cx)
+ """
+ return _csr.csr_minus_csr(*args)
+
+def csr_sort_indices(*args):
+ """
+ csr_sort_indices(int n_row, int Ap, int Aj, signed char Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, unsigned char Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, short Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, unsigned short Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, int Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, unsigned int Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, long long Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, unsigned long long Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, float Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, double Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, long double Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, npy_cfloat_wrapper Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, npy_cdouble_wrapper Ax)
+ csr_sort_indices(int n_row, int Ap, int Aj, npy_clongdouble_wrapper Ax)
+ """
+ return _csr.csr_sort_indices(*args)
+
+def csr_eliminate_zeros(*args):
+ """
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, signed char Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, unsigned char Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, short Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, unsigned short Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, int Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, unsigned int Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, long long Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, float Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, double Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, long double Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax)
+ csr_eliminate_zeros(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax)
+ """
+ return _csr.csr_eliminate_zeros(*args)
+
+def csr_sum_duplicates(*args):
+ """
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, signed char Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, unsigned char Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, short Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, unsigned short Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, int Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, unsigned int Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, long long Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, float Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, double Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, long double Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax)
+ csr_sum_duplicates(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax)
+ """
+ return _csr.csr_sum_duplicates(*args)
+
+def get_csr_submatrix(*args):
+ """
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int ir0, int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(signed char)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int ir0, int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(unsigned char)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, short Ax, int ir0,
+ int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(short)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int ir0, int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(unsigned short)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, int Ax, int ir0,
+ int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(int)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int ir0, int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(unsigned int)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int ir0, int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(long long)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int ir0, int ir1, int ic0, int ic1,
+ std::vector<(int)> Bp, std::vector<(int)> Bj,
+ std::vector<(unsigned long long)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, float Ax, int ir0,
+ int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(float)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, double Ax, int ir0,
+ int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(double)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int ir0, int ir1, int ic0, int ic1, std::vector<(int)> Bp,
+ std::vector<(int)> Bj, std::vector<(long double)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int ir0, int ir1, int ic0, int ic1,
+ std::vector<(int)> Bp, std::vector<(int)> Bj,
+ std::vector<(npy_cfloat_wrapper)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int ir0, int ir1, int ic0, int ic1,
+ std::vector<(int)> Bp, std::vector<(int)> Bj,
+ std::vector<(npy_cdouble_wrapper)> Bx)
+ get_csr_submatrix(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int ir0, int ir1, int ic0, int ic1,
+ std::vector<(int)> Bp, std::vector<(int)> Bj,
+ std::vector<(npy_clongdouble_wrapper)> Bx)
+ """
+ return _csr.get_csr_submatrix(*args)
+
+def csr_sample_values(*args):
+ """
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, signed char Ax,
+ int n_samples, int Bi, int Bj, signed char Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, unsigned char Ax,
+ int n_samples, int Bi, int Bj, unsigned char Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, short Ax, int n_samples,
+ int Bi, int Bj, short Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, unsigned short Ax,
+ int n_samples, int Bi, int Bj, unsigned short Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, int Ax, int n_samples,
+ int Bi, int Bj, int Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, unsigned int Ax,
+ int n_samples, int Bi, int Bj, unsigned int Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, long long Ax,
+ int n_samples, int Bi, int Bj, long long Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, unsigned long long Ax,
+ int n_samples, int Bi, int Bj, unsigned long long Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, float Ax, int n_samples,
+ int Bi, int Bj, float Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, double Ax, int n_samples,
+ int Bi, int Bj, double Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, long double Ax,
+ int n_samples, int Bi, int Bj, long double Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, npy_cfloat_wrapper Ax,
+ int n_samples, int Bi, int Bj, npy_cfloat_wrapper Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, npy_cdouble_wrapper Ax,
+ int n_samples, int Bi, int Bj, npy_cdouble_wrapper Bx)
+ csr_sample_values(int n_row, int n_col, int Ap, int Aj, npy_clongdouble_wrapper Ax,
+ int n_samples, int Bi, int Bj,
+ npy_clongdouble_wrapper Bx)
+ """
+ return _csr.csr_sample_values(*args)
+
diff --git a/cobra/oven/danielhyduke/jython/scipy/sparse/lil.py b/cobra/oven/danielhyduke/jython/scipy/sparse/lil.py
new file mode 100644
index 0000000..3214994
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/sparse/lil.py
@@ -0,0 +1,454 @@
+"""LInked List sparse matrix class
+"""
+
+__docformat__ = "restructuredtext en"
+
+__all__ = ['lil_matrix','isspmatrix_lil']
+
+from bisect import bisect_left
+
+import numpy as np
+
+from base import spmatrix, isspmatrix
+from sputils import getdtype, isshape, issequence, isscalarlike
+
+class lil_matrix(spmatrix):
+ """Row-based linked list sparse matrix
+
+ This is an efficient structure for constructing sparse
+ matrices incrementally.
+
+ This can be instantiated in several ways:
+ lil_matrix(D)
+ with a dense matrix or rank-2 ndarray D
+
+ lil_matrix(S)
+ with another sparse matrix S (equivalent to S.tocsc())
+
+ lil_matrix((M, N), [dtype])
+ to construct an empty matrix with shape (M, N)
+ dtype is optional, defaulting to dtype='d'.
+
+ Notes
+ -----
+
+ Advantages of the LIL format
+ - supports flexible slicing
+ - changes to the matrix sparsity structure are efficient
+
+ Disadvantages of the LIL format
+ - arithmetic operations LIL + LIL are slow (consider CSR or CSC)
+ - slow column slicing (consider CSC)
+ - slow matrix vector products (consider CSR or CSC)
+
+ Intended Usage
+ - LIL is a convenient format for constructing sparse matrices
+ - once a matrix has been constructed, convert to CSR or
+ CSC format for fast arithmetic and matrix vector operations
+ - consider using the COO format when constructing large matrices
+
+ Data Structure
+ - An array (``self.rows``) of rows, each of which is a sorted
+ list of column indices of non-zero elements.
+ - The corresponding nonzero values are stored in similar
+ fashion in ``self.data``.
+
+
+ """
+
+ def __init__(self, arg1, shape=None, dtype=None, copy=False):
+ spmatrix.__init__(self)
+ self.dtype = getdtype(dtype, arg1, default=float)
+
+ # First get the shape
+ if isspmatrix(arg1):
+ if isspmatrix_lil(arg1) and copy:
+ A = arg1.copy()
+ else:
+ A = arg1.tolil()
+
+ if dtype is not None:
+ A = A.astype(dtype)
+
+ self.shape = A.shape
+ self.dtype = A.dtype
+ self.rows = A.rows
+ self.data = A.data
+ elif isinstance(arg1,tuple):
+ if isshape(arg1):
+ if shape is not None:
+ raise ValueError('invalid use of shape parameter')
+ M, N = arg1
+ self.shape = (M,N)
+ self.rows = np.empty((M,), dtype=object)
+ self.data = np.empty((M,), dtype=object)
+ for i in range(M):
+ self.rows[i] = []
+ self.data[i] = []
+ else:
+ raise TypeError('unrecognized lil_matrix constructor usage')
+ else:
+ #assume A is dense
+ try:
+ A = np.asmatrix(arg1)
+ except TypeError:
+ raise TypeError('unsupported matrix type')
+ else:
+ from csr import csr_matrix
+ A = csr_matrix(A, dtype=dtype).tolil()
+
+ self.shape = A.shape
+ self.dtype = A.dtype
+ self.rows = A.rows
+ self.data = A.data
+
+ def __iadd__(self,other):
+ self[:,:] = self + other
+ return self
+
+ def __isub__(self,other):
+ self[:,:] = self - other
+ return self
+
+ def __imul__(self,other):
+ if isscalarlike(other):
+ self[:,:] = self * other
+ return self
+ else:
+ raise NotImplementedError
+
+ def __itruediv__(self,other):
+ if isscalarlike(other):
+ self[:,:] = self / other
+ return self
+ else:
+ raise NotImplementedError
+
+ # Whenever the dimensions change, empty lists should be created for each
+ # row
+
+ def getnnz(self):
+ return sum([len(rowvals) for rowvals in self.data])
+ nnz = property(fget=getnnz)
+
+ def __str__(self):
+ val = ''
+ for i, row in enumerate(self.rows):
+ for pos, j in enumerate(row):
+ val += " %s\t%s\n" % (str((i, j)), str(self.data[i][pos]))
+ return val[:-1]
+
+ def getrowview(self, i):
+ """Returns a view of the 'i'th row (without copying).
+ """
+ new = lil_matrix((1, self.shape[1]), dtype=self.dtype)
+ new.rows[0] = self.rows[i]
+ new.data[0] = self.data[i]
+ return new
+
+ def getrow(self, i):
+ """Returns a copy of the 'i'th row.
+ """
+ new = lil_matrix((1, self.shape[1]), dtype=self.dtype)
+ new.rows[0] = self.rows[i][:]
+ new.data[0] = self.data[i][:]
+ return new
+
+ def _get1(self, i, j):
+
+ if i < 0:
+ i += self.shape[0]
+ if i < 0 or i >= self.shape[0]:
+ raise IndexError('row index out of bounds')
+
+ if j < 0:
+ j += self.shape[1]
+ if j < 0 or j >= self.shape[1]:
+ raise IndexError('column index out of bounds')
+
+ row = self.rows[i]
+ data = self.data[i]
+
+ pos = bisect_left(row, j)
+ if pos != len(data) and row[pos] == j:
+ return data[pos]
+ else:
+ return 0
+
+ def _slicetoseq(self, j, shape):
+ if j.start is not None and j.start < 0:
+ start = shape + j.start
+ elif j.start is None:
+ start = 0
+ else:
+ start = j.start
+ if j.stop is not None and j.stop < 0:
+ stop = shape + j.stop
+ elif j.stop is None:
+ stop = shape
+ else:
+ stop = j.stop
+ j = range(start, stop, j.step or 1)
+ return j
+
+
+ def __getitem__(self, index):
+ """Return the element(s) index=(i, j), where j may be a slice.
+ This always returns a copy for consistency, since slices into
+ Python lists return copies.
+ """
+ try:
+ i, j = index
+ except (AssertionError, TypeError):
+ raise IndexError('invalid index')
+
+ if np.isscalar(i):
+ if np.isscalar(j):
+ return self._get1(i, j)
+ if isinstance(j, slice):
+ j = self._slicetoseq(j, self.shape[1])
+ if issequence(j):
+ return self.__class__([[self._get1(i, jj) for jj in j]])
+ elif issequence(i) and issequence(j):
+ return self.__class__([[self._get1(ii, jj) for (ii, jj) in zip(i, j)]])
+ elif issequence(i) or isinstance(i, slice):
+ if isinstance(i, slice):
+ i = self._slicetoseq(i, self.shape[0])
+ if np.isscalar(j):
+ return self.__class__([[self._get1(ii, j)] for ii in i])
+ if isinstance(j, slice):
+ j = self._slicetoseq(j, self.shape[1])
+ if issequence(j):
+ return self.__class__([[self._get1(ii, jj) for jj in j] for ii in i])
+ else:
+ raise IndexError
+
+ def _insertat2(self, row, data, j, x):
+ """ helper for __setitem__: insert a value in the given row/data at
+ column j. """
+
+ if j < 0: #handle negative column indices
+ j += self.shape[1]
+
+ if j < 0 or j >= self.shape[1]:
+ raise IndexError('column index out of bounds')
+
+ if not np.isscalar(x):
+ raise ValueError('setting an array element with a sequence')
+
+ try:
+ x = self.dtype.type(x)
+ except:
+ raise TypeError('Unable to convert value (%s) to dtype [%s]' % (x,self.dtype.name))
+
+ pos = bisect_left(row, j)
+ if x != 0:
+ if pos == len(row):
+ row.append(j)
+ data.append(x)
+ elif row[pos] != j:
+ row.insert(pos, j)
+ data.insert(pos, x)
+ else:
+ data[pos] = x
+ else:
+ if pos < len(row) and row[pos] == j:
+ del row[pos]
+ del data[pos]
+
+ def _setitem_setrow(self, row, data, j, xrow, xdata, xcols):
+ if isinstance(j, slice):
+ j = self._slicetoseq(j, self.shape[1])
+ if issequence(j):
+ if xcols == len(j):
+ for jj, xi in zip(j, xrange(xcols)):
+ pos = bisect_left(xrow, xi)
+ if pos != len(xdata) and xrow[pos] == xi:
+ self._insertat2(row, data, jj, xdata[pos])
+ else:
+ self._insertat2(row, data, jj, 0)
+ elif xcols == 1: # OK, broadcast across row
+ if len(xdata) > 0 and xrow[0] == 0:
+ val = xdata[0]
+ else:
+ val = 0
+ for jj in j:
+ self._insertat2(row, data, jj,val)
+ else:
+ raise IndexError('invalid index')
+ elif np.isscalar(j):
+ if not xcols == 1:
+ raise ValueError('array dimensions are not compatible for copy')
+ if len(xdata) > 0 and xrow[0] == 0:
+ self._insertat2(row, data, j, xdata[0])
+ else:
+ self._insertat2(row, data, j, 0)
+ else:
+ raise ValueError('invalid column value: %s' % str(j))
+
+ def __setitem__(self, index, x):
+ try:
+ i, j = index
+ except (ValueError, TypeError):
+ raise IndexError('invalid index')
+
+ # shortcut for common case of single entry assign:
+ if np.isscalar(x) and np.isscalar(i) and np.isscalar(j):
+ self._insertat2(self.rows[i], self.data[i], j, x)
+ return
+
+ # shortcut for common case of full matrix assign:
+ if isspmatrix(x):
+ if isinstance(i, slice) and i == slice(None) and \
+ isinstance(j, slice) and j == slice(None):
+ x = lil_matrix(x)
+ self.rows = x.rows
+ self.data = x.data
+ return
+
+ if isinstance(i, tuple): # can't index lists with tuple
+ i = list(i)
+
+ if np.isscalar(i):
+ rows = [self.rows[i]]
+ datas = [self.data[i]]
+ else:
+ rows = self.rows[i]
+ datas = self.data[i]
+
+ x = lil_matrix(x, copy=False)
+ xrows, xcols = x.shape
+ if xrows == len(rows): # normal rectangular copy
+ for row, data, xrow, xdata in zip(rows, datas, x.rows, x.data):
+ self._setitem_setrow(row, data, j, xrow, xdata, xcols)
+ elif xrows == 1: # OK, broadcast down column
+ for row, data in zip(rows, datas):
+ self._setitem_setrow(row, data, j, x.rows[0], x.data[0], xcols)
+
+ # needed to pass 'test_lil_sequence_assignement' unit test:
+ # -- set row from column of entries --
+ elif xcols == len(rows):
+ x = x.T
+ for row, data, xrow, xdata in zip(rows, datas, x.rows, x.data):
+ self._setitem_setrow(row, data, j, xrow, xdata, xrows)
+ else:
+ raise IndexError('invalid index')
+
+ def _mul_scalar(self, other):
+ if other == 0:
+ # Multiply by zero: return the zero matrix
+ new = lil_matrix(self.shape, dtype=self.dtype)
+ else:
+ new = self.copy()
+ # Multiply this scalar by every element.
+ new.data = np.array([[val*other for val in rowvals] for
+ rowvals in new.data], dtype=object)
+ return new
+
+ def __truediv__(self, other): # self / other
+ if isscalarlike(other):
+ new = self.copy()
+ # Divide every element by this scalar
+ new.data = np.array([[val/other for val in rowvals] for
+ rowvals in new.data], dtype=object)
+ return new
+ else:
+ return self.tocsr() / other
+
+## This code doesn't work with complex matrices
+# def multiply(self, other):
+# """Point-wise multiplication by another lil_matrix.
+#
+# """
+# if np.isscalar(other):
+# return self.__mul__(other)
+#
+# if isspmatrix_lil(other):
+# reference,target = self,other
+#
+# if reference.shape != target.shape:
+# raise ValueError("Dimensions do not match.")
+#
+# if len(reference.data) > len(target.data):
+# reference,target = target,reference
+#
+# new = lil_matrix(reference.shape)
+# for r,row in enumerate(reference.rows):
+# tr = target.rows[r]
+# td = target.data[r]
+# rd = reference.data[r]
+# L = len(tr)
+# for c,column in enumerate(row):
+# ix = bisect_left(tr,column)
+# if ix < L and tr[ix] == column:
+# new.rows[r].append(column)
+# new.data[r].append(rd[c] * td[ix])
+# return new
+# else:
+# raise ValueError("Point-wise multiplication only allowed "
+# "with another lil_matrix.")
+
+ def copy(self):
+ from copy import deepcopy
+ new = lil_matrix(self.shape, dtype=self.dtype)
+ new.data = deepcopy(self.data)
+ new.rows = deepcopy(self.rows)
+ return new
+
+ def reshape(self,shape):
+ new = lil_matrix(shape, dtype=self.dtype)
+ j_max = self.shape[1]
+ for i,row in enumerate(self.rows):
+ for col,j in enumerate(row):
+ new_r,new_c = np.unravel_index(i*j_max + j,shape)
+ new[new_r,new_c] = self[i,j]
+ return new
+
+ def toarray(self):
+ d = np.zeros(self.shape, dtype=self.dtype)
+ for i, row in enumerate(self.rows):
+ for pos, j in enumerate(row):
+ d[i, j] = self.data[i][pos]
+ return d
+
+ def transpose(self):
+ return self.tocsr().transpose().tolil()
+
+ def tolil(self, copy=False):
+ if copy:
+ return self.copy()
+ else:
+ return self
+
+ def tocsr(self):
+ """ Return Compressed Sparse Row format arrays for this matrix.
+ """
+
+ indptr = np.asarray([len(x) for x in self.rows], dtype=np.intc)
+ indptr = np.concatenate( (np.array([0], dtype=np.intc), np.cumsum(indptr)) )
+
+ nnz = indptr[-1]
+
+ indices = []
+ for x in self.rows:
+ indices.extend(x)
+ indices = np.asarray(indices, dtype=np.intc)
+
+ data = []
+ for x in self.data:
+ data.extend(x)
+ data = np.asarray(data, dtype=self.dtype)
+
+ from csr import csr_matrix
+ return csr_matrix((data, indices, indptr), shape=self.shape)
+
+ def tocsc(self):
+ """ Return Compressed Sparse Column format arrays for this matrix.
+ """
+ return self.tocsr().tocsc()
+
+
+from sputils import _isinstance
+
+def isspmatrix_lil( x ):
+ return _isinstance(x, lil_matrix)
diff --git a/cobra/oven/danielhyduke/jython/scipy/sparse/sputils.py b/cobra/oven/danielhyduke/jython/scipy/sparse/sputils.py
new file mode 100644
index 0000000..4e0edcf
--- /dev/null
+++ b/cobra/oven/danielhyduke/jython/scipy/sparse/sputils.py
@@ -0,0 +1,133 @@
+""" Utility functions for sparse matrix module
+"""
+
+__all__ = ['upcast','getdtype','isscalarlike','isintlike',
+ 'isshape','issequence','isdense']
+
+import numjy as np
+
+# keep this list syncronized with sparsetools
+#supported_dtypes = ['int8', 'uint8', 'int16', 'uint16', 'int32', 'uint32',
+# 'int64', 'uint64', 'float32', 'float64',
+# 'complex64', 'complex128']
+supported_dtypes = ['int8','uint8','short','ushort','intc','uintc',
+ 'longlong','ulonglong','single','double','longdouble',
+ 'csingle','cdouble','clongdouble']
+supported_dtypes = [ np.typeDict[x] for x in supported_dtypes]
+
+def upcast(*args):
+ """Returns the nearest supported sparse dtype for the
+ combination of one or more types.
+
+ upcast(t0, t1, ..., tn) -> T where T is a supported dtype
+
+ Examples
+ --------
+
+ >>> upcast('int32')
+ <type 'numpy.int32'>
+ >>> upcast('bool')
+ <type 'numpy.int8'>
+ >>> upcast('int32','float32')
+ <type 'numpy.float64'>
+ >>> upcast('bool',complex,float)
+ <type 'numpy.complex128'>
+
+ """
+ sample = np.array([0],dtype=args[0])
+ for t in args[1:]:
+ sample = sample + np.array([0],dtype=t)
+
+ upcast = sample.dtype
+
+ for t in supported_dtypes:
+ if np.can_cast(sample.dtype,t):
+ return t
+
+ raise TypeError,'no supported conversion for types: %s' % args
+
+
+def to_native(A):
+ return np.asarray(A,dtype=A.dtype.newbyteorder('native'))
+
+
+def getdtype(dtype, a=None, default=None):
+ """Function used to simplify argument processing. If 'dtype' is not
+ specified (is None), returns a.dtype; otherwise returns a np.dtype
+ object created from the specified dtype argument. If 'dtype' and 'a'
+ are both None, construct a data type out of the 'default' parameter.
+ Furthermore, 'dtype' must be in 'allowed' set.
+ """
+ #TODO is this really what we want?
+ canCast = True
+ if dtype is None:
+ try:
+ newdtype = a.dtype
+ except AttributeError:
+ if default is not None:
+ newdtype = np.dtype(default)
+ canCast = False
+ else:
+ raise TypeError, "could not interpret data type"
+ else:
+ newdtype = np.dtype(dtype)
+
+ return newdtype
+
+def isscalarlike(x):
+ """Is x either a scalar, an array scalar, or a 0-dim array?"""
+ return np.isscalar(x) or (isdense(x) and x.ndim == 0)
+
+def isintlike(x):
+ """Is x appropriate as an index into a sparse matrix? Returns True
+ if it can be cast safely to a machine int.
+ """
+ if issequence(x):
+ return False
+ else:
+ try:
+ if int(x) == x:
+ return True
+ else:
+ return False
+ except TypeError:
+ return False
+
+def isshape(x):
+ """Is x a valid 2-tuple of dimensions?
+ """
+ try:
+ # Assume it's a tuple of matrix dimensions (M, N)
+ (M, N) = x
+ except:
+ return False
+ else:
+ if isintlike(M) and isintlike(N):
+ if np.rank(M) == 0 and np.rank(N) == 0:
+ return True
+ return False
+
+
+def issequence(t):
+ #Modded for numjy
+ if isinstance(t, (list, tuple)):
+ return True
+ elif hassattr(t, '._M'):
+ return (isinstance(t._M, np.ndarray) and (t.ndim == 1))
+ else:
+ return False
+
+
+def _isinstance(x, _class):
+ ##
+ # This makes scipy.sparse.sparse.csc_matrix == __main__.csc_matrix.
+ c1 = ('%s' % x.__class__).split( '.' )
+ c2 = ('%s' % _class).split( '.' )
+ aux = c1[-1] == c2[-1]
+ return isinstance(x, _class) or aux
+
+def isdense(x):
+ #Modded for numjy
+ if hasattr(x,'_M'):
+ return _isinstance(x._M, np.ndarray)
+ raise Exception('The matrix must be created by numjy')
diff --git a/cobra/oven/danielhyduke/query/__init__.py b/cobra/oven/danielhyduke/query/__init__.py
new file mode 100644
index 0000000..e7bee6d
--- /dev/null
+++ b/cobra/oven/danielhyduke/query/__init__.py
@@ -0,0 +1 @@
+from query import *
diff --git a/cobra/oven/danielhyduke/query/query.py b/cobra/oven/danielhyduke/query/query.py
new file mode 100644
index 0000000..353258b
--- /dev/null
+++ b/cobra/oven/danielhyduke/query/query.py
@@ -0,0 +1,63 @@
+#cobra.query.query.py
+#Will serve as a location to house the growing number of
+#simple query functions attached to cobra.Model
+
+#NOTE: Many of the find functions are gone because Reactions,
+#Metabolites, and Genes are now away of each other.
+
+import re
+#####
+def print_reactions_involving_metabolite(cobra_model, the_metabolites):
+ """Update to allow for multiple metabolite search
+
+ cobra_model: A cobra.Model object
+
+ the_metabolites: A list of cobra.Metabolites or metabolite ids that are in
+ cobra_metabolites.
+
+ #TODO: Move this to the Metabolite class
+
+ """
+ if hasattr(the_metabolites, 'id'):
+ the_metabolites = [the_metabolites]
+ elif not hasattr(the_metabolites, '__iter__'):
+ the_metabolites = [the_metabolites]
+ if not hasattr(the_metabolites[0], 'id'):
+ the_metabolites = [cobra_model.metabolites[cobra_model.metabolites.index(x)]
+ for x in the_metabolites]
+
+ for the_metabolite in the_metabolties:
+ for the_reaction in the_metabolite._reaction:
+ print the_reaction.reaction
+
+
+def get_translation_reactions(cobra_model, genes_of_interest):
+ """Find the translation elongation reactions for a set of genes
+ in a cobra model. Related to ME-model extensions
+
+ cobra_model: A cobra.Model object.
+
+ genes_of_interest: A list of genes from cobra_model.genes.
+
+ """
+ gene_translation_reactions = defaultdict(list)
+ for the_reaction in cobra_model.reactions:
+ if 'translation_elongation' in the_reaction:
+ for the_gene in genes_of_interest:
+ if the_gene in the_reaction:
+ gene_translation_reactions[the_gene].append(the_reaction)
+ continue
+ return gene_translation_reactions
+
+
+if __name__ == '__main__':
+ from cPickle import load
+ from time import time
+ solver = 'glpk'
+ test_directory = '../test/data/'
+ with open(test_directory + 'salmonella.pickle') as in_file:
+ cobra_model = load(in_file)
+
+ #TODO: Add in tests for each function
+ print 'Need to add in tests for %s'%repr(['print_reactions_involving_metabolite'])
+
diff --git a/cobra/solvers/__init__.py b/cobra/solvers/__init__.py
new file mode 100644
index 0000000..7f2be06
--- /dev/null
+++ b/cobra/solvers/__init__.py
@@ -0,0 +1,121 @@
+# Solvers are expected to follow the following interface
+# create_problem: makes a solver problem object from a cobra.model and
+# sets parameters (if possible)
+
+# format_solution: Returns a cobra.Solution object. This is where one
+# should dress the cobra.model with results if desired.
+
+# get_status: converts a solver specific status flag to a cobra pie flag.
+
+# set_parameter: takes solver specific parameter strings and sets them.
+
+# solve: solves the optimization problem. this is where one should put
+# in logic on what to try if the problem
+# isn't optimal
+
+# solve_problem: dumb and fast which will set parameters, if provided
+
+# update_problem: changes bounds and linear objective coefficient of the
+# solver specific problem file, given the complementary cobra.model
+
+# This attempts to import all working solvers in this directory
+
+from __future__ import absolute_import
+from warnings import warn
+from os import listdir, path
+
+solver_dict = {}
+possible_solvers = set()
+
+
+def add_solver(solver_name, use_name=None):
+ """add a solver module to the solvers"""
+ exec("from . import " + solver_name)
+ solver = eval(solver_name)
+ if use_name is None:
+ if hasattr(solver, "solver_name"):
+ use_name = solver.solver_name
+ else:
+ use_name = solver_name
+ solver_dict[use_name] = eval(solver_name)
+
+for i in listdir(path.dirname(path.abspath(__file__))):
+ if i.startswith("_") or i.startswith(".") or i.startswith('legacy'):
+ continue
+ if i.startswith("parameters"):
+ continue
+ if i.endswith(".py") or i.endswith(".so") or i.endswith(".pyc") \
+ or i.endswith(".pyd"):
+ possible_solvers.add(i.split(".")[0])
+
+if "wrappers" in possible_solvers:
+ possible_solvers.remove("wrappers")
+
+for solver in possible_solvers:
+ try:
+ add_solver(solver)
+ except:
+ pass
+ del solver
+
+if len(solver_dict) == 0:
+ warn("No LP solvers found")
+
+# clean up the namespace
+del path, listdir, warn, i, possible_solvers
+
+
+class SolverNotFound(Exception):
+ None
+
+
+def get_solver_name(mip=False, qp=False):
+ """returns a solver name
+
+ raises SolverNotFound if a suitable solver is not found
+ """
+ if len(solver_dict) == 0:
+ raise SolverNotFound("no solvers installed")
+ # glpk only does lp, not qp. Gurobi and cplex are better at mip
+ mip_order = ["gurobi", "cplex", "cglpk", "glpk"]
+ lp_order = ["cglpk", "cplex", "glpk", "gurobi"]
+ qp_order = ["gurobi", "cplex"]
+
+ if mip is False and qp is False:
+ for solver_name in lp_order:
+ if solver_name in solver_dict:
+ return solver_name
+ elif qp: # mip does not yet matter for this determination
+ for solver_name in qp_order:
+ if solver_name in solver_dict:
+ return solver_name
+ # see if any solver defines set_quadratic_objective
+ for solver_name in solver_dict:
+ if hasattr(solver_dict[solver_name], "set_quadratic_objective"):
+ return solver_name
+ raise SolverNotFound("no qp-capable solver found")
+ else:
+ for solver_name in mip_order:
+ if solver_name in solver_dict:
+ return solver_name
+ for solver_name in solver_dict:
+ if hasattr(solver_dict[solver_name], "_SUPPORTS_MIP"):
+ return solver_name
+ raise SolverNotFound("no mip-capable solver found")
+
+
+def optimize(cobra_model, solver=None, **kwargs):
+ """Wrapper to optimization solvers
+
+ solver : str
+ Name of the LP solver from solver_dict to use. If None is given, the
+ default one will be used
+
+ """
+ # If the default solver is not installed then use one of the others
+ if solver is None:
+ qp = "quadratic_component" in kwargs and \
+ kwargs["quadratic_component"] is not None
+ solver = get_solver_name(qp=qp)
+
+ return solver_dict[solver].solve(cobra_model, **kwargs)
diff --git a/cobra/solvers/cglpk.pyx b/cobra/solvers/cglpk.pyx
new file mode 100644
index 0000000..7a35ae0
--- /dev/null
+++ b/cobra/solvers/cglpk.pyx
@@ -0,0 +1,480 @@
+# distutils: libraries=glpk
+# cython: embedsignature=True
+
+from glpk cimport *
+from libc.stdlib cimport malloc, free
+from cpython cimport bool
+from cpython.version cimport PY_MAJOR_VERSION
+
+from tempfile import NamedTemporaryFile as _NamedTemporaryFile # for pickling
+from os import unlink as _unlink
+from warnings import warn as _warn
+
+__glpk_version__ = str(glp_version())
+_SUPPORTS_MILP = True
+solver_name = "cglpk"
+
+__doc__ = """Bindings to GLPK
+
+The GNU Linear Programming Kit (GLPK) is released under the GPL.
+The source can be downloaded from http://www.gnu.org/software/glpk/
+
+The GNU Multiple Precision Arithmetic Library (GMP) is released under the GPL.
+The source can be downloaded from https://gmplib.org/
+
+"""
+
+cdef dict ERROR_CODES = {
+ GLP_EBADB: "GLP_EBADB",
+ GLP_ESING: "GLP_ESING",
+ GLP_ECOND: "GLP_ECOND",
+ GLP_EBOUND: "GLP_EBOUND",
+ GLP_EFAIL: "GLP_EFAIL",
+ GLP_EOBJLL: "GLP_EOBJLL",
+ GLP_EOBJUL: "GLP_EOBJUL",
+ GLP_EITLIM: "GLP_EITLIM",
+ GLP_ETMLIM: "GLP_ETMLIM",
+ GLP_ENOPFS: "GLP_ENOPFS",
+ GLP_ENODFS: "GLP_ENODFS",
+ GLP_EROOT: "GLP_EROOT",
+ GLP_ESTOP: "GLP_ESTOP",
+ GLP_EMIPGAP: "GLP_EMIPGAP",
+ GLP_ENOFEAS: "GLP_ENOFEAS",
+ GLP_ENOCVG: "GLP_ENOCVG",
+ GLP_EINSTAB: "GLP_EINSTAB",
+ GLP_EDATA: "GLP_EDATA",
+ GLP_ERANGE: "GLP_ERANGE"
+}
+
+cdef dict ERROR_MESSAGES = {
+ GLP_EBADB: "invalid basis",
+ GLP_ESING: "singular matrix",
+ GLP_ECOND: "ill-conditioned matrix",
+ GLP_EBOUND: "invalid bounds",
+ GLP_EFAIL: "solver failed",
+ GLP_EOBJLL: "objective lower limit reached",
+ GLP_EOBJUL: "objective upper limit reached",
+ GLP_EITLIM: "iteration limit exceeded",
+ GLP_ETMLIM: "time limit exceeded",
+ GLP_ENOPFS: "no primal feasible solution",
+ GLP_ENODFS: "no dual feasible solution",
+ GLP_EROOT: "root LP optimum not provided",
+ GLP_ESTOP: "search terminated by application",
+ GLP_EMIPGAP: "relative mip gap tolerance reached",
+ GLP_ENOFEAS: "no primal/dual feasible solution",
+ GLP_ENOCVG: "no convergence",
+ GLP_EINSTAB: "numerical instability",
+ GLP_EDATA: "invalid data",
+ GLP_ERANGE: "result out of range"
+}
+
+cdef dict METHODS = {
+ "auto": GLP_DUALP,
+ "primal": GLP_PRIMAL,
+ "dual": GLP_DUAL
+}
+
+
+cdef int downcast_pos_size(Py_ssize_t size):
+ if size > INT_MAX:
+ raise ValueError("Integer overflow %d > %d" % (size, INT_MAX))
+ else:
+ return <int> size
+
+
+cdef check_error(int result):
+ if result == 0:
+ return
+ if result not in ERROR_CODES:
+ raise RuntimeError("glp_simplex failed with unknown error code 0x%x" %
+ result)
+ raise RuntimeError("glp_simplex failed with error code %s: %s" %
+ (ERROR_CODES[result], ERROR_MESSAGES[result]))
+
+
+# Do not want to print out to terminal. Even when not verbose, output
+# will be redirected through the hook.
+glp_term_out(GLP_OFF)
+
+
+cdef int hook(void *info, const char *s):
+ """function to redirect sdout to python stdout"""
+ print(s)
+ return 1
+
+
+cdef class GLP:
+ cdef glp_prob *glp
+ cdef glp_smcp parameters
+ cdef glp_iocp integer_parameters
+ cdef public bool exact
+
+ # cython related allocation/dellocation functions
+ def __cinit__(self):
+ self.glp = glp_create_prob()
+ glp_set_obj_dir(self.glp, GLP_MAX) # default is maximize
+ glp_init_smcp(&self.parameters)
+ glp_init_iocp(&self.integer_parameters)
+ self.exact = False
+
+ def __dealloc__(self):
+ glp_delete_prob(self.glp)
+
+ def __init__(self, cobra_model=None):
+ cdef int bound_type, index, n, n_values
+ cdef glp_prob *glp
+ cdef int *c_rows
+ cdef int *c_cols
+ cdef double *c_values
+
+ # initialize parameters
+ self.parameters.msg_lev = GLP_MSG_OFF
+ glp_term_hook(NULL, NULL)
+
+ if cobra_model is None:
+ return
+ glp = self.glp
+ glp_add_rows(glp, downcast_pos_size(len(cobra_model.metabolites)))
+ glp_add_cols(glp, downcast_pos_size(len(cobra_model.reactions)))
+
+ metabolite_id_to_index = {r.id: index for index, r
+ in enumerate(cobra_model.metabolites, 1)}
+
+ linear_constraint_rows = []
+ linear_constraint_cols = []
+ linear_constraint_values = []
+
+ # set metabolite/consraint bounds
+ for index, metabolite in enumerate(cobra_model.metabolites, 1):
+ b = float(metabolite._bound)
+ c = metabolite._constraint_sense
+ if c == 'E':
+ bound_type = GLP_FX # Set metabolite to steady state levels
+ elif c == 'L':
+ bound_type = GLP_UP # x < 2 <==> x has an upper bound of 2
+ elif c == 'G':
+ bound_type = GLP_LO # x > 2 <==> x has a lower bound of 2
+ else:
+ raise ValueError("unsupported bound type: %s" % c)
+ glp_set_row_bnds(glp, index, bound_type, b, b)
+
+ # set reaction/varaiable bounds
+ for index, reaction in enumerate(cobra_model.reactions, 1):
+ if reaction.variable_kind == "integer":
+ if reaction.lower_bound == 0 and reaction.upper_bound == 1:
+ glp_set_col_kind(self.glp, index, GLP_BV) # binary
+ else:
+ glp_set_col_kind(self.glp, index, GLP_IV)
+ if reaction.lower_bound == reaction.upper_bound:
+ bound_type = GLP_FX
+ else:
+ bound_type = GLP_DB
+ glp_set_col_bnds(glp, index, bound_type,
+ float(reaction.lower_bound),
+ float(reaction.upper_bound))
+ glp_set_obj_coef(glp, index, float(reaction.objective_coefficient))
+
+ for metabolite, coefficient in reaction._metabolites.iteritems():
+ metabolite_index = metabolite_id_to_index[metabolite.id]
+ linear_constraint_rows.append(metabolite_index)
+ linear_constraint_cols.append(index)
+ linear_constraint_values.append(coefficient)
+
+ # set constraint marix
+ # first copy the python lists to c arrays
+ n_values = downcast_pos_size(len(linear_constraint_rows))
+ c_cols = <int *> malloc((n_values + 1) * sizeof(int))
+ c_rows = <int *> malloc((n_values + 1) * sizeof(int))
+ c_values = <double *> malloc((n_values + 1) * sizeof(double))
+ if c_rows is NULL or c_rows is NULL or c_values is NULL:
+ raise MemoryError()
+ for index in range(n_values):
+ c_rows[index + 1] = linear_constraint_rows[index]
+ c_cols[index + 1] = linear_constraint_cols[index]
+ c_values[index + 1] = float(linear_constraint_values[index])
+ # actually set the values
+ glp_load_matrix(glp, n_values, c_rows, c_cols, c_values)
+ # free the c arrays
+ free(c_rows)
+ free(c_cols)
+ free(c_values)
+
+ # problem creation and modification
+ @classmethod
+ def create_problem(cls, cobra_model, objective_sense="maximize"):
+ problem = cls(cobra_model)
+ problem.set_objective_sense(objective_sense)
+ return problem
+
+ cpdef change_variable_bounds(self, int index, double lower_bound,
+ double upper_bound):
+ cdef int bound_type = GLP_FX if lower_bound == upper_bound else GLP_DB
+ assert index >= 0
+ glp_set_col_bnds(self.glp, index + 1, bound_type, lower_bound, upper_bound)
+
+ def change_coefficient(self, int met_index, int rxn_index, double value):
+ cdef int col_length, i
+ cdef int *indexes
+ cdef double *values
+ # glpk uses 1 indexing
+ met_index += 1
+ rxn_index += 1
+ # we first have to get the old column
+ col_length = glp_get_mat_col(self.glp, rxn_index, NULL, NULL)
+ indexes = <int *> malloc((col_length + 2) * sizeof(int))
+ values = <double *> malloc((col_length + 2) * sizeof(double))
+ if indexes == NULL or values == NULL:
+ raise MemoryError()
+ glp_get_mat_col(self.glp, rxn_index, indexes, values)
+ # search for duplicate
+ for i in range(col_length):
+ # if a duplicate exists replace that value and exit
+ if indexes[i + 1] == met_index:
+ values[i + 1] = value
+ glp_set_mat_col(self.glp, rxn_index, col_length, indexes, values)
+ return
+ # need to add a new entry
+ indexes[col_length + 1] = met_index
+ values[col_length + 1] = value
+ glp_set_mat_col(self.glp, rxn_index, col_length + 1, indexes, values)
+ free(indexes)
+ free(values)
+
+ def solve_problem(self, **solver_parameters):
+ cdef int result
+ cdef glp_smcp parameters = self.parameters
+ cdef int time_limit = parameters.tm_lim
+ cdef glp_iocp integer_parameters = self.integer_parameters
+ cdef glp_prob *glp = self.glp
+
+ if "quadratic_component" in solver_parameters:
+ q = solver_parameters.pop("quadratic_component")
+ if q is not None:
+ raise ValueError("quadratic component must be None for glpk")
+
+ for key, value in solver_parameters.items():
+ self.set_parameter(key, value)
+
+ # suspend the gil to allow multithreading
+ # multithreading must occur with DIFFERENT glp objects
+ # calling solve_problem on the same object from 2 different
+ # threads at the same time will probably cause problems
+ # because glpk itself is not thread safe
+
+ #with nogil: # we can use this if glpk ever gets thread-safe malloc
+ # Try to solve the problem with the existing basis, but with
+ # a time limit in case it gets stuck.
+ if parameters.tm_lim > 500:
+ parameters.tm_lim = 500
+ if glp_simplex(glp, ¶meters) != 0:
+ glp_adv_basis(glp, 0)
+ parameters.tm_lim = time_limit
+ check_error(glp_simplex(glp, ¶meters))
+ parameters.tm_lim = time_limit
+ if self.exact:
+ check_error(glp_exact(glp, ¶meters))
+ if self.is_mip():
+ self.integer_parameters.tm_lim = self.parameters.tm_lim
+ self.integer_parameters.msg_lev = self.parameters.msg_lev
+ #self.integer_parameters.tol_bnd = self.parameters.tol_bnd
+ #self.integer_parameters.tol_piv = self.parameters.tol_piv
+ #with nogil:
+ check_error(glp_intopt(glp, &integer_parameters))
+ return self.get_status()
+
+ @classmethod
+ def solve(cls, cobra_model, **kwargs):
+ problem = cls.create_problem(cobra_model)
+ problem.solve_problem(**kwargs)
+ solution = problem.format_solution(cobra_model)
+ return solution
+
+ def get_status(self):
+ cdef int result = glp_mip_status(self.glp) if self.is_mip() \
+ else glp_get_status(self.glp)
+ if result == GLP_OPT:
+ return "optimal"
+ if result == GLP_FEAS:
+ return glp_get_status(self.glp)
+ if result == GLP_UNDEF:
+ return "undefined"
+ if result == GLP_UNBND:
+ return "unbounded"
+ if result == GLP_NOFEAS:
+ return "infeasible"
+ return "failed"
+
+ cpdef set_objective_sense(self, objective_sense):
+ objective_sense = objective_sense.lower()
+ if objective_sense == "maximize":
+ glp_set_obj_dir(self.glp, GLP_MAX)
+ elif objective_sense == "minimize":
+ glp_set_obj_dir(self.glp, GLP_MIN)
+ else:
+ raise ValueError("%s is not a valid objective sense" % objective_sense)
+
+ cpdef set_parameter(self, parameter_name, value):
+ """set a solver parameter"""
+ if parameter_name == "objective_sense":
+ self.set_objective_sense(value)
+ elif parameter_name == "time_limit":
+ self.parameters.tm_lim = int(1000 * value)
+ elif parameter_name == "tolerance_feasibility":
+ self.parameters.tol_bnd = float(value)
+ self.parameters.tol_dj = float(value)
+ elif parameter_name == "tolerance_markowitz":
+ self.parameters.tol_piv = float(value)
+ elif parameter_name == "tolerance_integer":
+ self.integer_parameters.tol_int = float(value)
+ elif parameter_name == "mip_gap" or parameter_name == "MIP_gap":
+ self.integer_parameters.mip_gap = float(value)
+ elif parameter_name == "verbose":
+ if not value: # suppress all output
+ self.parameters.msg_lev = GLP_MSG_OFF
+ glp_term_hook(NULL, NULL)
+ return
+ glp_term_hook(hook, NULL)
+ if value == "err":
+ self.parameters.msg_lev = GLP_MSG_ERR
+ elif value is True or value == "all":
+ self.parameters.msg_lev = GLP_MSG_ALL
+ elif value == "normal":
+ self.parameters.msg_lev = GLP_MSG_ON
+ elif parameter_name == "iteration_limit":
+ self.parameters.it_lim = value
+ elif parameter_name == "lp_method":
+ self.parameters.meth = METHODS[value]
+ elif parameter_name == "exact":
+ self.exact = value
+ elif parameter_name == "threads":
+ _warn("multiple threads not supported")
+ elif parameter_name == "MIP_gap_abs":
+ _warn("setting aboslute mip gap not supported")
+ else:
+ raise ValueError("unknown parameter " + str(parameter_name))
+
+ cpdef get_objective_value(self):
+ if self.is_mip():
+ return glp_mip_obj_val(self.glp)
+ return glp_get_obj_val(self.glp)
+
+ cpdef change_variable_objective(self, int index, double value):
+ assert index >= 0
+ glp_set_obj_coef(self.glp, index + 1, value)
+
+ cpdef is_mip(self):
+ return glp_get_num_int(self.glp) > 0
+
+ def format_solution(self, cobra_model):
+ cdef int i, m, n
+ cdef glp_prob *glp = self.glp
+ Solution = cobra_model.solution.__class__
+ status = self.get_status()
+ if status != "optimal": # todo handle other possible
+ return Solution(None, status=status)
+ solution = Solution(self.get_objective_value(), status=status)
+ m = glp_get_num_rows(glp)
+ n = glp_get_num_cols(glp)
+ x = [0] * n
+ if self.is_mip():
+ for i in range(1, n + 1):
+ x[i - 1] = glp_mip_col_val(glp, i)
+ solution.x_dict = {rxn.id: x[i] for i, rxn
+ in enumerate(cobra_model.reactions)}
+ solution.x = x
+ else:
+ for i in range(1, n + 1):
+ x[i - 1] = glp_get_col_prim(glp, i)
+ solution.x_dict = {rxn.id: x[i] for i, rxn
+ in enumerate(cobra_model.reactions)}
+ solution.x = x
+ y = [0] * m
+ for i in range(1, m + 1):
+ y[i - 1] = glp_get_row_dual(glp, i)
+ solution.y_dict = {met.id: y[i] for i, met
+ in enumerate(cobra_model.metabolites)}
+ solution.y = y
+ return solution
+
+ # make serializable and copyable
+ def __getstate__(self):
+ cdef int result
+ cdef char *name
+ tempfile = _NamedTemporaryFile(mode="r", delete=False)
+ name = tempfile.name
+ tempfile.close()
+ result = glp_write_prob(self.glp, 0, name)
+ assert result == 0
+ with open(name, "r") as infile:
+ state = infile.read()
+ _unlink(name)
+ return state
+
+ def __reduce__(self):
+ return (GLP, (), self.__getstate__())
+
+ def __setstate__(self, state):
+ cdef int result
+ cdef char *name = NULL
+ with _NamedTemporaryFile(mode="w", delete=False) as tempfile:
+ name = tempfile.name
+ tempfile.write(state)
+ result = glp_read_prob(self.glp, 0, name)
+ assert result == 0
+ _unlink(name)
+
+ def __copy__(self):
+ other = GLP()
+ glp_copy_prob(other.glp, self.glp, GLP_ON)
+ other.parameters = self.parameters
+ other.integer_parameters = self.integer_parameters
+ other.exact = self.exact
+ return other
+
+ def write(self, filename):
+ """Write the problem to a file
+
+ The format will be determined by the file extension.
+ .lp: LP file
+ .mps: MPS file
+ """
+ if PY_MAJOR_VERSION == 2:
+ b_name = bytes(filename)
+ elif PY_MAJOR_VERSION == 3:
+ b_name = bytes(filename, "latin-1")
+ else:
+ raise RuntimeError("Unknown python version")
+ cdef char *c_name = <bytes> b_name
+ cdef int res
+ if b_name.endswith(".lp"):
+ res = glp_write_lp(self.glp, NULL, c_name)
+ elif b_name.endswith(".mps"):
+ res = glp_write_mps(self.glp, GLP_MPS_FILE, NULL, c_name)
+ else:
+ raise ValueError("Unknown file format for %s" % str(filename))
+ if res != 0:
+ raise IOError("failed to write LP to file %s" % str(filename))
+
+
+# wrappers for all the functions at the module level
+create_problem = GLP.create_problem
+def set_objective_sense(lp, objective_sense="maximize"):
+ return lp.set_objective_sense(lp, objective_sense=objective_sense)
+cpdef change_variable_bounds(lp, int index,
+ double lower_bound, double upper_bound):
+ return lp.change_variable_bounds(index, lower_bound, upper_bound)
+cpdef change_variable_objective(lp, int index, double value):
+ return lp.change_variable_objective(index, value)
+cpdef change_coefficient(lp, int met_index, int rxn_index, double value):
+ return lp.change_coefficient(met_index, rxn_index, value)
+cpdef set_parameter(lp, parameter_name, value):
+ return lp.set_parameter(parameter_name, value)
+def solve_problem(lp, **kwargs):
+ return lp.solve_problem(**kwargs)
+cpdef get_status(lp):
+ return lp.get_status()
+cpdef get_objective_value(lp):
+ return lp.get_objective_value()
+cpdef format_solution(lp, cobra_model):
+ return lp.format_solution(cobra_model)
+solve = GLP.solve
diff --git a/cobra/solvers/cplex_solver.py b/cobra/solvers/cplex_solver.py
new file mode 100644
index 0000000..42f9480
--- /dev/null
+++ b/cobra/solvers/cplex_solver.py
@@ -0,0 +1,329 @@
+# Interface to ilog/cplex 12.4 python interface
+
+from copy import deepcopy
+from warnings import warn
+import sys
+
+from cplex import Cplex, SparsePair
+from cplex.exceptions import CplexError
+
+from ..core.Solution import Solution
+from ..external.six.moves import zip
+from ..external.six import string_types
+
+solver_name = 'cplex'
+_SUPPORTS_MILP = True
+
+# solver specific parameters
+parameter_defaults = {'objective_sense': 'maximize',
+ 'tolerance_optimality': 1e-6,
+ 'tolerance_feasibility': 1e-6,
+ 'tolerance_integer': 1e-9,
+ 'lp_method': 1,
+ 'tolerance_barrier': 1e-8,
+ 'verbose': False}
+parameter_mappings = {'lp_method': 'lpmethod',
+ 'lp_parallel': 'threads',
+ 'threads': 'threads',
+ 'objective_sense': 'objective_sense',
+ 'time_limit': 'timelimit',
+ 'iteration_limit': 'simplex.limits.iterations',
+ 'tolerance_barrier': 'barrier.convergetol',
+ 'tolerance_feasibility': 'simplex.tolerances.feasibility',
+ 'tolerance_markowitz': 'simplex.tolerances.markowitz',
+ 'tolerance_optimality': 'simplex.tolerances.optimality',
+ 'tolerance_integer': 'mip.tolerances.integrality',
+ 'MIP_gap_abs': 'mip.tolerances.absmipgap',
+ 'MIP_gap': 'mip.tolerances.mipgap'}
+variable_kind_dict = {'continuous': Cplex.variables.type.continuous,
+ 'integer': Cplex.variables.type.integer}
+status_dict = {'MIP_infeasible': 'infeasible',
+ 'integer optimal solution': 'optimal',
+ 'MIP_optimal': 'optimal',
+ 'MIP_optimal_tolerance': 'optimal',
+ 'MIP_unbounded': 'unbounded',
+ 'infeasible': 'infeasible',
+ 'optimal': 'optimal',
+ 'optimal_tolerance': 'optimal',
+ 'unbounded': 'unbounded',
+ 'integer optimal, tolerance': 'optimal',
+ 'time limit exceeded': 'time_limit'}
+
+
+def get_status(lp):
+ status = lp.solution.get_status_string().lower()
+ return status_dict[status] if status in status_dict else 'failed'
+
+
+def get_objective_value(lp):
+ return lp.solution.get_objective_value()
+
+
+def format_solution(lp, cobra_model, **kwargs):
+ status = get_status(lp)
+ if status in ('optimal', 'time_limit'):
+ objective_value = lp.solution.get_objective_value()
+ x_dict = dict(zip(lp.variables.get_names(),
+ lp.solution.get_values()))
+ x = lp.solution.get_values()
+ # MIP's don't have duals
+ if lp.get_problem_type() in (Cplex.problem_type.MIQP,
+ Cplex.problem_type.MILP):
+
+ y = y_dict = None
+ else:
+ y_dict = dict(zip(lp.linear_constraints.get_names(),
+ lp.solution.get_dual_values()))
+ y = lp.solution.get_dual_values()
+ else:
+ x = y = x_dict = y_dict = objective_value = None
+
+ return Solution(objective_value, x=x, x_dict=x_dict, status=status,
+ y=y, y_dict=y_dict)
+
+
+def set_parameter(lp, parameter_name, parameter_value):
+ if parameter_name == 'objective_sense':
+ parameter_value = getattr(lp.objective.sense, parameter_value)
+ lp.objective.set_sense(parameter_value)
+ return
+ elif parameter_name == 'the_problem':
+ warn('option the_problem removed')
+ return
+ elif parameter_name == 'verbose':
+ if parameter_value:
+ lp.set_log_stream(sys.stdout)
+ lp.set_results_stream(sys.stdout)
+ lp.set_warning_stream(sys.stderr)
+ # If the value passed in is True, it shold be 1. MIP display can
+ # be as high as 5, but the others only go up to 2.
+ value = int(parameter_value)
+ set_parameter(lp, 'mip.display', value)
+ set_parameter(lp, 'simplex.display', min(value, 2))
+ set_parameter(lp, 'barrier.display', min(value, 2))
+ else:
+ lp.set_log_stream(None)
+ lp.set_results_stream(None)
+ lp.set_warning_stream(None)
+ set_parameter(lp, 'mip.display', 0)
+ set_parameter(lp, 'simplex.display', 0)
+ set_parameter(lp, 'barrier.display', 0)
+ return
+ try:
+ cplex_name = parameter_mappings.get(parameter_name, parameter_name)
+ cplex_value = parameter_value
+ # This will iteratively get parameters. For example
+ # "simplex.tolerances.feasibility" will evaluate to
+ # lp.parameters.simplex.tolerances.feasibility.
+ param = lp.parameters
+ for i in cplex_name.split("."):
+ param = getattr(param, i)
+ # For example, this next part will allow setting the parameter
+ # lpmethod to "auto", "primal", "dual" or any other string in
+ # parameters.lp.method.values
+ if isinstance(cplex_value, string_types) and \
+ hasattr(param.values, cplex_value):
+ cplex_value = getattr(param.values, cplex_value)
+ param.set(cplex_value)
+ except (CplexError, AttributeError) as e:
+ raise ValueError("Failed to set %s to %s: %s" %
+ (parameter_name, str(parameter_value), repr(e)))
+
+
+def create_problem(cobra_model, quadratic_component=None, **kwargs):
+ """Solver-specific method for constructing a solver problem from
+ a cobra.Model. This can be tuned for performance using kwargs
+
+
+ """
+ # Process parameter defaults
+ the_parameters = parameter_defaults
+ if kwargs:
+ the_parameters = parameter_defaults.copy()
+ the_parameters.update(kwargs)
+ if 'relax_b' in the_parameters:
+ relax_b = the_parameters.pop("relax_b")
+ warn('need to reimplement relax_b')
+ relax_b = False
+ else:
+ relax_b = False
+
+ # Begin problem creation
+ lp = Cplex()
+ for k, v in the_parameters.iteritems():
+ set_parameter(lp, k, v)
+ objective_coefficients = [float(x.objective_coefficient)
+ for x in cobra_model.reactions]
+ lower_bounds = [float(x.lower_bound) for x in cobra_model.reactions]
+ upper_bounds = [float(x.upper_bound) for x in cobra_model.reactions]
+ variable_names = cobra_model.reactions.list_attr("id")
+ variable_kinds = [variable_kind_dict[x.variable_kind] for x
+ in cobra_model.reactions]
+ # Cplex decides that the problem is a MIP if variable_kinds are supplied
+ # even if there aren't any integers.
+ if variable_kind_dict['integer'] in variable_kinds:
+ lp.variables.add(obj=objective_coefficients,
+ lb=lower_bounds,
+ ub=upper_bounds,
+ names=variable_names,
+ types=variable_kinds)
+ else:
+ lp.variables.add(obj=objective_coefficients,
+ lb=lower_bounds,
+ ub=upper_bounds,
+ names=variable_names)
+
+ ## if relax_b:
+ ## range_values = zeros(len(cobra_model.metabolites))
+ ## b_values = array([x._bound for x in cobra_model.metabolties])
+ ## for the_nonzero in list(b_values.nonzero()[0]):
+ ## range_values[the_nonzero] = -relax_b
+
+ constraint_sense = []
+ constraint_names = []
+ constraint_limits = []
+ [(constraint_sense.append(x._constraint_sense),
+ constraint_names.append(x.id),
+ constraint_limits.append(float(x._bound)))
+ for x in cobra_model.metabolites]
+
+ the_linear_expressions = []
+ #NOTE: This won't work with metabolites that aren't in any reaction
+ for the_metabolite in cobra_model.metabolites:
+ variable_list = []
+ coefficient_list = []
+ for the_reaction in the_metabolite._reaction:
+ variable_list.append(the_reaction.id)
+ coefficient_list.append(float(the_reaction._metabolites[the_metabolite]))
+ the_linear_expressions.append(SparsePair(ind=variable_list,
+ val=coefficient_list))
+ # Set objective to quadratic program
+ if quadratic_component is not None:
+ set_quadratic_objective(lp, quadratic_component)
+
+ if relax_b:
+ lp.linear_constraints.add(lin_expr=the_linear_expressions,
+ rhs=constraint_limits,
+ range_values=list(range_values),
+ senses=constraint_sense,
+ names=constraint_names)
+
+ else:
+ lp.linear_constraints.add(lin_expr=the_linear_expressions,
+ rhs=constraint_limits,
+ senses=constraint_sense,
+ names=constraint_names)
+
+ #Set the problem type as cplex doesn't appear to do this correctly
+ problem_type = Cplex.problem_type.LP
+ if Cplex.variables.type.integer in variable_kinds:
+ if quadratic_component is not None:
+ problem_type = Cplex.problem_type.MIQP
+ else:
+ problem_type = Cplex.problem_type.MILP
+ elif quadratic_component is not None:
+ problem_type = Cplex.problem_type.QP
+ lp.set_problem_type(problem_type)
+ return(lp)
+
+
+def set_quadratic_objective(lp, quadratic_objective):
+ if not hasattr(quadratic_objective, 'todok'):
+ raise Exception('quadratic component must have method todok')
+
+ # Reset the quadratic coefficient if it exists
+ if lp.objective.get_num_quadratic_nonzeros() > 0:
+ lp.objective.set_quadratic((0.,) * lp.variables.get_num())
+
+ quadratic_component_scaled = quadratic_objective.todok()
+
+ lp.parameters.emphasis.numerical.set(1)
+ for k, v in quadratic_component_scaled.items():
+ lp.objective.set_quadratic_coefficients(int(k[0]), int(k[1]), v)
+
+def change_variable_bounds(lp, index, lower_bound, upper_bound):
+ lp.variables.set_lower_bounds(index, lower_bound)
+ lp.variables.set_upper_bounds(index, upper_bound)
+
+def change_variable_objective(lp, index, objective):
+ lp.objective.set_linear(index, objective)
+
+
+def change_coefficient(lp, met_index, rxn_index, value):
+ lp.linear_constraints.set_coefficients(met_index, rxn_index, value)
+
+def update_problem(lp, cobra_model, new_objective=None, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ lp: A cplex problem object
+
+ cobra_model: the cobra.Model corresponding to 'lp'
+
+ """
+ #When reusing the basis only assume that the objective coefficients or bounds can change
+ #BUG with changing / unchanging the basis
+
+ try:
+ update_problem_reaction_bounds = kwargs['update_problem_reaction_bounds']
+ except:
+ update_problem_reaction_bounds = True
+ try:
+ quadratic_component = kwargs['quadratic_component']
+ if quadratic_component is not None:
+ warn("update_problem does not yet take quadratic_component as a parameter")
+ except:
+ quadratic_component = None
+
+ if new_objective is not None:
+ lp.objective.set_linear([(x.id, float(x.objective_coefficient))
+ for x in cobra_model.reactions])
+ if update_problem_reaction_bounds:
+ lp.variables.set_upper_bounds([(x.id, float(x.upper_bound))
+ for x in cobra_model.reactions])
+ lp.variables.set_lower_bounds([(x.id, float(x.lower_bound))
+ for x in cobra_model.reactions])
+
+
+def solve_problem(lp, **kwargs):
+ # Update parameter settings if provided
+ for k, v in kwargs.iteritems():
+ set_parameter(lp, k, v)
+ lp.solve()
+ # If the solver takes more than 0.1 s with a hot start it is likely stuck
+ return get_status(lp)
+
+
+def solve(cobra_model, **kwargs):
+ """
+
+ """
+ #Start out with default parameters and then modify if
+ #new onese are provided
+ for i in ["new_objective", "update_problem", "the_problem"]:
+ if i in kwargs:
+ raise Exception("Option %s removed" % i)
+ if 'error_reporting' in kwargs:
+ kwargs.pop('error_erporting')
+ warn("error_reporting deprecated")
+
+ # Create problem will get parameter defaults
+ lp = create_problem(cobra_model, **kwargs)
+
+ ###Try to solve the problem using other methods if the first method doesn't work
+ try:
+ lp_method = the_parameters['lp_method']
+ except:
+ lp_method = 1
+ the_methods = [1, 2, 3, 4, 5, 6]
+ if lp_method in the_methods:
+ the_methods.remove(lp_method)
+ #Start with the user specified method
+ the_methods.insert(0, lp_method)
+ for the_method in the_methods:
+ try:
+ status = solve_problem(lp, lp_method=the_method)
+ except:
+ status = 'failed'
+ if status == 'optimal':
+ break
+ return format_solution(lp, cobra_model)
diff --git a/cobra/solvers/cplex_solver_java.py b/cobra/solvers/cplex_solver_java.py
new file mode 100644
index 0000000..a5ad3f2
--- /dev/null
+++ b/cobra/solvers/cplex_solver_java.py
@@ -0,0 +1,321 @@
+#cobra.solvers.cplex_solver
+#Interface to ilog/cplex 12.4 python / jython interfaces
+#QPs are not yet supported under jython
+from os import name as __name
+from copy import deepcopy
+from warnings import warn
+###solver specific parameters
+from .parameters import status_dict, variable_kind_dict, \
+ sense_dict, parameter_mappings, parameter_defaults, \
+ objective_senses, default_objective_sense
+
+from ..core.Solution import Solution
+from time import time
+solver_name = 'cplex'
+parameter_defaults = parameter_defaults[solver_name]
+sense_dict = eval(sense_dict[solver_name])
+
+from ilog.cplex import IloCplex
+from ilog.cplex.IloCplex import DoubleParam, IntParam, StringParam
+from ilog.concert import IloNumVarType, IloObjectiveSense
+#__solver_class = IloCplex
+status_dict = eval(status_dict[solver_name])
+class Problem(IloCplex):
+ def __init__(self):
+ IloCplex.__init__(self)
+ self._lp_matrix = self.addLPMatrix()
+ self.objective_value = None
+ self._objective_sense = 'maximize'
+ def add_linear_expression(self, linear_expression, metabolite):
+ b = metabolite._bound
+ c = metabolite._constraint_sense
+ the_id = metabolite.id
+ if c == 'E':
+ p = self.addEq(linear_expression, b, the_id)
+ elif c == 'L':
+ p = self.addLe(linear_expression, b, the_id)
+ elif c == 'G':
+ p = self.addGe(linear_expression, b, the_id)
+ else:
+ raise Exception("Constraint sense '%s' for metabolite %s is not valid"%(c,
+ the_id))
+ return(p)
+
+__solver_class = Problem
+parameter_mappings = parameter_mappings['%s_%s'%(solver_name,
+ __name)]
+variable_kind_dict = eval(variable_kind_dict['%s_%s'%(solver_name,
+ __name)])
+objective_senses = objective_senses['%s_%s'%(solver_name,
+ __name)]
+## from jarray import array as j_array
+## def array(x, variable_type='d'):
+## return j_array(x, variable_type)
+
+
+def get_status(lp):
+ status = repr(lp.status).lower()
+ if status in status_dict:
+ status = status_dict[status]
+ else:
+ status = 'failed'
+ return status
+
+def set_parameter(lp, parameter_name, parameter_value):
+ if parameter_name == 'objective_sense':
+ objective = lp.getObjective()
+ if objective is not None:
+ objective.setSense(eval(objective_senses[parameter_value]))
+
+ else:
+ if hasattr(DoubleParam, parameter_name):
+ parameter_type = 'DoubleParam'
+ elif hasattr(IntParam, parameter_name):
+ parameter_type = 'IntParam'
+ elif hasattr(StringParam, parameter_name):
+ parameter_type = 'StringParam'
+ else:
+ raise Exception("%s is not a DoubleParam, IntParam, or StringParam"%parameter_name)
+ lp.setParam(eval('%s.%s'%(parameter_type, parameter_name)),
+ parameter_value)
+
+def get_objective_value(lp):
+ return lp.getObjValue()
+
+def format_solution(lp, cobra_model, **kwargs):
+ """
+ TODO
+ """
+ status = get_status(lp)
+ try:
+ x = lp.getValues(lp.variables)
+ x_dict = dict(zip(cobra_model.reactions, x))
+ objective_value = lp.getObjValue()
+ except:
+ x = x_dict = objective_value = None
+ #print status
+
+ try:
+ y = lp.getDuals(lp.variables)
+ y_dict = dict(zip(cobra_model.metabolites, y))
+ except:
+ y = y_dict = None
+ return(Solution(objective_value, x=x, x_dict=x_dict, y=y,
+ y_dict=y_dict, status=status))
+
+def create_problem(cobra_model, **kwargs):
+ """Solver-specific method for constructing a solver problem from
+ a cobra.Model. This can be tuned for performance using kwargs
+
+ TODO: This will need to be specific for python / jython
+ """
+ the_parameters = parameter_defaults
+ if kwargs:
+ the_parameters = deepcopy(parameter_defaults)
+ the_parameters.update(kwargs)
+
+ lp = Problem()
+
+ if 'log_file' not in the_parameters:
+ lp.setWarning(None)
+ lp.setOut(None)
+ [set_parameter(lp, parameter_mappings[k], v)
+ for k, v in the_parameters.iteritems() if k in parameter_mappings]
+ quadratic_component = the_parameters['quadratic_component']
+ new_objective = the_parameters['new_objective']
+ error_reporting = the_parameters['error_reporting']
+ lp._objective_sense = the_parameters['objective_sense']
+ if 'relax_b' in the_parameters:
+ warn('need to reimplement relax_b')
+ relax_b = False
+ else:
+ relax_b = False
+
+ #Using the new objects
+ #NOTE: This might be slow
+ objective_coefficients = []
+ lower_bounds = []
+ upper_bounds = []
+ variable_names = []
+ variable_kinds = []
+ [(objective_coefficients.append(x.objective_coefficient),
+ lower_bounds.append(x.lower_bound),
+ upper_bounds.append(x.upper_bound),
+ variable_names.append(x.id),
+ variable_kinds.append(variable_kind_dict[x.variable_kind]))
+ for x in cobra_model.reactions]
+
+ #Only add the variable types if one or more variables is an integer, just
+ #in case the java interface has the same bug as the python interface where
+ #the problem type switches to integer if variable types are supplied even
+ #if all are continuous
+ if variable_kind_dict['integer'] in variable_kinds:
+ lp.variables = lp.numVarArray(len(cobra_model.reactions), lower_bounds,
+ upper_bounds, variable_kinds, variable_names)
+ else:
+ lp.variables = lp.numVarArray(len(cobra_model.reactions), lower_bounds, upper_bounds,
+ variable_names)
+
+ lp.variable_dict = dict(zip(cobra_model.reactions, lp.variables))
+ if lp._objective_sense == 'maximize':
+ __lp_add_objective = lp.addMaximize
+ else:
+ __lp_add_objective = lp.addMinimize
+
+ __lp_add_objective(lp.scalProd(lp.variables, objective_coefficients))
+
+
+
+ lp.constraints = []
+ lp.constraint_dict = {}
+ for the_metabolite in cobra_model.metabolites:
+ linear_expression = lp.sum([lp.prod(k._metabolites[the_metabolite],
+ lp.variable_dict[k])
+ for k in the_metabolite._reaction])
+ expression_pointer = lp.add_linear_expression(linear_expression, the_metabolite)
+ lp.constraints.append(expression_pointer)
+ lp.constraint_dict[the_metabolite] = expression_pointer
+
+ if quadratic_component is not None:
+ raise Exception("cplex through java isn't configured for QPs yet")
+ if not hasattr(quadratic_component, 'todok'):
+ raise Exception('quadratic component must have method todok')
+ quadratic_component_scaled = quadratic_component.todok()
+
+ lp.parameters.emphasis.numerical.set(1)
+ for k, v in quadratic_component_scaled.items():
+ lp.objective.set_quadratic_coefficients(int(k[0]), int(k[1]), v)
+
+ ## #Set the problem type as cplex doesn't appear to do this correctly
+ ## problem_type = Cplex.problem_type.LP
+ ## if Cplex.variables.type.integer in variable_kinds:
+ ## if quadratic_component is not None:
+ ## problem_type = Cplex.problem_type.MIQP
+ ## else:
+ ## problem_type = Cplex.problem_type.MILP
+ ## elif quadratic_component is not None:
+ ## problem_type = Cplex.problem_type.QP
+ ## lp.set_problem_type(problem_type)
+ return(lp)
+
+
+def update_problem(lp, cobra_model, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ lp: A gurobi problem object
+
+ cobra_model: the cobra.Model corresponding to 'lp'
+
+ """
+ #When reusing the basis only assume that the objective coefficients or bounds can change
+ #BUG with changing / unchanging the basis
+ try:
+ new_objective = kwargs['new_objective']
+ except:
+ new_objective = None
+ try:
+ update_problem_reaction_bounds = kwargs['update_problem_reaction_bounds']
+ except:
+ update_problem_reaction_bounds = True
+ try:
+ quadratic_component = kwargs['quadratic_component']
+ if quadratic_component is not None:
+ warn("update_problem does not yet take quadratic_component as a parameter")
+ except:
+ quadratic_component = None
+
+ the_objective = lp.getObjective()
+ for the_variable, the_reaction in zip(lp.variables, cobra_model.reactions):
+ the_variable.setUB(float(the_reaction.upper_bound))
+ the_variable.setLB(float(the_reaction.lower_bound))
+ the_objective.setLinearCoef(the_variable, the_reaction.objective_coefficient)
+
+
+
+###
+def solve_problem(lp, **kwargs):
+ """A performance tunable method for solving a problem
+
+ """
+ #Update parameter settings if provided
+ if kwargs:
+ [set_parameter(lp, parameter_mappings[k], v)
+ for k, v in kwargs.iteritems() if k in parameter_mappings]
+ try:
+ the_problem = kwargs['the_problem']
+ except:
+ the_problem = False
+ if isinstance(the_problem, __solver_class):
+ try:
+ the_basis = the_problem.solution.basis.get_basis()
+ lp.start.set_basis(the_basis[0],the_basis[1])
+ lp.parameters.preprocessing.presolve.set(0)
+ except:
+ warn("cplex_java isn't yet configured to reuse the basis")
+
+ lp.solve()
+ #If the solver takes more than 0.1 s with a hot start it is likely stuck
+ status = get_status(lp)
+ return status
+
+
+def solve(cobra_model, **kwargs):
+ """
+
+ """
+ #Start out with default parameters and then modify if
+ #new onese are provided
+ the_parameters = deepcopy(parameter_defaults)
+ if kwargs:
+ the_parameters.update(kwargs)
+ #Update objectives if they are new.
+ if 'new_objective' in the_parameters and \
+ the_parameters['new_objective'] not in ['update problem', None]:
+ from ..flux_analysis.objective import update_objective
+ update_objective(cobra_model, the_parameters['new_objective'])
+
+ if 'the_problem' in the_parameters:
+ the_problem = the_parameters['the_problem']
+ else:
+ the_problem = None
+ if 'error_reporting' in the_parameters:
+ error_reporting = the_parameters['error_reporting']
+ else:
+ error_reporting = False
+ if isinstance(the_problem, __solver_class):
+ #Update the problem with the current cobra_model
+ lp = the_problem
+ update_problem(lp, cobra_model, **the_parameters)
+ else:
+ #Create a new problem
+ lp = create_problem(cobra_model, **the_parameters)
+ #Deprecated way for returning a solver problem created from a cobra_model
+ #without performing optimization
+ if the_problem == 'setup':
+ return lp
+
+ ###Try to solve the problem using other methods if the first method doesn't work
+ try:
+ lp_method = the_parameters['lp_method']
+ except:
+ lp_method = 1
+ the_methods = [1, 2, 3, 4, 5, 6]
+ if lp_method in the_methods:
+ the_methods.remove(lp_method)
+ #Start with the user specified method
+ the_methods.insert(0, lp_method)
+ for the_method in the_methods:
+ the_parameters['lp_method'] = the_method
+ try:
+ status = solve_problem(lp, **the_parameters)
+ except:
+ status = 'failed'
+ if status == 'optimal':
+ break
+
+ the_solution = format_solution(lp, cobra_model)
+ if status != 'optimal' and error_reporting:
+ print '%s failed: %s'%(solver_name, status)
+ cobra_model.solution = the_solution
+ solution = {'the_problem': lp, 'the_solution': the_solution}
+ return solution
diff --git a/cobra/solvers/esolver.py b/cobra/solvers/esolver.py
new file mode 100644
index 0000000..3ed4232
--- /dev/null
+++ b/cobra/solvers/esolver.py
@@ -0,0 +1,155 @@
+from subprocess import check_output, check_call, CalledProcessError
+from os import unlink, devnull
+from os.path import isfile
+from tempfile import NamedTemporaryFile
+from fractions import Fraction
+from ..external.six.moves import zip
+
+from . import cglpk
+from .wrappers import *
+
+# detect paths to system calls for esolver and gzip
+with open(devnull, "w") as DEVNULL:
+ try:
+ ESOLVER_COMMAND = check_output(["which", "esolver"],
+ stderr=DEVNULL).strip()
+ __esolver_version__ = check_output(["esolver", "-v"], stderr=DEVNULL)
+ except CalledProcessError:
+ raise RuntimeError("esolver command not found")
+ try:
+ GZIP_COMMAND = check_output(["which", "gzip"], stderr=DEVNULL).strip()
+ except CalledProcessError:
+ raise RuntimeError("gzip command not found")
+del DEVNULL
+
+solver_name = "esolver"
+
+
+class Esolver(cglpk.GLP):
+ """contain an LP which will be solved through the QSopt_ex
+
+ The LP is stored using a GLPK object, and written out to an
+ LP file which is then solved by the esolver command."""
+
+ def __init__(self, cobra_model=None):
+ cglpk.GLP.__init__(self, cobra_model)
+ self.solution_filepath = None
+ self.basis_filepath = None
+ self.rational_solution = False
+ self.verbose = False
+ self.clean_up = True # clean up files
+
+ def _clean(self, filename):
+ """remove old files"""
+ if self.clean_up and filename is not None and isfile(filename):
+ unlink(filename)
+
+ def set_parameter(self, parameter_name, value):
+ if parameter_name == "GLP":
+ raise Exception("can not be set this way")
+ if parameter_name == "objective_sense":
+ self.set_objective_sense(value)
+ if not hasattr(self, parameter_name):
+ raise ValueError("Unkonwn parameter '%s'" % parameter_name)
+ setattr(self, parameter_name, value)
+
+ def solve_problem(self, **solver_parameters):
+ if "objective_sense" in solver_parameters:
+ self.set_objective_sense(solver_parameters.pop("objective_sense"))
+ for key, value in solver_parameters.items():
+ self.set_parameter(key, value)
+ # remove the old solution file
+ self._clean(self.solution_filepath)
+ with NamedTemporaryFile(suffix=".lp", delete=False) as f:
+ lp_filepath = f.name
+ self.write(lp_filepath)
+ existing_basis = self.basis_filepath
+ with NamedTemporaryFile(suffix=".bas", delete=False) as f:
+ self.basis_filepath = f.name
+ with NamedTemporaryFile(suffix=".sol") as f:
+ self.solution_filepath = f.name
+ command = [ESOLVER_COMMAND, "-b", self.basis_filepath,
+ "-O", self.solution_filepath[:-4]]
+ if existing_basis is not None and isfile(existing_basis):
+ command.extend(["-B", existing_basis])
+ command.extend(["-L", lp_filepath])
+ command_kwargs = {}
+ if self.verbose:
+ print(" ".join(command))
+ DEVNULL = None
+ else:
+ DEVNULL = open(devnull, 'wb')
+ command_kwargs["stdout"] = DEVNULL
+ command_kwargs["stderr"] = DEVNULL
+ try:
+ check_call(command, **command_kwargs)
+ failed = False
+ except CalledProcessError as e:
+ failed = True
+ if failed:
+ self.basis_filepath = existing_basis
+ existing_basis = None
+ # Sometimes on failure a solution isn't written out
+ if not isfile(self.solution_filepath):
+ with open(self.solution_filepath, "w") as outfile:
+ outfile.write("=infeasible\n")
+ elif isfile(self.solution_filepath + ".gz"):
+ # the solution may be written out compressed
+ check_call([GZIP_COMMAND, "-d", self.solution_filepath + ".gz"])
+ if DEVNULL is not None:
+ DEVNULL.close()
+ self._clean(lp_filepath)
+ self._clean(existing_basis) # replaced with the new basis
+
+ def get_status(self):
+ with open(self.solution_filepath) as infile:
+ return infile.readline().split("=")[1].strip().lower()
+
+ def _format(self, value):
+ """convert a string value into either a fraction or float"""
+ value = Fraction(value)
+ return value if self.rational_solution else float(value)
+
+ def get_objective_value(self):
+ with open(self.solution_filepath) as infile:
+ status = infile.readline().split("=")[1].strip().lower()
+ if status != "optimal":
+ raise RuntimeError("status not optimal")
+ infile.readline()
+ return self._format(infile.readline().split("=")[1].strip())
+
+ def format_solution(self, cobra_model):
+ m = cobra_model
+ solution = m.solution.__class__(None)
+ with open(self.solution_filepath) as infile:
+ solution.status = infile.readline().split("=")[1].strip().lower()
+ if solution.status != "optimal":
+ return solution
+ infile.readline()
+ solution.f = self._format(Fraction(infile.readline()
+ .split("=")[1].strip()))
+ infile.readline()
+ value_dict = {}
+ for line in infile:
+ if line.endswith(":\n"):
+ break
+ varname, value = line.split("=")
+ value_dict[varname.strip()] = self._format(value.strip())
+ dual_dict = {}
+ for line in infile:
+ if line.endswith(":\n"):
+ break
+ varname, value = line.split("=")
+ dual_dict[varname.strip()] = self._format(value.strip())
+ solution.x = [value_dict.get("x_%d" % (i + 1), 0)
+ for i in range(len(m.reactions))]
+ solution.x_dict = {r.id: v for r, v in zip(m.reactions, solution.x)}
+ solution.y = [dual_dict.get("r_%d" % (i + 1), 0)
+ for i in range(len(m.metabolites))]
+ solution.y_dict = {m.id: v for m, v in zip(m.metabolites, solution.y)}
+ return solution
+
+
+# wrappers for the classmethods at the module level
+create_problem = Esolver.create_problem
+solve = Esolver.solve
diff --git a/cobra/solvers/glpk.pxd b/cobra/solvers/glpk.pxd
new file mode 100644
index 0000000..e721117
--- /dev/null
+++ b/cobra/solvers/glpk.pxd
@@ -0,0 +1,207 @@
+#inspired by sage/src/sage/numerical/backends/glpk_backend.pxd
+
+cdef extern from "glpk.h":
+ ctypedef struct glp_prob "glp_prob":
+ pass
+ ctypedef struct glp_iocp "glp_iocp":
+ int msg_lev
+ int br_tech
+ int bt_tech
+ int pp_tech
+ int fp_heur
+ int gmi_cuts
+ int mir_cuts
+ int cov_cuts
+ int clq_cuts
+ double tol_int
+ double tol_obj
+ double mip_gap
+ int tm_lim
+ int out_frq
+ int out_dly
+ int presolve
+ int binarize
+ ctypedef struct glp_smcp "glp_smcp":
+ int msg_lev
+ int meth
+ int pricing
+ int r_test
+ double tol_bnd
+ double tol_dj
+ double tol_piv
+ double obj_ll
+ double obj_ul
+ int it_lim
+ int tm_lim
+ int out_frq
+ int out_dly
+ int presolve
+ glp_iocp * new_glp_iocp "new glp_iocp" ()
+ void glp_init_iocp(glp_iocp *)
+ void glp_init_smcp(glp_smcp *)
+ glp_prob * glp_create_prob()
+ void glp_set_prob_name(glp_prob *, char *)
+ void glp_set_obj_dir(glp_prob *, int)
+ void glp_add_rows(glp_prob *, int)
+ void glp_add_cols(glp_prob *, int)
+ void glp_del_rows(glp_prob *, int, int *)
+ void glp_set_row_name(glp_prob *, int, char *)
+ void glp_set_col_name(glp_prob *, int, char *)
+ void glp_set_row_bnds(glp_prob *, int, int, double, double)
+ void glp_set_col_bnds(glp_prob *, int, int, double, double)
+ void glp_set_obj_coef(glp_prob *, int, double)
+ void glp_load_matrix(glp_prob *, int, int *, int *, double *)
+ int glp_simplex(glp_prob *, glp_smcp *)
+ int glp_exact(glp_prob *, glp_smcp *) # requires gmp
+ int glp_intopt(glp_prob *, glp_iocp *)
+ void glp_std_basis(glp_prob *)
+ void glp_delete_prob(glp_prob *)
+ double glp_get_col_prim(glp_prob *, int)
+ double glp_get_obj_val(glp_prob *)
+ double glp_get_col_dual(glp_prob *, int)
+ double glp_get_row_dual(glp_prob *, int)
+ int glp_print_ranges(glp_prob *lp, int,int, int, char *fname)
+ int glp_get_num_rows(glp_prob *)
+ int glp_get_num_cols(glp_prob *)
+ int glp_get_num_int(glp_prob *)
+ double glp_mip_col_val(glp_prob *, int)
+ double glp_mip_obj_val(glp_prob *)
+ void glp_set_col_kind(glp_prob *, int, int)
+ int glp_write_mps(glp_prob *lp, int fmt, void *parm, char *fname)
+ int glp_write_lp(glp_prob *lp, void *parm, char *fname)
+ int glp_write_prob(glp_prob *P, int flags, char *fname)
+ int glp_read_prob(glp_prob *P, int flags, char *fname)
+
+ void glp_set_prob_name(glp_prob *lp, char *name)
+ void glp_set_obj_name(glp_prob *lp, char *name)
+ void glp_set_row_name(glp_prob *lp, int i, char *name)
+ void glp_set_col_name(glp_prob *lp, int i, char *name)
+
+ double glp_get_row_ub(glp_prob *lp, int i)
+ double glp_get_row_lb(glp_prob *lp, int i)
+
+ double glp_get_col_ub(glp_prob *lp, int i)
+ double glp_get_col_lb(glp_prob *lp, int i)
+ void glp_set_col_ub(glp_prob *lp, int i, double value)
+ void glp_set_col_lb(glp_prob *lp, int i, double value)
+
+
+ void glp_create_index(glp_prob *P)
+ int glp_find_row(glp_prob *P, const char *name)
+ int glp_find_col(glp_prob *P, const char *name)
+ void glp_delete_index(glp_prob *P)
+
+ double glp_get_col_lb(glp_prob *lp, int i)
+ double glp_get_col_ub(glp_prob *lp, int i)
+
+ int glp_get_prim_stat(glp_prob *lp)
+ int glp_get_status(glp_prob *lp)
+ int glp_mip_status(glp_prob *lp)
+ int glp_get_num_nz(glp_prob *lp)
+ int glp_set_mat_row(glp_prob *lp, int, int, int *, double * )
+ int glp_set_mat_col(glp_prob *lp, int, int, int *, double * )
+ int glp_get_mat_row(glp_prob *lp, int, int *, double * )
+ int glp_get_mat_col(glp_prob *lp, int, int *, double * )
+ double glp_get_row_ub(glp_prob *lp, int)
+ double glp_get_row_lb(glp_prob *lp, int)
+ int glp_get_col_kind(glp_prob *lp, int)
+ double glp_get_obj_coef(glp_prob *lp, int)
+ int glp_get_obj_dir(glp_prob *lp)
+ void glp_copy_prob(glp_prob *dst, glp_prob *src, int names)
+ const char *glp_version()
+
+ # output redirection
+ int glp_term_out(int flag)
+ void glp_term_hook(int (*func)(void *info, const char *s), void *info)
+
+ int glp_warm_up(glp_prob *P)
+ void glp_adv_basis(glp_prob *P, int flags)
+
+ # constants
+
+ # constants for smcp control
+
+ int GLP_MSG_OFF
+ int GLP_MSG_ERR
+ int GLP_MSG_ON
+ int GLP_MSG_ALL
+
+ int GLP_PRIMAL
+ int GLP_DUALP
+ int GLP_DUAL
+
+ int GLP_PT_STD
+ int GLP_PT_PSE
+
+ int GLP_RT_STD
+ int GLP_RT_HAR
+
+ double DBL_MAX
+
+ int INT_MAX
+
+ int GLP_ON
+ int GLP_OFF
+
+ # constants for iocp control, not already in simplex
+
+ int GLP_BR_FFV
+ int GLP_BR_LFV
+ int GLP_BR_MFV
+ int GLP_BR_DTH
+ int GLP_BR_PCH
+
+ int GLP_BT_DFS
+ int GLP_BT_BFS
+ int GLP_BT_BLB
+ int GLP_BT_BPH
+
+ int GLP_PP_NONE
+ int GLP_PP_ROOT
+ int GLP_PP_ALL
+
+ # error codes
+ int GLP_EBADB
+ int GLP_ESING
+ int GLP_ECOND
+ int GLP_EBOUND
+ int GLP_EFAIL
+ int GLP_EOBJLL
+ int GLP_EOBJUL
+ int GLP_EITLIM
+ int GLP_ETMLIM
+ int GLP_ENOPFS
+ int GLP_ENODFS
+ int GLP_EROOT
+ int GLP_ESTOP
+ int GLP_EMIPGAP
+ int GLP_ENOFEAS
+ int GLP_ENOCVG
+ int GLP_EINSTAB
+ int GLP_EDATA
+ int GLP_ERANGE
+
+
+ int GLP_UNDEF
+ int GLP_OPT
+ int GLP_FEAS
+ int GLP_NOFEAS
+ int GLP_INFEAS
+ int GLP_UNBND
+
+ # other constants
+
+ int GLP_MAX
+ int GLP_MIN
+ int GLP_UP
+ int GLP_FR
+ int GLP_DB
+ int GLP_FX
+ int GLP_LO
+ int GLP_CV
+ int GLP_IV
+ int GLP_BV
+ int GLP_MPS_DECK
+ int GLP_MPS_FILE
+
+ int GLP_MSG_DBG
diff --git a/cobra/solvers/glpk_solver.py b/cobra/solvers/glpk_solver.py
new file mode 100644
index 0000000..eabfd6e
--- /dev/null
+++ b/cobra/solvers/glpk_solver.py
@@ -0,0 +1,264 @@
+##cobra.solvers.glpk_solver
+#This script provides wrappers for pyglpk 0.3
+from warnings import warn
+from copy import deepcopy
+from itertools import izip
+
+from glpk import LPX
+
+from ..core.Solution import Solution
+
+solver_name = 'glpk'
+_SUPPORTS_MILP = True
+
+# solver specific parameters
+variable_kind_dict = {'continuous': float, 'integer': int}
+status_dict = {'opt': 'optimal', 'nofeas': 'infeasible', 'unbnd': 'unbounded'}
+parameter_defaults = {
+ 'tolerance_feasibility': 1e-6,
+ 'tolerance_integer': 1e-9,
+ 'lp_method': 1
+}
+
+METHOD_TYPES = {"auto": 2, "primal": 1, "dual": 3}
+
+def get_status(lp):
+ status = lp.status
+ if status in status_dict:
+ status = status_dict[status]
+ else:
+ status = 'failed'
+ return status
+
+def get_objective_value(lp):
+ return lp.obj.value
+
+def format_solution(lp, cobra_model, **kwargs):
+ status = get_status(lp)
+ if status == 'optimal':
+ sol = Solution(lp.obj.value, status=status)
+ sol.x = [float(c.primal) for c in lp.cols]
+ sol.x_dict = {c.name: c.primal for c in lp.cols}
+
+ # return the duals as well as the primals for LPs
+ if lp.kind == float:
+ sol.y = [float(c.dual) for c in lp.rows]
+ sol.y_dict = {c.name: c.dual for c in lp.rows}
+ return sol
+
+ return Solution(None, status=status)
+
+def set_parameter(lp, parameter_name, parameter_value):
+ """with pyglpk the parameters are set during the solve phase, with
+ the exception of objective sense.
+
+ """
+ if parameter_name == 'objective_sense':
+ if parameter_value.lower() == 'maximize':
+ lp.obj.maximize = True
+ elif parameter_value.lower() == 'minimize':
+ lp.obj.maximize = False
+ else:
+ raise ValueError("objective_sense should be "
+ "'maximize' or 'minimize'")
+ else:
+ # This will be made into an exception in the future
+ warn("pyglpk parameters (other than objective_sense) are set "
+ "during solve_problem")
+
+
+def create_problem(cobra_model, **kwargs):
+ """Solver-specific method for constructing a solver problem from
+ a cobra.Model. This can be tuned for performance using kwargs
+
+ """
+ metabolite_to_index = {r: i for i, r in enumerate(cobra_model.metabolites)}
+
+ lp = LPX() # Create empty problem instance
+ lp.name = 'cobra' # Assign symbolic name to problem
+ lp.rows.add(len(cobra_model.metabolites))
+ lp.cols.add(len(cobra_model.reactions))
+
+ for r, the_metabolite in izip(lp.rows, cobra_model.metabolites):
+ r.name = the_metabolite.id
+ b = float(the_metabolite._bound)
+ c = the_metabolite._constraint_sense
+ if c == 'E':
+ r.bounds = b, b # Set metabolite to steady state levels
+ elif c == 'L':
+ r.bounds = None, b
+ elif c == 'G':
+ r.bounds = b, None
+ else:
+ raise ValueError("invalid constraint sense")
+
+ objective_coefficients = []
+ linear_constraints = []
+ for c, the_reaction in izip(lp.cols, cobra_model.reactions):
+ c.name = the_reaction.id
+ c.kind = variable_kind_dict[the_reaction.variable_kind]
+ c.bounds = the_reaction.lower_bound, the_reaction.upper_bound
+ objective_coefficients.append(float(the_reaction.objective_coefficient))
+ for metabolite, coefficient in the_reaction._metabolites.iteritems():
+ metabolite_index = metabolite_to_index[metabolite]
+ linear_constraints.append((metabolite_index, c.index, coefficient))
+
+ #Add the new objective coefficients to the problem
+ lp.obj[:] = objective_coefficients
+ #Need to assign lp.matrix after constructing the whole list
+ #linear_constraints.sort() # if we wanted to be 100% deterministic
+ lp.matrix = linear_constraints
+
+ # make sure the objective sense is set in create_problem
+ objective_sense = kwargs.get("objective_sense", "maximize")
+ set_parameter(lp, "objective_sense", objective_sense)
+
+ return lp
+
+
+def change_variable_bounds(lp, index, lower_bound, upper_bound):
+ lp.cols[index].bounds = (lower_bound, upper_bound)
+
+
+def change_variable_objective(lp, index, objective):
+ lp.obj[index] = objective
+
+
+def update_problem(lp, cobra_model, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ lp: A gurobi problem object
+
+ cobra_model: the cobra.Model corresponding to 'lp'
+
+ """
+ #When reusing the basis only assume that the objective coefficients or bounds can change
+ #BUG with changing / unchanging the basis
+ index_to_metabolite = dict(zip(range(len(cobra_model.metabolites)),
+ cobra_model.metabolites))
+ index_to_reaction = dict(zip(range(len(cobra_model.reactions)),
+ cobra_model.reactions))
+ reaction_to_index = dict(zip(index_to_reaction.values(),
+ index_to_reaction.keys()))
+
+ try:
+ new_objective = kwargs['new_objective']
+ except:
+ new_objective = None
+ if new_objective is not None:
+ objective_coefficients = []
+ for c in lp.cols: # Iterate over all rows
+ the_reaction = index_to_reaction[c.index]
+ c.name = the_reaction.id
+ c.bounds = the_reaction.lower_bound, the_reaction.upper_bound
+ objective_coefficients.append(float(the_reaction.objective_coefficient))
+ c.kind = variable_kind_dict[the_reaction.variable_kind]
+ #Add the new objective coefficients to the problem
+ lp.obj[:] = objective_coefficients
+ else:
+ for c in lp.cols: # Iterate over all rows
+ the_reaction = index_to_reaction[c.index]
+ c.name = the_reaction.id
+ c.bounds = the_reaction.lower_bound, the_reaction.upper_bound
+ c.kind = variable_kind_dict[the_reaction.variable_kind]
+
+def change_coefficient(lp, met_index, rxn_index, value):
+ col = lp.cols[rxn_index]
+ mat = col.matrix
+ for i, entry in enumerate(mat):
+ if entry[0] == met_index:
+ mat[i] = (met_index, value)
+ col.matrix = mat
+ return
+ # need to append
+ mat.append((met_index, value))
+ col.matrix = mat
+
+
+def solve_problem(lp, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ lp: a pyGLPK 0.3 problem
+
+ For pyGLPK it is necessary to provide the following parameters, if they
+ are not provided then the default settings will be used: tolerance_feasibility,
+ tolerance_integer, lp_method, and objective_sense
+
+ """
+ parameters = parameter_defaults.copy()
+ parameters.update(kwargs)
+ if "quadratic_component" in parameters:
+ if parameters.pop('quadratic_component') is not None:
+ raise Exception('glpk cannot solve QPs')
+ lp_args = {} # only for lp
+ extra_args = {} # added to both lp and milp
+ lp_args["tol_bnd"] = parameters.pop("tolerance_feasibility")
+ lp_args["tol_dj"] = lp_args["tol_bnd"]
+ method = parameters.pop("lp_method")
+ if isinstance(method, int):
+ lp_args["meth"] = method
+ else:
+ lp_args["meth"] = METHOD_TYPES[method]
+ if "time_limit" in parameters:
+ extra_args["tm_lim"] = int(parameters.pop("time_limit") * 1000)
+ if "iteration_limit" in parameters:
+ extra_args["it_lim"] = parameters.pop("iteration_limit")
+ if "objective_sense" in parameters:
+ set_parameter(lp, "objective_sense", parameters.pop("objective_sense"))
+ tol_int = parameters.pop("tolerance_integer")
+ if len(parameters) > 0:
+ raise ValueError("Unknown parameters: " + ", ".join(parameters))
+ lp_args.update(extra_args)
+ # solve the problem
+ lp.simplex(**lp_args)
+ if lp.kind == int:
+ # For MILPs, it is faster to solve LP then move to MILP
+ lp.integer(tol_int=tol_int, **extra_args)
+ return get_status(lp)
+
+
+def solve(cobra_model, **kwargs):
+ """Smart interface to optimization solver functions that will convert
+ the cobra_model to a solver object, set the parameters, and try multiple
+ methods to get an optimal solution before returning the solver object and
+ a cobra.Solution (which is attached to cobra_model.solution)
+
+ cobra_model: a cobra.Model
+
+ returns a dict: {'the_problem': solver specific object, 'the_solution':
+ cobra.Solution for the optimization problem'}
+
+
+ """
+ #Start out with default parameters and then modify if
+ #new onese are provided
+ the_parameters = deepcopy(parameter_defaults)
+ if kwargs:
+ the_parameters.update(kwargs)
+
+ for i in ["new_objective", "update_problem", "the_problem"]:
+ if i in the_parameters:
+ raise Exception("Option %s removed" % i)
+ if 'error_reporting' in the_parameters:
+ warn("error_reporting deprecated")
+
+ #Create a new problem
+ lp = create_problem(cobra_model, **the_parameters)
+
+ ###Try to solve the problem using other methods if the first method doesn't work
+ lp_method = the_parameters['lp_method']
+ the_methods = [1, 2, 3]
+ if lp_method in the_methods:
+ the_methods.remove(lp_method)
+ #Start with the user specified method
+ the_methods.insert(0, lp_method)
+ for the_method in the_methods:
+ the_parameters['lp_method'] = the_method
+ try:
+ status = solve_problem(lp, **the_parameters)
+ except Exception as e:
+ status = 'failed'
+ if status == 'optimal':
+ break
+
+ return format_solution(lp, cobra_model)
diff --git a/cobra/solvers/glpk_solver_java.py b/cobra/solvers/glpk_solver_java.py
new file mode 100644
index 0000000..0777b36
--- /dev/null
+++ b/cobra/solvers/glpk_solver_java.py
@@ -0,0 +1,365 @@
+##cobra.solvers.glpk_solver
+#This script provides wrappers for libglpk-java 1.0.22 and pyglpk 0.3
+from warnings import warn
+from copy import deepcopy
+###solver specific parameters
+from .parameters import status_dict, variable_kind_dict, \
+ sense_dict, parameter_mappings, parameter_defaults, \
+ objective_senses, default_objective_sense
+
+from ..core.Solution import Solution
+from time import time
+solver_name = 'glpk'
+sense_dict = eval(sense_dict[solver_name])
+#Functions that are different for java implementation of a solver
+
+from os import name
+if name != "java":
+ raise Exception("jython only")
+
+warn("cobra.solvers.glpk_solver isn't mature. consider using gurobi or cplex")
+from org.gnu.glpk import GLPK, GLPKConstants, glp_smcp, glp_iocp
+variable_kind_dict = eval(variable_kind_dict['%s_%s'%(solver_name,
+ __name)])
+status_dict = eval(status_dict['%s_%s'%(solver_name,
+ __name)])
+objective_senses = objective_senses['%s_%s'%(solver_name,
+ __name)]
+parameter_mappings = parameter_mappings['%s_%s'%(solver_name,
+ __name)]
+parameter_defaults = parameter_defaults['%s_%s'%(solver_name,
+ __name)]
+
+class Problem():
+ """Create a more pythonesqe class to wrap the key
+ features of the libglpk-java functions.
+
+ """
+ def __init__(self):
+ """the attributes g, lp, mip should be made private
+ """
+ self._g = GLPK
+ self._lp= GLPK.glp_create_prob()
+ self._simplex_parameters = glp_smcp()
+ self._mip_parameters = None
+ self._g.glp_init_smcp(self._simplex_parameters)
+ self.status = self.objective_value = None
+ self._mip = False
+ def set_name(self, name=''):
+ self._g.glp_set_prob_name(self._lp, name)
+
+ def solve(self):
+ try:
+ self._g.glp_simplex(self._lp,
+ self._simplex_parameters)
+ if self._mip:
+ #perform the MIP
+ setattr(self._mip_parameters, 'msg_lev',
+ self._simplex_parameters.msg_lev)
+ self._g.glp_intopt(self._lp, self._mip_parameters)
+ self.status = self.get_status()
+ self.objective_value = self.get_objective_value()
+ except:
+ self.status = 'failed'
+ return self.status
+
+ def get_status(self):
+ if self._mip:
+ status = self._g.glp_mip_status(self._lp)
+ else:
+ status = self._g.glp_get_status(self._lp)
+ return status_dict[status]
+
+ def set_objective_sense(self, parameter_value='maximize'):
+ self._g.glp_set_obj_dir(self._lp,
+ eval(objective_senses[parameter_value]))
+
+ def set_parameter(self, parameter_name, parameter_value, warning=False):
+ if parameter_name == 'objective_sense':
+ self.set_objective_sense(parameter_value)
+ else:
+ if parameter_name == 'meth' and parameter_value not in [1,2,3]:
+ parameter_value = 1
+ try:
+ setattr(self._simplex_parameters, parameter_name,
+ parameter_value)
+ except Exception, e1:
+ try:
+ setattr(self._mip_parameters, parameter_name,
+ parameter_value)
+ except Exception, e2:
+ if warning:
+ print "Could not set simplex parameter " +\
+ "%s: %s"%(parameter_name, repr(e1))
+
+ if self._mip_parameters is not None:
+ print "Could not set mip parameter " +\
+ "%s: %s"%(parameter_name, repr(e2))
+ def get_objective_value(self):
+ if self._mip:
+ tmp_value = self._g.glp_mip_obj_val(self._lp)
+ else:
+ tmp_value = self._g.glp_get_obj_val(self._lp)
+ return tmp_value
+
+ def create_problem(self, cobra_model):
+ g = self._g
+ lp = self._lp
+ number_of_reactions = len(cobra_model.reactions)
+ number_of_metabolites = len(cobra_model.metabolites)
+ g.glp_add_cols(lp, number_of_reactions)
+ reaction_to_index = {}
+ objective_dict = {}
+ #Add in the variables
+ tmp_kinds = []
+ for i, the_reaction in enumerate(cobra_model.reactions):
+ i_offset = i + 1
+ reaction_to_index[the_reaction] = i_offset
+ if the_reaction.objective_coefficient != 0:
+ objective_dict[i_offset] = the_reaction.objective_coefficient
+ g.glp_set_col_name(lp, i_offset, the_reaction.id)
+ tmp_kinds.append(the_reaction.variable_kind)
+ the_kind = variable_kind_dict[the_reaction.variable_kind]
+ lower_bound = the_reaction.lower_bound
+ upper_bound = the_reaction.upper_bound
+ #Note. It is possible to have unbounded or one-bound variables
+ if lower_bound == upper_bound:
+ bound_kind = GLPKConstants.GLP_FX
+ else:
+ bound_kind = GLPKConstants.GLP_DB
+ g.glp_set_col_kind(lp, i_offset, the_kind)
+ g.glp_set_col_bnds(lp, i_offset,
+ bound_kind, the_reaction.lower_bound,
+ the_reaction.upper_bound)
+ tmp_kinds = set(tmp_kinds)
+ if 'integer' in tmp_kinds or 'binary' in tmp_kinds:
+ self._mip = True
+ self._mip_parameters = glp_iocp()
+ g.glp_init_iocp(self._mip_parameters)
+ #create constraints
+ g.glp_add_rows(lp, number_of_metabolites)
+ row_indices = []
+ column_indices = []
+ constraint_values = []
+ for i, the_metabolite in enumerate(cobra_model.metabolites):
+ i_offset = i + 1
+ g.glp_set_row_name(lp, i_offset, the_metabolite.id)
+
+ lower_bound = upper_bound = the_metabolite._bound
+ constraint_sense = sense_dict[the_metabolite._constraint_sense]
+ if constraint_sense == 'E':
+ bound_type = GLPKConstants.GLP_FX
+ elif constraint_sense == 'L':
+ bound_type = GLPKConstants.GLP_UP
+ elif constraint_sense == 'G':
+ bound_type = GLPKConstants.GLP_LO
+ elif constraint_sense == 'U':
+ bound_type = GLPKConstants.GLP_FR
+ elif hasattr(lower_bound, '__iter__'):
+ lower_bound, upper_bound = lower_bound[:2]
+ bound_type = GLPKConstants.GLP_DB
+
+
+ g.glp_set_row_bnds(lp, i_offset, bound_type,
+ lower_bound, upper_bound)
+
+ [(row_indices.append(i_offset),
+ column_indices.append(reaction_to_index[k]),
+ constraint_values.append(k._metabolites[the_metabolite]))
+ for k in the_metabolite._reaction]
+
+ #Load the constraints into the lp. Need to use
+ #typed arrays.
+ number_of_constraints = len(row_indices)
+ i_array = g.new_intArray(number_of_constraints)
+ j_array = g.new_intArray(number_of_constraints)
+ v_array = g.new_doubleArray(number_of_constraints)
+ for a, (i, j, v) in enumerate(zip(row_indices,
+ column_indices,
+ constraint_values)):
+ g.intArray_setitem(i_array, a+1, i)
+ g.intArray_setitem(j_array, a+1, j)
+ g.doubleArray_setitem(v_array, a+1, v)
+ g.glp_load_matrix(lp, number_of_constraints, i_array,
+ j_array, v_array)
+ # the following lines often cause memory crashes
+ g.delete_intArray(i_array)
+ g.delete_intArray(j_array)
+ g.delete_doubleArray(v_array)
+
+
+ g.glp_set_obj_name(lp, "z")
+ [g.glp_set_obj_coef(lp, k, v)
+ for k, v in objective_dict.iteritems()]
+
+
+
+
+
+
+__solver_class = Problem
+
+def set_parameter(lp, parameter_name, parameter_value):
+ lp.set_parameter(parameter_name, parameter_value)
+
+
+def get_status(lp):
+ return lp.get_status()
+
+def format_solution(lp, cobra_model, **kwargs):
+ """
+
+ """
+ status = get_status(lp)
+ if not lp._mip:
+ try:
+ x = [lp._g.glp_get_col_prim(lp._lp, i + 1)
+ for i in range(len(cobra_model.reactions))]
+ x_dict = dict(zip(cobra_model.reactions, x))
+
+ y = [lp._g.glp_get_row_dual(lp._lp, i + 1)
+ for i in range(len(cobra_model.metabolites))]
+ y_dict = dict(zip(cobra_model.metabolites, y))
+
+ objective_value = lp.objective_value
+ except Exception, e:
+ print repr(e)
+ y = y_dict = x = x_dict = objective_value = None
+ #print status
+ else:
+ try:
+ x = [lp._g.glp_mip_col_val(lp._lp, i + 1)
+ for i in range(len(cobra_model.reactions))]
+ x_dict = dict(zip(cobra_model.reactions, x))
+ y = y_dict = None
+ objective_value = lp.objective_value
+ except:
+ y = y_dict = x = x_dict = objective_value = None
+
+ return(Solution(objective_value, x=x, x_dict=x_dict, y=y,
+ y_dict=y_dict, status=status))
+def create_problem(cobra_model, **kwargs):
+ """Solver-specific method for constructing a solver problem from
+ a cobra.Model. This can be tuned for performance using kwargs
+
+
+ """
+ the_parameters = parameter_defaults
+ if kwargs:
+ the_parameters = deepcopy(parameter_defaults)
+ the_parameters.update(kwargs)
+ quadratic_component = the_parameters['quadratic_component']
+ new_objective = the_parameters['new_objective']
+ if quadratic_component is not None:
+ raise Exception('%s cannot solve QPs, try a different solver'%solver_name)
+ lp = Problem() # Create empty problem instance
+ lp.create_problem(cobra_model)
+ [set_parameter(lp, parameter_mappings[k], v)
+ for k, v in the_parameters.iteritems() if k in parameter_mappings]
+ return(lp)
+
+def update_problem(lp, cobra_model, **kwargs):
+ """
+ Assumes that neither Metabolites nor Reaction have been
+ added or removed.
+
+ Currently only deals with reaction bounds and objective
+ coefficients.
+
+ """
+ g = lp._g
+ l = lp._lp
+ for i, the_reaction in enumerate(cobra_model.reactions):
+ lower_bound = float(the_reaction.lower_bound)
+ upper_bound = float(the_reaction.upper_bound)
+ objective_coefficient = float(the_reaction.objective_coefficient)
+ if lower_bound == upper_bound:
+ bound_type = GLPKConstants.GLP_FX
+ else:
+ bound_type = GLPKConstants.GLP_DB
+ g.glp_set_col_bnds(l, i + 1, bound_type, lower_bound, upper_bound)
+ g.glp_set_obj_coef(l, i + 1, objective_coefficient)
+
+
+def solve_problem(lp, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ """
+ #Update parameter settings if provided
+ if kwargs:
+ [set_parameter(lp, parameter_mappings[k], v)
+ for k, v in kwargs.iteritems() if k in parameter_mappings]
+ try:
+ print_solver_time = kwargs['print_solver_time']
+ start_time = time()
+ except:
+ print_solver_time = False
+ lp_method = lp._simplex_parameters.meth
+ lp.solve()
+ status = get_status(lp)
+ if print_solver_time:
+ print 'optimize time: %f'%(time() - start_time)
+ return status
+
+
+def solve(cobra_model, **kwargs):
+ """Smart interface to optimization solver functions that will convert
+ the cobra_model to a solver object, set the parameters, and try multiple
+ methods to get an optimal solution before returning the solver object and
+ a cobra.Solution (which is attached to cobra_model.solution)
+
+ cobra_model: a cobra.Model
+
+ returns a dict: {'the_problem': solver specific object, 'the_solution':
+ cobra.Solution for the optimization problem'}
+
+
+ """
+ #Start out with default parameters and then modify if
+ #new onese are provided
+ the_parameters = deepcopy(parameter_defaults)
+ if kwargs:
+ the_parameters.update(kwargs)
+ #Update objectives if they are new.
+ error_reporting = the_parameters['error_reporting']
+ if 'new_objective' in the_parameters and \
+ the_parameters['new_objective'] not in ['update problem', None]:
+ from ..flux_analysis.objective import update_objective
+ update_objective(cobra_model, the_parameters['new_objective'])
+ if 'the_problem' in the_parameters:
+ the_problem = the_parameters['the_problem']
+ else:
+ the_problem = None
+ if isinstance(the_problem, __solver_class):
+ #Update the problem with the current cobra_model
+ lp = the_problem
+ update_problem(lp, cobra_model, **the_parameters)
+ else:
+ #Create a new problem
+ lp = create_problem(cobra_model, **the_parameters)
+ #Deprecated way for returning a solver problem created from a cobra_model
+ #without performing optimization
+ if the_problem == 'setup':
+ return lp
+ ###Try to solve the problem using other methods if the first method doesn't work
+ lp_method = the_parameters['lp_method']
+ the_methods = [1, 2, 3]
+ if lp_method in the_methods:
+ the_methods.remove(lp_method)
+ #Start with the user specified method
+ the_methods.insert(0, lp_method)
+ for the_method in the_methods:
+ the_parameters['lp_method'] = the_method
+ try:
+ status = solve_problem(lp, **the_parameters)
+ except:
+ status = 'failed'
+ if status == 'optimal':
+ break
+
+ the_solution = format_solution(lp, cobra_model)
+ if status != 'optimal' and error_reporting:
+ print '%s failed: %s'%(solver_name, status)
+ cobra_model.solution = the_solution
+ solution = {'the_problem': lp, 'the_solution': the_solution}
+ return solution
diff --git a/cobra/solvers/gurobi_solver.py b/cobra/solvers/gurobi_solver.py
new file mode 100644
index 0000000..ec7a7dd
--- /dev/null
+++ b/cobra/solvers/gurobi_solver.py
@@ -0,0 +1,252 @@
+# Interface to gurobipy
+
+from warnings import warn
+from itertools import izip
+
+from gurobipy import Model, LinExpr, GRB, QuadExpr
+
+
+from ..core.Solution import Solution
+from ..external.six import string_types
+
+solver_name = 'gurobi'
+_SUPPORTS_MILP = True
+
+
+# set solver-specific parameters
+parameter_defaults = {'objective_sense': 'maximize',
+ 'tolerance_optimality': 1e-6,
+ 'tolerance_feasibility': 1e-6,
+ 'tolerance_integer': 1e-9,
+ # This is primal simplex, default is -1 (automatic)
+ 'lp_method': 0,
+ 'verbose': False,
+ 'log_file': ''}
+parameter_mappings = {'log_file': 'LogFile',
+ 'lp_method': 'Method',
+ 'threads': 'Threads',
+ 'objective_sense': 'ModelSense',
+ 'output_verbosity': 'OutputFlag',
+ 'verbose': 'OutputFlag',
+ 'quadratic_precision': 'Quad',
+ 'time_limit': 'TimeLimit',
+ 'tolerance_feasibility': 'FeasibilityTol',
+ 'tolerance_markowitz': 'MarkowitzTol',
+ 'tolerance_optimality': 'OptimalityTol',
+ 'iteration_limit': 'IterationLimit',
+ 'tolerance_barrier': 'BarConvTol',
+ 'tolerance_integer': 'IntFeasTol',
+ 'MIP_gap_abs': 'MIPGapAbs',
+ 'MIP_gap': 'MIPGap'}
+# http://www.gurobi.com/documentation/5./6/reference-manual/method
+METHODS = {"auto": -1, "primal": 0, "dual": 1, "barrier": 2,
+ "concurrent": 3, "deterministic concurrent": 4}
+variable_kind_dict = {'continuous': GRB.CONTINUOUS, 'integer': GRB.INTEGER}
+sense_dict = {'E': GRB.EQUAL, 'L': GRB.LESS_EQUAL, 'G': GRB.GREATER_EQUAL}
+objective_senses = {'maximize': GRB.MAXIMIZE, 'minimize': GRB.MINIMIZE}
+status_dict = {GRB.OPTIMAL: 'optimal', GRB.INFEASIBLE: 'infeasible',
+ GRB.UNBOUNDED: 'unbounded', GRB.TIME_LIMIT: 'time_limit'}
+
+def get_status(lp):
+ status = lp.status
+ if status in status_dict:
+ status = status_dict[status]
+ else:
+ status = 'failed'
+ return status
+
+def get_objective_value(lp):
+ return lp.ObjVal
+
+def format_solution(lp, cobra_model, **kwargs):
+ status = get_status(lp)
+ if status not in ('optimal', 'time_limit'):
+ the_solution = Solution(None, status=status)
+ else:
+ objective_value = lp.ObjVal
+ x = [v.X for v in lp.getVars()]
+ x_dict = {r.id: value for r, value in izip(cobra_model.reactions, x)}
+ if lp.isMIP:
+ y = y_dict = None # MIP's don't have duals
+ else:
+ y = [c.Pi for c in lp.getConstrs()]
+ y_dict = {m.id: value for m, value in izip(cobra_model.metabolites, y)}
+ the_solution = Solution(objective_value, x=x, x_dict=x_dict, y=y,
+ y_dict=y_dict, status=status)
+ return(the_solution)
+
+def set_parameter(lp, parameter_name, parameter_value):
+ if parameter_name == 'ModelSense' or parameter_name == "objective_sense":
+ lp.setAttr('ModelSense', objective_senses[parameter_value])
+ elif parameter_name == 'reuse_basis' and not parameter_value:
+ lp.reset()
+ else:
+ parameter_name = parameter_mappings.get(parameter_name, parameter_name)
+ if parameter_name == "Method" and isinstance(parameter_value,
+ string_types):
+ parameter_value = METHODS[parameter_value]
+ lp.setParam(parameter_name, parameter_value)
+
+def change_variable_bounds(lp, index, lower_bound, upper_bound):
+ variable = lp.getVarByName(str(index))
+ variable.lb = lower_bound
+ variable.ub = upper_bound
+
+
+def change_variable_objective(lp, index, objective):
+ variable = lp.getVarByName(str(index))
+ variable.obj = objective
+
+
+def change_coefficient(lp, met_index, rxn_index, value):
+ met = lp.getConstrByName(str(met_index))
+ rxn = lp.getVarByName(str(rxn_index))
+ lp.chgCoeff(met, rxn, value)
+
+
+def update_problem(lp, cobra_model, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ lp: A gurobi problem object
+
+ cobra_model: the cobra.Model corresponding to 'lp'
+
+ """
+ #When reusing the basis only assume that the objective coefficients or bounds can change
+ try:
+ quadratic_component = kwargs['quadratic_component']
+ if quadratic_component is not None:
+ warn("update_problem does not yet take quadratic_component as a parameter")
+ except:
+ quadratic_component = None
+
+ if 'copy_problem' in kwargs and kwargs['copy_problem']:
+ lp = lp.copy()
+ if 'reuse_basis' in kwargs and not kwargs['reuse_basis']:
+ lp.reset()
+ for the_variable, the_reaction in zip(lp.getVars(),
+ cobra_model.reactions):
+ the_variable.lb = float(the_reaction.lower_bound)
+ the_variable.ub = float(the_reaction.upper_bound)
+ the_variable.obj = float(the_reaction.objective_coefficient)
+
+
+def create_problem(cobra_model, quadratic_component=None, **kwargs):
+ """Solver-specific method for constructing a solver problem from
+ a cobra.Model. This can be tuned for performance using kwargs
+
+
+ """
+ lp = Model("")
+
+ the_parameters = parameter_defaults
+ if kwargs:
+ the_parameters = parameter_defaults.copy()
+ the_parameters.update(kwargs)
+
+ for k, v in the_parameters.iteritems():
+ set_parameter(lp, k, v)
+
+
+ # Create variables
+ #TODO: Speed this up
+ variable_list = [lp.addVar(float(x.lower_bound),
+ float(x.upper_bound),
+ float(x.objective_coefficient),
+ variable_kind_dict[x.variable_kind],
+ str(i))
+ for i, x in enumerate(cobra_model.reactions)]
+ reaction_to_variable = dict(zip(cobra_model.reactions,
+ variable_list))
+ # Integrate new variables
+ lp.update()
+
+ #Constraints are based on mass balance
+ #Construct the lin expression lists and then add
+ #TODO: Speed this up as it takes about .18 seconds
+ #HERE
+ for i, the_metabolite in enumerate(cobra_model.metabolites):
+ constraint_coefficients = []
+ constraint_variables = []
+ for the_reaction in the_metabolite._reaction:
+ constraint_coefficients.append(the_reaction._metabolites[the_metabolite])
+ constraint_variables.append(reaction_to_variable[the_reaction])
+ #Add the metabolite to the problem
+ lp.addConstr(LinExpr(constraint_coefficients, constraint_variables),
+ sense_dict[the_metabolite._constraint_sense.upper()],
+ the_metabolite._bound,
+ str(i))
+
+ # Set objective to quadratic program
+ if quadratic_component is not None:
+ set_quadratic_objective(lp, quadratic_component)
+
+ lp.update()
+ return(lp)
+
+
+def set_quadratic_objective(lp, quadratic_objective):
+ if not hasattr(quadratic_objective, 'todok'):
+ raise Exception('quadratic component must have method todok')
+ variable_list = lp.getVars()
+ linear_objective = lp.getObjective()
+ # If there already was a quadratic expression set, this will be quadratic
+ # and we need to extract the linear component
+ if hasattr(linear_objective, "getLinExpr"): # duck typing
+ linear_objective = linear_objective.getLinExpr()
+ gur_quadratic_objective = QuadExpr()
+ for (index_0, index_1), the_value in quadratic_objective.todok().items():
+ # gurobi does not multiply by 1/2 (only does v^T Q v)
+ gur_quadratic_objective.addTerms(the_value * 0.5,
+ variable_list[index_0],
+ variable_list[index_1])
+ # this adds to the existing quadratic objectives
+ lp.setObjective(gur_quadratic_objective + linear_objective)
+
+def solve_problem(lp, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ """
+ #Update parameter settings if provided
+ for k, v in kwargs.iteritems():
+ set_parameter(lp, k, v)
+
+ lp.update()
+ lp.optimize()
+ status = get_status(lp)
+ return status
+
+
+def solve(cobra_model, **kwargs):
+ """
+
+ """
+ for i in ["new_objective", "update_problem", "the_problem"]:
+ if i in kwargs:
+ raise Exception("Option %s removed" % i)
+ if 'error_reporting' in kwargs:
+ warn("error_reporting deprecated")
+ kwargs.pop('error_reporting')
+
+ #Create a new problem
+ lp = create_problem(cobra_model, **kwargs)
+
+ ###Try to solve the problem using other methods if the first method doesn't work
+ try:
+ lp_method = kwargs['lp_method']
+ except:
+ lp_method = 0
+ the_methods = [0, 2, 1]
+ if lp_method in the_methods:
+ the_methods.remove(lp_method)
+ #Start with the user specified method
+ the_methods.insert(0, lp_method)
+ for the_method in the_methods:
+ try:
+ status = solve_problem(lp, lp_method=the_method)
+ except:
+ status = 'failed'
+ if status == 'optimal':
+ break
+
+ return format_solution(lp, cobra_model)
diff --git a/cobra/solvers/gurobi_solver_java.py b/cobra/solvers/gurobi_solver_java.py
new file mode 100644
index 0000000..4cea19f
--- /dev/null
+++ b/cobra/solvers/gurobi_solver_java.py
@@ -0,0 +1,280 @@
+##cobra.solvers.gurobi_solver
+#Interface to the gurobi 5.0.1 python and java solvers
+#QPs are not yet supported on java
+from warnings import warn
+from os import name as __name
+from copy import deepcopy
+###solver specific parameters
+from .parameters import status_dict, variable_kind_dict, \
+ sense_dict, parameter_mappings, parameter_defaults, \
+ objective_senses, default_objective_sense
+
+from ..core.Solution import Solution
+from time import time
+solver_name = 'gurobi'
+objective_senses = objective_senses[solver_name]
+parameter_mappings = parameter_mappings[solver_name]
+parameter_defaults = parameter_defaults[solver_name]
+#Functions that are different for java implementation of a solver
+## from jarray import array as j_array
+## def array(x, variable_type='d'):
+## return j_array(x, variable_type)
+
+from gurobi import GRB
+variable_kind_dict = eval(variable_kind_dict[solver_name])
+status_dict = eval(status_dict[solver_name])
+
+from gurobi import GRBModel, GRBEnv
+from gurobi import GRBLinExpr
+from gurobi import GRBQuadExpr as QuadExpr
+__solver_class = GRBModel
+#TODO: Create a pythonesqe class similar to in glpk_solver
+def Model(name=''):
+ grb_environment = GRBEnv(name)
+ tmp_model = GRBModel(grb_environment)
+ return tmp_model
+def LinExpr(coefficients, variables):
+ coefficients, variables = map(list, [coefficients, variables])
+ tmp_expression = GRBLinExpr()
+ tmp_expression.addTerms(coefficients, variables)
+ return tmp_expression
+
+def get_status(lp):
+ status = lp.get(GRB.IntAttr.Status)
+ if status in status_dict:
+ status = status_dict[status]
+ else:
+ status = 'failed'
+ return status
+
+def set_parameter(lp, parameter_name, parameter_value):
+ """Sets model parameters and attributes.
+
+ """
+ grb_environment = lp.getEnv()
+ try:
+ if hasattr(GRB.DoubleParam, parameter_name):
+ grb_environment.set(eval('GRB.DoubleParam.%s'%parameter_name),
+ parameter_value)
+ elif hasattr(GRB.IntParam, parameter_name):
+ grb_environment.set(eval('GRB.IntParam.%s'%parameter_name),
+ parameter_value)
+ elif hasattr(GRB.StringParam, parameter_name):
+ grb_environment.set(eval('GRB.StringParam.%s'%parameter_name),
+ parameter_value)
+ elif hasattr(GRB.IntAttr, parameter_name):
+ if parameter_name == 'ModelSense':
+ parameter_value = objective_senses[parameter_value]
+ lp.set(eval('GRB.IntAttr.%s'%parameter_name),
+ parameter_value)
+ else:
+ warn("%s is not a DoubleParam, IntParam, StringParam, IntAttr"%parameter_name)
+ ## raise Exception("%s is not a DoubleParam, IntParam, StringParam, IntAttr"%parameter_name)
+ except Exception, e:
+ warn("%s %s didn't work %s"%(parameter_name, parameter_value, e))
+
+def get_objective_value(lp):
+ return lp.get(GRB.DoubleAttr.ObjVal)
+
+def format_solution(lp, cobra_model, **kwargs):
+ """
+ """
+ status = get_status(lp)
+ if status not in ('optimal', 'time_limit'):
+ the_solution = Solution(None, status=status)
+ else:
+ x_dict = dict(((v.get(GRB.StringAttr.VarName),
+ v.get(GRB.DoubleAttr.X))
+ for v in lp.getVars()))
+ x = [x_dict[v.id] for v in cobra_model.reactions]
+ objective_value = lp.get(GRB.DoubleAttr.ObjVal)
+ if lp.get(GRB.IntAttr.IsMIP) != 0:
+ y = y_dict = None #MIP's don't have duals
+ else:
+ y_dict = dict(((c.get(GRB.StringAttr.ConstrName), c.get(GRB.DoubleAttr.Pi))
+ for c in lp.getConstrs()))
+ y = list([y_dict[v.id] for v in cobra_model.metabolites])
+ the_solution = Solution(objective_value, x=x, x_dict=x_dict, y=y,
+ y_dict=y_dict, status=status)
+ return(the_solution)
+
+def update_problem(lp, cobra_model, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ lp: A gurobi problem object
+
+ cobra_model: the cobra.Model corresponding to 'lp'
+
+ """
+ #When reusing the basis only assume that the objective coefficients or bounds can change
+ try:
+ quadratic_component = kwargs['quadratic_component']
+ if quadratic_component is not None:
+ warn("update_problem does not yet take quadratic_component as a parameter")
+ except:
+ quadratic_component = None
+
+ if 'reuse_basis' in kwargs and not kwargs['reuse_basis']:
+ lp.reset()
+ for the_variable, the_reaction in zip(lp.getVars(),
+ cobra_model.reactions):
+ the_variable.set(GRB.DoubleAttr.LB, float(the_reaction.lower_bound))
+ the_variable.set(GRB.DoubleAttr.UB, float(the_reaction.upper_bound))
+ the_variable.set(GRB.DoubleAttr.Obj, float(the_reaction.objective_coefficient))
+
+
+
+
+###
+sense_dict = eval(sense_dict[solver_name])
+def create_problem(cobra_model, **kwargs):
+ """Solver-specific method for constructing a solver problem from
+ a cobra.Model. This can be tuned for performance using kwargs
+
+
+ """
+ lp = Model("")
+ #Silence the solver
+ set_parameter(lp, 'OutputFlag', 0)
+
+ the_parameters = parameter_defaults
+ if kwargs:
+ the_parameters = deepcopy(parameter_defaults)
+ the_parameters.update(kwargs)
+
+ [set_parameter(lp, parameter_mappings[k], v)
+ for k, v in the_parameters.iteritems() if k in parameter_mappings]
+ quadratic_component = the_parameters['quadratic_component']
+ objective_sense = objective_senses[the_parameters['objective_sense']]
+
+
+ # Create variables
+ #TODO: Speed this up
+ variable_list = [lp.addVar(float(x.lower_bound),
+ float(x.upper_bound),
+ float(x.objective_coefficient),
+ variable_kind_dict[x.variable_kind],
+ x.id)
+ for x in cobra_model.reactions]
+ reaction_to_variable = dict(zip(cobra_model.reactions,
+ variable_list))
+ # Integrate new variables
+ lp.update()
+ #Set objective to quadratic program
+ if quadratic_component is not None:
+ if not hasattr(quadratic_component, 'todok'):
+ raise Exception('quadratic component must have method todok')
+
+ quadratic_objective = QuadExpr()
+ for (index_0, index_1), the_value in quadratic_component.todok().items():
+ quadratic_objective.addTerms(the_value,
+ variable_list[index_0],
+ variable_list[index_1])
+ #Does this override the linear objective coefficients or integrate with them?
+ lp.setObjective(quadratic_objective, sense=objective_sense)
+ #Constraints are based on mass balance
+ #Construct the lin expression lists and then add
+ #TODO: Speed this up as it takes about .18 seconds
+ #HERE
+ for the_metabolite in cobra_model.metabolites:
+ constraint_coefficients = []
+ constraint_variables = []
+ for the_reaction in the_metabolite._reaction:
+ constraint_coefficients.append(the_reaction._metabolites[the_metabolite])
+ constraint_variables.append(reaction_to_variable[the_reaction])
+ #Add the metabolite to the problem
+ lp.addConstr(LinExpr(constraint_coefficients, constraint_variables),
+ sense_dict[the_metabolite._constraint_sense.upper()],
+ the_metabolite._bound,
+ the_metabolite.id)
+
+
+
+ return(lp)
+###
+
+###
+def solve_problem(lp, **kwargs):
+ """A performance tunable method for updating a model problem file
+
+ """
+ #Update parameter settings if provided
+ if kwargs:
+ [set_parameter(lp, parameter_mappings[k], v)
+ for k, v in kwargs.iteritems() if k in parameter_mappings]
+
+ try:
+ print_solver_time = kwargs['print_solver_time']
+ start_time = time()
+ except:
+ print_solver_time = False
+ lp.update()
+ #Different methods to try if lp_method fails
+ lp.optimize()
+ status = get_status(lp)
+ if print_solver_time:
+ print 'optimize time: %f'%(time() - start_time)
+ return status
+
+
+def solve(cobra_model, **kwargs):
+ """
+
+ """
+ #Start out with default parameters and then modify if
+ #new onese are provided
+ the_parameters = deepcopy(parameter_defaults)
+ if kwargs:
+ the_parameters.update(kwargs)
+ #Update objectives if they are new.
+ if 'new_objective' in the_parameters and \
+ the_parameters['new_objective'] not in ['update problem', None]:
+ from ..flux_analysis.objective import update_objective
+ update_objective(cobra_model, the_parameters['new_objective'])
+
+ if 'the_problem' in the_parameters:
+ the_problem = the_parameters['the_problem']
+ else:
+ the_problem = None
+ if 'error_reporting' in the_parameters:
+ error_reporting = the_parameters['error_reporting']
+ else:
+ error_reporting = False
+
+ if isinstance(the_problem, __solver_class):
+ #Update the problem with the current cobra_model
+ lp = the_problem
+ update_problem(lp, cobra_model, **the_parameters)
+ else:
+ #Create a new problem
+ lp = create_problem(cobra_model, **the_parameters)
+ #Deprecated way for returning a solver problem created from a cobra_model
+ #without performing optimization
+ if the_problem == 'setup':
+ return lp
+
+ ###Try to solve the problem using other methods if the first method doesn't work
+ try:
+ lp_method = the_parameters['lp_method']
+ except:
+ lp_method = 0
+ the_methods = [0, 2, 1]
+ if lp_method in the_methods:
+ the_methods.remove(lp_method)
+ #Start with the user specified method
+ the_methods.insert(0, lp_method)
+ for the_method in the_methods:
+ the_parameters['lp_method'] = the_method
+ try:
+ status = solve_problem(lp, **the_parameters)
+ except:
+ status = 'failed'
+ if status == 'optimal':
+ break
+ status = solve_problem(lp, **the_parameters)
+ the_solution = format_solution(lp, cobra_model)
+ if status != 'optimal' and error_reporting:
+ print '%s failed: %s'%(solver_name, status)
+ cobra_model.solution = the_solution
+ solution = {'the_problem': lp, 'the_solution': the_solution}
+ return solution
diff --git a/cobra/solvers/mosek.py b/cobra/solvers/mosek.py
new file mode 100644
index 0000000..d37892f
--- /dev/null
+++ b/cobra/solvers/mosek.py
@@ -0,0 +1,235 @@
+from __future__ import absolute_import, print_function
+
+import mosek
+
+from ..external.six.moves import zip
+from ..external.six import iteritems, string_types
+
+env = mosek.Env()
+
+solver_name = "mosek"
+__mosek_version__ = ".".join(str(i) for i in mosek.getversion())
+_SUPPORTS_MILP = True
+
+status_dict = {
+ mosek.solsta.dual_infeas_cer: 'infeasible',
+ mosek.solsta.prim_infeas_cer: 'infeasible',
+ mosek.solsta.optimal: 'optimal',
+ mosek.solsta.integer_optimal: 'optimal'}
+
+param_enums = {
+ "bi_clean_optimizer": mosek.optimizertype,
+ "cache_license": mosek.onoffkey,
+ "check_convexity": mosek.checkconvexitytype,
+ "compress_statfile": mosek.onoffkey,
+ "feasrepair_optimize": mosek.feasrepairtype,
+ "infeas_generic_names": mosek.onoffkey,
+ "infeas_prefer_primal": mosek.onoffkey,
+ "infeas_report_auto": mosek.onoffkey,
+ "license_allow_overuse": mosek.onoffkey,
+ "license_wait": mosek.onoffkey,
+ "mio_branch_dir": mosek.branchdir,
+ "mio_branch_priorities_use": mosek.onoffkey,
+ "mio_construct_sol": mosek.onoffkey,
+ "mio_cont_sol": mosek.miocontsoltype,
+ "mio_use_multithreaded_optimizer": mosek.onoffkey,
+ "presolve_lindep_use": mosek.onoffkey,
+ "presolve_use": mosek.presolvemode,
+ "sim_basis_factor_use": mosek.onoffkey,
+ "sim_degen": mosek.simdegen
+}
+
+param_aliases = {
+ "tolerance_feasibility": "basis_tol_x",
+ "time_limit": "optimizer_max_time",
+ "mip_gap_abs": "mio_tol_abs_gap",
+ "mip_gap": "mio_tol_rel_gap",
+ "tolerance_integer": "mio_tol_abs_relax_int"
+ }
+
+
+def _verbose_printer(text):
+ print(text)
+
+
+def create_problem(cobra_model, objective_sense="maximize",
+ **solver_parameters):
+ n_rxns = len(cobra_model.reactions)
+ n_mets = len(cobra_model.metabolites)
+ rxn_indexes = range(n_rxns)
+ met_indexes = range(n_mets)
+ # create lp object and set default parameters
+ lp = env.Task(0, 0)
+ set_objective_sense(lp, objective_sense)
+ lp.putdouparam(mosek.dparam.basis_tol_x, 1e-9)
+ lp.putdouparam(mosek.dparam.basis_tol_s, 1e-9)
+ lp.putdouparam(mosek.dparam.basis_rel_tol_s, 0.)
+ lp.putdouparam(mosek.dparam.simplex_abs_tol_piv, 1e-12)
+ lp.putdouparam(mosek.dparam.presolve_tol_aij, 1e-15)
+ lp.putdouparam(mosek.dparam.presolve_tol_abs_lindep, 0.)
+ lp.putdouparam(mosek.dparam.presolve_tol_s, 0.)
+ lp.putdouparam(mosek.dparam.presolve_tol_x, 1e-10)
+ lp.putintparam(mosek.iparam.concurrent_priority_intpnt, 0)
+ lp.putintparam(mosek.iparam.concurrent_num_optimizers, 1)
+ # add reactions/variables
+ lp.appendvars(len(cobra_model.reactions))
+ lp.putvarboundlist(
+ rxn_indexes,
+ (mosek.boundkey.ra,) * n_rxns,
+ [float(i.lower_bound) for i in cobra_model.reactions],
+ [float(i.upper_bound) for i in cobra_model.reactions],
+ )
+ lp.putclist(
+ rxn_indexes,
+ [float(i.objective_coefficient) for i in cobra_model.reactions])
+ integer_variables = [i for i, r in enumerate(cobra_model.reactions)
+ if r.variable_kind == "integer"]
+ lp.putvartypelist(
+ integer_variables,
+ (mosek.variabletype.type_int,) * len(integer_variables))
+
+ # add metabolites/constraints
+ c_sense_dict = {"E": mosek.boundkey.fx, "L": mosek.boundkey.up,
+ "G": mosek.boundkey.lo}
+ c_senses = [c_sense_dict[met._constraint_sense]
+ for met in cobra_model.metabolites]
+ bounds = cobra_model.metabolites.list_attr("_bound")
+ lp.appendcons(len(cobra_model.metabolites))
+ lp.putconboundlist(met_indexes, c_senses, bounds, bounds)
+
+ # add in the S matrix
+ for i, reaction in enumerate(cobra_model.reactions):
+ for metabolite, stoichiometry in iteritems(reaction._metabolites):
+ lp.putaij(cobra_model.metabolites.index(metabolite),
+ i, stoichiometry)
+ # set user-supplied parameters
+ for key, value in iteritems(solver_parameters):
+ set_parameter(lp, key, value)
+ return lp
+
+
+def set_objective_sense(lp, objective_sense):
+ if objective_sense == "maximize":
+ lp.putobjsense(mosek.objsense.maximize)
+ elif objective_sense == "minimize":
+ lp.putobjsense(mosek.objsense.minimize)
+ else:
+ raise ValueError("unknown objective sense '%s'" % objective_sense)
+
+
+def set_parameter(lp, parameter_name, parameter_value):
+ parameter_name = param_aliases.get(parameter_name, parameter_name)
+ if parameter_name == "verbose":
+ if parameter_value:
+ for streamtype in mosek.streamtype.values:
+ lp.set_Stream(streamtype, _verbose_printer)
+ else:
+ for streamtype in mosek.streamtype.values:
+ lp.set_Stream(streamtype, lambda x: None)
+ elif parameter_name == "objective_sense":
+ set_objective_sense(lp, parameter_value)
+ elif parameter_name == "quadratic_component":
+ if parameter_value is not None:
+ set_quadratic_objective(lp, parameter_value)
+ elif hasattr(mosek.dparam, parameter_name):
+ lp.putdouparam(getattr(mosek.dparam, parameter_name), parameter_value)
+ # Integer parameter section
+ # Many of these are enumerations. Therefore the value should be converted
+ # to the appropriate enum one.
+ elif isinstance(parameter_value, string_types) and \
+ parameter_name in param_enums:
+ lp.putintparam(getattr(mosek.iparam, parameter_name),
+ getattr(param_enums[parameter_name], parameter_value))
+ elif isinstance(parameter_value, bool) and parameter_name in param_enums:
+ if parameter_value:
+ set_parameter(lp, parameter_name, "on")
+ else:
+ set_parameter(lp, parameter_name, "off")
+ elif hasattr(mosek.iparam, parameter_name):
+ lp.putintparam(getattr(mosek.iparam, parameter_name), parameter_value)
+ else:
+ raise ValueError("unknown parameter '%s'" % parameter_name)
+
+
+def solve_problem(lp, **solver_parameters):
+ for key, value in iteritems(solver_parameters):
+ set_parameter(lp, key, value)
+ lp.optimize()
+ return get_status(lp)
+
+
+def solve(cobra_model, **solver_parameters):
+ lp = create_problem(cobra_model, **solver_parameters)
+ solve_problem(lp)
+ return format_solution(lp, cobra_model)
+
+
+def _get_soltype(lp):
+ """get the solution type
+
+ This is bas for LP and itg for MIP and QP
+
+ """
+ if lp.getnumintvar() > 0:
+ return mosek.soltype.itg
+ if lp.getnumqobjnz() > 0:
+ return mosek.soltype.itr
+ return mosek.soltype.bas
+
+
+def get_status(lp):
+ mosek_status = lp.getsolsta(_get_soltype(lp))
+ return status_dict.get(mosek_status, str(mosek_status))
+
+
+def get_objective_value(lp):
+ return lp.getprimalobj(_get_soltype(lp))
+
+
+def format_solution(lp, cobra_model):
+ soltype = _get_soltype(lp)
+ mosek_status = lp.getsolsta(soltype)
+ status = status_dict.get(mosek_status, str(mosek_status))
+ if status != "optimal":
+ return cobra_model.solution.__class__(None, status=status)
+ solution = cobra_model.solution.__class__(get_objective_value(lp))
+ solution.status = status
+ x = [0] * len(cobra_model.reactions)
+ lp.getxx(soltype, x)
+ solution.x = x
+ solution.x_dict = {rxn.id: value for rxn, value
+ in zip(cobra_model.reactions, x)}
+ if soltype == mosek.soltype.bas:
+ y = [0] * len(cobra_model.metabolites)
+ lp.gety(mosek.soltype.bas, y)
+ solution.y = y
+ solution.y_dict = {met.id: value for met, value
+ in zip(cobra_model.metabolites, y)}
+ return solution
+
+
+def change_variable_objective(lp, index, value):
+ lp.putcj(index, value)
+
+
+def change_variable_bounds(lp, index, lower_bound, upper_bound):
+ lp.putvarbound(index, mosek.boundkey.ra, lower_bound, upper_bound)
+
+
+def change_coefficient(lp, met_index, rxn_index, value):
+ lp.putaij(met_index, rxn_index, value)
+
+
+def set_quadratic_objective(lp, quadratic_objective):
+ if not hasattr(quadratic_objective, 'todok'):
+ raise Exception('quadratic component must be a sparse matrix')
+ row_indexes = []
+ col_indexes = []
+ values = []
+ for (index_0, index_1), value in iteritems(quadratic_objective.todok()):
+ # specify lower triangular only
+ if index_0 >= index_1:
+ row_indexes.append(index_0)
+ col_indexes.append(index_1)
+ values.append(value)
+ lp.putqobj(row_indexes, col_indexes, values)
diff --git a/cobra/solvers/parameters.py b/cobra/solvers/parameters.py
new file mode 100644
index 0000000..fd9be16
--- /dev/null
+++ b/cobra/solvers/parameters.py
@@ -0,0 +1,154 @@
+#This centralizes some of the common elements that are differently named across solvers.
+#These are stored as strings here to prevent problems associated with calling
+#solver objects for solver packages that aren't available
+from copy import deepcopy
+__objective_sense_cplex = {'maximize': 'Cplex.objective.sense.maximize',
+ 'minimize': 'Cplex.objective.sense.minimize'}
+__objective_sense_cplex_java = {'maximize': 'IloObjectiveSense.Maximize',
+ 'minimize': 'IloObjectiveSense.Minimize'}
+
+__objective_sense_glpk = {'maximize': True,
+ 'minimize': False}
+__objective_sense_glpk_java = {'maximize': 'GLPKConstants.GLP_MAX',
+ 'minimize': 'GLPKConstants.GLP_MIN'}
+__objective_sense_gurobi = {'maximize': -1,
+ 'minimize': 1}
+objective_senses = {'cplex': __objective_sense_cplex,
+ 'cplex_java': __objective_sense_cplex_java,
+ 'glpk': __objective_sense_glpk,
+ 'glpk_java': __objective_sense_glpk_java,
+ 'gurobi': __objective_sense_gurobi}
+default_objective_sense = 'maximize'
+#Mappings from solver-specific status values to cobra pie status values
+## __status_cplex = "{Cplex.solution.status.MIP_infeasible: 'infeasible', " +\
+## "Cplex.solution.status.MIP_optimal: 'optimal', " +\
+## "Cplex.solution.status.MIP_optimal_tolerance: 'optimal'," +\
+## "Cplex.solution.status.MIP_unbounded: 'unbounded', "+\
+## "Cplex.solution.status.infeasible: 'infeasible', " +\
+## "Cplex.solution.status.optimal: 'optimal', " +\
+## "Cplex.solution.status.optimal_tolerance: 'optimal', " +\
+## "Cplex.solution.status.unbounded: 'unbounded', }"
+__status_cplex = """{
+ 'MIP_infeasible': 'infeasible',
+ 'integer optimal solution': 'optimal',
+ 'MIP_optimal': 'optimal',
+ 'MIP_optimal_tolerance': 'optimal',
+ 'MIP_unbounded': 'unbounded',
+ 'infeasible': 'infeasible',
+ 'optimal': 'optimal',
+ 'optimal_tolerance': 'optimal',
+ 'unbounded': 'unbounded',
+ 'integer optimal, tolerance': 'optimal',
+ 'time limit exceeded': 'time_limit'
+}"""
+
+__status_glpk = """{
+ 'opt': 'optimal',
+ 'nofeas': 'infeasible',
+ 'unbnd': 'unbounded'
+}"""
+__status_glpk_java = "{GLPKConstants.GLP_OPT: 'optimal', GLPKConstants.GLP_FEAS: 'feasible', GLPKConstants.GLP_INFEAS: 'infeasible', GLPKConstants.GLP_NOFEAS: 'infeasible', GLPKConstants.GLP_UNBND: 'unbounded', GLPKConstants.GLP_UNDEF: 'undefined'}"
+__status_gurobi = "{GRB.OPTIMAL: 'optimal', GRB.INFEASIBLE: 'infeasible', GRB.UNBOUNDED: 'unbounded', GRB.TIME_LIMIT: 'time_limit'}"
+
+status_dict = {'cplex': __status_cplex,
+ 'glpk': __status_glpk,
+ 'glpk_java': __status_glpk_java,
+ 'gurobi': __status_gurobi}
+
+#Mappings from solver-specific variable kinds to cobra pie
+__kind_cplex = "{'continuous': Cplex.variables.type.continuous, 'integer': Cplex.variables.type.integer}"
+__kind_cplex_java = "{'continuous': IloNumVarType.Float, 'integer': IloNumVarType.Int}"
+__kind_glpk = "{'continuous': float, 'integer': int}"
+__kind_glpk_java = "{'binary': GLPKConstants.GLP_BV, 'continuous': GLPKConstants.GLP_CV, 'integer': GLPKConstants.GLP_IV}"
+__kind_gurobi = "{'continuous': GRB.CONTINUOUS, 'integer': GRB.INTEGER}"
+
+variable_kind_dict = {'cplex': __kind_cplex,
+ 'cplex_java': __kind_cplex_java,
+ 'glpk': __kind_glpk,
+ 'glpk_java': __kind_glpk_java,
+ 'gurobi': __kind_gurobi}
+
+#Mappings from solver-specific constraint senses to cobra pie
+sense_dict = {'cplex': "{'E': 'E', 'L': 'L', 'G': 'G'}",
+ 'glpk': "{'E': 'E', 'L': 'L', 'G': 'G'}",
+ 'gurobi': "{'E': GRB.EQUAL, 'L': GRB.LESS_EQUAL, 'G': GRB.GREATER_EQUAL}"}
+
+
+#Mappings from cobra pie parameters names to solver specific parameter names
+__mappings_cplex = {'lp_method': 'lpmethod',
+ 'lp_parallel': 'threads',
+ 'threads': 'threads',
+ 'objective_sense': 'objective_sense',
+ 'time_limit': 'timelimit',
+ 'iteration_limit': 'simplex.limits.iterations',
+ 'tolerance_barrier': 'barrier.convergetol',
+ 'tolerance_feasibility': 'simplex.tolerances.feasibility',
+ 'tolerance_markowitz': 'simplex.tolerances.markowitz',
+ 'tolerance_optimality': 'simplex.tolerances.optimality',
+ 'MIP_gap_abs': 'mip.tolerances.absmipgap',
+ 'MIP_gap': 'mip.tolerances.mipgap'}
+__mappings_cplex_java = {'lp_method': 'RootAlg',
+ 'lp_parallel': 'ParallelMode',
+ 'objective_sense': 'objective_sense',
+ 'time_limit': 'TiLim',
+ 'tolerance_barrier': 'BarEpComp',
+ 'tolerance_feasibility': 'EpRHS',
+ 'tolerance_markowitz': 'EpMrk',
+ 'tolerance_optimality': 'EpOpt'}
+__mappings_glpk = {}
+__mappings_glpk_java = {'objective_sense': 'objective_sense',
+ 'lp_method': 'meth',
+ 'output_verbosity': 'msg_lev',
+ 'tolerance_dual': 'tol_dj',
+ 'tolerance_integer': 'tol_int',
+ 'tolerance_optimality': 'tol_bnd'
+ }
+__mappings_gurobi = {'log_file': 'LogFile',
+ 'lp_method': 'Method',
+ 'threads': 'Threads',
+ 'objective_sense': 'ModelSense',
+ 'output_verbosity': 'OutputFlag',
+ 'quadratic_precision': 'Quad',
+ 'time_limit': 'TimeLimit',
+ 'tolerance_feasibility': 'FeasibilityTol',
+ 'tolerance_markowitz': 'MarkowitzTol',
+ 'tolerance_optimality': 'OptimalityTol',
+ 'iteration_limit': 'IterationLimit',
+ 'MIP_gap_abs': 'MIPGapAbs',
+ 'MIP_gap': 'MIPGap'}
+parameter_mappings = {'cplex': __mappings_cplex,
+ 'cplex_java': __mappings_cplex_java,
+ 'glpk': __mappings_glpk,
+ 'glpk_java': __mappings_glpk_java,
+ 'gurobi': __mappings_gurobi}
+
+
+#Default solver parameters
+__common_defaults = {'objective_sense': 'maximize',
+ 'tolerance_optimality': 1e-6, 'tolerance_feasibility': 1e-6,
+ 'tolerance_integer': 1e-9,
+ 'quadratic_component': None}
+
+
+
+__parameters_cplex = deepcopy(__common_defaults)
+__parameters_cplex.update({'lp_method': 1,
+ 'lp_parallel': 0,
+ 'tolerance_barrier': 1.e-8})
+__parameters_glpk = deepcopy(__common_defaults)
+__parameters_glpk.update({'lp_method': 1})
+__parameters_glpk_java = deepcopy(__common_defaults)
+__parameters_glpk_java.update({'lp_method': 1,
+ 'output_verbosity': 0,
+ 'tolerance_dual': 1e-8})
+__parameters_gurobi = deepcopy(__common_defaults)
+__parameters_gurobi.update({'output_verbosity': 0,
+ 'lp_method': 0,
+ 'log_file': '',
+ 'tolerance_barrier': 1e-8})
+
+
+parameter_defaults = {'cplex': __parameters_cplex,
+ 'glpk': __parameters_glpk,
+ 'glpk_java': __parameters_glpk_java,
+ 'gurobi': __parameters_gurobi}
diff --git a/cobra/solvers/wrappers.py b/cobra/solvers/wrappers.py
new file mode 100644
index 0000000..24e027d
--- /dev/null
+++ b/cobra/solvers/wrappers.py
@@ -0,0 +1,45 @@
+"""
+Wrappers for solvers with an object oriented interface. This creates
+functions to call the objects' functions.
+
+The create_problem and solve functions are not included because they
+are classmethods. They should be included by specifying
+create_problem = PROBLEM_CLASS.create_problem
+where PROBLEM_CLASS is the solver class (i.e. GLP, esolver, etc.)
+"""
+
+
+def set_objective_sense(lp, objective_sense="maximize"):
+ return lp.set_objective_sense(lp, objective_sense=objective_sense)
+
+
+def change_variable_bounds(lp, *args):
+ return lp.change_variable_bounds(*args)
+
+
+def change_variable_objective(lp, *args):
+ return lp.change_variable_objective(*args)
+
+
+def change_coefficient(lp, *args):
+ return lp.change_coefficient(*args)
+
+
+def set_parameter(lp, parameter_name, value):
+ return lp.change_parameter(parameter_name, value)
+
+
+def solve_problem(lp, **kwargs):
+ return lp.solve_problem(**kwargs)
+
+
+def get_status(lp):
+ return lp.get_status()
+
+
+def get_objective_value(lp):
+ return lp.get_objective_value()
+
+
+def format_solution(lp, cobra_model):
+ return lp.format_solution(cobra_model)
diff --git a/cobra/test/__init__.py b/cobra/test/__init__.py
new file mode 100644
index 0000000..e11c334
--- /dev/null
+++ b/cobra/test/__init__.py
@@ -0,0 +1,71 @@
+from __future__ import with_statement, absolute_import
+import sys
+available_tests = ['unit_tests', 'solvers', 'flux_analysis', 'io_tests']
+
+from os.path import abspath, join, split, sep
+
+cobra_directory = abspath(join(split(abspath(__file__))[0], ".."))
+cobra_location = abspath(join(cobra_directory, ".."))
+data_directory = join(split(abspath(__file__))[0], "data")
+if not data_directory.endswith(sep):
+ data_directory += sep
+
+salmonella_sbml = join(data_directory, "salmonella.xml")
+salmonella_fbc_sbml = join(data_directory, "salmonella_fbc.xml")
+salmonella_pickle = join(data_directory, "salmonella.pickle")
+ecoli_sbml = join(data_directory, "iJO1366.xml")
+ecoli_pickle = join(data_directory, "iJO1366.pickle")
+ecoli_mat = join(data_directory, "iJO1366.mat")
+ecoli_json = join(data_directory, "iJO1366.json")
+
+__test_pickles = {'Salmonella_enterica': salmonella_pickle,
+ 'Escherichia_coli': ecoli_pickle,
+ }
+__test_xml = {'Salmonella_enterica': salmonella_sbml,
+ 'Escherichia_coli': ecoli_sbml,
+ }
+del abspath, join, split, sep
+
+
+def create_test_model(test_pickle=salmonella_pickle):
+ """Returns a cobra model for testing. The default model is the up to date
+ version of the Salmonella enterica Typhimurium LT2 model published in
+ Thiele et al. 2011 BMC Sys Bio 5:8
+
+ test_pickle: The filename of a pickled cobra.Model
+ We currently provide Salmonella enterica Typhimurium and Escherichia coli
+ models whose paths are stored in cobra.test.salmonella_pickle and
+ cobra.test.ecoli_pickle, respectively. The ecoli model is a variant of the
+ model published in Orth et al. 2011 Mol Syst Biol 7:535
+
+ """
+ try:
+ from cPickle import load
+ except:
+ from pickle import load
+
+ if test_pickle == "salmonella":
+ test_pickle = salmonella_pickle
+ elif test_pickle == "ecoli":
+ test_pickle = ecoli_pickle
+ with open(test_pickle, "rb") as infile:
+ return load(infile)
+
+
+def create_test_suite():
+ """create a unittest.TestSuite with available tests"""
+ from unittest import TestLoader, TestSuite
+ loader = TestLoader()
+ suite = TestSuite()
+ for test_name in available_tests:
+ exec("from . import " + test_name)
+ suite.addTests(loader.loadTestsFromModule(eval(test_name)))
+ return suite
+
+suite = create_test_suite()
+
+
+def test_all():
+ """###running unit tests on cobra py###"""
+ from unittest import TextTestRunner
+ TextTestRunner(verbosity=2).run(create_test_suite())
diff --git a/cobra/test/data/iJO1366.json b/cobra/test/data/iJO1366.json
new file mode 100644
index 0000000..7c21d8a
--- /dev/null
+++ b/cobra/test/data/iJO1366.json
@@ -0,0 +1 @@
+{"reactions": [{"subsystem": "", "name": "Sink needed to allow p-Cresol to leave system", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {}, "metabolites": {"4crsol_c": -1.0}, "objective_coefficient": 0.0, "variable_kind": "continuous", "id": "DM_4CRSOL", "gene_reaction_rule": ""}, {"subsystem": "", "name": "Sink needed to allow 5'-deoxyribose to leave system", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {}, "metabolites": {"5drib_c": -1.0}, "objective_coefficient": 0.0, "va [...]
\ No newline at end of file
diff --git a/cobra/test/data/iJO1366.mat b/cobra/test/data/iJO1366.mat
new file mode 100644
index 0000000..aa88bf4
Binary files /dev/null and b/cobra/test/data/iJO1366.mat differ
diff --git a/cobra/test/data/iJO1366.pickle b/cobra/test/data/iJO1366.pickle
new file mode 100644
index 0000000..0178494
Binary files /dev/null and b/cobra/test/data/iJO1366.pickle differ
diff --git a/cobra/test/data/iJO1366.xml b/cobra/test/data/iJO1366.xml
new file mode 100644
index 0000000..066eb10
--- /dev/null
+++ b/cobra/test/data/iJO1366.xml
@@ -0,0 +1,85978 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
+ <model id="iJO1366">
+ <listOfUnitDefinitions>
+ <unitDefinition id="mmol_per_gDW_per_hr">
+ <listOfUnits>
+ <unit kind="mole" scale="-3"/>
+ <unit kind="gram" exponent="-1"/>
+ <unit kind="second" exponent="-1" multiplier="0.000277777777777778"/>
+ </listOfUnits>
+ </unitDefinition>
+ </listOfUnitDefinitions>
+ <listOfCompartments>
+ <compartment id="c" name="Cytoplasm"/>
+ <compartment id="e" name="Extracellular"/>
+ <compartment id="p" name="Periplasm"/>
+ </listOfCompartments>
+ <listOfSpecies>
+ <species id="M_10fthf_c" name="10-Formyltetrahydrofolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H21N7O7</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr120_c" name="1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H52O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr140_c" name="1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H60O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr141_c" name="1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H56O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr160_c" name="1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H68O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr161_c" name="1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H64O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr180_c" name="1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H76O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr181_c" name="1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H72O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12ppd_DASH_R_c" name="(R)-Propane-1,2-diol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12ppd_DASH_S_c" name="(S)-Propane-1,2-diol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O10P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_14dhncoa_c" name="1,4-dihydroxy-2-napthoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C32H38N7O19P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_14glucan_c" name="1,4-alpha-D-glucan" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_15dap_c" name="1,5-Diaminopentane" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1ddecg3p_c" name="1-dodecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H29O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1hdec9eg3p_c" name="1-hexadec-9-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1hdecg3p_c" name="1-hexadecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H37O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1odec11eg3p_c" name="1-octadec-11-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1odecg3p_c" name="1-octadecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H41O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1pyr5c_c" name="1-Pyrroline-5-carboxylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1tdec7eg3p_c" name="1-tetradec-7-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1tdecg3p_c" name="1-tetradecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H33O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dappa_c" name="2,3-diaminopropionate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23ddhb_c" name="2,3-Dihydro-2,3-dihydroxybenzoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dhacoa_c" name="2,3-dehydroadipyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H37N7O19P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dhb_c" name="2,3-Dihydroxybenzoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dhba_c" name="(2,3-Dihydroxybenzoyl)adenylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H17N5O10P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dhbzs_c" name="2,3-dihydroxybenzoylserine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dhdp_c" name="2,3-Dihydrodipicolinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5NO4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dhmb_c" name="(R)-2,3-Dihydroxy-3-methylbutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dhmp_c" name="(R)-2,3-Dihydroxy-3-methylpentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23doguln_c" name="2,3-Dioxo-L-gulonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_25aics_c" name="(S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H15N4O12P</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_25dkglcn_c" name="2,5-diketo-D-gluconate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_25drapp_c" name="2,5-Diamino-6-(ribosylamino)-4-(3H)-pyrimidinone 5'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H14N5O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_26dap_DASH_LL_c" name="LL-2,6-Diaminoheptanedioate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_26dap_DASH_M_c" name="meso-2,6-Diaminoheptanedioate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe120_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe140_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe141_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe160_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe161_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe180_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe181_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg120_c" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg140_c" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg141_c" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg160_c" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg161_c" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg180_c" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg181_c" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ahbut_c" name="(S)-2-Aceto-2-hydroxybutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2amsa_c" name="2-Aminomalonate semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2aobut_c" name="L-2-Amino-3-oxobutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2cpr5p_c" name="1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H13NO9P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dda7p_c" name="2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O10P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ddecg3p_c" name="2-dodecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H30O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ddg6p_c" name="2-Dehydro-3-deoxy-D-gluconate 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O9P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_c" name="2-Dehydro-3-deoxy-D-gluconate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dh3dgal_c" name="2-Dehydro-3-deoxy-D-galactonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dh3dgal6p_c" name="2-Dehydro-3-deoxy-D-galactonate 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O9P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dhguln_c" name="2-Dehydro-L-gulonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dhp_c" name="2-Dehydropantoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dmmq8_c" name="2-Demethylmenaquinone 8" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C50H70O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dmmql8_c" name="2-Demethylmenaquinol 8" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C50H72O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dr1p_c" name="2-Deoxy-D-ribose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2dr5p_c" name="2-Deoxy-D-ribose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2fe1s_c" name="[2Fe-1S] desulfurated iron-sulfur cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: SFe2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2fe2s_c" name="[2Fe-2S] iron-sulfur cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: S2Fe2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2h3oppan_c" name="2-Hydroxy-3-oxopropanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2hdec9eg3p_c" name="2-hexadec-9-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H36O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2hdecg3p_c" name="2-hexadecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ippm_c" name="2-Isopropylmaleate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2mahmp_c" name="2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2mcacn_c" name="cis-2-Methylaconitate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O6</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2mcit_c" name="2-Methylcitrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O7</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2me4p_c" name="2-C-methyl-D-erythritol 4-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2mecdp_c" name="2-C-methyl-D-erythritol 2,4-cyclodiphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O9P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2obut_c" name="2-Oxobutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2odec11eg3p_c" name="2-octadec-11-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H40O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2odecg3p_c" name="2-octadecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ohph_c" name="2-Octaprenyl-6-hydroxyphenol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C46H70O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ombzl_c" name="2-Octaprenyl-6-methoxy-1,4-benzoquinol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H72O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2omhmbl_c" name="2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H74O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ommbl_c" name="2-Octaprenyl-3-methyl-6-methoxy- 1,4-benzoquinol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H74O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2omph_c" name="2-Octaprenyl-6-methoxyphenol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H72O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2oph_c" name="2-Octaprenylphenol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C46H70O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2oxpaccoa_c" name="2-oxepin-2(3H)-ylideneacetyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H38N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2p4c2me_c" name="2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N3O17P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2pg_c" name="D-Glycerate 2-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2pglyc_c" name="2-Phosphoglycolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O6P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2sephchc_c" name="2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H13O9</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2shchc_c" name="2-Succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H10O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2tdec7eg3p_c" name="2-tetradec-7-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H32O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2tdecg3p_c" name="2-tetradecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H34O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2tpr3dpcoa_c" name="2'-(5''-triphosphoribosyl)-3'-dephospho-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C26H40N7O26P5S</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_34hpp_c" name="3-(4-Hydroxyphenyl)pyruvate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_35cgmp_c" name="3',5'-Cyclic GMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3amac_c" name="3-Aminoacrylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3c2hmp_c" name="3-Carboxy-2-hydroxy-4-methylpentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3c3hmp_c" name="3-Carboxy-3-hydroxy-4-methylpentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3c4mop_c" name="3-Carboxy-4-methyl-2-oxopentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3dhguln_c" name="3-Dehydro-L-gulonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3dhgulnp_c" name="3-keto-L-gulonate-6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3dhq_c" name="3-Dehydroquinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3dhsk_c" name="3-Dehydroshikimate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3fe4s_c" name="[3Fe-4S] damaged iron-sulfur cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: S4Fe3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3haACP_c" name="(3R)-3-Hydroxyacyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H27N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hadpcoa_c" name="(3S)-3-Hydroxyadipyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H39N7O20P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hbcoa_c" name="(S)-3-Hydroxybutanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H38N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hcddec5eACP_c" name="(R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_c" name="3-hydroxycinnamic acid" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hcmrs7eACP_c" name="(R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hcpalm9eACP_c" name="(R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hcvac11eACP_c" name="(R)-3-hydroxy-cis-vacc-11-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hdcoa_c" name="(S)-3-Hydroxydecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H50N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hddcoa_c" name="(S)-3-Hydroxydodecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H54N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hddecACP_c" name="(R)-3-Hydroxydodecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H43N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hdecACP_c" name="(R)-3-Hydroxydecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hhcoa_c" name="(S)-3-Hydroxyhexanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hhdcoa_c" name="(S)-3-Hydroxyhexadecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H62N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hhexACP_c" name="(R)-3-Hydroxyhexanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hmrsACP_c" name="(R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H47N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hocoa_c" name="(S)-3-Hydroxyoctanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H46N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hoctACP_c" name="(R)-3-Hydroxyoctanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hoctaACP_c" name="(R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H55N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hodcoa_c" name="(S)-3-Hydroxyoctadecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H66N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hpalmACP_c" name="R-3-hydroxypalmitoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hpp_c" name="3-Hydroxypropanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hpppn_c" name="3-(3-hydroxy-phenyl)propionate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3htdcoa_c" name="(S)-3-Hydroxytetradecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H58N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ig3p_c" name="C'-(3-Indolyl)-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3mob_c" name="3-Methyl-2-oxobutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3mop_c" name="(S)-3-Methyl-2-oxopentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ocddec5eACP_c" name="3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H39N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ocmrs7eACP_c" name="3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H43N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ocpalm9eACP_c" name="3-oxo-cis-palm-9-eoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H47N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ocvac11eACP_c" name="3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H51N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3odcoa_c" name="3-Oxodecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3oddcoa_c" name="3-Oxododecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H52N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3oddecACP_c" name="3-Oxododecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3odecACP_c" name="3-Oxodecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ohcoa_c" name="3-Oxohexanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H40N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ohdcoa_c" name="3-Oxohexadecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ohexACP_c" name="3-Oxohexanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3omrsACP_c" name="3-Oxotetradecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3oocoa_c" name="3-Oxooctanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ooctACP_c" name="3-Oxooctanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ooctdACP_c" name="3-Oxooctadecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3oodcoa_c" name="3-Oxooctadecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3opalmACP_c" name="3-Oxohexadecanoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ophb_c" name="3-Octaprenyl-4-hydroxybenzoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H69O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3otdcoa_c" name="3-Oxotetradecanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3oxdhscoa_c" name="3-oxo-5,6-dehydrosuberyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H39N7O20P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3php_c" name="3-Phosphohydroxypyruvate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O7P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3psme_c" name="5-O-(1-Carboxyvinyl)-3-phosphoshikimate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H9O10P</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3sala_c" name="3-Sulfino-L-alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5NO4S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4abut_c" name="4-Aminobutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4abutn_c" name="4-Aminobutanal" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H10NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4abz_c" name="4-Aminobenzoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4adcho_c" name="4-amino-4-deoxychorismate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4ahmmp_c" name="4-Amino-5-hydroxymethyl-2-methylpyrimidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4ampm_c" name="4-Amino-2-methyl-5-phosphomethylpyrimidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3O4P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4c2me_c" name="4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H23N3O14P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4crsol_c" name="p-Cresol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4fe4s_c" name="[4Fe-4S] iron-sulfur cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: S4Fe4</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4h2opntn_c" name="4-Hydroxy-2-oxopentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4hbz_c" name="4-Hydroxybenzoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4hthr_c" name="4-Hydroxy-L-threonine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4mhetz_c" name="4-Methyl-5-(2-hydroxyethyl)-thiazole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9NOS</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4mop_c" name="4-Methyl-2-oxopentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4mpetz_c" name="4-Methyl-5-(2-phosphoethyl)-thiazole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8NO4PS</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4pasp_c" name="4-Phospho-L-aspartate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4per_c" name="4-Phospho-D-erythronate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6O8P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4ppan_c" name="D-4'-Phosphopantothenate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15NO8P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4ppcys_c" name="N-((R)-4-Phosphopantothenoyl)-L-cysteine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H20N2O9PS</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4r5au_c" name="4-(1-D-Ribitylamino)-5-aminouracil" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16N4O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_56dura_c" name="5,6-dihydrouracil" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5aizc_c" name="5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O9P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5aop_c" name="5-Amino-4-oxopentanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5aprbu_c" name="5-Amino-6-(5'-phosphoribitylamino)uracil" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5apru_c" name="5-Amino-6-(5'-phosphoribosylamino)uracil" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5caiz_c" name="5-phosphoribosyl-5-carboxyaminoimidazole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O9P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5dglcn_c" name="5-Dehydro-D-gluconate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5dh4dglc_c" name="5-Dehydro-4-deoxy-D-glucarate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O7</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5drib_c" name="5'-deoxyribose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5fthf_c" name="5-Formyltetrahydrofolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H21N7O7</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5mta_c" name="5-Methylthioadenosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H15N5O3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5mthf_c" name="5-Methyltetrahydrofolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N7O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5mtr_c" name="5-Methylthio-D-ribose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O4S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5prdmbz_c" name="N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H17N2O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_6hmhpt_c" name="6-hydroxymethyl dihydropterin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9N5O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_6hmhptpp_c" name="6-hydroxymethyl-dihydropterin pyrophosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8N5O8P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_6pgc_c" name="6-Phospho-D-gluconate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O10P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_6pgl_c" name="6-phospho-D-glucono-1,5-lactone" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_8aonn_c" name="8-Amino-7-oxononanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H17NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ACP_c" name="acyl carrier protein" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H21N2O7PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDglu_c" name="L-alanine-D-glutamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_c" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_c" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaLglu_c" name="L-alanine-L-glutamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_N1aspmd_c" name="N1-Acetylspermidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H23N3O</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_Nmtrp_c" name="N-Methyltryptophan" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H14N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_Sfglutth_c" name="S-Formylglutathione" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16N3O7S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aacald_c" name="Aminoacetaldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aacoa_c" name="Acetoacetyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H36N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aact_c" name="Aminoacetone" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ac_c" name="Acetate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acACP_c" name="Acetyl-ACP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H23N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acac_c" name="Acetoacetate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acald_c" name="Acetaldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acanth_c" name="N-Acetylanthranilate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H8NO3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_accoa_c" name="Acetyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H34N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acetol_c" name="Acetol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acg5p_c" name="N-Acetyl-L-glutamyl 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9NO8P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acg5sa_c" name="N-Acetyl-L-glutamate 5-semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgam_c" name="N-Acetyl-D-glucosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgam1p_c" name="N-Acetyl-D-glucosamine 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgam6p_c" name="N-Acetyl-D-glucosamine 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acglc_DASH_D_c" name="6-Acetyl-D-glucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14O7</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acglu_c" name="N-Acetyl-L-glutamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9NO5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmalt_c" name="Acetyl-maltose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H24O12</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmana_c" name="N-Acetyl-D-mannosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmanap_c" name="N-Acetyl-D-mannosamine 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmum6p_c" name="N-acetylmuramate 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H17NO11P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acnam_c" name="N-Acetylneuraminate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acon_DASH_C_c" name="cis-Aconitate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acon_DASH_T_c" name="trans-Aconitate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aconm_c" name="E-3-carboxy-2-pentenedioate 6-methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acorn_c" name="N2-Acetyl-L-ornithine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acser_c" name="O-Acetyl-L-serine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_actACP_c" name="Acetoacetyl-ACP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N2O9PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_actp_c" name="Acetyl phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O5P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ade_c" name="Adenine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adn_c" name="Adenosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adocbi_c" name="Adenosyl cobinamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C58H84CoN16O11</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adocbip_c" name="Adenosyl cobinamide phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C58H83CoN16O14P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adocbl_c" name="Adenosylcobalamin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adp_c" name="ADP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adpglc_c" name="ADPglucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adphep_DASH_DD_c" name="ADP-D-glycero-D-manno-heptose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N5O16P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adphep_DASH_LD_c" name="ADP-L-glycero-D-manno-heptose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N5O16P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adprib_c" name="ADPribose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O14P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ag_c" name="silver" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ag</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_agdpcbi_c" name="Adenosine-GDP-cobinamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H95CoN21O21P2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_agm_c" name="Agmatine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ahcys_c" name="S-Adenosyl-L-homocysteine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H20N6O5S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ahdt_c" name="2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N5O13P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aicar_c" name="5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N4O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_air_c" name="5-amino-1-(5-phospho-D-ribosyl)imidazole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N3O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_akg_c" name="2-Oxoglutarate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_B_c" name="beta-Alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_D_c" name="D-Alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_L_c" name="L-Alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alaala_c" name="D-Alanyl-D-alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alac_DASH_S_c" name="(S)-2-Acetolactate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alatrna_c" name="L-Alanyl-tRNA(Ala)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_all_DASH_D_c" name="D-Allose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_all6p_c" name="D-Allose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alltn_c" name="Allantoin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alltt_c" name="Allantoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7N4O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_allul6p_c" name="Allulose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_altrn_c" name="D-Altronate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_amet_c" name="S-Adenosyl-L-methionine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H23N6O5S</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ametam_c" name="S-Adenosylmethioninamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H24N6O3S</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_amob_c" name="S-Adenosyl-4-methylthio-2-oxobutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O6S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_amp_c" name="AMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhgm_c" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhgm3p_c" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H52N6O19</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhgm4p_c" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H57N7O20</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhm_c" name="1,6-anhydrous-N-Acetylmuramate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16NO7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhm3p_c" name="1,6-anhydrous-N-Acetylmuramyl-tripeptide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C26H39N5O14</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhm4p_c" name="1,6-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N6O15</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anth_c" name="Anthranilate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ap4a_c" name="P1,P4-Bis(5'-adenosyl) tetraphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N10O19P4</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ap5a_c" name="P1,P5-Bis(5'-adenosyl) pentaphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N10O22P5</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apg120_c" name="acyl phosphatidylglycerol (n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H80O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apg140_c" name="acyl phosphatidylglycerol (n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H92O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apg141_c" name="acyl phosphatidylglycerol (n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H86O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apg160_c" name="acyl phosphatidylglycerol (n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C54H104O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apg161_c" name="acyl phosphatidylglycerol (n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C54H98O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apg180_c" name="acyl phosphatidylglycerol (n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H116O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apg181_c" name="acyl phosphatidylglycerol (n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H110O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_apoACP_c" name="apoprotein [acyl carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: RHO</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_appl_c" name="1-Aminopropan-2-ol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aps_c" name="Adenosine 5'-phosphosulfate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10PS</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ara5p_c" name="D-Arabinose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arab_DASH_L_c" name="L-Arabinose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aragund_c" name="O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H115N1O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbt6p_c" name="Arbutin 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H15O10P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbtn_c" name="aerobactin minus Fe3" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbtn_DASH_fe3_c" name="Aerobactin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arg_DASH_L_c" name="L-Arginine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_argsuc_c" name="N(omega)-(L-Arginino)succinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N4O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_argtrna_c" name="L-Arginyl-tRNA(Arg)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14N4OR</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ascb6p_c" name="L-ascorbate-6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asn_DASH_L_c" name="L-Asparagine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asntrna_c" name="L-Asparaginyl-tRNA(Asn)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H24N2O12PR2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aso3_c" name="arsenite" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aso4_c" name="arsenate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO4</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asp_DASH_L_c" name="L-Aspartate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aspsa_c" name="L-Aspartate 4-semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asptrna_c" name="L-Aspartyl-tRNA(Asp)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5NO3R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_athr_DASH_L_c" name="L-Allo-threonine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_athtp_c" name="adenosine thiamine triphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H28N9O13P3S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_atp_c" name="ATP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O13P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_b2coa_c" name="Crotonoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H36N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bbtcoa_c" name="gamma-butyrobetainyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O17P3S</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_betald_c" name="Betaine aldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H12NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bglycogen_c" name="branching glycogen" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bmoco_c" name="bis-molybdenum cofactor" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H20N10O13P2S4Mo</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bmoco1gdp_c" name="bis-molybdopterin mono-guanine dinucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H32N15O20P3S4Mo</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bmocogdp_c" name="bis-molybdopterin guanine dinucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H44N20O27P4S4Mo</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_btal_c" name="Butanal" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_btcoa_c" name="Butanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H38N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_btn_c" name="Biotin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_btnso_c" name="d-biotin d-sulfoxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O4S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_but_c" name="Butyrate (n-C4:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_but2eACP_c" name="But-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_butACP_c" name="Butyryl-ACP (n-C4:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H27N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_butso3_c" name="butanesulfonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bwco_c" name="tungsten bispterin cofactor" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H20N10O13P2S4W</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bwco1gdp_c" name="tungsten bispterin cofactor mono-guanine dinucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H32N15O20P3S4W</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_bwcogdp_c" name="tungsten bispterin cofactor guanine dinucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H44N20O27P4S4W</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ca2_c" name="Calcium" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_camp_c" name="cAMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbasp_c" name="N-Carbamoyl-L-aspartate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbi_c" name="Cobinamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbl1_c" name="Cob(I)alamin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbm_c" name="Carbamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbp_c" name="Carbamoyl phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2NO5P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cd2_c" name="Cadmium" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cddec5eACP_c" name="cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdec3eACP_c" name="cis-dec-3-enoyl-[acyl-carrier protein] (n-C10:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdg_c" name="7-deaza-7-carboxyguanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5N4O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdp_c" name="CDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O11P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdpdddecg_c" name="CDP-1,2-didodecanoylglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H63N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdpdhdec9eg_c" name="CDP-1,2-dihexadec-9-enoylglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H75N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdpdhdecg_c" name="CDP-1,2-dihexadecanoylglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H79N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdpdodec11eg_c" name="CDP-1,2-dioctadec-11-enoylglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H83N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdpdodecg_c" name="CDP-1,2-dioctadecanoylglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H87N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdpdtdec7eg_c" name="CDP-1,2-ditetradec-7-enoylglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H67N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cdpdtdecg_c" name="CDP-1,2-ditetradecanoylglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H71N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cechddd_c" name="cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cenchddd_c" name="cis-3-(3-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cgly_c" name="Cys-Gly" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_chol_c" name="Choline" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_chor_c" name="chorismate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_chtbs6p_c" name="diacetylchitobiose-6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H27N2O14P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cinnm_c" name="trans-Cinnamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cit_c" name="Citrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_citr_DASH_L_c" name="L-Citrulline" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13N3O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ckdo_c" name="CMP-3-deoxy-D-manno-octulosonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H24N3O15P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cl_c" name="Chloride" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cmp_c" name="CMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_co2_c" name="CO2" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_coa_c" name="Coenzyme A" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H32N7O16P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cobalt2_c" name="Co2+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_colipa_c" name="core oligosaccharide lipid A" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpe160_c" name="cyclopropane phosphatidylethanolamine (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H74N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpe180_c" name="cyclopropane phosphatidylethanolamine (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H82N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpg160_c" name="cyclopropane phosphatidylglycerol (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H74O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpg180_c" name="cyclopropane phosphatidylglycerol (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H82O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpgn_c" name="coprogen" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpgn_DASH_un_c" name="coprogen unloaded (no Fe(III))" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cph4_c" name="6-carboxy-5,6,7,8-tetrahydropterin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8N5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpmp_c" name="cyclic pyranopterin monophosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpppg3_c" name="Coproporphyrinogen III" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H40N4O8</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crn_c" name="L-Carnitine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crn_DASH_D_c" name="D-Carnitine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crnDcoa_c" name="D-carnitinyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O18P3S</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crncoa_c" name="L-Carnitinyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O18P3S</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_csn_c" name="Cytosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ctbt_c" name="crotonobetaine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ctbtcoa_c" name="crotonobetainyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H44N8O17P3S</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ctp_c" name="CTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O14P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cu_c" name="Cu+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cu2_c" name="Cu2+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cyan_c" name="Hydrogen cyanide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cynt_c" name="Cyanate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cys_DASH_D_c" name="D-Cysteine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cys_DASH_L_c" name="L-Cysteine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cyst_DASH_L_c" name="L-Cystathionine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cystrna_c" name="L-Cysteinyl-tRNA(Cys)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOSR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cytd_c" name="Cytidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dad_DASH_2_c" name="Deoxyadenosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dad_DASH_5_c" name="5'-Deoxyadenosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dadp_c" name="dADP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O9P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_damp_c" name="dAMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dann_c" name="7,8-Diaminononanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H21N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_datp_c" name="dATP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O12P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_db4p_c" name="3,4-dihydroxy-2-butanone 4-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dc2coa_c" name="trans-Dec-2-enoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dca_c" name="Decanoate (n-C10:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcaACP_c" name="Decanoyl-ACP (n-C10:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcacoa_c" name="Decanoyl-CoA (n-C10:0CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H50N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcamp_c" name="N6-(1,2-Dicarboxyethyl)-AMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H14N5O11P</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcdp_c" name="dCDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O10P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcmp_c" name="dCMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dctp_c" name="dCTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O13P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcyt_c" name="Deoxycytidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dd2coa_c" name="trans-Dodec-2-enoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H52N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ddca_c" name="Dodecanoate (n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ddcaACP_c" name="Dodecanoyl-ACP (n-C12:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H43N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ddcacoa_c" name="Dodecanoyl-CoA (n-C12:0CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H54N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ddcap_c" name="Dodecanoly-phosphate (n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H24O5P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgdp_c" name="dGDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgmp_c" name="dGMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgslnt_c" name="Selenodiglutathione" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2Se</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgsn_c" name="Deoxyguanosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgtp_c" name="dGTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O13P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dha_c" name="Dihydroxyacetone" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhap_c" name="Dihydroxyacetone phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhcinnm_c" name="2,3-dihydroxicinnamic acid" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhf_c" name="7,8-Dihydrofolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H19N7O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhgly_c" name="dehydroglycine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhmpt_c" name="Dihydromonapterin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhmptp_c" name="dihydromonapterin-triphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N5O13P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhna_c" name="1,4-Dihydroxy-2-naphthoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H7O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhnpt_c" name="Dihydroneopterin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhor_DASH_S_c" name="(S)-Dihydroorotate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N2O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhpmp_c" name="Dihydroneopterin monophosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhpppn_c" name="3-(2,3-Dihydroxyphenyl)propanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhpt_c" name="Dihydropteroate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H13N6O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhptd_c" name="4,5-dihydroxy-2,3-pentanedione" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dhptdn_c" name="6,7-Dihydropteridine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6N4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_didp_c" name="dIDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O10P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dimp_c" name="dIMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_din_c" name="Deoxyinosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ditp_c" name="dITP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O13P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dmbzid_c" name="5,6-Dimethylbenzimidazole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dmlz_c" name="6,7-Dimethyl-8-(1-D-ribityl)lumazine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H18N4O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dmpp_c" name="Dimethylallyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dms_c" name="Dimethyl sulfide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dmso_c" name="Dimethyl sulfoxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dnad_c" name="Deamino-NAD+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H24N6O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dpcoa_c" name="Dephospho-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H33N7O13P2S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbdox_c" name="fused thiol:disulfide interchange protein (oxidized)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbdrd_c" name="fused thiol:disulfide interchange protein (reduced)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dscl_c" name="dihydrosirohydrochlorin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H41N4O16</p>
+ <p>CHARGE: -7</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtbt_c" name="Dethiobiotin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N2O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtdp_c" name="dTDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O11P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtdp4aaddg_c" name="dTDP-4-acetamido-4,6-dideoxy-D-galactose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H27N3O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtdp4addg_c" name="dTDP-4-amino-4,6-dideoxy-D-galactose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H26N3O14P2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtdp4d6dg_c" name="dTDP-4-dehydro-6-deoxy-D-glucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H22N2O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtdp4d6dm_c" name="dTDP-4-dehydro-6-deoxy-L-mannose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H22N2O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtdpglu_c" name="dTDPglucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H24N2O16P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtdprmn_c" name="dTDP-L-rhamnose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H24N2O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtmp_c" name="dTMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dttp_c" name="dTTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O14P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dudp_c" name="dUDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O11P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dump_c" name="dUMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_duri_c" name="Deoxyuridine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dutp_c" name="dUTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O14P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dxyl_c" name="1-deoxy-D-xylulose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dxyl5p_c" name="1-deoxy-D-xylulose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_e4p_c" name="D-Erythrose 4-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_egmeACP_c" name="Enoylglutaryl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H27N2O10PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_eig3p_c" name="D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N2O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_enter_c" name="Enterochelin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_epmeACP_c" name="Enoylpimeloyl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H31N2O10PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_etha_c" name="Ethanolamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ethso3_c" name="ethanesulfonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_etoh_c" name="Ethanol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_f1p_c" name="D-Fructose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_f6p_c" name="D-Fructose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fad_c" name="Flavin adenine dinucleotide oxidized" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H31N9O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fadh2_c" name="Flavin adenine dinucleotide reduced" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H33N9O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fald_c" name="Formaldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fc1p_c" name="L-Fuculose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fcl_DASH_L_c" name="L-fuculose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O12P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe2_c" name="Fe2+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3_c" name="Fe3+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_c" name="ferric 2,3-dihydroxybenzoylserine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3hox_c" name="Fe(III)hydroxamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3hox_DASH_un_c" name="Fe(III)hydoxamate, unloaded" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fecrm_c" name="Ferrichrome" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fecrm_DASH_un_c" name="Ferrichrome minus Fe(III)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feenter_c" name="Fe-enterobactin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feoxam_c" name="ferroxamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feoxam_DASH_un_c" name="ferroxamine minus Fe(3)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fgam_c" name="N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_flxr_c" name="Flavodoxin reduced" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_flxso_c" name="flavodoxin semi oxidized" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fmettrna_c" name="N-Formylmethionyl-tRNA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9NO2SR</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fmn_c" name="FMN" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H19N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fmnh2_c" name="Reduced FMN" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H21N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_for_c" name="Formate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_forcoa_c" name="Formyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H32N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fpram_c" name="2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15N3O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fprica_c" name="5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_frdp_c" name="Farnesyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fru_c" name="D-Fructose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_frulys_c" name="fructoselysine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_frulysp_c" name="fructoselysine Phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H24N2O10P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fruur_c" name="D-Fructuronate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fuc_DASH_L_c" name="L-Fucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fum_c" name="Fumarate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g1p_c" name="D-Glucose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3p_c" name="Glyceraldehyde 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pc_c" name="sn-Glycero-3-phosphocholine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pe_c" name="sn-Glycero-3-phosphoethanolamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pg_c" name="Glycerophosphoglycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pi_c" name="sn-Glycero-3-phospho-1-inositol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3ps_c" name="Glycerophosphoserine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g6p_c" name="D-Glucose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gagicolipa_c" name="galactosyl-glucosyl-inner core oligosaccharide lipid A" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C157H271N2O84P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal_c" name="D-Galactose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal1p_c" name="alpha-D-Galactose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galct_DASH_D_c" name="D-Galactarate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galctn_DASH_D_c" name="D-Galactonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galctn_DASH_L_c" name="L-Galactonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galt1p_c" name="Galactitol 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galur_c" name="D-Galacturonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gam1p_c" name="D-Glucosamine 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gam6p_c" name="D-Glucosamine 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gar_c" name="N1-(5-Phospho-D-ribosyl)glycinamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_garagund_c" name="glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C77H125N1O22P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gbbtn_c" name="gamma-butyrobetaine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gcald_c" name="Glycolaldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdp_c" name="GDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdpddman_c" name="GDP-4-dehydro-6-deoxy-D-mannose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N5O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdpfuc_c" name="GDP-L-fucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdpmann_c" name="GDP-D-mannose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O16P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdpofuc_c" name="GDP-4-oxo-L-fucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N5O15P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdptp_c" name="Guanosine 3'-diphosphate 5'-triphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O20P5</p>
+ <p>CHARGE: -7</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gfgaragund_c" name="galactofuranosyl-glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C83H135N1O27P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gg4abut_c" name="gamma-glutamyl-gamma aminobutyric acid" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O5N2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ggagicolipa_c" name="glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C163H281N2O89P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ggbutal_c" name="gamma-glutamyl-gamma-butyraldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16O4N2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gggagicolipa_c" name="glucosyl-glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C169H291N2O94P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ggptrc_c" name="gamma-glutamyl-putrescine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H20O3N3</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ghb_c" name="gamma-hydroxybutyrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gicolipa_c" name="glucosyl-inner core oligosaccharide lipid A" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H261N2O79P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glc_DASH_D_c" name="D-Glucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcn_c" name="D-Gluconate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcr_c" name="D-Glucarate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcur_c" name="D-Glucuronate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gln_DASH_L_c" name="L-Glutamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glntrna_c" name="L-Glutaminyl-tRNA(Gln)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9N2O2R</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glu_DASH_D_c" name="D-Glutamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glu_DASH_L_c" name="L-Glutamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glu1sa_c" name="L-Glutamate 1-semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glu5p_c" name="L-Glutamate 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glu5sa_c" name="L-Glutamate 5-semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glucys_c" name="gamma-L-Glutamyl-L-cysteine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glutrna_c" name="L-Glutamyl-tRNA(Glu)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7NO3R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glx_c" name="Glyoxylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H1O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gly_c" name="Glycine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyald_c" name="D-Glyceraldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyb_c" name="Glycine betaine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc_c" name="Glycerol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc_DASH_R_c" name="(R)-Glycerate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc2p_c" name="Glycerol 2-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc3p_c" name="Glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyclt_c" name="Glycolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glycogen_c" name="glycogen" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glytrna_c" name="Glycyl-tRNA(Gly)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4NOR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gmeACP_c" name="Glutaryl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O10PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gmhep17bp_c" name="D-Glycero-D-manno-heptose 1,7-bisphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12O13P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gmhep1p_c" name="D-Glycero-D-manno-heptose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gmhep7p_c" name="D-Glycero-D-manno-heptose 7-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gmp_c" name="GMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gp4g_c" name="P1,P4-Bis(5'-guanosyl) tetraphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N10O21P4</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_grdp_c" name="Geranyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_grxox_c" name="glutaredoxin (oxidized)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_grxrd_c" name="glutaredoxin (reduced)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gslnt_c" name="Glutathiolselenolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6SSe</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gsn_c" name="Guanosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gthox_c" name="Oxidized glutathione" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gthrd_c" name="Reduced glutathione" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gtp_c" name="GTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gtspmd_c" name="Glutathionylspermidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36N6O5S</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gua_c" name="Guanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h_c" name="H+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2_c" name="H2" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2mb4p_c" name="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2o_c" name="H2O" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2o2_c" name="Hydrogen peroxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2s_c" name="Hydrogen sulfide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hco3_c" name="Bicarbonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHO3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hcys_DASH_L_c" name="L-Homocysteine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdca_c" name="Hexadecanoate (n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdcap_c" name="Hexadecanoyl-phosphate (n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H32O5P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdcea_c" name="Hexadecenoate (n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdceap_c" name="Hexadecanoyl-phosphate (n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H30O5P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdcoa_c" name="Hexadecenoyl-CoA (n-C16:1CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdd2coa_c" name="trans-Hexadec-2-enoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdeACP_c" name="cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hemeO_c" name="Heme O" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H56FeN4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hexACP_c" name="Hexanoyl-ACP (n-C6:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hg2_c" name="Hg2+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hgmeACP_c" name="3-Hydroxyglutaryl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O11PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hhlipa_c" name="heptosyl-heptosyl-kdo2-lipidA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C124H220N2O51P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_his_DASH_L_c" name="L-Histidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hisp_c" name="L-Histidinol phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11N3O4P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_histd_c" name="L-Histidinol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N3O</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_histrna_c" name="L-Histidyl-tRNA(His)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3OR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hkndd_c" name="2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H8O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hkntd_c" name="2-hydroxy-6-ketononatrienedioate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H6O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hlipa_c" name="heptosyl-kdo2-lipidA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C117H208N2O45P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hmbil_c" name="Hydroxymethylbilane" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H38N4O17</p>
+ <p>CHARGE: -8</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hmgth_c" name="hydroxymethylglutathione" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18N3O7S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hom_DASH_L_c" name="L-Homoserine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hphhlipa_c" name="heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C131H231N2O60P3</p>
+ <p>CHARGE: -8</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hpmeACP_c" name="3-Hydroxypimeloyl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O11PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hpyr_c" name="Hydroxypyruvate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hqn_c" name="Hydroquinone" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hx2coa_c" name="trans-Hex-2-enoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H40N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hxa_c" name="Hexanoate (n-C6:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hxan_c" name="Hypoxanthine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hxcoa_c" name="Hexanoyl-CoA (n-C6:0CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iasp_c" name="Iminoaspartate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H3NO4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ichor_c" name="Isochorismate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_icit_c" name="Isocitrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_icolipa_c" name="inner core oligosaccharide lipid A (E coli)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C145H251N2O74P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_idon_DASH_L_c" name="L-Idonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_idp_c" name="IDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O11P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ile_DASH_L_c" name="L-Isoleucine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iletrna_c" name="L-Isoleucyl-tRNA(Ile)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12NOR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_imacp_c" name="3-(Imidazol-4-yl)-2-oxopropyl phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7N2O5P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_imp_c" name="IMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_indole_c" name="Indole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_inost_c" name="myo-Inositol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ins_c" name="Inosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ipdp_c" name="Isopentenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iscs_c" name="IscS sulfur acceptor protein" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HSR</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iscssh_c" name="IscS with bound sulfur" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HS2R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iscu_c" name="IscU scaffold protein" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H8O2S6R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iscu_DASH_2fe2s_c" name="IscU with bound [2Fe-2S] cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4O2S8Fe2R</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iscu_DASH_2fe2s2_c" name="IscU with two bound [2Fe-2S] clusters" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S10Fe4R</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_iscu_DASH_4fe4s_c" name="IscU with bound [4Fe-4S] cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4O2S10Fe4R</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_isetac_c" name="Isethionic acid" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_itp_c" name="ITP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O14P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_k_c" name="potassium" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdo_c" name="3-Deoxy-D-manno-2-octulosonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13O8</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_c" name="KDO(2)-lipid IV(A)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4L_c" name="KDO(2)-lipid IV(A) with laurate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C96H170N2O38P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4p_c" name="KDO(2)-lipid IV(A) with palmitoleoyl" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C100H176N2O38P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdo8p_c" name="3-Deoxy-D-manno-octulosonate 8-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12O11P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdolipid4_c" name="KDO-lipid IV(A)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C76H137N2O30P2</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kphphhlipa_c" name="kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C139H241N2O70P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lac_DASH_D_c" name="D-Lactate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lac_DASH_L_c" name="L-Lactate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lald_DASH_D_c" name="D-Lactaldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lald_DASH_L_c" name="L-Lactaldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lcts_c" name="Lactose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_leu_DASH_L_c" name="L-Leucine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_leutrna_c" name="L-Leucyl-tRNA(Leu)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12NOR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lgt_DASH_S_c" name="(R)-S-Lactoylglutathione" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H20N3O8S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipa_c" name="KDO(2)-lipid (A)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipa_cold_c" name="cold adapted KDO(2)-lipid (A)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipidA_c" name="2,3,2'3'-Tetrakis(beta-hydroxymyristoyl)-D-glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H126N2O23P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipidAds_c" name="Lipid A Disaccharide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H127N2O20P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipidX_c" name="2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H64NO12P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipoamp_c" name="lipoyl-AMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H25N5O8PS2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipoate_c" name="Lipoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14O2S2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipopb_c" name="lipoate (protein bound)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13OS2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lys_DASH_L_c" name="L-Lysine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lystrna_c" name="L-Lysine-tRNA (Lys)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14N2OR</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lyx_DASH_L_c" name="L-Lyxose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mal_DASH_D_c" name="D-Malate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mal_DASH_L_c" name="L-Malate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malACP_c" name="Malonyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N2O10PRS</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malcoa_c" name="Malonyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H33N7O19P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malcoame_c" name="malonyl-CoA methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H36N7O19P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malt_c" name="Maltose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malt6p_c" name="Maltose 6'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H21O14P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malthp_c" name="Maltoheptaose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H72O36</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malthx_c" name="Maltohexaose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_maltpt_c" name="Maltopentaose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malttr_c" name="Maltotriose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_maltttr_c" name="Maltotetraose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man_c" name="D-Mannose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man1p_c" name="D-Mannose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man6p_c" name="D-Mannose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man6pglyc_c" name="2(alpha-D-Mannosyl-6-phosphate)-D-glycerate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H14O12P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mana_c" name="D-Mannonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mdhdhf_c" name="(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_melib_c" name="Melibiose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_meoh_c" name="Methanol" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4O1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mercppyr_c" name="Mercaptopyruvate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_met_DASH_D_c" name="D-Methionine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_met_DASH_L_c" name="L-Methionine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_methf_c" name="5,10-Methenyltetrahydrofolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H20N7O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_metsox_DASH_R_DASH_L_c" name="L-methionine-R-sulfoxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_metsox_DASH_S_DASH_L_c" name="L-Methionine Sulfoxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mettrna_c" name="L-Methionyl-tRNA (Met)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NOSR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mg2_c" name="magnesium" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mi1p_DASH_D_c" name="1D-myo-Inositol 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_micit_c" name="methylisocitrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O7</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mlthf_c" name="5,10-Methylenetetrahydrofolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H21N7O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mmcoa_DASH_S_c" name="(S)-Methylmalonyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mmet_c" name="S-Methyl-L-methionine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mn2_c" name="Mn2+" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mnl1p_c" name="D-Mannitol 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_moadamp_c" name="MoaD Protein with bound AMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N5O8P1X</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_moadcoo_c" name="MoaD Protein with carboxylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C1O2X</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_moadcosh_c" name="MoaD Protein with thiocarboxylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C1H1O1S1X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mobd_c" name="Molybdate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: MoO4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_moco_c" name="molybdenum cofactor" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10N5O8PS2Mo</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mococdp_c" name="molybdopterin cytosine dinucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H22N8O15P2S2Mo</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mocogdp_c" name="molybdopterin guanine dinucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H22N10O15P2S2Mo</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mpt_c" name="molybdopterin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10N5O6PS2Cu</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mptamp_c" name="adenylated molybdopterin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H22N10O12P2S2Cu</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mql8_c" name="Menaquinol 8" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C51H74O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mqn8_c" name="Menaquinone 8" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C51H72O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_msa_c" name="Malonate semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mso3_c" name="methanesulfonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mthgxl_c" name="Methylglyoxal" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mththf_c" name="(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_myrsACP_c" name="Myristoyl-ACP (n-C14:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H47N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_n2o_c" name="Nitrous oxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_n8aspmd_c" name="N8-Acetylspermidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H23N3O</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_na1_c" name="Sodium" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_na15dap_c" name="N-3-aminopropyl-1,5-diaminopentane" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H24N3</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nac_c" name="Nicotinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nad_c" name="Nicotinamide adenine dinucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H26N7O14P2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H27N7O14P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nadp_c" name="Nicotinamide adenine dinucleotide phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H25N7O17P3</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nadph_c" name="Nicotinamide adenine dinucleotide phosphate - reduced" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H26N7O17P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ncam_c" name="Nicotinamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6N2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nh4_c" name="Ammonium" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ni2_c" name="nickel" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nicrnt_c" name="Nicotinate D-ribonucleotide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nmn_c" name="NMN" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no_c" name="Nitric oxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no2_c" name="Nitrite" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no3_c" name="Nitrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o16aund_c" name="O16 antigen undecaprenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C89H145N1O32P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o2_c" name="O2" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o2s_c" name="Superoxide anion" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_oaa_c" name="Oxaloacetate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_oc2coa_c" name="trans-Oct-2-enoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocACP_c" name="Octanoyl-ACP (n-C8:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_occoa_c" name="Octanoyl-CoA (n-C8:0CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H46N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdca_c" name="octadecanoate (n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdcaACP_c" name="Octadecanoyl-ACP (n-C18:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H55N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdcap_c" name="Octadecanoyl-phosphate (n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O5P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdcea_c" name="octadecenoate (n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdceap_c" name="Octadecanoyl-phosphate (n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H34O5P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_octa_c" name="octanoate (n-C8:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_octapb_c" name="octanoate (protein bound)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_octdp_c" name="all-trans-Octaprenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H65O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_octeACP_c" name="cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_od2coa_c" name="trans-Octadec-2-enoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_odecoa_c" name="Octadecenoyl-CoA (n-C18:1CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ogmeACP_c" name="3-Oxo-glutaryl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H27N2O11PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ohpb_c" name="2-Oxo-3-hydroxy-4-phosphobutanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O8P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_op4en_c" name="2-Oxopent-4-enoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_opmeACP_c" name="3-Oxo-pimeloyl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H31N2O11PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_orn_c" name="Ornithine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_orot_c" name="Orotate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_orot5p_c" name="Orotidine 5'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10N2O11P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_oxa_c" name="Oxalate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_oxadpcoa_c" name="3-Oxoadipyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H37N7O20P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_oxalcoa_c" name="Oxalyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H31N7O19P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_oxam_c" name="Oxamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2NO3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_oxur_c" name="Oxalureate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3N2O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa120_c" name="1,2-didodecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa140_c" name="1,2-ditetradecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H59O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa141_c" name="1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H55O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa160_c" name="1,2-dihexadecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H67O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa161_c" name="1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H63O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa180_c" name="1,2-dioctadecanoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H75O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa181_c" name="1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H71O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pac_c" name="Phenylacetic acid" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pacald_c" name="Phenylacetaldehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_palmACP_c" name="Palmitoyl-ACP (n-C16:0ACP)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pan4p_c" name="Pantetheine 4'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H21N2O7PS</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pant_DASH_R_c" name="(R)-Pantoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pap_c" name="Adenosine 3',5'-bisphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O10P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_paps_c" name="3'-Phosphoadenylyl sulfate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O13P2S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pdx5p_c" name="Pyridoxine 5'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H10NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe120_c" name="phosphatidylethanolamine (didodecanoyl, n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H58N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe140_c" name="phosphatidylethanolamine (ditetradecanoyl, n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H66N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe141_c" name="phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H62N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe160_c" name="phosphatidylethanolamine (dihexadecanoyl, n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H74N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe161_c" name="phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H70N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe180_c" name="phosphatidylethanolamine (dioctadecanoyl, n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H82N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe181_c" name="phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H78N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg120_c" name="Phosphatidylglycerol (didodecanoyl, n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H58O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg140_c" name="Phosphatidylglycerol (ditetradecanoyl, n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H66O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg141_c" name="Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H62O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg160_c" name="Phosphatidylglycerol (dihexadecanoyl, n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H74O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg161_c" name="Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H70O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg180_c" name="Phosphatidylglycerol (dioctadecanoyl, n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H82O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg181_c" name="Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H78O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp120_c" name="Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp140_c" name="Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp141_c" name="Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp160_c" name="Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp161_c" name="Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp180_c" name="Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp181_c" name="Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phaccoa_c" name="Phenylacetyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H38N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phe_DASH_L_c" name="L-Phenylalanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pheme_c" name="Protoheme" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phetrna_c" name="L-Phenylalanyl-tRNA(Phe)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NOR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phhlipa_c" name="phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C124H219N2O54P3</p>
+ <p>CHARGE: -8</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phom_c" name="O-Phospho-L-homoserine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phphhlipa_c" name="phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C131H230N2O63P4</p>
+ <p>CHARGE: -10</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phpyr_c" name="Phenylpyruvate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phthr_c" name="O-Phospho-4-hydroxy-L-threonine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pi_c" name="Phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pimACP_c" name="Pimeloyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H31N2O10PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pmeACP_c" name="Pimeloyl-[acyl-carrier protein] methyl ester" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O10PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pmtcoa_c" name="Palmitoyl-CoA (n-C16:0CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H62N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pnto_DASH_R_c" name="(R)-Pantothenate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_poaac_c" name="Peroxyaminoacrylate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppa_c" name="Propionate (n-C3:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppal_c" name="Propanal" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppap_c" name="Propanoyl phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O5P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppbng_c" name="Porphobilinogen" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppcoa_c" name="Propanoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H36N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppgpp_c" name="Guanosine 3',5'-bis(diphosphate)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O17P4</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pphn_c" name="Prephenate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppi_c" name="Diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppp9_c" name="Protoporphyrin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H32N4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pppg9_c" name="Protoporphyrinogen IX" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H38N4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pppi_c" name="Inorganic triphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO10P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pppn_c" name="Phenylpropanoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pram_c" name="5-Phospho-beta-D-ribosylamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO7P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pran_c" name="N-(5-Phospho-D-ribosyl)anthranilate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H13NO9P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_prbamp_c" name="1-(5-Phosphoribosyl)-AMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O14P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_prbatp_c" name="1-(5-Phosphoribosyl)-ATP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O20P4</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_preq0_c" name="7-cyano-7-carbaguanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5N5O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_preq1_c" name="7-aminomethyl-7-deazaguanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10N5O</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_prfp_c" name="1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O15P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_prlp_c" name="5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O15P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pro_DASH_L_c" name="L-Proline" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_progly_c" name="L-Prolinylglycine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_protrna_c" name="L-Prolyl-tRNA(Pro)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NOR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_prpp_c" name="5-Phospho-alpha-D-ribose 1-diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O14P3</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ps120_c" name="phosphatidylserine (didodecanoyl, n-C12:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57N1O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ps140_c" name="phosphatidylserine (ditetradecanoyl, n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65N1O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ps141_c" name="phosphatidylserine (ditetradec-7-enoyl, n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61N1O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ps160_c" name="phosphatidylserine (dihexadecanoyl, n-C16:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73N1O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ps161_c" name="phosphatidylserine (dihexadec-9-enoyl, n-C16:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69N1O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ps180_c" name="phosphatidylserine (dioctadecanoyl, n-C18:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81N1O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ps181_c" name="phosphatidylserine (dioctadec-11-enoyl, n-C18:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77N1O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_psclys_c" name="psicoselysine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pser_DASH_L_c" name="O-Phospho-L-serine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ptrc_c" name="Putrescine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pyam5p_c" name="Pyridoxamine 5'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N2O5P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydam_c" name="Pyridoxamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydx_c" name="Pyridoxal" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydx5p_c" name="Pyridoxal 5'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydxn_c" name="Pyridoxine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pyr_c" name="Pyruvate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_q8_c" name="Ubiquinone-8" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H74O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_q8h2_c" name="Ubiquinol-8" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H76O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_quin_c" name="Quinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_quln_c" name="Quinolinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H3NO4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_r15bp_c" name="D-Ribose 1,5-bisphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O11P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_r1p_c" name="alpha-D-Ribose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_r5p_c" name="alpha-D-Ribose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ragund_c" name="rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C69H113N1O16P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rbflvrd_c" name="Reduced riboflavin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H22N4O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rbl_DASH_L_c" name="L-Ribulose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rdmbzi_c" name="N1-(alpha-D-ribosyl)-5,6-dimethylbenzimidazole" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H18N2O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rephaccoa_c" name="Ring 1,2-epoxyphenylacetyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H38N7O18P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rhcys_c" name="S-Ribosyl-L-homocysteine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H17NO6S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rib_DASH_D_c" name="D-Ribose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ribflv_c" name="Riboflavin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H20N4O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rml_c" name="L-Rhamnulose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rml1p_c" name="L-Rhamnulose 1-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rmn_c" name="L-Rhamnose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ru5p_DASH_D_c" name="D-Ribulose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ru5p_DASH_L_c" name="L-Ribulose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_s17bp_c" name="Sedoheptulose 1,7-bisphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12O13P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_s7p_c" name="Sedoheptulose 7-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sarcs_c" name="Sarcosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sbt6p_c" name="D-Sorbitol 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sbzcoa_c" name="O-Succinylbenzoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C32H39N7O20P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_scl_c" name="sirohydrochlorin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H39N4O16</p>
+ <p>CHARGE: -7</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sectrna_c" name="L-Selenocysteinyl-tRNA(Sec)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOSeR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sel_c" name="Selenate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4Se</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_seln_c" name="Selenide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HSe</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_selnp_c" name="Selenophosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O3PSe</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ser_DASH_D_c" name="D-Serine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ser_DASH_L_c" name="L-Serine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_seramp_c" name="L-seryl-AMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H19N6O9P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sertrna_c" name="L-Seryl-tRNA(Ser)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO2R</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sertrna_LSQBKT_sec_RSQBKT__c" name="L-Seryl-tRNA(Sec)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO2R</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sheme_c" name="Siroheme" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H36FeN4O16</p>
+ <p>CHARGE: -8</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_skm_c" name="Shikimate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_skm5p_c" name="Shikimate 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O8P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sl26da_c" name="N-Succinyl-LL-2,6-diaminoheptanedioate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16N2O7</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sl2a6o_c" name="N-Succinyl-2-L-amino-6-oxoheptanedioate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO8</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_slnt_c" name="selenite" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3Se</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so2_c" name="sulfur dioxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so3_c" name="Sulfite" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so4_c" name="Sulfate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_spmd_c" name="Spermidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_stcoa_c" name="Stearoyl-CoA (n-C18:0CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H66N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_suc6p_c" name="Sucrose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H21O14P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucarg_c" name="N2-Succinyl-L-arginine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N4O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucbz_c" name="o-Succinylbenzoate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H8O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_succ_c" name="Succinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_succoa_c" name="Succinyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucglu_c" name="N2-Succinyl-L-glutamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO7</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucgsa_c" name="N2-Succinyl-L-glutamate 5-semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_suchms_c" name="O-Succinyl-L-homoserine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucorn_c" name="N2-Succinyl-L-ornithine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15N2O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucsal_c" name="Succinic semialdehyde" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sufbcd_c" name="SufBCD scaffold complex" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H8O2S6R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sufbcd_DASH_2fe2s_c" name="SufBCD with bound [2Fe-2S] cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4O2S8Fe2R</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sufbcd_DASH_2fe2s2_c" name="SufBCD with two bound [2Fe-2S] clusters" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S10Fe4R</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sufbcd_DASH_4fe4s_c" name="SufBCD with bound [4Fe-4S] cluster" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4O2S10Fe4R</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sufse_c" name="SufSE sulfur acceptor complex" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HSR</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sufsesh_c" name="SufSE with bound sulfur" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HS2R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sulfac_c" name="sulfoacetate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_t3c11vaceACP_c" name="trans-3-cis-11-vacceoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H51N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_t3c5ddeceACP_c" name="trans-3-cis-5-dodecenoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H39N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_t3c7mrseACP_c" name="trans-3-cis-7-myristoleoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H43N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_t3c9palmeACP_c" name="trans-3-cis-9-palmitoleoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H47N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tag6p_DASH_D_c" name="D-Tagatose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tagdp_DASH_D_c" name="D-Tagatose 1,6-biphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O12P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tagur_c" name="D-Tagaturonate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tartr_DASH_D_c" name="D-tartrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tartr_DASH_L_c" name="L-tartrate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_taur_c" name="Taurine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tcynt_c" name="Thiocyanate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_td2coa_c" name="trans-Tetradec-2-enoyl-CoA" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tdcoa_c" name="Tetradecanoyl-CoA (n-C14:0CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H58N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tddec2eACP_c" name="trans-Dodec-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tdeACP_c" name="cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tdec2eACP_c" name="trans-Dec-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tdecoa_c" name="Tetradecenoyl-CoA (n-C14:1CoA)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O17P3S</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thdp_c" name="2,3,4,5-Tetrahydrodipicolinate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7NO4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thex2eACP_c" name="trans-Hex-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thf_c" name="5,6,7,8-Tetrahydrofolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H21N7O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thm_c" name="Thiamin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thmmp_c" name="Thiamin monophosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16N4O4PS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thmnp_c" name="Tetrahydromonapterin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thmpp_c" name="Thiamine diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16N4O7P2S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thptdn_c" name="5,6,7,8-tetrahydropteridine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10N4</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thr_DASH_L_c" name="L-Threonine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thrtrna_c" name="L-Threonyl-tRNA(Thr)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO2R</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thym_c" name="Thymine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thymd_c" name="Thymidine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tma_c" name="trimethylamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tmao_c" name="Trimethylamine N-oxide" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tmrs2eACP_c" name="trans-Tetradec-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_toct2eACP_c" name="trans-Oct-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_toctd2eACP_c" name="trans-octadec-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tpalm2eACP_c" name="trans-Hexadec-2-enoyl-[acyl-carrier protein]" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O8PRS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trdox_c" name="Oxidized thioredoxin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trdrd_c" name="Reduced thioredoxin" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tre_c" name="Trehalose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tre6p_c" name="alpha,alpha'-Trehalose 6-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H21O14P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaala_c" name="tRNA(Ala)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaarg_c" name="tRNA(Arg)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaasn_c" name="tRNA(Asn)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17O10PR2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaasp_c" name="tRNA(Asp)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnacys_c" name="tRNA(Cys)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnagln_c" name="tRNA(Gln)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaglu_c" name="tRNA (Glu)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnagly_c" name="tRNA(Gly)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnahis_c" name="tRNA(His)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaile_c" name="tRNA(Ile)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaleu_c" name="tRNA(Leu)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnalys_c" name="tRNA(Lys)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnamet_c" name="tRNA(Met)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaphe_c" name="tRNA(Phe)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnapro_c" name="tRNA(Pro)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnasecys_c" name="tRNA(SeCys)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaser_c" name="tRNA(Ser)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnathr_c" name="tRNA(Thr)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnatrp_c" name="tRNA(Trp)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnatyr_c" name="tRNA(Tyr)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trnaval_c" name="tRNA(Val)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trp_DASH_L_c" name="L-Tryptophan" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trptrna_c" name="L-Tryptophanyl-tRNA(Trp)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H11N2OR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tsul_c" name="Thiosulfate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdca_c" name="tetradecanoate (n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdcap_c" name="Tetradecanoyl-phosphate (n-C14:0)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H28O5P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdcea_c" name="tetradecenoate (n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdceap_c" name="Tetradecanoyl-phosphate (n-C14:1)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H26O5P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tungs_c" name="tungstate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tyr_DASH_L_c" name="L-Tyrosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tyrtrna_c" name="L-Tyrosyl-tRNA(Tyr)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO2R</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_u23ga_c" name="UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H75N3O20P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_u3aga_c" name="UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H51N3O19P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_u3hga_c" name="UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H50N3O18P2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uLa4fn_c" name="undecaprenyl phosphate-4-amino-4-formyl-L-arabinose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C61H99N1O8P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uLa4n_c" name="undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H100N1O7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uaagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C95H152N8O28P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uaccg_c" name="UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H26N3O19P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uacgam_c" name="UDP-N-acetyl-D-glucosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uacmam_c" name="UDP-N-acetyl-D-mannosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uacmamu_c" name="UDP-N-acetyl-D-mannosaminouronate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H22N3O18P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C87H139N7O23P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uama_c" name="UDP-N-acetylmuramoyl-L-alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H33N4O20P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uamag_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H39N5O23P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uamr_c" name="UDP-N-acetylmuramate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H28N3O19P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udcpdp_c" name="Undecaprenyl diphosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udcpp_c" name="Undecaprenyl phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O4P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udp_c" name="UDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O12P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpLa4fn_c" name="uridine 5''-diphospho-{beta}-4-deoxy-4-formamido-L-arabinose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N3O16P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpLa4n_c" name="uridine 5''-diphospho-{beta}-4-deoxy-4-amino-L-arabinose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N3O15P2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpLa4o_c" name="UDP-4-keto-pyranose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H18N2O16P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpg_c" name="UDPglucose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpgal_c" name="UDPgalactose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpgalfur_c" name="UDP-D-galacto-1,4-furanose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpglcur_c" name="UDP-D-glucuronate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ugmd_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H51N7O26P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ugmda_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H61N9O28P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_um4p_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H56N8O27P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ump_c" name="UMP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_unaga_c" name="Undecaprenyl diphospho N-acetyl-glucosamine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C63H103NO12P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_unagamu_c" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H113N2O18P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_unagamuf_c" name="Undecaprenyl-diphospho N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4,6-dideoxy-D-galactose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H126N3O22P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uppg3_c" name="Uroporphyrinogen III" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H36N4O16</p>
+ <p>CHARGE: -8</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ura_c" name="Uracil" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uracp_c" name="Ureidoacrylate peracid" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N2O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_urate_c" name="Urate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_urdglyc_c" name="(-)-Ureidoglycolate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5N2O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_urea_c" name="Urea" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uri_c" name="Uridine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_utp_c" name="UTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O15P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_val_DASH_L_c" name="L-Valine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_valtrna_c" name="L-Valyl-tRNA(Val)" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NOR</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_wco_c" name="tungsten binding cofactor" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10N5O8PS2W</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xan_c" name="Xanthine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xdp_c" name="XDP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O12P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xmp_c" name="Xanthosine 5'-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xtp_c" name="XTP" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O15P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xtsn_c" name="Xanthosine" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xu5p_DASH_D_c" name="D-Xylulose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xu5p_DASH_L_c" name="L-Xylulose 5-phosphate" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xyl_DASH_D_c" name="D-Xylose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xylu_DASH_D_c" name="D-Xylulose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xylu_DASH_L_c" name="L-Xylulose" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_zn2_c" name="Zinc" compartment="c">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12ppd_DASH_R_e" name="(R)-Propane-1,2-diol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12ppd_DASH_S_e" name="(S)-Propane-1,2-diol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_14glucan_e" name="1,4-alpha-D-glucan" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_15dap_e" name="1,5-Diaminopentane" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23camp_e" name="2',3'-Cyclic AMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23ccmp_e" name="2',3'-Cyclic CMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23cgmp_e" name="2',3'-Cyclic GMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23cump_e" name="2',3'-Cyclic UMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dappa_e" name="2,3-diaminopropionate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_26dap_DASH_M_e" name="meso-2,6-Diaminoheptanedioate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_e" name="2-Dehydro-3-deoxy-D-gluconate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_34dhpac_e" name="3,4-Dihydroxyphenylacetaldehyde" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3amp_e" name="3'-AMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3cmp_e" name="3'-cmp" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3gmp_e" name="3'-GMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_e" name="3-hydroxycinnamic acid" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hpp_e" name="3-Hydroxypropanoate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hpppn_e" name="3-(3-hydroxy-phenyl)propionate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ump_e" name="3'-UMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4abut_e" name="4-Aminobutanoate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_e" name="4-Hydroxyphenylacetaldehyde" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5dglcn_e" name="5-Dehydro-D-gluconate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5mtr_e" name="5-Methylthio-D-ribose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O4S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDglu_e" name="L-alanine-D-glutamate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_e" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_e" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaLglu_e" name="L-alanine-L-glutamate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ac_e" name="Acetate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acac_e" name="Acetoacetate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acald_e" name="Acetaldehyde" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgal_e" name="N-Acetyl-D-galactosamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgal1p_e" name="N-Acetyl-D-galactosamine 1-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgam_e" name="N-Acetyl-D-glucosamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgam1p_e" name="N-Acetyl-D-glucosamine 1-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmana_e" name="N-Acetyl-D-mannosamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmum_e" name="N-Acetylmuramate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acnam_e" name="N-Acetylneuraminate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acolipa_e" name="4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>CHARGE: -9</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acser_e" name="O-Acetyl-L-serine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ade_e" name="Adenine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adn_e" name="Adenosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adocbl_e" name="Adenosylcobalamin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ag_e" name="silver" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ag</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_agm_e" name="Agmatine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_akg_e" name="2-Oxoglutarate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_B_e" name="beta-Alanine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_D_e" name="D-Alanine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_L_e" name="L-Alanine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alaala_e" name="D-Alanyl-D-alanine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_all_DASH_D_e" name="D-Allose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alltn_e" name="Allantoin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_amp_e" name="AMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhgm_e" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arab_DASH_L_e" name="L-Arabinose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbt_e" name="Arbutin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16O7</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbtn_e" name="aerobactin minus Fe3" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbtn_DASH_fe3_e" name="Aerobactin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arg_DASH_L_e" name="L-Arginine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ascb_DASH_L_e" name="L-Ascorbate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asn_DASH_L_e" name="L-Asparagine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aso3_e" name="arsenite" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asp_DASH_L_e" name="L-Aspartate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_btn_e" name="Biotin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_but_e" name="Butyrate (n-C4:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_butso3_e" name="butanesulfonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ca2_e" name="Calcium" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbi_e" name="Cobinamide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbl1_e" name="Cob(I)alamin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cd2_e" name="Cadmium" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cgly_e" name="Cys-Gly" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_chol_e" name="Choline" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_chtbs_e" name="N,N'-diacetylchitobiose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H28N2O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cit_e" name="Citrate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cl_e" name="Chloride" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cm_e" name="Chloramphenicol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12Cl2N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cmp_e" name="CMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_co2_e" name="CO2" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cobalt2_e" name="Co2+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_colipa_e" name="core oligosaccharide lipid A" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_colipap_e" name="core oligosaccharide lipid A diphosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O103P5</p>
+ <p>CHARGE: -12</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpgn_e" name="coprogen" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpgn_DASH_un_e" name="coprogen unloaded (no Fe(III))" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crn_e" name="L-Carnitine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crn_DASH_D_e" name="D-Carnitine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_csn_e" name="Cytosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cu_e" name="Cu+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cu2_e" name="Cu2+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cyan_e" name="Hydrogen cyanide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cynt_e" name="Cyanate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cys_DASH_D_e" name="D-Cysteine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cys_DASH_L_e" name="L-Cysteine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cytd_e" name="Cytidine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dad_DASH_2_e" name="Deoxyadenosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_damp_e" name="dAMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dca_e" name="Decanoate (n-C10:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcmp_e" name="dCMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcyt_e" name="Deoxycytidine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ddca_e" name="Dodecanoate (n-C12:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgmp_e" name="dGMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgsn_e" name="Deoxyguanosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dha_e" name="Dihydroxyacetone" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dimp_e" name="dIMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_din_e" name="Deoxyinosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dms_e" name="Dimethyl sulfide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dmso_e" name="Dimethyl sulfoxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dopa_e" name="Dopamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_doxrbcn_e" name="doxorubicin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H29NO11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtmp_e" name="dTMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dump_e" name="dUMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_duri_e" name="Deoxyuridine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_e" name="(enterobacterial common antigen)x4 core oligosaccharide lipid A" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>CHARGE: -15</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_enlipa_e" name="phosphoethanolamine KDO(2)-lipid (A)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_enter_e" name="Enterochelin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_etha_e" name="Ethanolamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ethso3_e" name="ethanesulfonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_etoh_e" name="Ethanol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_f6p_e" name="D-Fructose 6-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fald_e" name="Formaldehyde" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe2_e" name="Fe2+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3_e" name="Fe3+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3dcit_e" name="Fe(III)dicitrate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H10FeO14</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_e" name="ferric 2,3-dihydroxybenzoylserine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3hox_e" name="Fe(III)hydroxamate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3hox_DASH_un_e" name="Fe(III)hydoxamate, unloaded" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fecrm_e" name="Ferrichrome" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fecrm_DASH_un_e" name="Ferrichrome minus Fe(III)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feenter_e" name="Fe-enterobactin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feoxam_e" name="ferroxamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feoxam_DASH_un_e" name="ferroxamine minus Fe(3)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_for_e" name="Formate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fru_e" name="D-Fructose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_frulys_e" name="fructoselysine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fruur_e" name="D-Fructuronate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fuc_DASH_L_e" name="L-Fucose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fum_e" name="Fumarate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fusa_e" name="fusidic acid" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g1p_e" name="D-Glucose 1-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pc_e" name="sn-Glycero-3-phosphocholine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pe_e" name="sn-Glycero-3-phosphoethanolamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pg_e" name="Glycerophosphoglycerol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pi_e" name="sn-Glycero-3-phospho-1-inositol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3ps_e" name="Glycerophosphoserine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g6p_e" name="D-Glucose 6-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal_e" name="D-Galactose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal_DASH_bD_e" name="beta D-Galactose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal1p_e" name="alpha-D-Galactose 1-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galct_DASH_D_e" name="D-Galactarate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galctn_DASH_D_e" name="D-Galactonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galctn_DASH_L_e" name="L-Galactonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galt_e" name="Galactitol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galur_e" name="D-Galacturonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gam_e" name="D-Glucosamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gam6p_e" name="D-Glucosamine 6-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gbbtn_e" name="gamma-butyrobetaine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdp_e" name="GDP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glc_DASH_D_e" name="D-Glucose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcn_e" name="D-Gluconate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcr_e" name="D-Glucarate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcur_e" name="D-Glucuronate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcur1p_e" name="D-Glucuronate 1-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gln_DASH_L_e" name="L-Glutamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glu_DASH_L_e" name="L-Glutamate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gly_e" name="Glycine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyald_e" name="D-Glyceraldehyde" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyb_e" name="Glycine betaine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc_e" name="Glycerol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc_DASH_R_e" name="(R)-Glycerate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc2p_e" name="Glycerol 2-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc3p_e" name="Glycerol 3-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyclt_e" name="Glycolate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gmp_e" name="GMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gsn_e" name="Guanosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gthox_e" name="Oxidized glutathione" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gthrd_e" name="Reduced glutathione" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gtp_e" name="GTP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gua_e" name="Guanine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h_e" name="H+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2_e" name="H2" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2o_e" name="H2O" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2o2_e" name="Hydrogen peroxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2s_e" name="Hydrogen sulfide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hacolipa_e" name="hepta-acylated core oligosaccharide lipid A (E. coli)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C192H333N2O101P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_halipa_e" name="hepta-acylated KDO(2)-lipid (A)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C126H226N2O40P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdca_e" name="Hexadecanoate (n-C16:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdcea_e" name="Hexadecenoate (n-C16:1)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hg2_e" name="Hg2+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_his_DASH_L_e" name="L-Histidine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hom_DASH_L_e" name="L-Homoserine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hxa_e" name="Hexanoate (n-C6:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hxan_e" name="Hypoxanthine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_idon_DASH_L_e" name="L-Idonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ile_DASH_L_e" name="L-Isoleucine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_imp_e" name="IMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_indole_e" name="Indole" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_inost_e" name="myo-Inositol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ins_e" name="Inosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_isetac_e" name="Isethionic acid" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_k_e" name="potassium" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_e" name="KDO(2)-lipid IV(A)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lac_DASH_D_e" name="D-Lactate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lac_DASH_L_e" name="L-Lactate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lcts_e" name="Lactose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_leu_DASH_L_e" name="L-Leucine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipa_e" name="KDO(2)-lipid (A)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipa_cold_e" name="cold adapted KDO(2)-lipid (A)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipoate_e" name="Lipoate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14O2S2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lys_DASH_L_e" name="L-Lysine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lyx_DASH_L_e" name="L-Lyxose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mal_DASH_D_e" name="D-Malate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mal_DASH_L_e" name="L-Malate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malt_e" name="Maltose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malthx_e" name="Maltohexaose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_maltpt_e" name="Maltopentaose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malttr_e" name="Maltotriose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_maltttr_e" name="Maltotetraose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man_e" name="D-Mannose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man6p_e" name="D-Mannose 6-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_manglyc_e" name="2(alpha-D-Mannosyl)-D-glycerate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_melib_e" name="Melibiose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_meoh_e" name="Methanol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4O1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_met_DASH_D_e" name="D-Methionine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_met_DASH_L_e" name="L-Methionine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_metsox_DASH_R_DASH_L_e" name="L-methionine-R-sulfoxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_metsox_DASH_S_DASH_L_e" name="L-Methionine Sulfoxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mg2_e" name="magnesium" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mincyc_e" name="minocycline" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H27N3O7</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_minohp_e" name="myo-Inositol hexakisphosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>CHARGE: -12</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mmet_e" name="S-Methyl-L-methionine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mn2_e" name="Mn2+" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mnl_e" name="D-Mannitol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mobd_e" name="Molybdate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: MoO4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mso3_e" name="methanesulfonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_n2o_e" name="Nitrous oxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_na1_e" name="Sodium" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nac_e" name="Nicotinate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nh4_e" name="Ammonium" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ni2_e" name="nickel" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nmn_e" name="NMN" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no_e" name="Nitric oxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no2_e" name="Nitrite" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no3_e" name="Nitrate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_novbcn_e" name="novobiocin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H36N2O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o16a4colipa_e" name="(O16 antigen)x4 core oligosaccharide lipid A" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C312H523N6O200P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o2_e" name="O2" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o2s_e" name="Superoxide anion" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdca_e" name="octadecanoate (n-C18:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdcea_e" name="octadecenoate (n-C18:1)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_octa_e" name="octanoate (n-C8:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_orn_e" name="Ornithine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_orot_e" name="Orotate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pacald_e" name="Phenylacetaldehyde" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_peamn_e" name="Phenethylamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phe_DASH_L_e" name="L-Phenylalanine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pheme_e" name="Protoheme" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pi_e" name="Phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pnto_DASH_R_e" name="(R)-Pantothenate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppa_e" name="Propionate (n-C3:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppal_e" name="Propanal" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pppn_e" name="Phenylpropanoate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppt_e" name="Phosphonate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pro_DASH_L_e" name="L-Proline" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_progly_e" name="L-Prolinylglycine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_psclys_e" name="psicoselysine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pser_DASH_L_e" name="O-Phospho-L-serine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ptrc_e" name="Putrescine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydam_e" name="Pyridoxamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydx_e" name="Pyridoxal" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydxn_e" name="Pyridoxine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pyr_e" name="Pyruvate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_quin_e" name="Quinate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_r5p_e" name="alpha-D-Ribose 5-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rfamp_e" name="rifampin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H58N4O12</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rib_DASH_D_e" name="D-Ribose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rmn_e" name="L-Rhamnose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sbt_DASH_D_e" name="D-Sorbitol" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sel_e" name="Selenate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4Se</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ser_DASH_D_e" name="D-Serine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ser_DASH_L_e" name="L-Serine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_skm_e" name="Shikimate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_slnt_e" name="selenite" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3Se</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so2_e" name="sulfur dioxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so3_e" name="Sulfite" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so4_e" name="Sulfate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_spmd_e" name="Spermidine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_succ_e" name="Succinate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucr_e" name="Sucrose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sulfac_e" name="sulfoacetate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tartr_DASH_D_e" name="D-tartrate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tartr_DASH_L_e" name="L-tartrate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_taur_e" name="Taurine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tcynt_e" name="Thiocyanate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thm_e" name="Thiamin" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thr_DASH_L_e" name="L-Threonine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thrp_e" name="L-Threonine O-3-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thym_e" name="Thymine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thymd_e" name="Thymidine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tma_e" name="trimethylamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tmao_e" name="Trimethylamine N-oxide" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tre_e" name="Trehalose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trp_DASH_L_e" name="L-Tryptophan" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tsul_e" name="Thiosulfate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdca_e" name="tetradecanoate (n-C14:0)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdcea_e" name="tetradecenoate (n-C14:1)" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttrcyc_e" name="tetracycline" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H24N2O8</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tungs_e" name="tungstate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tym_e" name="Tyramine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tyr_DASH_L_e" name="L-Tyrosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tyrp_e" name="Phosphotyrosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uacgam_e" name="UDP-N-acetyl-D-glucosamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpacgal_e" name="UDP-N-acetyl-D-galactosamine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpg_e" name="UDPglucose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpgal_e" name="UDPgalactose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpglcur_e" name="UDP-D-glucuronate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ump_e" name="UMP" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ura_e" name="Uracil" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_urea_e" name="Urea" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uri_e" name="Uridine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_val_DASH_L_e" name="L-Valine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xan_e" name="Xanthine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xmp_e" name="Xanthosine 5'-phosphate" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xtsn_e" name="Xanthosine" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xyl_DASH_D_e" name="D-Xylose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xylu_DASH_L_e" name="L-Xylulose" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_zn2_e" name="Zinc" compartment="e">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr120_p" name="1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H52O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr140_p" name="1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H60O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr141_p" name="1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H56O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr160_p" name="1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H68O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr161_p" name="1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H64O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr180_p" name="1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H76O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12dgr181_p" name="1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H72O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12ppd_DASH_R_p" name="(R)-Propane-1,2-diol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_12ppd_DASH_S_p" name="(S)-Propane-1,2-diol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_14glucan_p" name="1,4-alpha-D-glucan" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_15dap_p" name="1,5-Diaminopentane" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpe120_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpe140_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpe141_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpe160_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpe161_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpe180_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpe181_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpg120_p" name="1-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpg140_p" name="1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpg141_p" name="1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpg160_p" name="1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpg161_p" name="1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpg180_p" name="1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1agpg181_p" name="1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1ddecg3p_p" name="1-dodecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H29O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1hdec9eg3p_p" name="1-hexadec-9-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1hdecg3p_p" name="1-hexadecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H37O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1odec11eg3p_p" name="1-octadec-11-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1odecg3p_p" name="1-octadecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H41O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1tdec7eg3p_p" name="1-tetradec-7-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_1tdecg3p_p" name="1-tetradecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H33O7P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23camp_p" name="2',3'-Cyclic AMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23ccmp_p" name="2',3'-Cyclic CMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23cgmp_p" name="2',3'-Cyclic GMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23cump_p" name="2',3'-Cyclic UMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_23dappa_p" name="2,3-diaminopropionate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_26dap_DASH_M_p" name="meso-2,6-Diaminoheptanedioate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe120_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe140_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe141_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe160_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe161_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe180_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpe181_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg120_p" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg140_p" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg141_p" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg160_p" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg161_p" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg180_p" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2agpg181_p" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ddecg3p_p" name="2-dodecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H30O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_p" name="2-Dehydro-3-deoxy-D-gluconate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2hdec9eg3p_p" name="2-hexadec-9-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H36O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2hdecg3p_p" name="2-hexadecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2odec11eg3p_p" name="2-octadec-11-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H40O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2odecg3p_p" name="2-octadecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2tdec7eg3p_p" name="2-tetradec-7-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H32O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_2tdecg3p_p" name="2-tetradecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H34O7P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_34dhpac_p" name="3,4-Dihydroxyphenylacetaldehyde" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3amp_p" name="3'-AMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3cmp_p" name="3'-cmp" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3gmp_p" name="3'-GMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_p" name="3-hydroxycinnamic acid" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hpp_p" name="3-Hydroxypropanoate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3hpppn_p" name="3-(3-hydroxy-phenyl)propionate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_3ump_p" name="3'-UMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4abut_p" name="4-Aminobutanoate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_p" name="4-Hydroxyphenylacetaldehyde" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5dglcn_p" name="5-Dehydro-D-gluconate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_5mtr_p" name="5-Methylthio-D-ribose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O4S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDglu_p" name="L-alanine-D-glutamate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_p" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_p" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_LalaLglu_p" name="L-alanine-L-glutamate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ac_p" name="Acetate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acac_p" name="Acetoacetate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acald_p" name="Acetaldehyde" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgal_p" name="N-Acetyl-D-galactosamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgal1p_p" name="N-Acetyl-D-galactosamine 1-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgam_p" name="N-Acetyl-D-glucosamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acgam1p_p" name="N-Acetyl-D-glucosamine 1-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmana_p" name="N-Acetyl-D-mannosamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acmum_p" name="N-Acetylmuramate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acnam_p" name="N-Acetylneuraminate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acolipa_p" name="4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>CHARGE: -9</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_acser_p" name="O-Acetyl-L-serine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ade_p" name="Adenine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adn_p" name="Adenosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_adocbl_p" name="Adenosylcobalamin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_agm_p" name="Agmatine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_akg_p" name="2-Oxoglutarate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_B_p" name="beta-Alanine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_D_p" name="D-Alanine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ala_DASH_L_p" name="L-Alanine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alaala_p" name="D-Alanyl-D-alanine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_all_DASH_D_p" name="D-Allose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alltn_p" name="Allantoin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_alpp_p" name="applipoprotein" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_amp_p" name="AMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhgm_p" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhgm3p_p" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H52N6O19</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_anhgm4p_p" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H57N7O20</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arab_DASH_L_p" name="L-Arabinose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbt_p" name="Arbutin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16O7</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbtn_p" name="aerobactin minus Fe3" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arbtn_DASH_fe3_p" name="Aerobactin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_arg_DASH_L_p" name="L-Arginine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ascb_DASH_L_p" name="L-Ascorbate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asn_DASH_L_p" name="L-Asparagine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_aso3_p" name="arsenite" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_asp_DASH_L_p" name="L-Aspartate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_btn_p" name="Biotin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_but_p" name="Butyrate (n-C4:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_butso3_p" name="butanesulfonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ca2_p" name="Calcium" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbi_p" name="Cobinamide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cbl1_p" name="Cob(I)alamin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cd2_p" name="Cadmium" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cgly_p" name="Cys-Gly" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_chol_p" name="Choline" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_chtbs_p" name="N,N'-diacetylchitobiose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H28N2O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cit_p" name="Citrate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cl_p" name="Chloride" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_clpn120_p" name="cardiolipin (tetradodecanoyl, n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C57H108O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_clpn140_p" name="cardiolipin (tetratetradecanoyl, n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C65H124O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_clpn141_p" name="cardiolipin (tetratetradec-7-enoyl, n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C65H116O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_clpn160_p" name="cardiolipin (tetrahexadecanoyl, n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H140O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_clpn161_p" name="cardiolipin (tetrahexadec-9-enoyl, n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H132O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_clpn180_p" name="cardiolipin (tetraoctadecanoyl, n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C81H156O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_clpn181_p" name="cardiolipin (tetraoctadec-11-enoyl, n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C81H148O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cm_p" name="Chloramphenicol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12Cl2N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cmp_p" name="CMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_co2_p" name="CO2" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cobalt2_p" name="Co2+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_colipa_p" name="core oligosaccharide lipid A" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_colipap_p" name="core oligosaccharide lipid A diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O103P5</p>
+ <p>CHARGE: -12</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpgn_p" name="coprogen" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cpgn_DASH_un_p" name="coprogen unloaded (no Fe(III))" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crn_p" name="L-Carnitine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_crn_DASH_D_p" name="D-Carnitine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_csn_p" name="Cytosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ctbt_p" name="crotonobetaine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cu_p" name="Cu+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cu2_p" name="Cu2+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cyan_p" name="Hydrogen cyanide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cynt_p" name="Cyanate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cys_DASH_D_p" name="D-Cysteine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cys_DASH_L_p" name="L-Cysteine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_cytd_p" name="Cytidine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dad_DASH_2_p" name="Deoxyadenosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_damp_p" name="dAMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dca_p" name="Decanoate (n-C10:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcmp_p" name="dCMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dcyt_p" name="Deoxycytidine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ddca_p" name="Dodecanoate (n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgmp_p" name="dGMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dgsn_p" name="Deoxyguanosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dha_p" name="Dihydroxyacetone" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dimp_p" name="dIMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_din_p" name="Deoxyinosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dms_p" name="Dimethyl sulfide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dmso_p" name="Dimethyl sulfoxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dopa_p" name="Dopamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_doxrbcn_p" name="doxorubicin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H29NO11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbaox_p" name="periplasmic protein disulfide isomerase I (oxidized)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbard_p" name="periplasmic protein disulfide isomerase I (reduced)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbcox_p" name="protein disulfide isomerase II (oxidized)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbcrd_p" name="protein disulfide isomerase II (reduced)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbgox_p" name="periplasmic disulfide isomerase/thiol-disulphide oxidase (oxidized)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dsbgrd_p" name="periplasmic disulfide isomerase/thiol-disulphide oxidase (reduced)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dtmp_p" name="dTMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_dump_p" name="dUMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_duri_p" name="Deoxyuridine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_eca2und_p" name="(enterobacterial common antigen)x2 undecaprenyl-diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C103H162N6O37P2</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_eca3und_p" name="(enterobacterial common antigen)x3 undecaprenyl-diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C127H198N9O52P2</p>
+ <p>CHARGE: -5</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_p" name="(enterobacterial common antigen)x4 core oligosaccharide lipid A" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>CHARGE: -15</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_eca4und_p" name="(enterobacterial common antigen)x4 undecaprenyl-diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H234N12O67P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_enlipa_p" name="phosphoethanolamine KDO(2)-lipid (A)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_enter_p" name="Enterochelin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_etha_p" name="Ethanolamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ethso3_p" name="ethanesulfonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_etoh_p" name="Ethanol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_f6p_p" name="D-Fructose 6-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fald_p" name="Formaldehyde" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe2_p" name="Fe2+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3_p" name="Fe3+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3dcit_p" name="Fe(III)dicitrate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H10FeO14</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_p" name="ferric 2,3-dihydroxybenzoylserine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3hox_p" name="Fe(III)hydroxamate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fe3hox_DASH_un_p" name="Fe(III)hydoxamate, unloaded" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fecrm_p" name="Ferrichrome" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fecrm_DASH_un_p" name="Ferrichrome minus Fe(III)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feenter_p" name="Fe-enterobactin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feoxam_p" name="ferroxamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_feoxam_DASH_un_p" name="ferroxamine minus Fe(3)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_for_p" name="Formate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fru_p" name="D-Fructose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_frulys_p" name="fructoselysine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fruur_p" name="D-Fructuronate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fuc_DASH_L_p" name="L-Fucose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fum_p" name="Fumarate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_fusa_p" name="fusidic acid" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g1p_p" name="D-Glucose 1-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pc_p" name="sn-Glycero-3-phosphocholine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pe_p" name="sn-Glycero-3-phosphoethanolamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pg_p" name="Glycerophosphoglycerol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3pi_p" name="sn-Glycero-3-phospho-1-inositol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g3ps_p" name="Glycerophosphoserine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_g6p_p" name="D-Glucose 6-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal_p" name="D-Galactose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal_DASH_bD_p" name="beta D-Galactose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gal1p_p" name="alpha-D-Galactose 1-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galct_DASH_D_p" name="D-Galactarate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galctn_DASH_D_p" name="D-Galactonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galctn_DASH_L_p" name="L-Galactonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galt_p" name="Galactitol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_galur_p" name="D-Galacturonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gam_p" name="D-Glucosamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gam6p_p" name="D-Glucosamine 6-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gbbtn_p" name="gamma-butyrobetaine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gdp_p" name="GDP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glc_DASH_D_p" name="D-Glucose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcn_p" name="D-Gluconate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcr_p" name="D-Glucarate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcur_p" name="D-Glucuronate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glcur1p_p" name="D-Glucuronate 1-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gln_DASH_L_p" name="L-Glutamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glu_DASH_L_p" name="L-Glutamate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gly_p" name="Glycine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyald_p" name="D-Glyceraldehyde" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyb_p" name="Glycine betaine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc_p" name="Glycerol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc_DASH_R_p" name="(R)-Glycerate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc2p_p" name="Glycerol 2-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyc3p_p" name="Glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_glyclt_p" name="Glycolate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gmp_p" name="GMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gsn_p" name="Guanosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gthox_p" name="Oxidized glutathione" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gthrd_p" name="Reduced glutathione" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gtp_p" name="GTP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_gua_p" name="Guanine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h_p" name="H+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2_p" name="H2" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2o_p" name="H2O" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2o2_p" name="Hydrogen peroxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_h2s_p" name="Hydrogen sulfide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdca_p" name="Hexadecanoate (n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hdcea_p" name="Hexadecenoate (n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hg2_p" name="Hg2+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_his_DASH_L_p" name="L-Histidine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hom_DASH_L_p" name="L-Homoserine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hxa_p" name="Hexanoate (n-C6:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_hxan_p" name="Hypoxanthine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_idon_DASH_L_p" name="L-Idonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ile_DASH_L_p" name="L-Isoleucine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_imp_p" name="IMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_indole_p" name="Indole" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_inost_p" name="myo-Inositol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ins_p" name="Inosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_isetac_p" name="Isethionic acid" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_k_p" name="potassium" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_p" name="KDO(2)-lipid IV(A)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lac_DASH_D_p" name="D-Lactate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lac_DASH_L_p" name="L-Lactate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lcts_p" name="Lactose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_leu_DASH_L_p" name="L-Leucine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipa_p" name="KDO(2)-lipid (A)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipa_cold_p" name="cold adapted KDO(2)-lipid (A)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lipoate_p" name="Lipoate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14O2S2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lpp_p" name="lipoprotein" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XC16H30O1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lys_DASH_L_p" name="L-Lysine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_lyx_DASH_L_p" name="L-Lyxose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mal_DASH_D_p" name="D-Malate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mal_DASH_L_p" name="L-Malate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malt_p" name="Maltose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malthx_p" name="Maltohexaose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_maltpt_p" name="Maltopentaose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_malttr_p" name="Maltotriose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_maltttr_p" name="Maltotetraose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man_p" name="D-Mannose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_man6p_p" name="D-Mannose 6-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_manglyc_p" name="2(alpha-D-Mannosyl)-D-glycerate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_melib_p" name="Melibiose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_meoh_p" name="Methanol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4O1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_met_DASH_D_p" name="D-Methionine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_met_DASH_L_p" name="L-Methionine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_metsox_DASH_R_DASH_L_p" name="L-methionine-R-sulfoxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_metsox_DASH_S_DASH_L_p" name="L-Methionine Sulfoxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mg2_p" name="magnesium" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mincyc_p" name="minocycline" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H27N3O7</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_minohp_p" name="myo-Inositol hexakisphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>CHARGE: -12</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mmet_p" name="S-Methyl-L-methionine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mn2_p" name="Mn2+" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mnl_p" name="D-Mannitol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mobd_p" name="Molybdate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: MoO4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_mso3_p" name="methanesulfonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein3p3p_p" name="two linked disacharide tripeptide murein units (uncrosslinked, middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H104N12O38</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein3px3p_p" name="two disacharide linked murein units, tripeptide crosslinked tripeptide (A2pm->A2pm) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H102N12O37</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein3px4p_p" name="two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H107N13O38</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein4p3p_p" name="two linked disacharide tetrapeptide and tripeptide murein units (uncrosslinked, middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H109N13O39</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein4p4p_p" name="two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H114N14O40</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein4px4p_p" name="two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H112N14O39</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein4px4p4p_p" name="three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala), one uncrosslinked tetrapaptide) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C111H169N21O59</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein4px4px4p_p" name="three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C111H167N21O58</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein5p3p_p" name="two linked disacharide pentapeptide and tripeptide murein units (uncrosslinked, middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H114N14O40</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein5p4p_p" name="two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C77H119N15O41</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein5p5p_p" name="two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C80H124N16O42</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein5p5p5p_p" name="three linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C120H186N24O63</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein5px3p_p" name="two disacharide linked murein units, pentapeptide corsslinked tripeptide (A2pm->A2pm) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H112N14O39</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein5px4p_p" name="two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C77H117N15O40</p>
+ <p>CHARGE: -4</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_murein5px4px4p_p" name="three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H172N22O59</p>
+ <p>CHARGE: -6</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_n2o_p" name="Nitrous oxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_na1_p" name="Sodium" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nac_p" name="Nicotinate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nh4_p" name="Ammonium" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ni2_p" name="nickel" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_nmn_p" name="NMN" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no_p" name="Nitric oxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no2_p" name="Nitrite" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_no3_p" name="Nitrate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_novbcn_p" name="novobiocin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H36N2O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o16a2und_p" name="(O16 antigen)x2 undecaprenyl diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C123H200N2O57P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o16a3und_p" name="(O16 antigen)x3 undecaprenyl diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C157H255N3O82P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o16a4colipa_p" name="(O16 antigen)x4 core oligosaccharide lipid A" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C312H523N6O200P4</p>
+ <p>CHARGE: -11</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o16a4und_p" name="(O16 antigen)x4 undecaprenyl diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C191H310N4O107P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o16aund_p" name="O16 antigen undecaprenyl diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C89H145N1O32P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o2_p" name="O2" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_o2s_p" name="Superoxide anion" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdca_p" name="octadecanoate (n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ocdcea_p" name="octadecenoate (n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_octa_p" name="octanoate (n-C8:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_orn_p" name="Ornithine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_orot_p" name="Orotate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa120_p" name="1,2-didodecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa140_p" name="1,2-ditetradecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H59O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa141_p" name="1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H55O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa160_p" name="1,2-dihexadecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H67O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa161_p" name="1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H63O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa180_p" name="1,2-dioctadecanoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H75O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pa181_p" name="1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H71O8P1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pacald_p" name="Phenylacetaldehyde" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe120_p" name="phosphatidylethanolamine (didodecanoyl, n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H58N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe140_p" name="phosphatidylethanolamine (ditetradecanoyl, n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H66N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe141_p" name="phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H62N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe160_p" name="phosphatidylethanolamine (dihexadecanoyl, n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H74N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe161_p" name="phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H70N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe180_p" name="phosphatidylethanolamine (dioctadecanoyl, n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H82N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pe181_p" name="phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H78N1O8P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_peamn_p" name="Phenethylamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg120_p" name="Phosphatidylglycerol (didodecanoyl, n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H58O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg140_p" name="Phosphatidylglycerol (ditetradecanoyl, n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H66O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg141_p" name="Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H62O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg160_p" name="Phosphatidylglycerol (dihexadecanoyl, n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H74O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg161_p" name="Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H70O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg180_p" name="Phosphatidylglycerol (dioctadecanoyl, n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H82O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pg181_p" name="Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H78O10P1</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp120_p" name="Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp140_p" name="Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp141_p" name="Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp160_p" name="Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp161_p" name="Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp180_p" name="Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pgp181_p" name="Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77O13P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_phe_DASH_L_p" name="L-Phenylalanine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pheme_p" name="Protoheme" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pi_p" name="Phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pnto_DASH_R_p" name="(R)-Pantothenate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppa_p" name="Propionate (n-C3:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppal_p" name="Propanal" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pppn_p" name="Phenylpropanoate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ppt_p" name="Phosphonate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pro_DASH_L_p" name="L-Proline" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_progly_p" name="L-Prolinylglycine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_psclys_p" name="psicoselysine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pser_DASH_L_p" name="O-Phospho-L-serine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ptrc_p" name="Putrescine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydam_p" name="Pyridoxamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O2</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydx_p" name="Pyridoxal" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pydxn_p" name="Pyridoxine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_pyr_p" name="Pyruvate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_quin_p" name="Quinate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_r5p_p" name="alpha-D-Ribose 5-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rfamp_p" name="rifampin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H58N4O12</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rib_DASH_D_p" name="D-Ribose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_rmn_p" name="L-Rhamnose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sbt_DASH_D_p" name="D-Sorbitol" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sel_p" name="Selenate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4Se</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ser_DASH_D_p" name="D-Serine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ser_DASH_L_p" name="L-Serine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_skm_p" name="Shikimate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_slnt_p" name="selenite" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3Se</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so2_p" name="sulfur dioxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so3_p" name="Sulfite" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_so4_p" name="Sulfate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_spmd_p" name="Spermidine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>CHARGE: 3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_succ_p" name="Succinate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sucr_p" name="Sucrose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_sulfac_p" name="sulfoacetate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tartr_DASH_D_p" name="D-tartrate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tartr_DASH_L_p" name="L-tartrate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_taur_p" name="Taurine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tcynt_p" name="Thiocyanate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thm_p" name="Thiamin" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thr_DASH_L_p" name="L-Threonine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thrp_p" name="L-Threonine O-3-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thym_p" name="Thymine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_thymd_p" name="Thymidine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tma_p" name="trimethylamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tmao_p" name="Trimethylamine N-oxide" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tre_p" name="Trehalose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_trp_DASH_L_p" name="L-Tryptophan" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tsul_p" name="Thiosulfate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdca_p" name="tetradecanoate (n-C14:0)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttdcea_p" name="tetradecenoate (n-C14:1)" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>CHARGE: -1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ttrcyc_p" name="tetracycline" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H24N2O8</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tungs_p" name="tungstate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tym_p" name="Tyramine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>CHARGE: 1</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tyr_DASH_L_p" name="L-Tyrosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_tyrp_p" name="Phosphotyrosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uLa4n_p" name="undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H100N1O7P1</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uacgam_p" name="UDP-N-acetyl-D-glucosamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udcpdp_p" name="Undecaprenyl diphosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O7P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udcpp_p" name="Undecaprenyl phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O4P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpacgal_p" name="UDP-N-acetyl-D-galactosamine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpg_p" name="UDPglucose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpgal_p" name="UDPgalactose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_udpglcur_p" name="UDP-D-glucuronate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ump_p" name="UMP" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_unagamuf_p" name="Undecaprenyl-diphospho N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4,6-dideoxy-D-galactose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H126N3O22P2</p>
+ <p>CHARGE: -3</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_ura_p" name="Uracil" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_urea_p" name="Urea" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_uri_p" name="Uridine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_val_DASH_L_p" name="L-Valine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xan_p" name="Xanthine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xmp_p" name="Xanthosine 5'-phosphate" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>CHARGE: -2</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xtsn_p" name="Xanthosine" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xyl_DASH_D_p" name="D-Xylose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_xylu_DASH_L_p" name="L-Xylulose" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHARGE: 0</p>
+ </body>
+ </notes>
+ </species>
+ <species id="M_zn2_p" name="Zinc" compartment="p">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>CHARGE: 2</p>
+ </body>
+ </notes>
+ </species>
+ </listOfSpecies>
+ <listOfReactions>
+ <reaction id="R_DM_4CRSOL" name="Sink needed to allow p-Cresol to leave system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4crsol_c"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_5DRIB" name="Sink needed to allow 5'-deoxyribose to leave system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5drib_c"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_AACALD" name="Sink needed to allow aminoacetaldehyde to leave system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aacald_c"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_AMOB" name="Sink needed to allow S-Adenosyl-4-methylthio-2-oxobutanoate to leave system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amob_c"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_MTHTHF" name="Sink needed to allow (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran to leave system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mththf_c"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_OXAM" name="Sink needed to allow oxamate to leave system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oxam_c"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Ec_biomass_iJO1366_WT_53p95M" name="E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_2fe2s_c" stoichiometry="2.5e-005"/>
+ <speciesReference species="M_4fe4s_c" stoichiometry="0.000248"/>
+ <speciesReference species="M_5mthf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_accoa_c" stoichiometry="0.000279"/>
+ <speciesReference species="M_adocbl_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_ala_DASH_L_c" stoichiometry="0.499149"/>
+ <speciesReference species="M_amet_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_arg_DASH_L_c" stoichiometry="0.28742"/>
+ <speciesReference species="M_asn_DASH_L_c" stoichiometry="0.234232"/>
+ <speciesReference species="M_asp_DASH_L_c" stoichiometry="0.234232"/>
+ <speciesReference species="M_atp_c" stoichiometry="54.119975"/>
+ <speciesReference species="M_bmocogdp_c" stoichiometry="0.000116"/>
+ <speciesReference species="M_btn_c" stoichiometry="2e-006"/>
+ <speciesReference species="M_ca2_c" stoichiometry="0.004952"/>
+ <speciesReference species="M_chor_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_cl_c" stoichiometry="0.004952"/>
+ <speciesReference species="M_coa_c" stoichiometry="0.000168"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="2.4e-005"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.129799"/>
+ <speciesReference species="M_cu2_c" stoichiometry="0.000674"/>
+ <speciesReference species="M_cys_DASH_L_c" stoichiometry="0.088988"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.024805"/>
+ <speciesReference species="M_dctp_c" stoichiometry="0.025612"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.025612"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.024805"/>
+ <speciesReference species="M_enter_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_fad_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_fe2_c" stoichiometry="0.006388"/>
+ <speciesReference species="M_fe3_c" stoichiometry="0.007428"/>
+ <speciesReference species="M_gln_DASH_L_c" stoichiometry="0.255712"/>
+ <speciesReference species="M_glu_DASH_L_c" stoichiometry="0.255712"/>
+ <speciesReference species="M_gly_c" stoichiometry="0.595297"/>
+ <speciesReference species="M_glycogen_c" stoichiometry="0.154187"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.209121"/>
+ <speciesReference species="M_h2o_c" stoichiometry="48.752916"/>
+ <speciesReference species="M_hemeO_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_his_DASH_L_c" stoichiometry="0.092056"/>
+ <speciesReference species="M_ile_DASH_L_c" stoichiometry="0.282306"/>
+ <speciesReference species="M_k_c" stoichiometry="0.18569"/>
+ <speciesReference species="M_leu_DASH_L_c" stoichiometry="0.437778"/>
+ <speciesReference species="M_lipopb_c" stoichiometry="3e-006"/>
+ <speciesReference species="M_lys_DASH_L_c" stoichiometry="0.333448"/>
+ <speciesReference species="M_malcoa_c" stoichiometry="3.1e-005"/>
+ <speciesReference species="M_met_DASH_L_c" stoichiometry="0.149336"/>
+ <speciesReference species="M_mg2_c" stoichiometry="0.008253"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_mn2_c" stoichiometry="0.000658"/>
+ <speciesReference species="M_mobd_c" stoichiometry="7e-006"/>
+ <speciesReference species="M_mococdp_c" stoichiometry="7e-006"/>
+ <speciesReference species="M_mocogdp_c" stoichiometry="7e-006"/>
+ <speciesReference species="M_mql8_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_nad_c" stoichiometry="0.001787"/>
+ <speciesReference species="M_nadh_c" stoichiometry="4.5e-005"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.000112"/>
+ <speciesReference species="M_nadph_c" stoichiometry="0.000335"/>
+ <speciesReference species="M_nh4_c" stoichiometry="0.012379"/>
+ <speciesReference species="M_ni2_c" stoichiometry="0.000307"/>
+ <speciesReference species="M_pe160_c" stoichiometry="0.012366"/>
+ <speciesReference species="M_pe161_c" stoichiometry="0.009618"/>
+ <speciesReference species="M_pe181_c" stoichiometry="0.004957"/>
+ <speciesReference species="M_pg160_c" stoichiometry="0.005707"/>
+ <speciesReference species="M_pg161_c" stoichiometry="0.004439"/>
+ <speciesReference species="M_pg181_c" stoichiometry="0.002288"/>
+ <speciesReference species="M_phe_DASH_L_c" stoichiometry="0.180021"/>
+ <speciesReference species="M_pheme_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_pro_DASH_L_c" stoichiometry="0.214798"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="0.03327"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_ser_DASH_L_c" stoichiometry="0.209684"/>
+ <speciesReference species="M_sheme_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_so4_c" stoichiometry="0.004126"/>
+ <speciesReference species="M_spmd_c" stoichiometry="0.006744"/>
+ <speciesReference species="M_succoa_c" stoichiometry="9.8e-005"/>
+ <speciesReference species="M_thf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_thr_DASH_L_c" stoichiometry="0.246506"/>
+ <speciesReference species="M_trp_DASH_L_c" stoichiometry="0.055234"/>
+ <speciesReference species="M_tyr_DASH_L_c" stoichiometry="0.133993"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="5.5e-005"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.140101"/>
+ <speciesReference species="M_val_DASH_L_c" stoichiometry="0.411184"/>
+ <speciesReference species="M_zn2_c" stoichiometry="0.000324"/>
+ <speciesReference species="M_colipa_e" stoichiometry="0.008151"/>
+ <speciesReference species="M_clpn160_p" stoichiometry="0.002944"/>
+ <speciesReference species="M_clpn161_p" stoichiometry="0.00229"/>
+ <speciesReference species="M_clpn181_p" stoichiometry="0.00118"/>
+ <speciesReference species="M_murein3p3p_p" stoichiometry="0.001345"/>
+ <speciesReference species="M_murein3px4p_p" stoichiometry="0.000605"/>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="0.005381"/>
+ <speciesReference species="M_murein4px4p_p" stoichiometry="0.005448"/>
+ <speciesReference species="M_murein4px4px4p_p" stoichiometry="0.000673"/>
+ <speciesReference species="M_pe160_p" stoichiometry="0.031798"/>
+ <speciesReference species="M_pe161_p" stoichiometry="0.024732"/>
+ <speciesReference species="M_pe181_p" stoichiometry="0.012747"/>
+ <speciesReference species="M_pg160_p" stoichiometry="0.004892"/>
+ <speciesReference species="M_pg161_p" stoichiometry="0.003805"/>
+ <speciesReference species="M_pg181_p" stoichiometry="0.001961"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="53.95"/>
+ <speciesReference species="M_h_c" stoichiometry="53.95"/>
+ <speciesReference species="M_pi_c" stoichiometry="53.945874"/>
+ <speciesReference species="M_ppi_c" stoichiometry="0.749831"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Ec_biomass_iJO1366_core_53p95M" name="E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_2fe2s_c" stoichiometry="2.6e-005"/>
+ <speciesReference species="M_2ohph_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_4fe4s_c" stoichiometry="0.00026"/>
+ <speciesReference species="M_ala_DASH_L_c" stoichiometry="0.513689"/>
+ <speciesReference species="M_amet_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_arg_DASH_L_c" stoichiometry="0.295792"/>
+ <speciesReference species="M_asn_DASH_L_c" stoichiometry="0.241055"/>
+ <speciesReference species="M_asp_DASH_L_c" stoichiometry="0.241055"/>
+ <speciesReference species="M_atp_c" stoichiometry="54.124831"/>
+ <speciesReference species="M_bmocogdp_c" stoichiometry="0.000122"/>
+ <speciesReference species="M_btn_c" stoichiometry="2e-006"/>
+ <speciesReference species="M_ca2_c" stoichiometry="0.005205"/>
+ <speciesReference species="M_cl_c" stoichiometry="0.005205"/>
+ <speciesReference species="M_coa_c" stoichiometry="0.000576"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="2.5e-005"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.133508"/>
+ <speciesReference species="M_cu2_c" stoichiometry="0.000709"/>
+ <speciesReference species="M_cys_DASH_L_c" stoichiometry="0.09158"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.026166"/>
+ <speciesReference species="M_dctp_c" stoichiometry="0.027017"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.027017"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.026166"/>
+ <speciesReference species="M_fad_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_fe2_c" stoichiometry="0.006715"/>
+ <speciesReference species="M_fe3_c" stoichiometry="0.007808"/>
+ <speciesReference species="M_gln_DASH_L_c" stoichiometry="0.26316"/>
+ <speciesReference species="M_glu_DASH_L_c" stoichiometry="0.26316"/>
+ <speciesReference species="M_gly_c" stoichiometry="0.612638"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.215096"/>
+ <speciesReference species="M_h2o_c" stoichiometry="48.601527"/>
+ <speciesReference species="M_his_DASH_L_c" stoichiometry="0.094738"/>
+ <speciesReference species="M_ile_DASH_L_c" stoichiometry="0.290529"/>
+ <speciesReference species="M_k_c" stoichiometry="0.195193"/>
+ <speciesReference species="M_leu_DASH_L_c" stoichiometry="0.450531"/>
+ <speciesReference species="M_lys_DASH_L_c" stoichiometry="0.343161"/>
+ <speciesReference species="M_met_DASH_L_c" stoichiometry="0.153686"/>
+ <speciesReference species="M_mg2_c" stoichiometry="0.008675"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_mn2_c" stoichiometry="0.000691"/>
+ <speciesReference species="M_mobd_c" stoichiometry="7e-006"/>
+ <speciesReference species="M_nad_c" stoichiometry="0.001831"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.000447"/>
+ <speciesReference species="M_nh4_c" stoichiometry="0.013013"/>
+ <speciesReference species="M_ni2_c" stoichiometry="0.000323"/>
+ <speciesReference species="M_pe160_c" stoichiometry="0.017868"/>
+ <speciesReference species="M_pe161_c" stoichiometry="0.054154"/>
+ <speciesReference species="M_phe_DASH_L_c" stoichiometry="0.185265"/>
+ <speciesReference species="M_pheme_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_pro_DASH_L_c" stoichiometry="0.221055"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_ser_DASH_L_c" stoichiometry="0.215792"/>
+ <speciesReference species="M_sheme_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_so4_c" stoichiometry="0.004338"/>
+ <speciesReference species="M_thf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_thr_DASH_L_c" stoichiometry="0.253687"/>
+ <speciesReference species="M_trp_DASH_L_c" stoichiometry="0.056843"/>
+ <speciesReference species="M_tyr_DASH_L_c" stoichiometry="0.137896"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="5.5e-005"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.144104"/>
+ <speciesReference species="M_val_DASH_L_c" stoichiometry="0.423162"/>
+ <speciesReference species="M_zn2_c" stoichiometry="0.000341"/>
+ <speciesReference species="M_kdo2lipid4_e" stoichiometry="0.019456"/>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="0.013894"/>
+ <speciesReference species="M_pe160_p" stoichiometry="0.045946"/>
+ <speciesReference species="M_pe161_p" stoichiometry="0.02106"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="53.95"/>
+ <speciesReference species="M_h_c" stoichiometry="53.95"/>
+ <speciesReference species="M_pi_c" stoichiometry="53.945662"/>
+ <speciesReference species="M_ppi_c" stoichiometry="0.773903"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="1" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_12ppd_DASH_R_LPAREN_e_RPAREN_" name="(R)-Propane-1,2-diol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd_DASH_R_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_12ppd_DASH_S_LPAREN_e_RPAREN_" name="(S)-Propane-1,2-diol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd_DASH_S_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_14glucan_LPAREN_e_RPAREN_" name="1,4-alpha-D-glucan exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_15dap_LPAREN_e_RPAREN_" name="1,5-Diaminopentane exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23camp_LPAREN_e_RPAREN_" name="2',3'-Cyclic AMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23camp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23ccmp_LPAREN_e_RPAREN_" name="2',3'-Cyclic CMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23cgmp_LPAREN_e_RPAREN_" name="2',3'-Cyclic GMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cgmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23cump_LPAREN_e_RPAREN_" name="2',3'-Cyclic UMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23dappa_LPAREN_e_RPAREN_" name="2,3-diaminopropionate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_26dap_DASH_M_LPAREN_e_RPAREN_" name="meso-2,6-Diaminoheptanedioate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap_DASH_M_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_2ddglcn_LPAREN_e_RPAREN_" name="2-Dehydro-3-deoxy-D-gluconate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_34dhpac_LPAREN_e_RPAREN_" name="3,4-Dihydroxyphenylacetaldehyde exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpac_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3amp_LPAREN_e_RPAREN_" name="3'-AMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3cmp_LPAREN_e_RPAREN_" name="3'-cmp exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3gmp_LPAREN_e_RPAREN_" name="3'-GMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3hcinnm_LPAREN_e_RPAREN_" name="3-hydroxycinnamic acid exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3hpp_LPAREN_e_RPAREN_" name="3-Hydroxypropanoate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3hpppn_LPAREN_e_RPAREN_" name="3-(3-hydroxy-phenyl)propionate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3ump_LPAREN_e_RPAREN_" name="3'-UMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_4abut_LPAREN_e_RPAREN_" name="4-Aminobutanoate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_4hoxpacd_LPAREN_e_RPAREN_" name="4-Hydroxyphenylacetaldehyde exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpacd_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_5dglcn_LPAREN_e_RPAREN_" name="5-Dehydro-D-gluconate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_5mtr_LPAREN_e_RPAREN_" name="5-Methylthio-D-ribose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mtr_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_LalaDglu_LPAREN_e_RPAREN_" name="L-alanine-D-glutamate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDglu_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_LalaDgluMdap_LPAREN_e_RPAREN_" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_LalaDgluMdapDala_LPAREN_e_RPAREN_" name="L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_LalaLglu_LPAREN_e_RPAREN_" name="L-alanine-L-glutamate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaLglu_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ac_LPAREN_e_RPAREN_" name="Acetate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acac_LPAREN_e_RPAREN_" name="Acetoacetate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acald_LPAREN_e_RPAREN_" name="Acetaldehyde exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgal_LPAREN_e_RPAREN_" name="N-Acetyl-D-galactosamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgal1p_LPAREN_e_RPAREN_" name="N-Acetyl-D-galactosamine 1-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgam_LPAREN_e_RPAREN_" name="N-Acetyl-D-glucosamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgam1p_LPAREN_e_RPAREN_" name="N-Acetyl-D-glucosamine 1-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acmana_LPAREN_e_RPAREN_" name="N-Acetyl-D-mannosamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acmum_LPAREN_e_RPAREN_" name="N-Acetylmuramate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acnam_LPAREN_e_RPAREN_" name="N-Acetylneuraminate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acolipa_LPAREN_e_RPAREN_" name="4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acolipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acser_LPAREN_e_RPAREN_" name="O-Acetyl-L-serine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ade_LPAREN_e_RPAREN_" name="Adenine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_adn_LPAREN_e_RPAREN_" name="Adenosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_adocbl_LPAREN_e_RPAREN_" name="Adenosylcobalamin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbl_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ag_LPAREN_e_RPAREN_" name="silver exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ag_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_agm_LPAREN_e_RPAREN_" name="Agmatine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_akg_LPAREN_e_RPAREN_" name="2-Oxoglutarate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ala_DASH_B_LPAREN_e_RPAREN_" name="beta-Alanine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_B_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ala_DASH_D_LPAREN_e_RPAREN_" name="D-Alanine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ala_DASH_L_LPAREN_e_RPAREN_" name="L-Alanine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_alaala_LPAREN_e_RPAREN_" name="D-Alanyl-D-alanine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_all_DASH_D_LPAREN_e_RPAREN_" name="D-Allose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_alltn_LPAREN_e_RPAREN_" name="Allantoin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_amp_LPAREN_e_RPAREN_" name="AMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_anhgm_LPAREN_e_RPAREN_" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arab_DASH_L_LPAREN_e_RPAREN_" name="L-Arabinose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arbt_LPAREN_e_RPAREN_" name="Arbutin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arbtn_LPAREN_e_RPAREN_" name="aerobactin minus Fe3 exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arbtn_DASH_fe3_LPAREN_e_RPAREN_" name="Aerobactin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_DASH_fe3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arg_DASH_L_LPAREN_e_RPAREN_" name="L-Arginine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ascb_DASH_L_LPAREN_e_RPAREN_" name="L-Ascorbate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_asn_DASH_L_LPAREN_e_RPAREN_" name="L-Asparagine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_aso3_LPAREN_e_RPAREN_" name="arsenite exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_asp_DASH_L_LPAREN_e_RPAREN_" name="L-Aspartate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_btn_LPAREN_e_RPAREN_" name="Biotin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_but_LPAREN_e_RPAREN_" name="Butyrate (n-C4:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_butso3_LPAREN_e_RPAREN_" name="butanesulfonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butso3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ca2_LPAREN_e_RPAREN_" name="Calcium exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cbi_LPAREN_e_RPAREN_" name="Cobinamide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cbl1_LPAREN_e_RPAREN_" name="Cob(I)alamin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbl1_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.01" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cd2_LPAREN_e_RPAREN_" name="Cadmium exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cgly_LPAREN_e_RPAREN_" name="Cys-Gly exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_chol_LPAREN_e_RPAREN_" name="Choline exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_chtbs_LPAREN_e_RPAREN_" name="chitobiose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chtbs_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cit_LPAREN_e_RPAREN_" name="Citrate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cl_LPAREN_e_RPAREN_" name="Chloride exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cl_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cm_LPAREN_e_RPAREN_" name="Chloramphenicol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cm_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cmp_LPAREN_e_RPAREN_" name="CMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_co2_LPAREN_e_RPAREN_" name="CO2 exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cobalt2_LPAREN_e_RPAREN_" name="Co2+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_colipa_LPAREN_e_RPAREN_" name="core oligosaccharide lipid A exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_colipap_LPAREN_e_RPAREN_" name="core oligosaccharide lipid A diphosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipap_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cpgn_LPAREN_e_RPAREN_" name="coprogen exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cpgn_DASH_un_LPAREN_e_RPAREN_" name="coprogen unloaded (no Fe(III)) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_DASH_un_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_crn_LPAREN_e_RPAREN_" name="L-Carnitine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_crn_DASH_D_LPAREN_e_RPAREN_" name="D-carnitine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_csn_LPAREN_e_RPAREN_" name="Cytosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cu_LPAREN_e_RPAREN_" name="Cu+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cu2_LPAREN_e_RPAREN_" name="Cu2+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cyan_LPAREN_e_RPAREN_" name="Hydrogen cyanide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cynt_LPAREN_e_RPAREN_" name="Cyanate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cys_DASH_D_LPAREN_e_RPAREN_" name="D-Cysteine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cys_DASH_L_LPAREN_e_RPAREN_" name="L-Cysteine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cytd_LPAREN_e_RPAREN_" name="Cytidine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dad_DASH_2_LPAREN_e_RPAREN_" name="Deoxyadenosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad_DASH_2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_damp_LPAREN_e_RPAREN_" name="dAMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dca_LPAREN_e_RPAREN_" name="Decanoate (n-C10:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dca_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dcmp_LPAREN_e_RPAREN_" name="dCMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dcyt_LPAREN_e_RPAREN_" name="Deoxycytidine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ddca_LPAREN_e_RPAREN_" name="Dodecanoate (n-C12:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dgmp_LPAREN_e_RPAREN_" name="dGMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dgsn_LPAREN_e_RPAREN_" name="Deoxyguanosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dha_LPAREN_e_RPAREN_" name="Dihydroxyacetone exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dimp_LPAREN_e_RPAREN_" name="dIMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_din_LPAREN_e_RPAREN_" name="Deoxyinosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dms_LPAREN_e_RPAREN_" name="Dimethyl sulfide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dms_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dmso_LPAREN_e_RPAREN_" name="Dimethyl sulfoxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dopa_LPAREN_e_RPAREN_" name="Dopamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dopa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_doxrbcn_LPAREN_e_RPAREN_" name="doxorubicin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_doxrbcn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dtmp_LPAREN_e_RPAREN_" name="dTMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dump_LPAREN_e_RPAREN_" name="dUMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_duri_LPAREN_e_RPAREN_" name="Deoxyuridine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_eca4colipa_LPAREN_e_RPAREN_" name="(enterobacterial common antigen)x4 core oligosaccharide lipid A exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca4colipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_enlipa_LPAREN_e_RPAREN_" name="phosphoethanolamine KDO(2)-lipid (A) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enlipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_enter_LPAREN_e_RPAREN_" name="Enterochelin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_etha_LPAREN_e_RPAREN_" name="Ethanolamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ethso3_LPAREN_e_RPAREN_" name="ethanesulfonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ethso3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_etoh_LPAREN_e_RPAREN_" name="Ethanol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_f6p_LPAREN_e_RPAREN_" name="D-fructose 6-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fald_LPAREN_e_RPAREN_" name="Formaldehyde exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe2_LPAREN_e_RPAREN_" name="Fe2+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3_LPAREN_e_RPAREN_" name="Fe3+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3dcit_LPAREN_e_RPAREN_" name="Fe(III)dicitrate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dcit_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3dhbzs_LPAREN_e_RPAREN_" name="ferric 2,3-dihydroxybenzoylserine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3hox_LPAREN_e_RPAREN_" name="Fe(III)hydroxamate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3hox_DASH_un_LPAREN_e_RPAREN_" name="Fe(III)hydoxamate, unloaded exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_DASH_un_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fecrm_LPAREN_e_RPAREN_" name="Ferrichrome exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fecrm_DASH_un_LPAREN_e_RPAREN_" name="Ferrichrome minus Fe(III) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_DASH_un_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feenter_LPAREN_e_RPAREN_" name="Fe-enterobactin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feoxam_LPAREN_e_RPAREN_" name="ferroxamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feoxam_DASH_un_LPAREN_e_RPAREN_" name="ferroxamine minus Fe(3) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_DASH_un_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_for_LPAREN_e_RPAREN_" name="Formate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fru_LPAREN_e_RPAREN_" name="D-Fructose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_frulys_LPAREN_e_RPAREN_" name="fructoselysine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulys_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fruur_LPAREN_e_RPAREN_" name="D-Fructuronate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fruur_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fuc_DASH_L_LPAREN_e_RPAREN_" name="L-Fucose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fum_LPAREN_e_RPAREN_" name="Fumarate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fusa_LPAREN_e_RPAREN_" name="fusidic acid exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fusa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g1p_LPAREN_e_RPAREN_" name="D-Glucose 1-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pc_LPAREN_e_RPAREN_" name="sn-Glycero-3-phosphocholine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pe_LPAREN_e_RPAREN_" name="sn-Glycero-3-phosphoethanolamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pg_LPAREN_e_RPAREN_" name="Glycerophosphoglycerol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pi_LPAREN_e_RPAREN_" name="sn-Glycero-3-phospho-1-inositol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3ps_LPAREN_e_RPAREN_" name="Glycerophosphoserine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g6p_LPAREN_e_RPAREN_" name="D-Glucose 6-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gal_LPAREN_e_RPAREN_" name="D-Galactose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gal_DASH_bD_LPAREN_e_RPAREN_" name="beta D-Galactose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_DASH_bD_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gal1p_LPAREN_e_RPAREN_" name="alpha-D-Galactose 1-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galct_DASH_D_LPAREN_e_RPAREN_" name="D-Galactarate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galctn_DASH_D_LPAREN_e_RPAREN_" name="D-Galactonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galctn_DASH_L_LPAREN_e_RPAREN_" name="L-Galactonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galt_LPAREN_e_RPAREN_" name="Galactitol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galur_LPAREN_e_RPAREN_" name="D-Galacturonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gam_LPAREN_e_RPAREN_" name="D-Glucosamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gam6p_LPAREN_e_RPAREN_" name="D-Glucosamine 6-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gbbtn_LPAREN_e_RPAREN_" name="gamma-butyrobetaine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gdp_LPAREN_e_RPAREN_" name="GDP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glc_LPAREN_e_RPAREN_" name="D-Glucose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-10" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcn_LPAREN_e_RPAREN_" name="D-Gluconate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcr_LPAREN_e_RPAREN_" name="D-Glucarate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcur_LPAREN_e_RPAREN_" name="D-Glucuronate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcur1p_LPAREN_e_RPAREN_" name="D-Glucuronate 1-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gln_DASH_L_LPAREN_e_RPAREN_" name="L-Glutamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glu_DASH_L_LPAREN_e_RPAREN_" name="L-Glutamate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gly_LPAREN_e_RPAREN_" name="Glycine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyald_LPAREN_e_RPAREN_" name="D-Glyceraldehyde exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyb_LPAREN_e_RPAREN_" name="Glycine betaine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc_LPAREN_e_RPAREN_" name="Glycerol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc_DASH_R_LPAREN_e_RPAREN_" name="(R)-Glycerate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_DASH_R_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc2p_LPAREN_e_RPAREN_" name="Glycerol 2-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc3p_LPAREN_e_RPAREN_" name="Glycerol 3-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyclt_LPAREN_e_RPAREN_" name="Glycolate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gmp_LPAREN_e_RPAREN_" name="GMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gsn_LPAREN_e_RPAREN_" name="Guanosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gthox_LPAREN_e_RPAREN_" name="Oxidized glutathione exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gthrd_LPAREN_e_RPAREN_" name="Reduced glutathione exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gtp_LPAREN_e_RPAREN_" name="GTP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gua_LPAREN_e_RPAREN_" name="Guanine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h_LPAREN_e_RPAREN_" name="H+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2_LPAREN_e_RPAREN_" name="H2 exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2o_LPAREN_e_RPAREN_" name="H2O exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2o2_LPAREN_e_RPAREN_" name="Hydrogen peroxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2s_LPAREN_e_RPAREN_" name="Hydrogen sulfide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hacolipa_LPAREN_e_RPAREN_" name="hepta-acylated core oligosaccharide lipid A (E. coli) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hacolipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_halipa_LPAREN_e_RPAREN_" name="hepta-acylated KDO(2)-lipid (A) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_halipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hdca_LPAREN_e_RPAREN_" name="Hexadecanoate (n-C16:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hdcea_LPAREN_e_RPAREN_" name="hexadecenoate (n-C16:1) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcea_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hg2_LPAREN_e_RPAREN_" name="Hg2+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hg2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_his_DASH_L_LPAREN_e_RPAREN_" name="L-Histidine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hom_DASH_L_LPAREN_e_RPAREN_" name="L-Homoserine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hxa_LPAREN_e_RPAREN_" name="Hexanoate (n-C6:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hxan_LPAREN_e_RPAREN_" name="Hypoxanthine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_idon_DASH_L_LPAREN_e_RPAREN_" name="L-Idonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_idon_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ile_DASH_L_LPAREN_e_RPAREN_" name="L-Isoleucine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_imp_LPAREN_e_RPAREN_" name="IMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_indole_LPAREN_e_RPAREN_" name="Indole exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_inost_LPAREN_e_RPAREN_" name="myo-Inositol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ins_LPAREN_e_RPAREN_" name="Inosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_isetac_LPAREN_e_RPAREN_" name="Isethionic acid exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_isetac_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_k_LPAREN_e_RPAREN_" name="K+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_kdo2lipid4_LPAREN_e_RPAREN_" name="KDO(2)-lipid IV(A) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lac_DASH_D_LPAREN_e_RPAREN_" name="D-lactate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lac_DASH_L_LPAREN_e_RPAREN_" name="L-Lactate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lcts_LPAREN_e_RPAREN_" name="Lactose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lcts_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_leu_DASH_L_LPAREN_e_RPAREN_" name="L-Leucine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lipa_LPAREN_e_RPAREN_" name="KDO(2)-lipid (A) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lipa_cold_LPAREN_e_RPAREN_" name="cold adapted KDO(2)-lipid (A) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_cold_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lipoate_LPAREN_e_RPAREN_" name="Lipoate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipoate_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lys_DASH_L_LPAREN_e_RPAREN_" name="L-Lysine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lyx_DASH_L_LPAREN_e_RPAREN_" name="L-Lyxose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mal_DASH_D_LPAREN_e_RPAREN_" name="D-Malate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mal_DASH_L_LPAREN_e_RPAREN_" name="L-Malate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_malt_LPAREN_e_RPAREN_" name="Maltose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_malthx_LPAREN_e_RPAREN_" name="Maltohexaose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_maltpt_LPAREN_e_RPAREN_" name="Maltopentaose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_malttr_LPAREN_e_RPAREN_" name="Maltotriose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_maltttr_LPAREN_e_RPAREN_" name="Maltotetraose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_man_LPAREN_e_RPAREN_" name="D-Mannose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_man6p_LPAREN_e_RPAREN_" name="D-Mannose 6-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_manglyc_LPAREN_e_RPAREN_" name="2(alpha-D-Mannosyl)-D-glycerate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_manglyc_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_melib_LPAREN_e_RPAREN_" name="Melibiose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_meoh_LPAREN_e_RPAREN_" name="methanol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_meoh_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_met_DASH_D_LPAREN_e_RPAREN_" name="D-Methionine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_met_DASH_L_LPAREN_e_RPAREN_" name="L-Methionine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_metsox_DASH_R_DASH_L_LPAREN_e_RPAREN_" name="L-methionine-R-sulfoxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox_DASH_R_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_metsox_DASH_S_DASH_L_LPAREN_e_RPAREN_" name="L-Methionine S-oxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox_DASH_S_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mg2_LPAREN_e_RPAREN_" name="Mg exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mincyc_LPAREN_e_RPAREN_" name="minocycline exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mincyc_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_minohp_LPAREN_e_RPAREN_" name="myo-Inositol hexakisphosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_minohp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mmet_LPAREN_e_RPAREN_" name="S-Methyl-L-methionine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmet_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mn2_LPAREN_e_RPAREN_" name="Mn2+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mnl_LPAREN_e_RPAREN_" name="D-Mannitol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mobd_LPAREN_e_RPAREN_" name="Molybdate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mobd_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mso3_LPAREN_e_RPAREN_" name="methanesulfonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mso3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_n2o_LPAREN_e_RPAREN_" name="Nitrous oxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_na1_LPAREN_e_RPAREN_" name="Sodium exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_nac_LPAREN_e_RPAREN_" name="Nicotinate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_nh4_LPAREN_e_RPAREN_" name="Ammonia exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ni2_LPAREN_e_RPAREN_" name="Ni2+ exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_nmn_LPAREN_e_RPAREN_" name="NMN exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_no_LPAREN_e_RPAREN_" name="Nitric oxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_no2_LPAREN_e_RPAREN_" name="Nitrite exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_no3_LPAREN_e_RPAREN_" name="Nitrate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_novbcn_LPAREN_e_RPAREN_" name="novobiocin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_novbcn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_o16a4colipa_LPAREN_e_RPAREN_" name="(O16 antigen)x4 core oligosaccharide lipid A exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o16a4colipa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_o2_LPAREN_e_RPAREN_" name="O2 exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_o2s_LPAREN_e_RPAREN_" name="Superoxide anion exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ocdca_LPAREN_e_RPAREN_" name="octadecanoate (n-C18:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ocdcea_LPAREN_e_RPAREN_" name="octadecenoate (n-C18:1) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_octa_LPAREN_e_RPAREN_" name="octanoate (n-C8:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_orn_LPAREN_e_RPAREN_" name="Ornithine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_orot_LPAREN_e_RPAREN_" name="Orotate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pacald_LPAREN_e_RPAREN_" name="Phenylacetaldehyde exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pacald_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_peamn_LPAREN_e_RPAREN_" name="Phenethylamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_peamn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_phe_DASH_L_LPAREN_e_RPAREN_" name="L-Phenylalanine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pheme_LPAREN_e_RPAREN_" name="Protoheme exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pi_LPAREN_e_RPAREN_" name="Phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pnto_DASH_R_LPAREN_e_RPAREN_" name="(R)-Pantothenate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto_DASH_R_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ppa_LPAREN_e_RPAREN_" name="Propionate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ppal_LPAREN_e_RPAREN_" name="Propanal exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pppn_LPAREN_e_RPAREN_" name="Phenylpropanoate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ppt_LPAREN_e_RPAREN_" name="Phosphonate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pro_DASH_L_LPAREN_e_RPAREN_" name="L-Proline exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_progly_LPAREN_e_RPAREN_" name="L-Prolinylglycine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_psclys_LPAREN_e_RPAREN_" name="psicoselysine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_psclys_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pser_DASH_L_LPAREN_e_RPAREN_" name="O-Phospho-L-serine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pser_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ptrc_LPAREN_e_RPAREN_" name="Putrescine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pydam_LPAREN_e_RPAREN_" name="Pyridoxamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydam_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pydx_LPAREN_e_RPAREN_" name="Pyridoxal exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pydxn_LPAREN_e_RPAREN_" name="Pyridoxine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pyr_LPAREN_e_RPAREN_" name="Pyruvate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_quin_LPAREN_e_RPAREN_" name="Quinate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_quin_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_r5p_LPAREN_e_RPAREN_" name="alpha-D-Ribose 5-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_rfamp_LPAREN_e_RPAREN_" name="rifampin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rfamp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_rib_DASH_D_LPAREN_e_RPAREN_" name="D-Ribose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rib_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_rmn_LPAREN_e_RPAREN_" name="L-Rhamnose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_sbt_DASH_D_LPAREN_e_RPAREN_" name="D-Sorbitol exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_sel_LPAREN_e_RPAREN_" name="Selenate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sel_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ser_DASH_D_LPAREN_e_RPAREN_" name="D-Serine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ser_DASH_L_LPAREN_e_RPAREN_" name="L-Serine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_skm_LPAREN_e_RPAREN_" name="Shikimate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_skm_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_slnt_LPAREN_e_RPAREN_" name="selenite exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_slnt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_so2_LPAREN_e_RPAREN_" name="sulfur dioxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_so3_LPAREN_e_RPAREN_" name="Sulfite exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so3_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_so4_LPAREN_e_RPAREN_" name="Sulfate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_spmd_LPAREN_e_RPAREN_" name="Spermidine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_succ_LPAREN_e_RPAREN_" name="Succinate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_sucr_LPAREN_e_RPAREN_" name="Sucrose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucr_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_sulfac_LPAREN_e_RPAREN_" name="sulfoacetate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sulfac_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tartr_DASH_D_LPAREN_e_RPAREN_" name="D-tartrate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tartr_DASH_L_LPAREN_e_RPAREN_" name="L-tartrate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_taur_LPAREN_e_RPAREN_" name="Taurine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_taur_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tcynt_LPAREN_e_RPAREN_" name="Thiocyanate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcynt_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thm_LPAREN_e_RPAREN_" name="Thiamin exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thr_DASH_L_LPAREN_e_RPAREN_" name="L-Threonine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thrp_LPAREN_e_RPAREN_" name="L-Threonine O-3-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thym_LPAREN_e_RPAREN_" name="Thymine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thymd_LPAREN_e_RPAREN_" name="Thymidine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tma_LPAREN_e_RPAREN_" name="Trimethylamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tma_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tmao_LPAREN_e_RPAREN_" name="Trimethylamine N-oxide exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmao_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tre_LPAREN_e_RPAREN_" name="Trehalose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_trp_DASH_L_LPAREN_e_RPAREN_" name="L-Tryptophan exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tsul_LPAREN_e_RPAREN_" name="Thiosulfate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ttdca_LPAREN_e_RPAREN_" name="tetradecanoate (n-C14:0) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ttdcea_LPAREN_e_RPAREN_" name="tetradecenoate (n-C14:1) exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ttrcyc_LPAREN_e_RPAREN_" name="tetracycline exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttrcyc_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tungs_LPAREN_e_RPAREN_" name="tungstate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tungs_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tym_LPAREN_e_RPAREN_" name="Tyramine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tym_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tyr_DASH_L_LPAREN_e_RPAREN_" name="L-Tyrosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tyrp_LPAREN_e_RPAREN_" name="Phosphotyrosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_uacgam_LPAREN_e_RPAREN_" name="UDP-N-acetyl-D-glucosamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpacgal_LPAREN_e_RPAREN_" name="UDP-N-acetyl-D-galactosamine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpacgal_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpg_LPAREN_e_RPAREN_" name="UDPglucose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpgal_LPAREN_e_RPAREN_" name="UDPgalactose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpglcur_LPAREN_e_RPAREN_" name="UDP-D-glucuronate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpglcur_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ump_LPAREN_e_RPAREN_" name="UMP exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ura_LPAREN_e_RPAREN_" name="Uracil exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_urea_LPAREN_e_RPAREN_" name="Urea exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_uri_LPAREN_e_RPAREN_" name="Uridine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_val_DASH_L_LPAREN_e_RPAREN_" name="L-Valine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xan_LPAREN_e_RPAREN_" name="Xanthine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xmp_LPAREN_e_RPAREN_" name="Xanthosine 5'-phosphate exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xtsn_LPAREN_e_RPAREN_" name="Xanthosine exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xyl_DASH_D_LPAREN_e_RPAREN_" name="D-Xylose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl_DASH_D_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xylu_DASH_L_LPAREN_e_RPAREN_" name="L-Xylulose exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu_DASH_L_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_zn2_LPAREN_e_RPAREN_" name="Zinc exchange">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_e"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR120tipp" name="1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR140tipp" name="1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR141tipp" name="1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR160tipp" name="1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR161tipp" name="1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR180tipp" name="1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR181tipp" name="1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDRtex" name="(R)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd_DASH_R_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd_DASH_R_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDRtpp" name="(R)-Propane-1,2-diol facilitated transport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd_DASH_R_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd_DASH_R_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDStex" name="(S)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd_DASH_S_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd_DASH_S_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDStpp" name="(S)-Propane-1,2-diol facilitated transport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd_DASH_S_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd_DASH_S_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_14GLUCANabcpp" name="1,4-alpha-D-glucan transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4034 and b4033 and b4032 and b4035)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_14glucan_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_14glucan_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_14GLUCANtexi" name="1,4-alpha-D-glucan transport via diffusion (extracellular to periplasm) irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4036</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_14glucan_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CAMPtex" name="23cAMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23camp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23camp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CCMPtex" name="23cCMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23ccmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CGMPtex" name="23cGMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cgmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cgmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CUMPtex" name="23cUMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23DAPPAt2pp" name="2,3-diaminopropionate transport in via proton symport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dappa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23DAPPAtex" name="2,3-diaminopropionate transport via diffusion">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dappa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE2pp" name="2',3'-cyclic-nucleotide phosphodiesterase (UMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.4.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ump_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE4pp" name="2',3'-cyclic-nucleotide phosphodiesterase (CMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.4.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3cmp_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE7pp" name="2',3'-cyclic-nucleotide phosphodiesterase (AMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.4.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23camp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amp_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE9pp" name="2',3'-cyclic-nucleotide phosphodiesterase (GMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.4.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cgmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3gmp_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_26DAHtex" name="meso-2,6-Diaminoheptanedioate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap_DASH_M_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap_DASH_M_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA120tipp" name="2-Acyl-sn-glycero-3-phosphatidate (n-C12:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddecg3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddecg3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA140tipp" name="2-Acyl-sn-glycero-3-phosphatidate (n-C14:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdecg3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdecg3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA141tipp" name="2-Acyl-sn-glycero-3-phosphatidate (n-C14:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdec7eg3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdec7eg3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA160tipp" name="2-Acyl-sn-glycero-3-phosphatidate (n-C16:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdecg3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdecg3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA161tipp" name="2-Acyl-sn-glycero-3-phosphatidate (n-C16:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdec9eg3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdec9eg3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA180tipp" name="2-Acyl-sn-glycero-3-phosphatidate (n-C18:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odecg3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odecg3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA181tipp" name="2-Acyl-sn-glycero-3-phosphatidate (n-C18:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odec11eg3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odec11eg3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE120tipp" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE140tipp" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE141tipp" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE160tipp" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE161tipp" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE180tipp" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE181tipp" name="2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT120" name="2-acyl-glycerophospho-ethanolamine acyltransferase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ddca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pe120_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT140" name="2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pe140_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT141" name="2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe141_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pe141_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT160" name="2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe160_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pe160_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT161" name="2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe161_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pe161_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT180" name="2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ocdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pe180_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT181" name="2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe181_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ocdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pe181_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG120tipp" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG140tipp" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG141tipp" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG160tipp" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG161tipp" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG180tipp" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG181tipp" name="2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1) transporter via facilitated diffusion (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2835</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT120" name="2-acyl-glycerophospho-glycerol acyltransferase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ddca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pg120_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT140" name="2-acyl-glycerophospho-glycerol acyltransferase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pg140_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT141" name="2-acyl-glycerophospho-glycerol acyltransferase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pg141_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT160" name="2-acyl-glycerophospho-glycerol acyltransferase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pg160_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT161" name="2-acyl-glycerophospho-glycerol acyltransferase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg161_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pg161_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT180" name="2-acyl-glycerophospho-glycerol acyltransferase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg180_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ocdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pg180_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT181" name="2-acyl-glycerophospho-glycerol acyltransferase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2836</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg181_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ocdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pg181_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGULRGx" name="2-Dehydro-L-gulonate reductase to gluconate (NADH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3553</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhguln_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGULRGy" name="2-Dehydro-L-gulonate reductase to gluconate (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3553</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.215</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhguln_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGULRx" name="2-dehydro-L-gulonate reductase (NADH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3553</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhguln_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon_DASH_L_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGULRy" name="2-dehydro-L-gulonate reductase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3553</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhguln_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon_DASH_L_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2MAHMP" name="2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0446 or b1134)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mahmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ampm_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_34dhpactex" name="dihydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpac_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34dhpac_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3AMACHYD" name="3-aminoacrylate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1009</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amac_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_msa_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3AMPtex" name="3AMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3CMPtex" name="3CMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3cmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3GMPtex" name="3GMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3gmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD100" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.60</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hdecACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tdec2eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD120" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0180 or b0954)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddecACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tddec2eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD121" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0180 or b0954)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcddec5eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_t3c5ddeceACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD140" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hmrsACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tmrs2eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD141" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcmrs7eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_t3c7mrseACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD160" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpalmACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tpalm2eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD161" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0180 or b0954)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcpalm9eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_t3c9palmeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD180" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hoctaACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_toctd2eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD181" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.61</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcvac11eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_t3c11vaceACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD40" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C4:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.58</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3haACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but2eACP_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD60" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C6:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.58</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhexACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_thex2eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD80" name="3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0954 or b0180)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.58</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hoctACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_toct2eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HCINNMH" name="3-hydroxycinnamate hydroxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0347</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhcinnm_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HPPPNH" name="3-(3-hydroxy-phenyl)propionate hydroxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0347</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhpppn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HPPtex" name="3-hydroxypropionate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HPPtpp" name="3-hydroxypropionate transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpp_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3KGK" name="3-keto-L-gulonate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3580</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhguln_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhgulnp_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD2pp" name="3'-nucleotidase (UMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_uri_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD4pp" name="3'-nucleotidase (CMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD7pp" name="3'-nucleotidase (AMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD9pp" name="3'-nucleotidase (GMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4213</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR100" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3odecACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hdecACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR120" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oddecACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hddecACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR121" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ocddec5eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcddec5eACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR140" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3omrsACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hmrsACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR141" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ocmrs7eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcmrs7eACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR160" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3opalmACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpalmACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR161" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ocpalm9eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcpalm9eACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR180" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ooctdACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hoctaACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR181" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ocvac11eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcvac11eACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR40" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_actACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3haACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR60" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ohexACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hhexACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR80" name="3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ooctACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hoctACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS100" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C10:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2323 or b1095)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ <speciesReference species="M_ocACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3odecACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS120" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1095 or b2323)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcaACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3oddecACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS121" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2323</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdec3eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocddec5eACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS140" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2323 or b1095)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3omrsACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS141" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2323</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cddec5eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocmrs7eACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS160" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2323 or b1095)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3opalmACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS161" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2323</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocpalm9eACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS180" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1095 or b2323)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ooctdACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS181" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1095</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdeACP_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocvac11eACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS60" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1095 or b2323)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ohexACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS80" name="3-oxoacyl-[acyl-carrier-protein] synthase (n-C8:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2323 or b1095)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hexACP_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ooctACP_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OXCOAT" name="3-oxoadipyl-CoA thiolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1397</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_oxadpcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_succoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3PEPTabcpp" name="tripeptide (LalaDgluMdap) transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1329 and b1244 and b1245 and b1246 and b1247)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_LalaDgluMdap_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3PEPTtex" name="LalaDgluMdap (tripeptide) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3UMPtex" name="3UMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_42A12BOOXpp" name="4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1386</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 1.4.3.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dopa_p"/>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_o2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34dhpac_p"/>
+ <speciesReference species="M_h2o2_p"/>
+ <speciesReference species="M_nh4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HOXPACDtex" name="4-hydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpacd_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpacd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HTHRS" name="4-Hydroxy-L-threonine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0004</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_phthr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hthr_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PCP" name="tetrapeptide L,D-carboxypeptidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1192</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_c"/>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PCPpp" name="tetrapeptide L,D-carboxypeptidase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p"/>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PEPTabcpp" name="tetrapeptide (LalaDgluMdapDala) transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1243 and b1244 and b1245 and b1246 and b1247)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_LalaDgluMdapDala_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PEPTtex" name="LalaDgluMdapDala (pentapeptide) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DGLCNR" name="5-dehydro-D-gluconate reductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4266</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.69</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DGLCNt2rpp" name="5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4265</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DGLCNtex" name="5-Dehydro-D-gluconate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b2215 or b1377)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DOAN" name="5'-deoxyadenosine nuclosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0159</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad_DASH_5_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5drib_c"/>
+ <speciesReference species="M_ade_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5MTRtex" name="5-Methylthio-D-ribose transport via proton diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mtr_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mtr_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5MTRtpp" name="5-Methylthio-D-ribose transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mtr_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mtr_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_A5PISO" name="arabinose-5-phosphate isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3197 or b2708)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ara5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS1" name="acyl-[acyl-carrier-protein] synthetase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS2" name="acyl-[acyl-carrier-protein] synthetase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS3" name="acyl-[acyl-carrier-protein] synthetase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS4" name="acyl-[acyl-carrier-protein] synthetase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_hdeACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS5" name="acyl-[acyl-carrier-protein] synthetase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ocdcea_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_octeACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS6" name="acyl-[acyl-carrier-protein] synthetase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ocdca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ocdcaACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS7" name="acyl-[acyl-carrier-protein] synthetase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ddca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS8" name="acyl-[acyl-carrier-protein] synthetase (n-C10:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dca_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_dcaACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS9" name="acyl-[acyl-carrier-protein] synthetase (n-C8:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2836 and b1094)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_octa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ocACP_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACTOOR" name="Aminoacetone:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aact_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_mthgxl_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AADDGT" name="dTDP-N-4-acetamido-4,6-dideoxy-D-galactose transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4481</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4aaddg_c"/>
+ <speciesReference species="M_unagamu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_unagamuf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AAMYL" name="alpha-amylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1927</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AAMYLpp" name="alpha-amylase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3571</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AB6PGH" name="Arbutin 6-phosphate glucohydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2901</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.86</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbt6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_hqn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABTA" name="4-aminobutyrate transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2662 or b1302)</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.6.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_c"/>
+ <speciesReference species="M_akg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_sucsal_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABUTD" name="Aminobutyraldehyde dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1444</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.2.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abutn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABUTt2pp" name="4-aminobutyrate transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2663</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABUTtex" name="4-aminobutyrate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACCT" name="acetyl-CoA:acetoacetyl-CoA transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2221 and b2222)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_c"/>
+ <speciesReference species="M_accoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aacoa_c"/>
+ <speciesReference species="M_ac_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT1r" name="acetyl-CoA C-acetyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2224 or b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aacoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT2r" name="acetyl-CoA C-acyltransferase (butanoyl-CoA) (r)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_btcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ohcoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT3r" name="acetyl-CoA C-acyltransferase (hexanoyl-CoA) (r)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_hxcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3oocoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT4r" name="acetyl-CoA C-acyltransferase (octanoyl-CoA) (r)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_occoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3odcoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT5r" name="acetyl-CoA C-acyltransferase (decanoyl-CoA) (r)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_dcacoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3oddcoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT6r" name="acetyl-CoA C-acyltransferase (dodecanoyl-CoA) (r)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_ddcacoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3otdcoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT7r" name="acetyl-CoA C-acyltransferase (tetradecanoyl-CoA) (r)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_tdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ohdcoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACT8r" name="acetyl-CoA acyltransferase (hexadecanoyl-CoA), (r)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2342 or b3845)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oodcoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_pmtcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACt2pp" name="acetoacetate transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2223</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acac_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACtex" name="acetoacetate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acac_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACALD" name="acetaldehyde dehydrogenase (acetylating)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0351 or b1241)</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 1.2.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACALDtex" name="acetaldehyde transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACALDtpp" name="acetaldehyde reversible transport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACANTHAT" name="acetyl-CoA:anthranilate acetyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1463</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 2.3.1.118</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_anth_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acanth_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACBIPGT" name="Adenosyl cobinamide phosphate guanyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1993</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbip_c"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agdpcbi_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACCOAC" name="acetyl-CoA carboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0185 and b2316 and b3255 and b3256)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 6.4.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hco3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malcoa_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACCOAL" name="acetate-CoA ligase (ADP-forming)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4069</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 6.2.1.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_ppa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ppcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAL1PPpp" name="N-acetyl-D-galactosamine 1-phosphatase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.1.3.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAL1Ptex" name="N-acetyl-D-galactosamine 1-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal1p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGALtex" name="N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAM1PPpp" name="N-acetyl-D-glucosamine 1-phosphatase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.1.3.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAM1Ptex" name="N-acetyl-D-glucosamine 1-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAMK" name="N-acetylglucosamine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1119</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: 2.7.1.59</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAMT" name="UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3784</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c"/>
+ <speciesReference species="M_udcpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c"/>
+ <speciesReference species="M_unaga_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAptspp" name="N-Acetyl-D-glucosamine transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2417 and b1101 and b2415 and b2416) or (b0679 and b2415 and b2416))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_acgam_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAtex" name="N-Acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGK" name="acetylglutamate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3959</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.7.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acglu_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acg5p_c"/>
+ <speciesReference species="M_adp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGS" name="N-acetylglutamate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2818</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.3.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acglu_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACHBS" name="2-aceto-2-hydroxybutanoate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3670 and b3671) or (b0077 and b0078))</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2obut_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ahbut_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACKr" name="acetate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3115 or b2296 or b1849)</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 2.7.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_actp_c"/>
+ <speciesReference species="M_adp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACLS" name="acetolactate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3670 and b3671) or (b0077 and b0078))</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 4.1.3.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyr_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alac_DASH_S_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACM6PH" name="N-acetylmuramate 6-phosphate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2428</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c"/>
+ <speciesReference species="M_lac_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMAMUT" name="UDP-N-acetyl-D-mannosaminuronic acid transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3794</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacmamu_c"/>
+ <speciesReference species="M_unaga_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udp_c"/>
+ <speciesReference species="M_unagamu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMANAptspp" name="N-acetyl-D-mannosamine transport via PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1817 and b1818 and b1819 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_acmana_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmanap_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMANAtex" name="N-acetyl-D-mannosamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmana_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMUMptspp" name="N-acetylmuramate transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2417 and b2429 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_acmum_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmum6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMUMtex" name="N-acetylmuramate transport via diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmum_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACNAMt2pp" name="N-acetylneuraminate proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3224</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acnam_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACNAMtex" name="N-acetylneuraminate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4311 or b0929 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acnam_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACNML" name="N-Acetylneuraminate lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3225</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmana_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD1f" name="acyl-CoA dehydrogenase (butanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btcoa_c"/>
+ <speciesReference species="M_fad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_b2coa_c"/>
+ <speciesReference species="M_fadh2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD2f" name="acyl-CoA dehydrogenase (hexanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_hxcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_hx2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD3f" name="acyl-CoA dehydrogenase (octanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_occoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_oc2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD4f" name="acyl-CoA dehydrogenase (decanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcacoa_c"/>
+ <speciesReference species="M_fad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dc2coa_c"/>
+ <speciesReference species="M_fadh2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD5f" name="acyl-CoA dehydrogenase (dodecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcacoa_c"/>
+ <speciesReference species="M_fad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dd2coa_c"/>
+ <speciesReference species="M_fadh2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD6f" name="acyl-CoA dehydrogenase (tetradecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_tdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_td2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD7f" name="acyl-CoA dehydrogenase (hexadecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_pmtcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_hdd2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD8f" name="acyl-CoA dehydrogenase (octadecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0221</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.3.99.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_stcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_od2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOATA" name="Acetyl-CoA ACP transacylase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1091)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.38</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_accoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acACP_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACODA" name="acetylornithine deacetylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3957</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 3.5.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acorn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_orn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOLIPAabctex" name="arabinose modified core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_acolipa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_acolipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONIs" name="aconitate isomerase (spontaneous)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 5.3.3.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon_DASH_T_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon_DASH_C_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONMT" name="Trans-aconitate methyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1519</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon_DASH_T_c"/>
+ <speciesReference species="M_amet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aconm_c"/>
+ <speciesReference species="M_ahcys_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONTa" name="aconitase (half-reaction A, Citrate hydro-lyase)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0118 or b1276)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 4.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon_DASH_C_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONTb" name="aconitase (half-reaction B, Isocitrate hydro-lyase)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0118 or b1276)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 4.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon_DASH_C_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOTA" name="acetylornithine transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1748 or b3359)</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.6.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acorn_c"/>
+ <speciesReference species="M_akg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acg5sa_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPPAT120" name="acyl-(acyl carrier protein):phosphate acyltransferase (C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1090)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_ddcap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPPAT140" name="acyl-(acyl carrier protein):phosphate acyltransferase (C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1090)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_ttdcap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPPAT141" name="acyl-(acyl carrier protein):phosphate acyltransferase (C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1090)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_ttdceap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPPAT160" name="acyl-(acyl carrier protein):phosphate acyltransferase (C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1090)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_hdcap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPPAT161" name="acyl-(acyl carrier protein):phosphate acyltransferase (C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1090)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdeACP_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_hdceap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPPAT180" name="acyl-(acyl carrier protein):phosphate acyltransferase (C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1090)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocdcaACP_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_ocdcap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPPAT181" name="acyl-(acyl carrier protein):phosphate acyltransferase (C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1090)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_octeACP_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_ocdceap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPS1" name="acyl-carrier protein synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3475 or b2563)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.8.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_apoACP_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACS" name="acetyl-CoA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4069</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 6.2.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACSERtex" name="O-Acetyl-L-serine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACSERtpp" name="O-Acetyl-L-serine export via facilitated transport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2578 or b1533)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACt2rpp" name="acetate reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACt4pp" name="Na+/Acetate symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4067</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_p"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_na1_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACtex" name="Acetate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADA" name="Adenosine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1623</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.5.4.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADCL" name="4-aminobenzoate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1096</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4adcho_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abz_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADCS" name="4-amino-4-deoxychorismate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3360 and b1812)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4adcho_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADD" name="adenine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3665</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.5.4.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADEt2rpp" name="adenine transport via proton symport (reversible) (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3654 or b3714)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADEtex" name="adenine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADK1" name="adenylate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0474</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADK3" name="adentylate kinase (GTP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0474</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_gtp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADK4" name="adentylate kinase (ITP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0474</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_itp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_idp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADMDC" name="adenosylmethionine decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0120</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 4.1.1.50</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ametam_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNCYC" name="adenylate cyclase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3806</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 4.6.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_camp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNK1" name="adenosine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0474</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNUC" name="adenosine hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0030</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c"/>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNt2pp" name="adenosine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2964 or b2393)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNt2rpp" name="adenosine transport in via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2406</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNtex" name="adenosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0411</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBIK" name="Adenosyl cobinamide kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1993</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbi_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbip_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBLS" name="Adenosylcobalamin 5'-phosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1992</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agdpcbi_c"/>
+ <speciesReference species="M_rdmbzi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c"/>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBLabcpp" name="Adenosylcobalamin transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1711 and b1709 and b0158)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_adocbl_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBLtonex" name="Adenosylcobalimin transport via ton system (extermal)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3966 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbl_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_adocbl_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADPRDP" name="ADPribose diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3397 or b3034)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adprib_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADPT" name="adenine phosphoribosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0469</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSK" name="adenylyl-sulfate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2750</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 2.7.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aps_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_paps_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSL1r" name="adenylsuccinate lyase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1131</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 4.3.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcamp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_fum_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSL2r" name="adenylosuccinate lyase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1131</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 4.3.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25aics_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aicar_c"/>
+ <speciesReference species="M_fum_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSS" name="adenylosuccinate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4177</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 6.3.4.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_imp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcamp_c"/>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGDC" name="N-acetylglucosamine-6-phosphate deacetylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0677</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.5.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_gam6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3PA" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0110</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_c"/>
+ <speciesReference species="M_anhgm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3PApp" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2435 or b2817 or b4169)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p"/>
+ <speciesReference species="M_anhgm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3PH" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide beta -1,4-N-acetylglucosaminidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1107</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c"/>
+ <speciesReference species="M_anhm3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3Pt2pp" name="GlcNAc-anhMurNAc tripeptide transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0433</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PA" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0110</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_c"/>
+ <speciesReference species="M_anhgm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PApp" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2435 or b2817 or b4169)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_p"/>
+ <speciesReference species="M_anhgm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PCP" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1192</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ <speciesReference species="M_anhgm3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PCPpp" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_anhgm3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PH" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide beta -1,4-N-acetylglucosaminidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1107</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c"/>
+ <speciesReference species="M_anhm4p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4Pt2pp" name="GlcNAc-anhMurNAc tetrapeptide transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0433</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMH" name="N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl beta -1,4-N-acetylglucosaminidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1107</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c"/>
+ <speciesReference species="M_anhm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMHE" name="ADP-D-glycero-D-manno-heptose epimerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3619</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: 5.1.3.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep_DASH_DD_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adphep_DASH_LD_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMT" name="agmatinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2937</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 3.5.3.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c"/>
+ <speciesReference species="M_urea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMt2pp" name="GlcNAc-anhMurNAc transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0433</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMtex" name="agmatine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT120" name="1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3018</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1ddecg3p_c"/>
+ <speciesReference species="M_ddcaACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_pa120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT140" name="1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3018</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1tdecg3p_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_pa140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT141" name="1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3018</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1tdec7eg3p_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_pa141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT160" name="1-hexadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3018</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1hdecg3p_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_pa160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT161" name="1-hexadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3018</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1hdec9eg3p_c"/>
+ <speciesReference species="M_hdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_pa161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT180" name="1-octadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3018</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1odecg3p_c"/>
+ <speciesReference species="M_ocdcaACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_pa180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT181" name="1-octadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3018</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1odec11eg3p_c"/>
+ <speciesReference species="M_octeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_pa181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPR" name="N-acetyl-g-glutamyl-phosphate reductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3958</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.2.1.38</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acg5sa_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acg5p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGt3" name="silver transport out via proton antiport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0572 and b0573 and b0574 and b0575)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ag_c"/>
+ <speciesReference species="M_h_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ag_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AHCYSNS" name="S-adenosylhomocysteine nucleosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0159</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 3.2.2.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ahcys_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c"/>
+ <speciesReference species="M_rhcys_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AICART" name="phosphoribosylaminoimidazolecarboxamide formyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4006</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 2.1.2.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c"/>
+ <speciesReference species="M_aicar_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fprica_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AIRC2" name="phosphoribosylaminoimidazole carboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0522</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_air_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hco3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5caiz_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AIRC3" name="phosphoribosylaminoimidazole carboxylase (mutase rxn)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0523</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aizc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5caiz_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AKGDH" name="2-Oxogluterate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0116 and b0726 and b0727)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_succoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AKGt2rpp" name="2-oxoglutarate reversible transport via symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2587</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AKGtex" name="alpha-ketoglutarate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAD" name="D-alanine-D-alanine dipeptidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1488</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: 3.4.17.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAabcpp" name="D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1487 and b1486 and b1485 and b1484 and b1483) or (b3544 and b3543 and b3542 and b3541 and b3540))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_alaala_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_alaala_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAr" name="D-alanine-D-alanine ligase (reversible)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0381 or b0092)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.3.2.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_D_c" stoichiometry="2"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_alaala_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAtex" name="D-alanyl-D-alanine (DalaDala) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAGLUE" name="L-alanyl-gamma-glutamate epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1325</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDglu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaLglu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAR" name="alanine racemase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1190 or b4053)</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 5.1.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATA_D2" name="D-alanine transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2551 or b0870)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ <speciesReference species="M_pydx5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyam5p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATA_L" name="L-alanine transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2290 or b2379)</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 2.6.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATA_L2" name="alanine transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0870 or b2551)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_pydx5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyam5p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATRS" name="Alanyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2697</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_trnaala_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alatrna_c"/>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAabcpp" name="L-alanine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3454 and b3455 and b3457 and b3460 and b3456)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ala_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAt2pp" name="L-alanine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4208</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAt2rpp" name="L-alanine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAt4pp" name="L-alanine transport in via sodium symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0007</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_p"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_na1_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAtex" name="L-alanine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALCD19" name="alcohol dehydrogenase (glycerol)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0356</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALCD2x" name="alcohol dehydrogenase (ethanol)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1478 or b1241 or b0356)</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 1.1.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALDD19xr" name="aldehyde dehydrogenase (phenylacetaldehyde, NAD)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1385</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.2.1.39</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_pacald_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pac_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALDD2x" name="aldehyde dehydrogenase (acetaldehyde, NAD)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1300</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALDD2y" name="aldehyde dehydrogenase (acetaldehyde, NADP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3588</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.2.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALDD3y" name="aldehyde dehydrogenase (propanal, NADP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3588</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_ppal_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_ppa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALDD4" name="aldehyde dehydrogenase (butanal, NAD)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btal_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLK" name="Allose kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4084</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all_DASH_D_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_all6p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLPI" name="Allose 6-phosphate isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4090</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_allul6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTAMH" name="allantoate amidohydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0516</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.5.3.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltt_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ <speciesReference species="M_urdglyc_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTN" name="allantoinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0512</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 3.5.2.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltt_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTNt2rpp" name="allantoin transport in via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0511</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTNtex" name="allantoin transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLULPE" name="Allulose 6-phosphate epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4085</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_allul6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLabcpp" name="D-allose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4087 and b4088 and b4086)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_all_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_all_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLtex" name="Allose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_all_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALPATE160pp" name="apolipoprotein N-acyltransferase (phosphatidylethanolamine, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0657 and b1677)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alpp_p"/>
+ <speciesReference species="M_pe160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_p"/>
+ <speciesReference species="M_lpp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALPATG160pp" name="apolipoprotein N-acyltransferase (phosphatidylglycerol, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0657 and b1677)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alpp_p"/>
+ <speciesReference species="M_pg160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_p"/>
+ <speciesReference species="M_lpp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALR2" name="aldose reductase (methylglyoxal)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3012 or b0207 or b1781 or b3001)</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mthgxl_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acetol_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALR4x" name="aldose reductase (acetol)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acetol_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd_DASH_R_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALTRH" name="altronate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3091</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_altrn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AM3PA" name="anhydrous-N-Acetylmuramyl-tripeptide amidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0110</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhm3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_c"/>
+ <speciesReference species="M_anhm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AM4PA" name="anhydrous-N-Acetylmuramyl-tetrapeptide amidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0110</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhm4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_c"/>
+ <speciesReference species="M_anhm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AM4PCP" name="anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1192</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhm4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ <speciesReference species="M_anhm3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT1" name="Amylomaltase (maltotriose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3416</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.4.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c"/>
+ <speciesReference species="M_malttr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_maltttr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT2" name="Amylomaltase (maltotetraose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3416</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.4.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c"/>
+ <speciesReference species="M_maltttr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_maltpt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT3" name="Amylomaltase (maltopentaose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3416</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.4.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c"/>
+ <speciesReference species="M_maltpt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_malthx_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT4" name="Amylomaltase (maltohexaose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3416</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.4.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c"/>
+ <speciesReference species="M_malthx_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_malthp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMANAPEr" name="N-acetylmannosamine 6-phosphate epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3223</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmanap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMANK" name="N-acetyl-D-mannosamine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3222</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.60</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmanap_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMAOTr" name="adenosylmethionine-8-amino-7-oxononanoate transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0774</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.6.1.62</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_8aonn_c"/>
+ <speciesReference species="M_amet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amob_c"/>
+ <speciesReference species="M_dann_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMMQLT8" name="S-adenosylmethione:2-demthylmenaquinole methyltransferase (menaquinone 8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3833</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_amet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mql8_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPMS2" name="4-amino-2-methyl-5-phosphomethylpyrimidine synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3994</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_air_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ampm_c"/>
+ <speciesReference species="M_for_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPN" name="AMP nucleosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1982</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.2.2.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPTASECG" name="alanyl aminopeptidase (cys-gly)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0237 or b0932 or b4260 or b2523)</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 3.4.11.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_gly_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPTASEPG" name="aminopeptidase (pro-gly)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4260 or b0237 or b2523 or b0932)</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 3.4.11.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_progly_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_pro_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPtex" name="AMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0929 or b1377 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANHGMtex" name="GlcNAc-anhMurNAc transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANHMK" name="1,6-anhydrous-N-Acetylmuramate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1640</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhm_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmum6p_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANPRT" name="anthranilate phosphoribosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1263</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 2.4.2.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anth_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_pran_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANS" name="anthranilate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1263 and b1264)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anth_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AOBUTDs" name="L-2-amino-3-oxobutanoate decarboxylation (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2aobut_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aact_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AOXSr2" name="8-amino-7-oxononanoate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0776</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.3.1.47</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_pimACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_8aonn_c"/>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AP4AH" name="Ap4A hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0049</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ap4a_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AP4AS" name="Ap4A synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4129</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ap4a_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AP5AH" name="Ap5A hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0049</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ap5a_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APCS" name="aminopropylcadaverine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0121</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.5.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_c"/>
+ <speciesReference species="M_ametam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mta_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_na15dap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APG3PAT120" name="acyl-phosphate:glycerol-3-phosphate acyltransferase (C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3059</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcap_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1ddecg3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APG3PAT140" name="acyl-phosphate:glycerol-3-phosphate acyltransferase (C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3059</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_ttdcap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdecg3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APG3PAT141" name="acyl-phosphate:glycerol-3-phosphate acyltransferase (C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3059</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_ttdceap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdec7eg3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APG3PAT160" name="acyl-phosphate:glycerol-3-phosphate acyltransferase (C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3059</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_hdcap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdecg3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APG3PAT161" name="acyl-phosphate:glycerol-3-phosphate acyltransferase (C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3059</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_hdceap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdec9eg3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APG3PAT180" name="acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3059</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_ocdcap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odecg3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APG3PAT181" name="acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3059</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_ocdceap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odec11eg3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APH120" name="acylphosphatase (C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0968</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcap_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APH140" name="acylphosphatase (C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0968</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ttdcap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APH141" name="acylphosphatase (C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0968</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ttdceap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APH160" name="acylphosphatase (C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0968</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hdcap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_hdca_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APH161" name="acylphosphatase (C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0968</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hdceap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_hdcea_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APH180" name="acylphosphatase (C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0968</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ocdcap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ocdca_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APH181" name="acylphosphatase (C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0968</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ocdceap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ocdcea_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APPLDHr" name="aminopropanol dehydrogenase reversible">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3945</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 1.1.1.75</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aact_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_appl_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APRAUR" name="5-amino-6-(5-phosphoribosylamino)uracil reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0414</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.1.1.193</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5apru_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5aprbu_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARAI" name="L-arabinose isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0062</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rbl_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNR1" name="aerobactin reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_DASH_fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNR2" name="aerobactin reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_DASH_fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNR3" name="aerobactin reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_DASH_fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNabcpp" name="aerobactin transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0153 and b0151 and b0152)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_arbtn_DASH_fe3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_arbtn_DASH_fe3_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNexs" name="aerobactin Fe-loading reaction (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_e"/>
+ <speciesReference species="M_fe3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_DASH_fe3_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNtex" name="aerobactin secretion (to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_arbtn_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNtonex" name="aerobactin transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_DASH_fe3_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_arbtn_DASH_fe3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNtpp" name="aerobactin secretion (to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_arbtn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTptspp" name="arbutin transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3722 and b2415 and b2416) or (b2715 and b2415 and b2416))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_arbt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbt6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTtex" name="arbutin transport via diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBabcpp" name="L-arabinose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1901 and b1900 and b4460)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_arab_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_arab_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBt2rpp" name="L-arabinose transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2841</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBt3ipp" name="L-arabinose transport via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab_DASH_L_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_arab_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBtex" name="L-arabinose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGAGMt7pp" name="Arginine/agmatine antiport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4115</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_c"/>
+ <speciesReference species="M_arg_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_agm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGDC" name="arginine decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4117</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 4.1.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agm_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGDCpp" name="arginine decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2938</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 4.1.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agm_p"/>
+ <speciesReference species="M_co2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGORNt7pp" name="arginine/ornithine antiporter (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1605</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_c"/>
+ <speciesReference species="M_arg_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_orn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGSL" name="argininosuccinate lyase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3960</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 4.3.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_argsuc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_fum_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGSS" name="argininosuccinate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3172</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 6.3.4.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_citr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_argsuc_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGTRS" name="Arginyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1876</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_trnaarg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_argtrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGabcpp" name="L-arginine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2310 and b2307 and b2306 and b2308) or (b0863 and b0860 and b0861 and b0864 and b0862))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_arg_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGt3pp" name="L-arginine transport out via proton antiport (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2923</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_arg_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGtex" name="L-arginine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASAD" name="aspartate-semialdehyde dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3433</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 1.2.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aspsa_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4pasp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASCBPL" name="L-ascorbate 6-phosphate lactonase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4192</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhgulnp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASCBptspp" name="L-ascorbate transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2415 and b2416 and b4195 and b4194 and b4193)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_ascb_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ascb6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASCBtex" name="L-ascorbate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ascb_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNN" name="L-asparaginase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1767 or b0828)</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 3.5.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNNpp" name="L-asparaginase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2957</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 3.5.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn_DASH_L_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ <speciesReference species="M_nh4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNS1" name="asparagine synthase (glutamine-hydrolysing)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0674</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 6.3.5.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_asn_DASH_L_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNS2" name="asparagine synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3744</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 6.3.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_asn_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNTRS" name="Asparaginyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0930</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.22</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_trnaasn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_asntrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNabcpp" name="L-asparagine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_asn_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_asn_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNt2rpp" name="L-asparagine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1453</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNtex" name="L-asparagine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASO3t8pp" name="arsenite efflux via ATP hydrolysis (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3502</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso3_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_aso3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASO3tex" name="arsenite transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aso3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASP1DC" name="aspartate 1-decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0131</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.1.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_B_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPCT" name="aspartate carbamoyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b4244 and b4245) or b4245)</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 2.1.3.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_cbp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbasp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPK" name="aspartate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0002 or b3940 or b4024)</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 2.7.2.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4pasp_c"/>
+ <speciesReference species="M_adp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO3" name="L-aspartate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2574</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_iasp_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO4" name="L-aspartate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2574</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_iasp_c"/>
+ <speciesReference species="M_mql8_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO5" name="L-aspartate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2574</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_fum_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_iasp_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO6" name="L-aspartate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2574</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_iasp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPT" name="L-aspartase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4139</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 4.3.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPTA" name="aspartate transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0928</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 2.6.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPTRS" name="Aspartyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1866</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_trnaasp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_asptrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPabcpp" name="L-aspartate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0655 and b0654 and b0653 and b0652)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPt2_2pp" name="Aspartate transport via proton symport (2 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPt2_3pp" name="L-asparate transport via proton symport (3 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4138 or b4123)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPt2pp" name="L-aspartate transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4077</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPt2rpp" name="L-aspartate transport in via proton symport (periplasm) reversible">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPtex" name="L-aspartate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASR" name="arsenate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3503 and b1064)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso4_c"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aso3_c"/>
+ <speciesReference species="M_gthox_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AST" name="Arginine succinyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1747</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.3.1.109</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg_DASH_L_c"/>
+ <speciesReference species="M_succoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_sucarg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATHRDHr" name="L-allo-threonine dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1539</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_athr_DASH_L_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2aobut_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPHs" name="ATP amine hydrolysis (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_itp_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPM" name="ATP maintenance requirement" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="3.15" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPPRT" name="ATP phosphoribosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2019</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 2.4.2.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_prbatp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPS4rpp" name="ATP synthase (four protons for one ATP) (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (((b3736 and b3737 and b3738) and (b3731 and b3732 and b3733 and b3734 and b3735) and b3739) or ((b3736 and b3737 and b3738) and (b3731 and b3732 and b3733 and b3734 and b3735)))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 3.6.3.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BALAt2pp" name="beta-alanine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4208</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_B_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_B_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BALAtex" name="beta-alanine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_B_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_B_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BETALDHx" name="betaine-aldehyde dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0312</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.2.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_betald_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BETALDHy" name="betaine-aldehyde dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0312</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.2.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_betald_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BMOCOS" name="bis-molybdenum cofactor synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0827</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_moco_c"/>
+ <speciesReference species="M_mptamp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_bmoco_c"/>
+ <speciesReference species="M_cu2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BMOGDS1" name="bis-molybdopterin guanine dinucleotide synthase (single GDP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3857 or (b3857 and b3856))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bmoco_c"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_bmoco1gdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BMOGDS2" name="bis-molybdopterin guanine dinucleotide synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3857 or (b3857 and b3856))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bmoco1gdp_c"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_bmocogdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BPNT" name="3',5'-bisphosphate nucleotidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4214</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 3.1.3.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BSORx" name="Biotin sulfoxide reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3551</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btnso_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BSORy" name="Biotin sulfoxide reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3551</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btnso_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BTNt2ipp" name="Biotin transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BTNtex" name="Biotin transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BTS5" name="Biotin synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0775</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.8.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2fe2s_c"/>
+ <speciesReference species="M_amet_c"/>
+ <speciesReference species="M_dtbt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2fe1s_c"/>
+ <speciesReference species="M_btn_c"/>
+ <speciesReference species="M_dad_DASH_5_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BUTCT" name="Acetyl-CoA:butyrate-CoA transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2221 and b2222)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.8.3.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_but_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_btcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BUTSO3abcpp" name="butanesulfonate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0936 and b0933 and b0934) or (b0365 and b0366 and b0367))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_butso3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_butso3_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BUTSO3tex" name="butanesulfonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butso3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_butso3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BUTt2rpp" name="Butyrate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2223</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BUTtex" name="Butyrate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BWCOGDS1" name="tungsten bispterin guanine dinucleotide synthase (single GDP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3857 or (b3857 and b3856))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bwco_c"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_bwco1gdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BWCOGDS2" name="tungsten bispterin guanine dinucleotide synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3857 or (b3857 and b3856))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bwco1gdp_c"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_bwcogdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BWCOS" name="tungsten bispterin cofactor synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0827</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mptamp_c"/>
+ <speciesReference species="M_wco_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_bwco_c"/>
+ <speciesReference species="M_cu2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CA2t3pp" name="calcium (Ca+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1216</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ca2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CA2tex" name="calcium (Ca+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ca2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CADVtpp" name="Lysine/Cadaverine antiporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4132</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_lys_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ <speciesReference species="M_15dap_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CAT" name="catalase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1732 or b3942)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.11.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CAt6pp" name="calcium / sodium antiporter (1:1)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3196</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_c"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_ca2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBIAT" name="Cobinamide adenyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1270</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cbi_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbi_c"/>
+ <speciesReference species="M_pppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBItonex" name="Cobinamide transport via ton system (extermal)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3966 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cbi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBIuabcpp" name="Cobinamide transport via ABC system (uptake, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1711 and b1709 and b0158)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_cbi_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cbi_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBL1abcpp" name="Cob(1)alamin transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1711 and b1709 and b0158)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_cbl1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cbl1_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBL1tonex" name="Cob(1)alamin transport via ton system (extermal)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3966 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbl1_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cbl1_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBLAT" name="cob(I)alamin adenosyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1270</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cbl1_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c"/>
+ <speciesReference species="M_pppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBMD" name="carbamate deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbm_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBMKr" name="Carbamate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0521 or b0323 or b2874)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 2.7.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cbp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBPS" name="carbamoyl-phosphate synthase (glutamine-hydrolysing)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0032 and b0033)</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 6.3.5.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hco3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_cbp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CCGS" name="7-cyano-7-carbaguanine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0444</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cdg_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_preq0_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2abcpp" name="Cadmium (Cd+2) ABC transporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3469</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cd2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_cd2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2t3pp" name="cadmium (Cd+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3915 or b0752)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cd2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2tex" name="cadmium (Cd+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cd2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2tpp" name="cadmium (+2) transport in via permease (no H+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3040</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cd2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA120" name="CDP-Diacylglycerol pyrophostatase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3918</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdddecg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA140" name="CDP-Diacylglycerol pyrophostatase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3918</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdecg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA141" name="CDP-Diacylglycerol pyrophostatase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3918</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdec7eg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA160" name="CDP-Diacylglycerol pyrophostatase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3918</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdecg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA161" name="CDP-Diacylglycerol pyrophostatase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3918</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdec9eg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA180" name="CDP-Diacylglycerol pyrophostatase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3918</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodecg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA181" name="CDP-Diacylglycerol pyrophostatase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3918</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.6.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodec11eg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDGR" name="7-cyano-7-deazaguanine reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2794</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadph_c" stoichiometry="2"/>
+ <speciesReference species="M_preq0_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="2"/>
+ <speciesReference species="M_preq1_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDGS" name="7-deaza-7-carboxyguanine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cph4_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdg_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDPMEK" name="4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1208</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4c2me_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2p4c2me_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS160E" name="cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1661</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.1.1.79</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_pe161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_cpe160_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS160G" name="cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1661</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.1.1.79</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_pg161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_cpg160_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS180E" name="cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1661</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.1.1.79</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_pe181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_cpe180_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS180G" name="cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1661</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.1.1.79</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_pg181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_cpg180_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CGLYabcpp" name="L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3544 and b3543 and b3542 and b3541 and b3540)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_cgly_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cgly_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CGLYtex" name="L-Cysteinylglycine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHLabcpp" name="choline transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2128 and b2129 and b2130 and b2131)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_chol_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_chol_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHLt2pp" name="choline transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0314 or b1801)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHLtex" name="choline transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHOLD" name="choline dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0311</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.1.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_betald_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHORM" name="chorismate mutase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2599 or b2600)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 5.4.99.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pphn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHORS" name="chorismate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2329</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.2.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3psme_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chor_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHRPL" name="Chorismate pyruvate lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4039</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hbz_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHTBSptspp" name="chitobiose transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2416</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_chtbs_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chtbs6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHTBStex" name="chitobiose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0929 or b1377 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chtbs_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chtbs_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CINNDO" name="Cinnamate dioxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2538 and b2539 and b2540 and b2542)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cinnm_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cenchddd_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITL" name="Citrate lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0615 and b0616 and b0617) and b0614)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 4.1.3.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITt3pp" name="citrate transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cit_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITt7pp" name="Citrate transport via succinate antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0612</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c"/>
+ <speciesReference species="M_cit_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITtex" name="citrate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLIPAabctex" name="cold lipid A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lipa_cold_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_lipa_cold_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH120pp" name="cardiolipin hydrolase (periplasm, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn120_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pa120_p"/>
+ <speciesReference species="M_pg120_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH140pp" name="cardiolipin hydrolase (periplasm, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn140_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pa140_p"/>
+ <speciesReference species="M_pg140_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH141pp" name="cardiolipin hydrolase (periplasm, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn141_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pa141_p"/>
+ <speciesReference species="M_pg141_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH160pp" name="cardiolipin hydrolase (periplasm, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn160_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pa160_p"/>
+ <speciesReference species="M_pg160_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH161pp" name="cardiolipin hydrolase (periplasm, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn161_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pa161_p"/>
+ <speciesReference species="M_pg161_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH180pp" name="cardiolipin hydrolase (periplasm, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn180_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pa180_p"/>
+ <speciesReference species="M_pg180_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH181pp" name="cardiolipin hydrolase (periplasm, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn181_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pa181_p"/>
+ <speciesReference species="M_pg181_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS120pp" name="cardiolipin synthase (periplasmic, n-C12:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0789 or b1249)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn120_p"/>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS140pp" name="cardiolipin synthase (periplasmic, n-C14:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1249 or b0789)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg140_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn140_p"/>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS141pp" name="cardiolipin synthase (periplasmic, n-C14:1)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0789 or b1249)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn141_p"/>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS160pp" name="cardiolipin synthase (periplasmic, n-C16:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0789 or b1249)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn160_p"/>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS161pp" name="cardiolipin synthase (periplasmic, n-C16:1)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1249 or b0789)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn161_p"/>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS180pp" name="cardiolipin synthase (periplasmic, n-C18:0)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0789 or b1249)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn180_p"/>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS181pp" name="cardiolipin synthase (periplasmic, n-C18:1)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0789 or b1249)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn181_p"/>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLt3_2pp" name="chloride transport out via proton antiport (2:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0155 or b1592)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cl_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cl_c" stoichiometry="2"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLtex" name="chloride (Cl-1) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cl_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cl_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CMPN" name="CMP nucleosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.2.2.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_c"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CMPtex" name="CMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CMtex" name="Chloramphenicol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cm_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CMtpp" name="Chloramphenicol transport via TolC system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cm_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cm_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CO2tex" name="CO2 transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CO2tpp" name="CO2 transporter via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2abcpp" name="Cobalt (Co+2) ABC transporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3469</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cobalt2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_cobalt2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2t3pp" name="cobalt (Co+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0752 or b3915)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cobalt2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2tex" name="cobalt (Co+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2tpp" name="cobalt transport in via permease (no H+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3040 or b3816)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COLIPAKpp" name="Lipid A core kinase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2174</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipap_p"/>
+ <speciesReference species="M_udcpp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COLIPAPabctex" name="core oligosaccharide lipid A diphosphate transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_colipap_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_colipap_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COLIPAabcpp" name="core oligosaccharide lipid A transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_colipa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_colipa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COLIPAabctex" name="core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_colipa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_colipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNR1" name="coprogen(Fe(III)) reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNR2" name="coprogen(Fe(III)) reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNR3" name="coprogen(Fe(III)) reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNUtex" name="coprogen unloaded secretion (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_DASH_un_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cpgn_DASH_un_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNUtpp" name="coprogen unloaded secretion" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_DASH_un_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cpgn_DASH_un_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNabcpp" name="coprogen transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0153 and b0151 and b0152)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_cpgn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cpgn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNexs" name="coprogen Fe-loading reaction (spontaneaous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_DASH_un_e"/>
+ <speciesReference species="M_fe3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNtonex" name="Coprogen transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1102 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cpgn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPH4S" name="6-carboxy-5,6,7,8-tetrahydropterin synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2765</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ahdt_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_cph4_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPMPS" name="cyclic pyranopterin monophosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0781 and b0783)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpmp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPPPGO" name="coproporphyrinogen oxidase (O2 required)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2436</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.3.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpppg3_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_pppg9_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPPPGO2" name="Oxygen Independent coproporphyrinogen-III oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3867</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_cpppg3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="2"/>
+ <speciesReference species="M_dad_DASH_5_c" stoichiometry="2"/>
+ <speciesReference species="M_met_DASH_L_c" stoichiometry="2"/>
+ <speciesReference species="M_pppg9_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNBTCT" name="gamma-butyrobetainyl-CoA: carnitine CoA transferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0038</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bbtcoa_c"/>
+ <speciesReference species="M_crn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crncoa_c"/>
+ <speciesReference species="M_gbbtn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCAL2" name="Carnitine-CoA Ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0037</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_crn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_crncoa_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCAR" name="carnitine-CoA racemase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0036</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crncoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crnDcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCBCT" name="crotonobetainyl-CoA: carnitine CoA transferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0038</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_c"/>
+ <speciesReference species="M_ctbtcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crncoa_c"/>
+ <speciesReference species="M_ctbt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCDH" name="Carnityl-CoA dehydratse">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0036</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crncoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctbtcoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNDCAL2" name="D-Carnitine-CoA Ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0037</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_crn_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_crnDcoa_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNDabcpp" name="D-carnitine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2677 and b2678 and b2679)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_crn_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_crn_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNDt2rpp" name="D-carnitine outward transport (H+ antiport)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4111</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_DASH_D_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNDtex" name="D-carnitine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNabcpp" name="L-carnitine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2677 and b2678 and b2679)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_crn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_crn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNt2rpp" name="L-carnitine outward transport (H+ antiport)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4111</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNt7pp" name="Carnitine/butyrobetaine antiporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0040</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_c"/>
+ <speciesReference species="M_crn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c"/>
+ <speciesReference species="M_gbbtn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNt8pp" name="L-carnitine/D-carnitine antiporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0040</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_DASH_D_c"/>
+ <speciesReference species="M_crn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c"/>
+ <speciesReference species="M_crn_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNtex" name="L-carnitine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CS" name="citrate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0720</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CSND" name="Cytosine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0337</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.5.4.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CSNt2pp" name="cytosine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0336</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CSNtex" name="cytosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTBTCAL2" name="Crotonobetaine-CoA Ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0037</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_ctbt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ctbtcoa_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTBTabcpp" name="crotonobetaine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2677 and b2678 and b2679)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ctbt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ctbt_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTBTt2rpp" name="cronobetaine outward transport (H+ antiport)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4111</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctbt_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctbt_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTECOAI6" name="3-cis-2-trans-enoyl-CoA isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3846</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 5.3.3.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdecoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_td2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTECOAI7" name="3-cis-2-trans-enoyl-CoA isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3846</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 5.3.3.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdd2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTECOAI8" name="3-cis-2-trans-enoyl-CoA isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3846</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 5.3.3.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_odecoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_od2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTPS2" name="CTP synthase (glutamine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2780</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 6.3.4.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_utp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU1Opp" name="Cuprous Oxidase (Cu+1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0123</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_p" stoichiometry="4"/>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ <speciesReference species="M_o2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_p" stoichiometry="4"/>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU1abcpp" name="Copper (Cu +1) ABC transporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0484</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cu_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_cu_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU2abcpp" name="Copper (Cu+2) ABC transporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3469</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cu2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_cu2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU2tex" name="copper (Cu+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0241 or b0929 or b1377)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU2tpp" name="copper transport in via permease (no H+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3040</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CUt3" name="copper transport out via proton antiport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0572 and b0573 and b0574 and b0575)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_c"/>
+ <speciesReference species="M_h_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_cu_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CUtex" name="copper (Cu+1) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYANST" name="Cyanide sulfurtransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3425</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 2.8.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_c"/>
+ <speciesReference species="M_tsul_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_so3_c"/>
+ <speciesReference species="M_tcynt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYANSTpp" name="Cyanide sulfurtransferase (periplasmic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1308</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: 2.8.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_p"/>
+ <speciesReference species="M_tsul_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_so3_p"/>
+ <speciesReference species="M_tcynt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYANtex" name="Cyanide transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cyan_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYNTAH" name="Cyanate aminohydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0340</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_hco3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="2"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYNTt2pp" name="Cyanate transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0341</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cynt_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYNTtex" name="Cyanate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cynt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSDDS" name="D-cysteine desulfhydrase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1919</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 4.4.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_D_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_c"/>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSDS" name="Cysteine Desulfhydrase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3708 or b3008)</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 4.1.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_c"/>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSDabcpp" name="D-cysteine uptake via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_cys_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cys_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSDtex" name="D-cysteine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSS" name="cysteine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2414 or b2421)</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_c"/>
+ <speciesReference species="M_h2s_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSSADS" name="L-cysteine sulfinic acid desulfurase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2810</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 4.1.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3sala_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_so2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSTL" name="cystathionine b-lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1622 or b3008)</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 4.4.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyst_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hcys_DASH_L_c"/>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSTRS" name="Cysteinyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0526</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_trnacys_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_cystrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSabc2pp" name="L-cysteine export via ABC system (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0886 and b0887)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_cys_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSabcpp" name="L-cysteine uptake via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_cys_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYStex" name="L-cysteine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYStpp" name="L-cysteine export via facilitated transport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2578 or b1533)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTBD2pp" name="cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0978 and b0979)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTBDpp" name="cytochrome oxidase bd (ubiquinol-8: 2 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0978 and b0979) or (b0733 and b0734))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTBO3_4pp" name="cytochrome oxidase bo3 (ubiquinol-8: 4 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0429 and b0430 and b0431 and b0432)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTD" name="cytidine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2143</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.5.4.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_uri_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDH" name="Cytidine hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2162 or b0651 or b0030)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_c"/>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDK2" name="cytidine kinase (GTP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2066</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_c"/>
+ <speciesReference species="M_gtp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDt2pp" name="cytidine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2393 or b2964)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDt2rpp" name="cytidine transport in via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2406</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDtex" name="cytidine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTK1" name="cytidylate kinase (CMP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0910</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTK2" name="cytidylate kinase (dCMP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0910</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dcmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dcdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_D_DASH_LACt2pp" name="D-lactate transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3603 or b2975)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_lac_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lac_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_D_DASH_LACtex" name="D-lactate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAAD" name="D-Amino acid dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1189</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ <p>EC Number: 1.4.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADA" name="Deoxyadenosine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1623</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad_DASH_2_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADK" name="deoxyadenylate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0474</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_damp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADNt2pp" name="deoxyadenosine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2964 or b2393)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad_DASH_2_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad_DASH_2_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADNtex" name="deoxyadenosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0411</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad_DASH_2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad_DASH_2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK120" name="diacylglycerol kinase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4042</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr120_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK140" name="diacylglycerol kinase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4042</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr140_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK141" name="diacylglycerol kinase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4042</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr141_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK160" name="diacylglycerol kinase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4042</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr160_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK161" name="diacylglycerol kinase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4042</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr161_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK180" name="diacylglycerol kinase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4042</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr180_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK181" name="diacylglycerol kinase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4042</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr181_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DALAt2pp" name="D-alanine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4208</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DALAtex" name="D-Alanine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAMPtex" name="dAMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_damp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPAL" name="2,3-diaminopropionate amonnia lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2871</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPDC" name="diaminopimelate decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2838</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 4.1.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap_DASH_M_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPE" name="diaminopimelate epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3809</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 5.1.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap_DASH_LL_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap_DASH_M_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPabcpp" name="M-diaminopimelic acid ABC transport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_26dap_DASH_M_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap_DASH_M_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPtex" name="1,5-Diaminopentane transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_15dap_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN120" name="CDP-diacylglycerol synthetase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0175</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.7.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdddecg_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN140" name="CDP-diacylglycerol synthetase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0175</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.7.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdtdecg_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN141" name="CDP-diacylglycerol synthetase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0175</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.7.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdtdec7eg_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN160" name="CDP-diacylglycerol synthetase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0175</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.7.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdhdecg_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN161" name="CDP-diacylglycerol synthetase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0175</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.7.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdhdec9eg_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN180" name="CDP-diacylglycerol synthetase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0175</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.7.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdodecg_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN181" name="CDP-diacylglycerol synthetase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0175</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.7.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pa181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdodec11eg_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DATPHs" name="dATP amine hydrolysis (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_datp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ditp_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DB4PS" name="3,4-Dihydroxy-2-butanone-4-phosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3041</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_db4p_c"/>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DBTS" name="dethiobiotin synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0778</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.3.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_dann_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dtbt_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DC6PH" name="diacetylchitobiose-6-phosphate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1734</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chtbs6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c"/>
+ <speciesReference species="M_acgam6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCAtex" name="Decanoate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dca_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCMPtex" name="dCMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCTPD" name="dCTP deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2065</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.5.4.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dutp_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCYTD" name="deoxycytidine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2143</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.5.4.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCYTt2pp" name="deoxycytidine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2393 or b2964)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCYTtex" name="deoxycytidine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0411</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDCAtexi" name="Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2344</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGALK" name="2-dehydro-3-deoxygalactonokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3693</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.58</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dh3dgal_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dh3dgal6p_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGLCNt2rpp" name="2-dehydro-3-deoxy-D-gluconate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3909</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGLCNtex" name="2-dehydro-3-deoxy-D-gluconate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGLK" name="2-dehydro-3-deoxygluconokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3526</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddg6p_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDPA" name="3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2601 or b0754 or b1704)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.1.2.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_e4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pep_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dda7p_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDPGALA" name="2-dehydro-3-deoxy-6-phosphogalactonate aldolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4477</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.2.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dh3dgal6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGK1" name="deoxyguanylate kinase (dGMP:ATP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3648</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dgmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dgdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGMPtex" name="dGMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGSNt2pp" name="deoxyguanosine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2964</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGSNtex" name="deoxyguanosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHACOAH" name="2,3-dehydroadipyl-CoA hydratase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1393</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhacoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hadpcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAD1" name="dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3771</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 4.2.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmb_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mob_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAD2" name="Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3771</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mop_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAPT" name="Dihydroxyacetone phosphotransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1200 and b1199 and b1198 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_c"/>
+ <speciesReference species="M_pep_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAtex" name="Dihydroxyacetone transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAtpp" name="Dihydroxyacetone transport via facilitated diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBD" name="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0596</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.3.1.28</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ddhb_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhb_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBS" name="2,3-dihydroxybenzoate adenylate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0594</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.7.58</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhb_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhba_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBSH" name="2,3-dihydroxybenzoylserine hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhb_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHCIND" name="2,3-dihydroxycinnamate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2541</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cenchddd_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhcinnm_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHCINDO" name="2,3-dihydroxycinnamate 1,2-dioxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0348</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhcinnm_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hkntd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHDPRy" name="dihydrodipicolinate reductase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0031</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 1.3.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_thdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHDPS" name="dihydrodipicolinate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2478</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 4.2.1.52</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aspsa_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHFR" name="dihydrofolate reductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1606 or b0048)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.5.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhf_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHFS" name="dihydrofolate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2315</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.3.2.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dhpt_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dhf_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHMPTR" name="Dihydromonapterin reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1606</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhmpt_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_thmnp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHNAOT4" name="1,4-dihydroxy-2-naphthoate octaprenyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3930</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhna_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_octdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHNCOAS" name="1,4-dihydroxy-2-napthoyl-CoA synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2262</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_sbzcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_14dhncoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHNCOAT" name="1,4-dihydroxy-2-napthoyl-CoA thioesterase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0736</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14dhncoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_dhna_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHNPA2r" name="dihydroneopterin aldolase reversible">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3058</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.1.2.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhnpt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6hmhpt_c"/>
+ <speciesReference species="M_gcald_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHNPTE" name="Dihydroneopterin epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3058</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhnpt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhmpt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHORD2" name="dihydoorotic acid dehydrogenase (quinone8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0945</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 1.3.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhor_DASH_S_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHORD5" name="dihydroorotic acid (menaquinone-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0945</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 1.3.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhor_DASH_S_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_orot_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHORDfum" name="Fumarate dependent DHORD" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhor_DASH_S_c"/>
+ <speciesReference species="M_fum_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHORTS" name="dihydroorotase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1062</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 3.5.2.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhor_DASH_S_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbasp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPPD" name="2,3-dihydroxyphenylpropionate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2541</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cechddd_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhpppn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPPDA2" name="diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0414</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.5.4.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25drapp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5apru_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPS2" name="dihydropteroate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3177</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abz_c"/>
+ <speciesReference species="M_6hmhptpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhpt_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPTDCs2" name="4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhptd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mdhdhf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPTDNR" name="dihydropteridine reductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0578</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhptdn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_thptdn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPTDNRN" name="dihydropteridine reductase (NADH)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0578</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhptdn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_thptdn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPTPE" name="dihydroneopterin triphosphate 2'-epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2303</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ahdt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhmptp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHQS" name="3-dehydroquinate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3389</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.2.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dda7p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhq_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHQTi" name="3-dehydroquinate dehydratase, irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1693</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.2.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhq_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhsk_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DIMPtex" name="dIMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dimp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DINSt2pp" name="deoxyinosine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2964</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DINStex" name="deoxyinosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKGLCNR1" name="2,5-diketo-D-gluconate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0207 or b3012)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25dkglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dhguln_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKGLCNR2x" name="2,5-diketo-D-gluconate reductase (NADH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3553</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25dkglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKGLCNR2y" name="2,5-diketo-D-gluconate reductase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3553</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25dkglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMATT" name="dimethylallyltranstransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0421</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmpp_c"/>
+ <speciesReference species="M_ipdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMPPS" name="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0029</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2mb4p_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmpp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMQMT" name="3-Dimethylubiquinonol 3-methyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2232</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2omhmbl_c"/>
+ <speciesReference species="M_amet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOR1" name="Dimethyl sulfoxide reductase (Menaquinol 8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1587 and b1588 and b1589 and b1590) or (b0894 and b0895 and b0896))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_c"/>
+ <speciesReference species="M_mql8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dms_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOR1pp" name="Dimethyl sulfoxide reductase (Menaquinol 8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1872 and b1873)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_dmso_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_dms_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOR2" name="Dimethyl sulfoxide reductase (Demethylmenaquinol 8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0894 and b0895 and b0896)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_dmso_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_dms_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOR2pp" name="Dimethyl sulfoxide reductase (Demethylmenaquinol 8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1872 and b1873)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_dmso_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_dms_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOtex" name="Dimethyl sulfoxide transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmso_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOtpp" name="Dimethyl sulfoxide transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmso_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMStex" name="Dimethyl sulfide transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dms_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dms_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DNMPPA" name="Dihydroneopterin monophosphate dephosphorylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhpmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhnpt_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DNTPPA" name="Dihydroneopterin triphosphate pyrophosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0099 or b1865)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ahdt_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhpmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DOGULNR" name="2,3 dioxo-L-gulonate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3575</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23doguln_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhguln_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DOPAtex" name="dopamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dopa_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dopa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DOXRBCNtex" name="Doxorubicin transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_doxrbcn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_doxrbcn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DOXRBCNtpp" name="Doxorubicin transport via TolC system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_doxrbcn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_doxrbcn_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DPCOAK" name="dephospho-CoA kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0103</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.24</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dpcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DPR" name="2-dehydropantoate 2-reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0425 or b3774)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.1.1.169</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_pant_DASH_R_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DRPA" name="deoxyribose-phosphate aldolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4381</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.2.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dr5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_g3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBAO1" name="DsbA protein reoxidation reaction (aerobic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3860 and b1185)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_dsbard_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c"/>
+ <speciesReference species="M_dsbaox_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBAO2" name="DsbA protein reoxidation reaction (anaerobic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3860 and b1185)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_dsbard_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_dsbaox_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBCGT" name="DsbC:glutathione thiotransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2893</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbcox_p"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbcrd_p"/>
+ <speciesReference species="M_gthox_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBDR" name="DsbD reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b4136 and b2582) or (b4136 and b3781))</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbdox_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbdrd_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBGGT" name="DsbG:glutathione thiotransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0604</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbgox_p"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbgrd_p"/>
+ <speciesReference species="M_gthox_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSERDHr" name="D-serine dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1539</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_ser_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2amsa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSERt2pp" name="D-serine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4208</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ser_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ser_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSERtex" name="D-serine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DTARTD" name="D(-)-tartrate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4122</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.81</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DTMPK" name="dTMP kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1098</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dtmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dtdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DTMPtex" name="dTMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DUMPtex" name="dUMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURADx" name="dihydrouracil dehydrogenase (NAD)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2147 and b2146)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 1.3.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_56dura_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURIK1" name="deoxyuridine kinase (ATP:Deoxyuridine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1238</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_duri_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dump_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURIPP" name="deoxyuridine phosphorylase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4382 or b4384)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURIt2pp" name="deoxyuridine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2964 or b2393)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURItex" name="deoxyuridine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0411</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DUTPDP" name="dUTP diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3640 or b2251)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.23</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dutp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXPRIi" name="1-deoxy-D-xylulose reductoisomerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0173</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl5p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2me4p_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXPS" name="1-deoxy-D-xylulose 5-phosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0420</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_dxyl5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXYLK" name="1-Deoxy-D-xylulose kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3564</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dxyl_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dxyl5p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_E4PD" name="Erythrose 4-phosphate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2927 or b1779)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_e4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4per_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR100x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C10:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_tdec2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcaACP_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR100y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C10:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_tdec2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcaACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR120x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_tddec2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR120y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_tddec2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR121x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_t3c5ddeceACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cddec5eACP_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR121y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_t3c5ddeceACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cddec5eACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR140x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_tmrs2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_myrsACP_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR140y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_tmrs2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_myrsACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR141x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_t3c7mrseACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR141y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_t3c7mrseACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR160x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_tpalm2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR160y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_tpalm2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR161x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_t3c9palmeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdeACP_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR161y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_t3c9palmeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdeACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR180x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_toctd2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_ocdcaACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR180y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_toctd2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_ocdcaACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR181x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_t3c11vaceACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_octeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR181y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_t3c11vaceACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_octeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR40x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C4:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but2eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_butACP_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR40y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C4:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but2eACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_butACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR60x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C6:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_thex2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hexACP_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR60y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_thex2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hexACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR80x" name="enoyl-[acyl-carrier-protein] reductase (NADH) (n-C8:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_toct2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_ocACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR80y" name="enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C8:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_toct2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_ocACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECA4COLIPAabctex" name="enterobacterial common antigen (x4) core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_eca4colipa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_eca4colipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECA4OALpp" name="enterobacterial common antigen (x4) O-antigen ligase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3622</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p"/>
+ <speciesReference species="M_eca4und_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4colipa_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAP1pp" name="enterobacterial common antigen polymerase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3793 and b3785)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca2und_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAP2pp" name="enterobacterial common antigen polymerase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3793 and b3785)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca2und_p"/>
+ <speciesReference species="M_unagamuf_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca3und_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAP3pp" name="enterobacterial common antigen polymerase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3793 and b3785)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca3und_p"/>
+ <speciesReference species="M_unagamuf_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4und_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAtpp" name="enterobacterial common antigen transferase (flippase, cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3792</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_unagamuf_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH1" name="3-hydroxyacyl-CoA dehydratase (3-hydroxybutanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hbcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_b2coa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH2" name="3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hx2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH3" name="3-hydroxyacyl-CoA dehydratase (3-hydroxyoctanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hocoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_oc2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH4" name="3-hydroxyacyl-CoA dehydratase (3-hydroxydecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dc2coa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH5" name="3-hydroxyacyl-CoA dehydratase (3-hydroxydodecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dd2coa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH6" name="3-hydroxyacyl-CoA dehydratase (3-hydroxytetradecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3htdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_td2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH7" name="3-hydroxyacyl-CoA dehydratase (3-hydroxyhexadecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hdd2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH8" name="3-hydroxyacyl-CoA dehydratase (3-hydroxyoctadecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 4.2.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hodcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_od2coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDA" name="2-dehydro-3-deoxy-phosphogluconate aldolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1850</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 4.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddg6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDD" name="6-phosphogluconate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1851</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 4.2.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6pgc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddg6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS1" name="Endotoxin Synthesis (lauroyl transferase)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1054</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_kdo2lipid4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_kdo2lipid4L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS2" name="Endotoxin Synthesis (myristoyl transferase)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1855</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4L_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_lipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS3" name="Endotoxin Synthesis (palmitoleoyl ACP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2378</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c"/>
+ <speciesReference species="M_kdo2lipid4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_kdo2lipid4p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS4" name="Endotoxin Synthesis (myristoyl transferase)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1855</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4p_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_lipa_cold_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EGMEACPR" name="Enoylglutaryl-[ACP] methyl ester reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_egmeACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmeACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENLIPAabctex" name="phosphoethanolamine lipid A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_enlipa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_enlipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENO" name="enolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2779</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 4.2.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pep_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTCS" name="enterochelin synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0583</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhba_c" stoichiometry="3"/>
+ <speciesReference species="M_seramp_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="6"/>
+ <speciesReference species="M_enter_c"/>
+ <speciesReference species="M_h_c" stoichiometry="9"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTERES" name="Enterochelin Esterase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0585</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="3"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTERES2" name="Enterochelin Esterase (Fe containing)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0585</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="3"/>
+ <speciesReference species="M_fe3_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EPMEACPR" name="Enoylpimeloyl-[ACP] methyl ester reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1288</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.3.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_epmeACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_pmeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHAAL" name="Ethanolamine ammonia-lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2440 and b2441)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.3.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHAt2pp" name="ethanolamine transport in via proton symport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHAtex" name="ethanolamine transport via diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHSO3abcpp" name="ethanesulfonate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0936 and b0933 and b0934)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ethso3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ethso3_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHSO3tex" name="ethanesulfonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ethso3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ethso3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETOHtex" name="ethanol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etoh_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETOHtrpp" name="ethanol reversible transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etoh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6PA" name="fructose 6-phosphate aldolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0825 or b3946)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_c"/>
+ <speciesReference species="M_g3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6PP" name="D-fructose 6-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0822</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6Pt6_2pp" name="Fructose-6-phosphate transport via phosphate antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3666</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ <speciesReference species="M_f6p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6Ptex" name="fructose 6-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA100ACPHi" name="fatty-acyl-ACP hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0404</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcaACP_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_dca_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA120ACPHi" name="fatty-acyl-ACP hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0404</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_ddca_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA140ACPHi" name="fatty-acyl-ACP hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0404</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA141ACPHi" name="fatty-acyl-ACP hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0404</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA160ACPHi" name="fatty-acyl-ACP hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0404</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA161ACPHi" name="fatty-acyl-ACP hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0404</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA80ACPHi" name="fatty-acyl-ACP hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0404</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ocACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_octa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE100" name="fatty-acid-CoA thioesterase (decanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcacoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_dca_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE120" name="fatty-acid-CoA thioesterase (dodecanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcacoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_ddca_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE140" name="fatty-acid-CoA thioesterase (tetradecanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE141" name="fatty-acid-CoA thioesterase (tetradecenoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tdecoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE160" name="fatty-acid-CoA thioesterase (hexadecanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pmtcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE161" name="fatty-acid-CoA thioesterase (hexadecenoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hdcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE180" name="fatty-acid-CoA thioesterase (octadecanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_stcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE181" name="fatty-acid-CoA thioesterase (octadecenoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_odecoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE60" name="fatty-acid-CoA thioesterase (hexanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hxcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hxa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE80" name="fatty-acid-CoA thioesterase (octanoate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0452</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_occoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_octa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL100t2pp" name="fatty-acid-CoA ligase (decanoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1805 or b1701)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_dca_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_dcacoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL120t2pp" name="fatty-acid-CoA ligase (dodecanoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1701 or b1805)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ddcacoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL140t2pp" name="fatty-acid-CoA ligase (tetradecanoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1701 or b1805)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_tdcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL141t2pp" name="fatty-acid-CoA ligase (tetradecenoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1701 or b1805)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_tdecoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL160t2pp" name="fatty-acid-CoA ligase (hexadecanoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1701 or b1805)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pmtcoa_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL161t2pp" name="fatty-acid-CoA ligase (hexadecenoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1805 or b1701)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdcoa_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL180t2pp" name="fatty-acid-CoA ligase (octadecanoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1701 or b1805)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_stcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL181t2pp" name="fatty-acid-CoA ligase (octadecenoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1805 or b1701)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_odecoa_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL60t2pp" name="fatty-acid-CoA ligase (hexanoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1805 or b1701)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hxa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hxcoa_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL80t2pp" name="fatty-acid-CoA ligase (octanoate transport via vectoral Co-A coupling)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1805 or b1701)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.2.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_octa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_occoa_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FADRx" name="FAD reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3844</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FADRx2" name="FAD reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2763 and b2764)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALDH2" name="formaldehyde dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0356</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hmgth_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_Sfglutth_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALDtex" name="formaldehyde transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALDtpp" name="formaldehyde transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALGTHLs" name="formaldehyde glutathione ligase (spontaneous)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_c"/>
+ <speciesReference species="M_gthrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmgth_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FBA" name="fructose-bisphosphate aldolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2097 or b1773 or b2925)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 4.1.2.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_g3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FBA3" name="Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2925</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 4.1.2.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_s17bp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_e4p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FBP" name="fructose-bisphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3925 or b4232 or b2930)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 3.1.3.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fdp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCI" name="L-fucose isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2802</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fcl_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCLK" name="L-fuculokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2803</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_fcl_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fc1p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCLPA" name="L-fuculose 1-phosphate aldolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2738 or b2800)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.2.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fc1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_lald_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCLT" name="Ferrochelatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0475</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.99.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_c"/>
+ <speciesReference species="M_ppp9_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pheme_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDH4pp" name="formate dehydrogenase (quinone-8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3892 and b3893 and b3894) or (b1474 and b1475 and b1476))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.2.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_for_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c"/>
+ <speciesReference species="M_co2_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDH5pp" name="Formate Dehydrogenase (menaquinone-8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1474 and b1475 and b1476) or (b3892 and b3893 and b3894))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.2.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_for_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_co2_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDMO" name="FMNH2-dependent monooxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0935</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c"/>
+ <speciesReference species="M_isetac_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_gcald_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_so3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDMO2" name="FMNH2-dependent monooxygenase (methanesulfonate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0935</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c"/>
+ <speciesReference species="M_mso3_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_c"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_so3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDMO3" name="FMNH2-dependent monooxygenase (ethanesulfonate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0935</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ethso3_c"/>
+ <speciesReference species="M_fmnh2_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_so3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDMO4" name="FMNH2-dependent monooxygenase (butanesulfonate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0935</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butso3_c"/>
+ <speciesReference species="M_fmnh2_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btal_c"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_so3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDMO6" name="FMNH2-dependent monooxygenase (sulfoacetate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0935</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_sulfac_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_so3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2abcpp" name="iron (II) transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3409</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_fe2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fe2_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2t2pp" name="iron (II) transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2392</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2t3pp" name="iron (Fe+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3915</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fe2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2tex" name="iron (II) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2tpp" name="iron (+2) transport in via permease (no H+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3040</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DCITabcpp" name="iron transport from ferric-dicitrate via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4290 and b4289 and b4288 and b4287)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_fe3dcit_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_cit_c" stoichiometry="2"/>
+ <speciesReference species="M_fe3_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DCITtonex" name="ferric-dicitrate transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4291 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dcit_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fe3dcit_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DHBZR" name="release of Fe(III) from ferric 2,3-dihydroxybenzoylserine" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c"/>
+ <speciesReference species="M_fe3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DHBZSabcpp" name="ferric 2,3-dihydroxybenzoylserine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0592 and b0588 and b0590 and b0589)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_fe3dhbzs_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fe3dhbzs_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DHBZStonex" name="ferric 2,3-dihydroxybenzoylserine transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0805 and (b1252 and b3005 and b3006)) or (b2155 and (b1252 and b3005 and b3006)))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fe3dhbzs_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXR1" name="Fe(III)hydroxamate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fe3hox_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXR2" name="Fe(III)hydroxamate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fe3hox_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXR3" name="Fe(III)hydroxamate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fe3hox_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXUtex" name="Fe(III)hydroxamate unloaded secretion" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_DASH_un_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fe3hox_DASH_un_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXUtpp" name="Fe(III)hydroxamate unloaded secretion (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_DASH_un_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fe3hox_DASH_un_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXabcpp" name="ferric-dicitrate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0153 and b0151 and b0152)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_fe3hox_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fe3hox_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXexs" name="Fe(III) hydroxamate Fe-loading reaction (spontaneaous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e"/>
+ <speciesReference species="M_fe3hox_DASH_un_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXtonex" name="Fe(III)hydroxamine transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0150 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fe3hox_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3Ri" name="Fe(III) reduction" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3844</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_fe3_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3abcpp" name="iron (III) transport via ABC system (periplasm to cytoplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_fe3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fe3_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3tex" name="iron (III) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMR1" name="Ferrichrome reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_fecrm_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fecrm_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMR2" name="Ferrichrome reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fecrm_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMR3" name="Ferrichrome reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fecrm_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMUtex" name="ferrichrome (minus Fe) secretion (to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_DASH_un_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fecrm_DASH_un_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMUtpp" name="ferrichrome (minus Fe) secretion (to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_DASH_un_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fecrm_DASH_un_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMabcpp" name="ferrichrome transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0153 and b0151 and b0152)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_fecrm_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fecrm_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMexs" name="ferrichrome Fe(III)-loading reaction (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e"/>
+ <speciesReference species="M_fecrm_DASH_un_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMtonex" name="ferrichrome transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0150 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fecrm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERR1" name="Fe-enterobactin reduction (Fe(III)-unloading)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_feenter_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERR2" name="Fe-enterobactin reduction (Fe(III)-unloading)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERR3" name="Fe-enterobactin reduction (Fe(III)-unloading)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERabcpp" name="Fe-enterobactin transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0592 and b0588 and b0590 and b0589)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_feenter_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_feenter_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERexs" name="enterobactin Fe(III) binding (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_e"/>
+ <speciesReference species="M_fe3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feenter_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERtex" name="enterochelin transport (secretion periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3035</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_enter_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERtonex" name="Fe-enterobactin transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0584 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_feenter_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERtpp" name="enterochelin transport (secretion)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0591</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_enter_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMR1" name="ferroxamine reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4367</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_feoxam_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMR2" name="ferroxamine reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4367</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_feoxam_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMR3" name="ferroxamine reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4367</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_feoxam_DASH_un_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMUtex" name="ferroxamine (minus Fe3) secretion (to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_DASH_un_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_feoxam_DASH_un_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMUtpp" name="ferroxamine (minus Fe3) secretion (to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_DASH_un_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_feoxam_DASH_un_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMabcpp" name="ferroxamine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0153 and b0151 and b0152)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_feoxam_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_feoxam_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMexs" name="ferroxamine Fe3-loading reaction (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e"/>
+ <speciesReference species="M_feoxam_DASH_un_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMtonex" name="ferroxamine transport via ton system (extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0150 and (b1252 and b3005 and b3006))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_e"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_feoxam_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROpp" name="ferroxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0123</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: 1.16.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p" stoichiometry="4"/>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ <speciesReference species="M_o2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3_p" stoichiometry="4"/>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FESD1s" name="iron-sulfur cluster damage (peroxide, spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4fe4s_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3fe4s_c" stoichiometry="2"/>
+ <speciesReference species="M_fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FESD2s" name="iron-sulfur cluster damage (nitrous oxide, spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4fe4s_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_no_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3fe4s_c" stoichiometry="2"/>
+ <speciesReference species="M_fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_n2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FESR" name="iron-sulfur cluster repair" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4209</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3fe4s_c"/>
+ <speciesReference species="M_fe2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4fe4s_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FFSD" name="beta-fructofuranosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_suc6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_c"/>
+ <speciesReference species="M_g6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FHL" name="Formate-hydrogen lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b4079 and (b2481 and b2482 and b2483 and b2484 and b2485 and b2486 and b2487 and b2488 and b2489 and b2490)) or (b4079 and (b2719 and b2720 and b2721 and b2722 and b2723 and b2724)))</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FLDR2" name="flavodoxin reductase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0684 and b3924) or (b2895 and b3924))</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_flxso_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_flxr_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FLVR" name="flavin reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3844 or (b2763 and b2764))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.5.1.30</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FLVRx" name="flavin reductase (NAD)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3844</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.5.1.30</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_rbflvrd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMETTRS" name="Methionyl-tRNA formyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3288</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 2.1.2.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c"/>
+ <speciesReference species="M_mettrna_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmettrna_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMNAT" name="FMN adenylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0025</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.7.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMNRx" name="FMN reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0937 or b3844)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmnh2_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMNRx2" name="FMN reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3844 or b0937 or (b2763 and b2764))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmnh2_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FOMETRi" name="Aminomethyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2912</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 2.1.2.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5fthf_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_methf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FORCT" name="Formyl-CoA Transferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2374</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_forcoa_c"/>
+ <speciesReference species="M_oxa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_oxalcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FORt2pp" name="formate transport via proton symport (uptake only, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0904 or b2492)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FORtex" name="formate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FORtppi" name="formate transport via diffusion (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0904 or b2492)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRD2" name="fumarate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4151 and b4152 and b4153 and b4154)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 1.3.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_mql8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRD3" name="fumarate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4151 and b4152 and b4153 and b4154)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 1.3.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_fum_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUK" name="fructose-1-phosphate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2168</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.56</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_f1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fdp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRULYSDG" name="Fructoselysine phosphate deglycase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3371</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulysp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRULYSE" name="fructoselysine 3-epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4474</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_psclys_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frulys_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRULYSK" name="Fructoselysine Kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3374</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_frulys_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_frulysp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRULYSt2pp" name="Fructoselysine transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3370</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulys_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frulys_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRULYStex" name="fructoselysine transporter via diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulys_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frulys_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUURt2rpp" name="D-fructuronate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4321</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fruur_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUURtex" name="D-fructuronate transport via diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fruur_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUpts2pp" name="Fructose transport via PEP:Pyr PTS (f6p generating) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1817 and b1818 and b1819 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_fru_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUptspp" name="D-fructose transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2167 and b2169 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_fru_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f1p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUtex" name="D-fructose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FTHFD" name="formyltetrahydrofolate deformylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1232</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 3.5.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FTHFLi" name="formate-tetrahydrofolate ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 6.3.4.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_10fthf_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUCtex" name="L-fucose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fuc_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUCtpp" name="L-fucose transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2801</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fuc_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUM" name="fumarase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1612 or b4122 or b1611)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 4.2.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUMt2_2pp" name="Fumarate transport via proton symport (2 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_p"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUMt2_3pp" name="Fumarate transport via proton symport (3 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4138 or b4123 or b0621)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_p"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUMtex" name="Fumarate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUSAtex" name="Fusidic acid transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fusa_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fusa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUSAtpp" name="Fusidic acid transport via TolC system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fusa_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_fusa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1PACT" name="glucosamine-1-phosphate N-acetyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3730</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.3.1.157</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_gam1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1PPpp" name="Glucose-1-phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1002</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 3.1.3.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1PTT" name="glucose-1-phosphate thymidylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2039 or b3789)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.7.7.24</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dttp_c"/>
+ <speciesReference species="M_g1p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdpglu_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1Ptex" name="D-glucose 1-phosphate transport via diffusion">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1SAT" name="glutamate-1-semialdehyde aminotransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0154</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 5.4.3.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu1sa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5aop_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G2PP" name="glycerol-2-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2533</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G2PPpp" name="glycerol 2-phosphate phosphatase (periplasmic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4055</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT120" name="glycerol-3-phosphate acyltransferase (C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b4041)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1ddecg3p_c"/>
+ <speciesReference species="M_ACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT140" name="glycerol-3-phosphate acyltransferase (C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b4041)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_myrsACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdecg3p_c"/>
+ <speciesReference species="M_ACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT141" name="glycerol-3-phosphate acyltransferase (C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b4041)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_tdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdec7eg3p_c"/>
+ <speciesReference species="M_ACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT160" name="glycerol-3-phosphate acyltransferase (C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b4041)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_palmACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdecg3p_c"/>
+ <speciesReference species="M_ACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT161" name="glycerol-3-phosphate acyltransferase (C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b4041)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_hdeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdec9eg3p_c"/>
+ <speciesReference species="M_ACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT180" name="glycerol-3-phosphate acyltransferase (C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b4041)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_ocdcaACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odecg3p_c"/>
+ <speciesReference species="M_ACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT181" name="glycerol-3-phosphate acyltransferase (C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b4041)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.3.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_octeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odec11eg3p_c"/>
+ <speciesReference species="M_ACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PCabcpp" name="sn-glycerol-3-phosphocholine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_g3pc_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_g3pc_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PCtex" name="glycero-3-phosphocholine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD2" name="glycerol-3-phosphate dehydrogenase (NADP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3608</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.94</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD5" name="glycerol-3-phosphate dehydrogenase (ubiquinone-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2241 and b2242 and b2243) or b3426)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.1.99.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD6" name="glycerol-3-phosphate dehydrogenase (menaquinone-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2241 and b2242 and b2243)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.1.99.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_mql8_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD7" name="glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2241 and b2242 and b2243)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.1.99.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_dhap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PEabcpp" name="sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_g3pe_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PEtex" name="glycero-3-phosphoethanolamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PGabcpp" name="sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_g3pg_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PGtex" name="glycerophoglycerol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PIabcpp" name="sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_g3pi_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_g3pi_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PItex" name="glycero-3-phospho-1-inositol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PSabcpp" name="sn-glycerol-3-phosphoserine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_g3ps_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_g3ps_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PStex" name="glycerophosphserine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3ps_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PT" name="glycerol-3-phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0822</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G5SADs" name="L-glutamate 5-semialdehyde dehydratase (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu5sa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1pyr5c_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G5SD" name="glutamate-5-semialdehyde dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0243</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.2.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu5p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu5sa_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6PDA" name="glucosamine-6-phosphate deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0678</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.5.99.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6PDH2r" name="glucose 6-phosphate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1852</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 1.1.1.49</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgl_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6PP" name="glucose-6-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0822</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 3.1.3.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6Pt6_2pp" name="Glucose-6-phosphate transport via phosphate antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3666</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ <speciesReference species="M_g6p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6Ptex" name="glucose 6-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAL1PPpp" name="D-galactose 1-phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1002</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.1.3.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAL1Ptex" name="D-galactose 1-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal1p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALBDtex" name="beta D-galactose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_DASH_bD_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_DASH_bD_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTD" name="galactarate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3128</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.42</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dh4dglc_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTLO" name="L-galactonate oxidoreductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4358</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_L_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_tagur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTND" name="galactonate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4478</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dh3dgal_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTNLt2pp" name="L-galactonate transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4356</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTNLtex" name="L-galactonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTNt2pp" name="D-galactonate transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3691</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_D_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTNtex" name="D-galactonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTt2rpp" name="D-galactarte transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2789 or b3127)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct_DASH_D_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galct_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTtex" name="D-galactarte transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galct_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALKr" name="galactokinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2045 or b0757)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gal_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gal1p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALM2pp" name="aldose-1-epimerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0756</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.1.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_DASH_bD_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALS3" name="a-galactosidase (melibiose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4119</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.22</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_melib_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_c"/>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALT1" name="galactosyltransferase I (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3628</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gicolipa_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gagicolipa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALTptspp" name="Galactitol transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2094 and b2093 and b2092 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_galt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galt1p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALTtex" name="Galactitol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALURt2rpp" name="D-galacturonate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3093</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galur_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALURtex" name="D-galacturonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galur_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALUi" name="UTP-glucose-1-phosphate uridylyltransferase (irreversible)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1236</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.7.7.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_utp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALabcpp" name="D-galactose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2149 and b2150 and b2148) or (b4231 and b4227 and b4485 and b4230))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_gal_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gal_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALt2pp" name="D-galactose transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2943</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALtex" name="D-galactose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAM6Pt6_2pp" name="D-Glucosamine 6-phosphate transport via phosphate antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3666</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ <speciesReference species="M_gam6p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c"/>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAMAN6Ptex" name="D-glucosamine 6-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAMptspp" name="D-glucosamine transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1817 and b1818 and b1819 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_gam_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAMtex" name="D-glucosamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAPD" name="glyceraldehyde-3-phosphate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1779</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 1.2.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_13dpg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GARFT" name="phosphoribosylglycinamide formyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2500</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 2.1.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c"/>
+ <speciesReference species="M_gar_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fgam_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GART" name="GAR transformylase-T" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1849</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_gar_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fgam_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GBBTNtex" name="gamma-butyrobetaine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gbbtn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GCALDD" name="Glycolaldehyde dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1415</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 1.2.1.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gcald_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDMANE" name="GDP-4-dehydro-6-deoxy-D-mannose epimerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2052</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpddman_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpofuc_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPDPK" name="GDP diphosphokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2784 or b3650)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppgpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPMNH" name="GDP-mannose mannosyl hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2051</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_man_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPMNP" name="GDP-mannose phyrophosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2467</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_man1p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPTPDP" name="guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3650</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.1.7.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdptp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPtex" name="GDP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GF6PTA" name="glutamine-fructose-6-phosphate transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3729</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.6.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GGGABADr" name="gamma-glutamyl-gamma aminobutyric acid dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1300</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ggbutal_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gg4abut_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GGGABAH" name="gamma-glutamyl-gamma-aminobutyric acid hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1298</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gg4abut_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GGPTRCO" name="gamma glutamyl putrescine oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1301</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ggptrc_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ggbutal_c"/>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GGPTRCS" name="gamma glutamyl putrescine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1297</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_ptrc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ggptrc_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GHBDHx" name="gamma-hydroxybutyrate dehydrogenase (NADH)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3882</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_sucsal_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ghb_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GHMT2r" name="glycine hydroxymethyltransferase, reversible">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2551</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 2.1.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mlthf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GK1" name="guanylate kinase (GMP:ATP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3648</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLBRAN2" name="1,4-alpha-glucan branching enzyme (glycogen -> bglycogen)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3432</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.4.1.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glycogen_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_bglycogen_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCATr" name="D-glucose O-acetyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0459</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.3.1.79</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acglc_DASH_D_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCDpp" name="Glucose dehydrogenase (ubiquinone-8 as acceptor) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0124 or b0837)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c"/>
+ <speciesReference species="M_glcn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCNt2rpp" name="D-gluconate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4321 or b4476 or b3415 or b4265)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCNtex" name="D-gluconate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCP" name="glycogen phosphorylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3428 or b3417)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.4.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glycogen_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCP2" name="glycogen phosphorylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3417 or b3428)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.4.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bglycogen_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRAL" name="5-dehydro-4-deoxyglucarate aldolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3126</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.2.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dh4dglc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h3oppan_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRD" name="glucarate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2788 or b2787)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dh4dglc_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRt2rpp" name="D-glucarate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3127 or b2789)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcr_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRtex" name="D-glucarate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcr_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCS1" name="glycogen synthase (ADPGlc)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3429</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.4.1.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adpglc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glycogen_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCTR1" name="glucosyltransferase I (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3631</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icolipa_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gicolipa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCTR2" name="glucosyltransferase II (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3627</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gagicolipa_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ggagicolipa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCTR3" name="glucosyltransferase III (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3626</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ggagicolipa_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gggagicolipa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCUR1Ptex" name="D-glucuronate 1-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur1p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCURt2rpp" name="D-glucuronate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3909 or b3093)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCURtex" name="D-glucuronat transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCabcpp" name="D-glucose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2149 and b2150 and b2148)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCptspp" name="D-glucose transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2417 and b1621 and b2415 and b2416) or (b2417 and b1101 and b2415 and b2416) or (b1817 and b1818 and b1819 and b2415 and b2416))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCt2pp" name="D-glucose transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2943</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCtex" name="glucose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCtexi" name="D-glucose transport via diffusion (extracellular to periplasm) irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4036</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLDBRAN2" name="glycogen debranching enzyme (bglycogen -> glycogen)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3431</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bglycogen_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glycogen_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLGC" name="glucose-1-phosphate adenylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3430</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.7.7.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_g1p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adpglc_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNS" name="glutamine synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3870 or b1297)</p>
+ <p>SUBSYSTEM: Glutamate Metabolism </p>
+ <p>EC Number: 6.3.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNTRS" name="Glutaminyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0680</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_trnagln_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_glntrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNabcpp" name="L-glutamine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0811 and b0810 and b0809)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_gln_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNtex" name="L-glutamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gln_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLTPD" name="Galactitol-1-phosphate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2091</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt1p_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_tag6p_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLU5K" name="glutamate 5-kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0242</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.7.2.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glu5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUABUTt7pp" name="4-aminobutyrate/glutamate antiport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1492</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_c"/>
+ <speciesReference species="M_glu_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_4abut_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUCYS" name="gamma-glutamylcysteine synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2688</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.3.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glucys_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUDC" name="Glutamate Decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3517 or b1493)</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ <p>EC Number: 4.1.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUDy" name="glutamate dehydrogenase (NADP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1761</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ <p>EC Number: 1.4.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUN" name="glutaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1812 or b0485 or b1524)</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ <p>EC Number: 3.5.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUNpp" name="glutaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2957</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ <p>EC Number: 3.5.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln_DASH_L_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_p"/>
+ <speciesReference species="M_nh4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUPRT" name="glutamine phosphoribosyldiphosphate amidotransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2312</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 2.4.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_pram_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUR" name="glutamate racemase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3967</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 5.1.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUSy" name="glutamate synthase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3212 and b3213)</p>
+ <p>SUBSYSTEM: Glutamate Metabolism </p>
+ <p>EC Number: 1.4.1.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c" stoichiometry="2"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUTRR" name="glutamyl-tRNA reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1210</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glutrna_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu1sa_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_trnaglu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUTRS" name="Glutamyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2400</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.1.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_trnaglu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_glutrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUabcpp" name="L-glutamate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0655 and b0654 and b0653 and b0652)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_glu_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUt2rpp" name="L-glutamate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4077</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUt4pp" name="Na+/glutamate symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3653</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_p"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_na1_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUtex" name="L-glutamate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLXCL" name="glyoxalate carboligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0507</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ <p>EC Number: 4.1.1.47</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glx_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h3oppan_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYALDtex" name="Glyceraldehyde transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyald_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYALDtpp" name="Glyceraldehyde facilitated diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3927</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyald_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYAT" name="glycine C-acetyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3617</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 2.3.1.29</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_gly_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2aobut_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYBabcpp" name="Glycine betaine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2128 and b2129 and b2130 and b2131)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_glyb_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glyb_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYBt2pp" name="Glycine betaine transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1801 or b4111)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYBtex" name="Glycine betaine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC2Pabcpp" name="sn-Glycerol 2-phosphate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_glyc2p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glyc2p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC2Ptex" name="Glycerol-2-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0241 or b0929 or b1377)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc2p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC3Pabcpp" name="sn-Glycerol 3-phosphate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_glyc3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC3Pt6pp" name="Glycerol-3-phosphate : phosphate antiporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2240</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_glyc3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC3Ptex" name="Glycerol-3-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCAt2rpp" name="D-glycerate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2789 or b3127)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_DASH_R_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_DASH_R_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCAtex" name="D-glycerate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_DASH_R_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_DASH_R_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCDx" name="Glycerol dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3945</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCK" name="glycerate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0514</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ <p>EC Number: 2.7.1.31</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glyc_DASH_R_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCK2" name="glycerate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3124</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 2.7.1.31</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glyc_DASH_R_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2pg_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCL" name="Glycine Cleavage System" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2904 and b2903 and b2905 and b0116)</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_mlthf_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTDx" name="Glycolate dehydrogenase (NAD)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3553 or b1033)</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTDy" name="Glycolate dehydrogenase (NADP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1033 or b3553)</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ <p>EC Number: 1.1.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTt2rpp" name="glycolate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3603 or b2975)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTt4pp" name="glycolate transport via sodium symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4067</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_p"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_na1_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTtex" name="glycolate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCTO2" name="Glycolate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2979 and b4467 and b4468)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCTO3" name="Glycolate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2979 and b4467 and b4468)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_mql8_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCTO4" name="Glycolate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2979 and b4467 and b4468)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_glyclt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_glx_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCtex" name="glycerol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCtpp" name="glycerol transport via channel (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3927 or s0001)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYK" name="glycerol kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3926</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.30</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glyc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYOX" name="hydroxyacylglutathione hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0212</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: 3.1.2.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lgt_DASH_S_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lac_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYOX3" name="glyoxalase III" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mthgxl_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lac_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYTRS" name="Glycyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3559 and b3560)</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_trnagly_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_glytrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYt2pp" name="glycine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4208 or b1801)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYt2rpp" name="glycine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYt4pp" name="glycine transport in via sodium symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0007</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_p"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_na1_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYtex" name="Glycine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMAND" name="GDP-D-mannose dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2053</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.47</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpddman_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMHEPAT" name="D-glycero-D-manno-hepose 1-phosphate adenyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3052</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gmhep1p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adphep_DASH_DD_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMHEPK" name="D-glycero-D-manno-heptose 7-phosphate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3052</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gmhep7p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gmhep17bp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMHEPPA" name="D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0200</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmhep17bp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmhep1p_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMPR" name="GMP reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0104</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 1.7.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMPS2" name="GMP synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2507</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 6.3.5.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_xmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMPtex" name="GMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GND" name="phosphogluconate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2029</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 1.1.1.44</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6pgc_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_ru5p_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GNK" name="gluconokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4268 or b3437)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glcn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgc_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GOFUCR" name="GDP-4-oxo-L-fucose reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2052</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpofuc_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpfuc_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GP4GH" name="Gp4G hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0049</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gp4g_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA1" name="Glycerophosphodiester phosphodiesterase (Glycerophosphocholine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3449</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA1pp" name="Glycerophosphodiester phosphodiesterase (Glycerophosphocholine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2239</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_p"/>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA2" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3449</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA2pp" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2239</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_p"/>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA3" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoserine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3449</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA3pp" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoserine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2239</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ser_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA4" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3449</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA4pp" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2239</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p"/>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA5" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3449</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_inost_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA5pp" name="Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2239</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.4.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_inost_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GRTT" name="geranyltranstransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0421</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grdp_c"/>
+ <speciesReference species="M_ipdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GRXR" name="glutaredoxin reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1064 or b3610 or b1654 or b0849)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.8.4.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxox_c"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxrd_c"/>
+ <speciesReference species="M_gthox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSNK" name="guanosine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0477</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gsn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSNt2pp" name="guanosine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2964</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSNtex" name="guanosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSPMDA" name="Glutathionylspermidine amidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2988</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 3.5.1.78</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtspmd_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_spmd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSPMDS" name="Glutathionylspermidine synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2988</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 6.3.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_spmd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gtspmd_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHOXtex" name="glutathione (ox) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHOr" name="glutathione oxidoreductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3500</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.8.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHPi" name="glutathione peridoxase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1710</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.11.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDHpp" name="glutathione hydralase (periplasmic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3447</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_p"/>
+ <speciesReference species="M_glu_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDabc2pp" name="glutathione export via ABC system (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0886 and b0887)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_gthrd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDabcpp" name="Reduced glutathione via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0829 and b0830 and b0831 and b0832)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_gthrd_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDtex" name="glutathione transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHS" name="glutathione synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2947</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.3.2.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glucys_c"/>
+ <speciesReference species="M_gly_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPCI" name="GTP cyclohydrolase I" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2153</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.5.4.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahdt_c"/>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPCII2" name="GTP cyclohydrolase II (25drapp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1277</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_25drapp_c"/>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPDPDP" name="guanosine-5'-triphosphate,3'-diphosphate diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3779</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.6.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdptp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ppgpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPDPK" name="GTP diphosphokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2784</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.6.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gtp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_gdptp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPHs" name="GTP amine hydrolysis (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_xtp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPtex" name="GTP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gtp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUACYC" name="guanylate cyclase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 4.6.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_35cgmp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAD" name="guanine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2883</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.5.4.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_xan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAPRT" name="guanine phosphoribosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0238 or b0125)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAt2pp" name="guanine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3654</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAtex" name="Guanine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0411</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAtpp" name="Guanine transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUI1" name="glucuronate isomerase (D-glucuronate)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3092</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUI2" name="glucuronate isomerase (D-galacturonate)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3092</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tagur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUR1PPpp" name="Glucuronate 1-phosphate phosphatase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2O2tex" name="hydrogen peroxide transport via diffusion (external)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2Otex" name="H2O transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (s0001 or b0957 or b3875 or b2215 or b0241 or b1319 or b1377 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2Otpp" name="H2O transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (s0001 or b0875)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2SO" name="Hydrogen sulfide oxidation" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_c"/>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_so4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2St1pp" name="h2s transport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2Stex" name="h2s transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2tex" name="hydrogen transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2tpp" name="hydrogen transport diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD1" name="3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aacoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hbcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD2" name="3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ohcoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hhcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD3" name="3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oocoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hocoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD4" name="3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3odcoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hdcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD5" name="3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oddcoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hddcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD6" name="3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3otdcoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3htdcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD7" name="3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ohdcoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hhdcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD8" name="3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA), peroxisomal">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3846 or b2341)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 1.1.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oodcoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hodcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HADPCOADH3" name="3-hydroxyadipyl-CoA dehydrogenase (NAD+)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1395</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hadpcoa_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_oxadpcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HBZOPT" name="Hydroxybenzoate octaprenyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4040</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hbz_c"/>
+ <speciesReference species="M_octdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ophb_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HCINNMt2rpp" name="3-hydroxycinnamic acid transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0353</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcinnm_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HCINNMtex" name="3-hydroxycinnamic acid transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcinnm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HCO3E" name="HCO3 equilibration reaction">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0126 or b0339)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 4.2.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hco3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HCYSMT" name="homocysteine S-methyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0261</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 2.1.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c"/>
+ <speciesReference species="M_hcys_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HCYSMT2" name="Homocysteine Methyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0261</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hcys_DASH_L_c"/>
+ <speciesReference species="M_mmet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_met_DASH_L_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HDCAtexi" name="Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2344</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HDCEAtexi" name="Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2344</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcea_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEMEOS" name="Heme O synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0428</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pheme_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hemeO_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPK1" name="LPS heptose kinase I (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3630</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hhlipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_phhlipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPK2" name="LPS heptose kinase II (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3625</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hphhlipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_phphhlipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT1" name="heptosyltransferase I (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3621</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep_DASH_LD_c"/>
+ <speciesReference species="M_lipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hlipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT2" name="heptosyltransferase II (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3620</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep_DASH_LD_c"/>
+ <speciesReference species="M_hlipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hhlipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT3" name="heptosyltransferase III (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3632</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep_DASH_LD_c"/>
+ <speciesReference species="M_phhlipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hphhlipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT4" name="heptosyltransferase IV (LPS core synthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3623</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep_DASH_LD_c"/>
+ <speciesReference species="M_gggagicolipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_colipa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HETZK" name="hydroxyethylthiazole kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2104</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.50</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4mhetz_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4mpetz_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEX1" name="hexokinase (D-glucose:ATP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2388</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.7.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEX4" name="hexokinase (D-mannose:ATP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_man_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_man6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEX7" name="hexokinase (D-fructose:ATP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0394</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_fru_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEXt2rpp" name="hexanoate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2223</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hxa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hxa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HG2abcpp" name="Mercury (Hg+2) ABC transporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3469</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hg2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_hg2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HG2t3pp" name="mercury (Hg+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3915</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hg2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hg2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HG2tex" name="mercury (Hg+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hg2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hg2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISTD" name="histidinol dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2020</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 1.1.1.23</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_histd_c"/>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_his_DASH_L_c"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISTP" name="histidinol-phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2022</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 3.1.3.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hisp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_histd_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISTRS" name="Histidyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2514</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_his_DASH_L_c"/>
+ <speciesReference species="M_trnahis_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_histrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISabcpp" name="L-histidine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2309 and b2307 and b2306 and b2308)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_his_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_his_DASH_L_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISt2rpp" name="L-histidine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0112</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_his_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_his_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HIStex" name="L-histidine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_his_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HKNDDH" name="2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0349</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hkndd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_op4en_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HKNTDH" name="2-hydroxy-6-ketononotrienedioate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0349</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hkntd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_op4en_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HMBS" name="hydroxymethylbilane synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3805</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.3.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ppbng_c" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmbil_c"/>
+ <speciesReference species="M_nh4_c" stoichiometry="4"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HMPK1" name="hydroxymethylpyrimidine kinase (ATP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2103 or b2418)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.49</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4ahmmp_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ampm_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HOMt2pp" name="L-homoserineserine efflux via proton symport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0813 or b3824)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom_DASH_L_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hom_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HOMtex" name="L-homoserine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hom_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HOPNTAL" name="4-hydroxy-2-oxopentanoate aldolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0352</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4h2opntn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPPK2" name="6-hydroxymethyl-dihydropterin pyrophosphokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0142</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.6.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6hmhpt_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6hmhptpp_c"/>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPPPNDO" name="2,3-dihydroxypheylpropionate 1,2-dioxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0348</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.13.11.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhpppn_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hkndd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPPPNt2rpp" name="3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0353</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpppn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPPPNtex" name="3-(3-hydroxyphenyl)propionate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpppn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPYRI" name="hydroxypyruvate isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0508</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.22</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hpyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h3oppan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPYRRx" name="Hydroxypyruvate reductase (NADH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1033 or b3553)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hpyr_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_DASH_R_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPYRRy" name="Hydroxypyruvate reductase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1033 or b3553)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hpyr_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_DASH_R_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSDy" name="homoserine dehydrogenase (NADPH)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3940 or b0002)</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 1.1.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom_DASH_L_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aspsa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSK" name="homoserine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0003</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 2.7.1.39</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_hom_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_phom_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSST" name="homoserine O-succinyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4013</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 2.3.1.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom_DASH_L_c"/>
+ <speciesReference species="M_succoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_suchms_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSTPT" name="histidinol-phosphate transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2021</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 2.6.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_imacp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_hisp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HXAND" name="hypoxanthine dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2866 and b2867 and b2868)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_hxan_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_xan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HXAtex" name="Hexanoate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0241 or b0929 or b1377)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxa_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HXCT" name="Acetyl-CoA:hexanoate-CoA transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2221 and b2222)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.8.3.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_hxa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_hxcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HXPRT" name="hypoxanthine phosphoribosyltransferase (Hypoxanthine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0238 or b0125)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYD1pp" name="hydrogenase (ubiquinone-8: 2 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0972 and b0973 and b0974) or (b2994 and b2995 and b2996 and b2997) or (b2719 and b2720 and b2721 and b2722 and b2723 and b2724))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.18.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYD2pp" name="Hydrogenase (menaquinone8: 2 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0972 and b0973 and b0974) or (b2994 and b2995 and b2996 and b2997))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.18.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYD3pp" name="Hydrogenase (Demethylmenaquinone-8: 2 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0972 and b0973 and b0974) or (b2994 and b2995 and b2996 and b2997))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.18.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYPOE" name="hypothetical enyme" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pyam5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pydam_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYXNtex" name="Hypoxanthine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYXNtpp" name="Hypoxanthine transport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Htex" name="proton transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_I2FE2SR" name="ISC [2Fe-2S] regeneration" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2530 and b2529)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2fe1s_c"/>
+ <speciesReference species="M_iscssh_c"/>
+ <speciesReference species="M_iscu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_iscs_c"/>
+ <speciesReference species="M_iscu_DASH_2fe2s_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_I2FE2SS" name="ISC [2Fe-2S] Synthesis" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3807 and b2530 and b2529)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_iscssh_c" stoichiometry="2"/>
+ <speciesReference species="M_iscu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_h_c" stoichiometry="6"/>
+ <speciesReference species="M_iscs_c" stoichiometry="2"/>
+ <speciesReference species="M_iscu_DASH_2fe2s_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_I2FE2SS2" name="ISC [2Fe-2S] Synthesis II" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3807 and b2530 and b2529)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_iscssh_c" stoichiometry="2"/>
+ <speciesReference species="M_iscu_DASH_2fe2s_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_h_c" stoichiometry="6"/>
+ <speciesReference species="M_iscs_c" stoichiometry="2"/>
+ <speciesReference species="M_iscu_DASH_2fe2s2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_I2FE2ST" name="ISC [2Fe-2S] Transfer" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2528 and b2529)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_iscu_DASH_2fe2s_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2fe2s_c"/>
+ <speciesReference species="M_iscu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_I4FE4SR" name="ISC [4Fe-4S] Reduction" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2529</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_iscu_DASH_2fe2s2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_iscu_DASH_4fe4s_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_I4FE4ST" name="ISC [4Fe-4S] Transfer" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2528 and b2529)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_iscu_DASH_4fe4s_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4fe4s_c"/>
+ <speciesReference species="M_iscu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICDHyr" name="isocitrate dehydrogenase (NADP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1136</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 1.1.1.42</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICHORS" name="isochorismate synthase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2265</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 5.4.99.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ichor_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICHORSi" name="Isochorismate Synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0593</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ichor_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICHORT" name="isochorismatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0595</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.3.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ichor_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23ddhb_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICL" name="Isocitrate lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4015</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 4.1.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICYSDS" name="ISC Cysteine desulfuration" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2530</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_iscs_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_iscssh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDOND" name="L-idonate 5-dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4267</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon_DASH_L_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDOND2" name="L-indonate 5-dehydrogenase (NADP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4267</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon_DASH_L_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDONt2rpp" name="L-idonate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4265</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_idon_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_idon_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDONtex" name="L-idonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_idon_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IG3PS" name="Imidazole-glycerol-3-phosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2023 and b2025)</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_prlp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aicar_c"/>
+ <speciesReference species="M_eig3p_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IGPDH" name="imidazoleglycerol-phosphate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2022</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 4.2.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eig3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_imacp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IGPS" name="indole-3-glycerol-phosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1262</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.1.1.48</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2cpr5p_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ig3p_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILETA" name="isoleucine transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3770</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 2.6.1.42</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_ile_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mop_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILETRS" name="Isoleucyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0026</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ile_DASH_L_c"/>
+ <speciesReference species="M_trnaile_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_iletrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILEabcpp" name="L-isoleucine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3454 and b3455 and b3457 and b3460 and b3456)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ile_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ile_DASH_L_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILEt2rpp" name="L-isoleucine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0401</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ile_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ile_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILEtex" name="L-isoleucine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ile_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IMPC" name="IMP cyclohydrolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4006</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 3.5.4.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_imp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fprica_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IMPD" name="IMP dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2508</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 1.1.1.205</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_imp_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_xmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IMPtex" name="IMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INDOLEt2pp" name="Indole transport via proton symport, irreversible (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3265 and b3266) and b3035)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_indole_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_indole_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INDOLEt2rpp" name="Indole transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3161</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_indole_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_indole_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INDOLEtex" name="Indole transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INOSTt4pp" name="Na+/myo-inositol symporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3679</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_p"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_c"/>
+ <speciesReference species="M_na1_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSH" name="Inosine hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0030</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.2.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ins_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_c"/>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSK" name="insosine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0477</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.1.73</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ins_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_imp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSTtex" name="inositol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSt2pp" name="inosine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2964</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ins_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ins_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSt2rpp" name="inosine transport in via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2406</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ins_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ins_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INStex" name="inosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0411</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPDDI" name="isopentenyl-diphosphate D-isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2889</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 5.3.3.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ipdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPDPS" name="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0029</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2mb4p_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ipdp_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPMD" name="3-isopropylmalate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0073</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 1.1.1.85</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c2hmp_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3c4mop_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPPMIa" name="3-isopropylmalate dehydratase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0071 and b0072)</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 4.2.1.33</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c2hmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ippm_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPPMIb" name="2-isopropylmalate hydratase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0071 and b0072)</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 4.2.1.33</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ippm_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3c3hmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPPS" name="2-isopropylmalate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0074</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 4.1.3.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3mob_c"/>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3c3hmp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ISETACabcpp" name="isethionate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0365 and b0366 and b0367) or (b0936 and b0933 and b0934))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_isetac_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_isetac_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ISETACtex" name="isethionate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_isetac_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_isetac_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_K2L4Aabcpp" name="KDO(2)-lipid IV A transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_kdo2lipid4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_kdo2lipid4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_K2L4Aabctex" name="KDO(2)-lipid IV A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_kdo2lipid4_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_kdo2lipid4_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KARA1" name="ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3774</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 1.1.1.86</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmb_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alac_DASH_S_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KARA2" name="ketol-acid reductoisomerase (2-Acetolactate)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3774</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 1.1.1.86</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ahbut_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhmp_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAS14" name="beta-ketoacyl-ACP synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2323 or b1095)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_actACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAS15" name="beta-ketoacyl-ACP synthase (2)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1091</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_actACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KDOCT2" name="3-deoxy-manno-octulosonate cytidylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0918</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: 2.7.7.38</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_kdo_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ckdo_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KDOPP" name="3-deoxy-manno-octulosonate-8-phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3198</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: 3.1.3.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_kdo8p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KDOPS" name="3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1215</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: 4.1.2.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ara5p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pep_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo8p_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KG6PDC" name="3-keto-L-gulonate 6-phosphate decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4196 or b3581)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhgulnp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_xu5p_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Kabcpp" name="Potassium ABC transporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0698 and b0697 and b0696) or (b0698 and b0697 and b0696 and b4513))</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_k_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_k_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Kt2pp" name="potassium transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1291 and b3290 and b3849) or b1250 or (b1291 and b3290 and b1363) or b3747)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_k_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_k_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Kt3pp" name="potassium transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1216 or b0842 or b3350 or b0047)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_k_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Ktex" name="potassium transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_DASH_LACD2" name="L-Lactate dehydrogenase (ubiquinone)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3605 or (b0306 and b0307 and b0308))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.1.2.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_L_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_DASH_LACD3" name="L-Lactate dehydrogenase (menaquinone)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3605 or (b0306 and b0307 and b0308))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.1.2.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_L_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_DASH_LACt2rpp" name="L-lactate reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3603 or b2975)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_lac_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lac_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_DASH_LACtex" name="L-lactate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LA4NTpp" name="4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2257</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p"/>
+ <speciesReference species="M_uLa4n_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acolipa_p"/>
+ <speciesReference species="M_udcpp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LACZ" name="b-galactosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0344</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.23</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lcts_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_c"/>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LACZpp" name="b-galactosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2132</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.108</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_lcts_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p"/>
+ <speciesReference species="M_glc_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LADGMDH" name="L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1326</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap_DASH_M_c"/>
+ <speciesReference species="M_LalaDglu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALADGLUtex" name="L-alanyl-D-glutamate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDglu_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDglu_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALADGLUtpp" name="L-alanyl-D-glutamate transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1634 or b3496 or b4130 or b0709)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDglu_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDglu_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALALGLUtex" name="L-alanyl-L-glutamate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaLglu_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaLglu_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALALGLUtpp" name="L-alanyl-L-glutamate transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1634 or b3496 or b4130 or b0709)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaLglu_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaLglu_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALDO2x" name="D-Lactaldehyde:NAD+ 1-oxidoreductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3945</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: 1.1.1.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mthgxl_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lald_DASH_D_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALDO3" name="L-Lactaldehyde:NADP+ 1-oxidoreductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: 1.1.1.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mthgxl_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lald_DASH_L_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALGP" name="L-alanyl-gamma-L-glutamate peptidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0237</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaLglu_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCADi" name="lactaldehyde dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1415</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.2.1.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lald_DASH_L_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_lac_DASH_L_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCARR" name="lacaldehyde reductase (R-propane-1,2-diol forming)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: 1.1.1.77</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lald_DASH_D_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd_DASH_R_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCARS" name="lacaldehyde reductase (S-propane-1,2-diol forming)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2799</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.77</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lald_DASH_L_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd_DASH_S_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCTSt3ipp" name="Lactose transport via proton aniport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2170 or b0070 or b1528)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lcts_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lcts_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCTStex" name="Lactose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lcts_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lcts_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCTStpp" name="Lactose transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0343</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_lcts_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lcts_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LDH_D" name="D-lactate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2133 or b1380)</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 1.1.1.28</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_D_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LDH_D2" name="D-lactate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2133</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.1.2.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac_DASH_D_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUTAi" name="leucine transaminase (irreversible)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3770 or b4054)</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 2.6.1.42</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4mop_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_leu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUTRS" name="Leucyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0642</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_leu_DASH_L_c"/>
+ <speciesReference species="M_trnaleu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_leutrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUabcpp" name="L-leucine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3454 and b3455 and b3457 and b3460 and b3456) or (b3454 and b3455 and b3457 and b3458 and b3456))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_leu_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_leu_DASH_L_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUt2rpp" name="L-leucine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0401</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_leu_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_leu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUtex" name="L-leucine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LGTHL" name="lactoylglutathione lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1651</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: 4.4.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_mthgxl_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lgt_DASH_S_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPACabcpp" name="lipid (cold) A transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lipa_cold_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_lipa_cold_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAHT2ex" name="core oligosaccharide lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0622</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_e"/>
+ <speciesReference species="M_h_e"/>
+ <speciesReference species="M_hdca_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_e"/>
+ <speciesReference species="M_hacolipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAHTex" name="Lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0622</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e"/>
+ <speciesReference species="M_hdca_e"/>
+ <speciesReference species="M_lipa_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_e"/>
+ <speciesReference species="M_halipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAMPL" name="Lipoyl-adenylate protein ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4386</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipoamp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_lipopb_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPATPT" name="Lipoate-ATP adenylate transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4386</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_lipoate_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipoamp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAabcpp" name="lipid A transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_lipa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAabctex" name="lipid A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lipa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_lipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPOCT" name="Lipoyl(octanoyl) transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0630</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_octapb_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPOS" name="Lipoate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0628</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4fe4s_c"/>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_octapb_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2fe2s_c"/>
+ <speciesReference species="M_dad_DASH_5_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_lipopb_c"/>
+ <speciesReference species="M_met_DASH_L_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPOt2pp" name="Lipoate transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_lipoate_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lipoate_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPOtex" name="lipoate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipoate_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipoate_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPADSS" name="Lipid A disaccaride synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0182</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: 2.4.1.182</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipidX_c"/>
+ <speciesReference species="M_u23ga_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lipidAds_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A120pp" name="Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1ddecg3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A140pp" name="Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1tdecg3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A141pp" name="Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1tdec7eg3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A160pp" name="Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1hdecg3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A161pp" name="Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1hdec9eg3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A180pp" name="Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1odecg3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A181pp" name="Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1odec11eg3p_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E120pp" name="Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe120_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E140pp" name="Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe140_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E141pp" name="Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe141_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E160pp" name="Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe160_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E161pp" name="Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe161_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E180pp" name="Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe180_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E181pp" name="Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe181_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G120pp" name="Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg120_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G140pp" name="Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg140_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G141pp" name="Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg141_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G160pp" name="Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg160_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G161pp" name="Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg161_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G180pp" name="Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg180_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G181pp" name="Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0494</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg181_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A120" name="Lysophospholipase L2 (2-acylglycerophosphotidate, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddecg3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A140" name="Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdecg3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A141" name="Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdec7eg3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A160" name="Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdecg3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A161" name="Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdec9eg3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A180" name="Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odecg3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ocdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A181" name="Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odec11eg3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ocdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE120" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_c"/>
+ <speciesReference species="M_pg120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg120_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE140" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_c"/>
+ <speciesReference species="M_pg140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg140_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE141" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe141_c"/>
+ <speciesReference species="M_pg141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg141_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE160" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe160_c"/>
+ <speciesReference species="M_pg160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg160_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE161" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe161_c"/>
+ <speciesReference species="M_pg161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg161_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE180" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_c"/>
+ <speciesReference species="M_pg180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg180_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE181" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe181_c"/>
+ <speciesReference species="M_pg181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg181_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG120" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_c"/>
+ <speciesReference species="M_pg120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg120_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG140" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_c"/>
+ <speciesReference species="M_pg140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg140_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG141" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_c"/>
+ <speciesReference species="M_pg141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg141_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG160" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_c"/>
+ <speciesReference species="M_pg160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg160_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG161" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg161_c"/>
+ <speciesReference species="M_pg161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg161_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG180" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg180_c"/>
+ <speciesReference species="M_pg180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg180_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG181" name="Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg181_c"/>
+ <speciesReference species="M_pg181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg181_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E120" name="Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c"/>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E140" name="Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E141" name="Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe141_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E160" name="Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe160_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E161" name="Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe161_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E180" name="Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E181" name="Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe181_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G120" name="Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c"/>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G140" name="Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G141" name="Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G160" name="Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G161" name="Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg161_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_hdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G180" name="Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg180_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocdca_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G181" name="Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3825</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg181_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ocdcea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LSERDHr" name="L-serine dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1539</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2amsa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSDC" name="lysine decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0186 or b4131)</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 4.1.1.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_15dap_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSTRS" name="Lysyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4129 or b2890)</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ <speciesReference species="M_trnalys_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_lystrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSabcpp" name="L-lysine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2310 and b2307 and b2306 and b2308)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_lys_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSt2pp" name="L-lysine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2156</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_lys_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSt3pp" name="L-lysine transport out via proton antiport (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2923</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys_DASH_L_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lys_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYStex" name="L-lysine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYXI" name="Lyxose isomerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3903</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYXt2pp" name="L-Lyxose transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3907</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_lyx_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lyx_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYXtex" name="L-Lyxose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lyx_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_M1PD" name="mannitol-1-phosphate 5-dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3600</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl1p_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MACPD" name="Malonyl-ACP decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2323</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALCOAMT" name="Malonyl-CoA methyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0777</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c"/>
+ <speciesReference species="M_malcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c"/>
+ <speciesReference species="M_malcoame_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALDDH" name="malate decarboxylating oxidoreductase (decarboxylating)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1800</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.83</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_D_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALDt2_2pp" name="D-Malate transport via proton symport (2 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_mal_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mal_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALDtex" name="D-Malate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALS" name="malate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4014 or b2976)</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 4.1.3.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTATr" name="maltose O-acetyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0459</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.3.1.79</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_malt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmalt_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTHXabcpp" name="maltohexaose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4034 and b4033 and b4032 and b4035)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_malthx_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malthx_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTHXtexi" name="maltohexaose transport via diffusion (extracellular to periplasm) irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4036</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTPTabcpp" name="maltopentaose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4034 and b4033 and b4032 and b4035)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_maltpt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_maltpt_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTPTtexi" name="maltopentaoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4036</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltpt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTRabcpp" name="Maltotriose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4034 and b4033 and b4032 and b4035)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_malttr_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malttr_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTRtexi" name="Maltotriose transport via diffusion (extracellular to periplasm) irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4036</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malttr_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTTRabcpp" name="maltotetraose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4034 and b4033 and b4032 and b4035)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_maltttr_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_maltttr_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTTRtexi" name="maltotetraoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4036</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltttr_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTabcpp" name="maltose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4034 and b4033 and b4032 and b4035)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_malt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malt_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTptspp" name="maltose transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2417 and b1621 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_malt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTtexi" name="maltoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4036</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALt2_2pp" name="Malate transport via proton symport (2 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_mal_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALt2_3pp" name="Malate transport via proton symport (3 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4123 or b4138)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ <speciesReference species="M_mal_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALt3pp" name="L-malate transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mal_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALtex" name="Malate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN1PT2" name="mannose-1-phosphate guanylyltransferase (GDP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2049</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.7.7.22</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_man1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpmann_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN6PI" name="mannose-6-phosphate isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1613</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN6Pt6_2pp" name="Mannose-6-phosphate transport via phosphate antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3666</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ <speciesReference species="M_man6p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c"/>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN6Ptex" name="Mannose 6-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANAO" name="Mannonate oxidoreductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4323</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.57</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mana_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANGLYCptspp" name="2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0731 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_manglyc_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6pglyc_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANGLYCtex" name="2-O-alpha-mannosyl-D-glycerate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_manglyc_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_manglyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANPGH" name="2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0732</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_man6pglyc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_DASH_R_c"/>
+ <speciesReference species="M_man6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANptspp" name="D-mannose transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1817 and b1818 and b1819 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_man_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANtex" name="D-mannose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCITD" name="2-methylcitrate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0334</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.79</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mcit_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2mcacn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCITL2" name="methylisocitrate lyase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0331</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.3.30</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_micit_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCITS" name="2-methylcitrate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0333</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.3.31</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_oaa_c"/>
+ <speciesReference species="M_ppcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2mcit_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCOATA" name="Malonyl-CoA-ACP transacylase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b1092)</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ <p>EC Number: 2.3.1.39</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_malcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCPST" name="3-mercaptopyruvate sulfurtransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2521</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 2.8.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_c"/>
+ <speciesReference species="M_mercppyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_tcynt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCTP1App" name="murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0084 or b0635 or b0149 or b3396)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein5px4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCTP1Bpp" name="murein crosslinking transpeptidase 1B:(A2pm->A2pm) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0149 or b3396)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p"/>
+ <speciesReference species="M_murein5px3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCTP2App" name="murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0084 or b0635 or b3396 or b0149)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p5p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p" stoichiometry="2"/>
+ <speciesReference species="M_murein5px4px4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP1pp" name="murein D,D-carboxypeptidase (murein5px4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0632 or b3182 or b0839 or b2010)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.16.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5px4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein4px4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP2pp" name="murein D,D-carboxypeptidase (murein5px4px4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0632 or b3182 or b0839 or b2010)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.16.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5px4px4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein4px4px4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP3pp" name="murein D,D-carboxypeptidase (murein5p5p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0632 or b3182 or b0839 or b2010)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.16.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5p5p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein5p4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP4pp" name="murein D,D-carboxypeptidase (murein5p4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0632 or b3182 or b0839 or b2010)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.16.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5p4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein4p4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP5pp" name="murein D,D-carboxypeptidase (murein5p3p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0632 or b3182 or b0839 or b2010)</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.16.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5p3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein4p3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP1pp" name="murein D,D-endopeptidase (murein4px4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3182 or b2328 or b2134)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein4px4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP2pp" name="murein D,D-endopeptidase (murein3px4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3182 or b2328 or b2134)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein3px4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP3pp" name="murein D,D-endopeptidase (murein5px4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3182 or b2328 or b2134)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5px4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP4pp" name="murein D,D-endopeptidase (murein4px4px4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3182 or b2328 or b2134)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein4px4px4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4p4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDH" name="malate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3236</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 1.1.1.37</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDH2" name="Malate dehydrogenase (ubiquinone 8 as acceptor)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2210</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 1.1.99.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDH3" name="Malate dehydrogenase (menaquinone 8 as acceptor)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2210</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 1.1.99.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ME1" name="malic enzyme (NAD)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1479</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 1.1.1.38</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ME2" name="malic enzyme (NADP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2463</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 1.1.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MECDPDH5" name="2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2895 and b2515) or (b0684 and b2515))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mecdp_c"/>
+ <speciesReference species="M_flxr_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_flxso_c" stoichiometry="2"/>
+ <speciesReference species="M_h2mb4p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MECDPS" name="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2746</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2p4c2me_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2mecdp_c"/>
+ <speciesReference species="M_cmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MELIBt2pp" name="melibiose transport in via symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4120</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_melib_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_melib_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MELIBt3ipp" name="melibiose transport in via antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_melib_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MELIBtex" name="melibiose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_melib_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MEOHtex" name="Methanol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_meoh_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_meoh_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MEOHtrpp" name="Methanol reversible transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_meoh_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_meoh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MEPCT" name="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2747</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2me4p_c"/>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4c2me_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METAT" name="methionine adenosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2942</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 2.5.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amet_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METDabcpp" name="D-methionine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0198 and b0199 and b0197)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_met_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_met_DASH_D_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METDtex" name="D-methionine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METOX1s" name="methionine oxidation (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_metsox_DASH_S_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METOX2s" name="methionine oxidation 2 (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_metsox_DASH_R_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METS" name="methionine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4019 or b3829)</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 2.1.1.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mthf_c"/>
+ <speciesReference species="M_hcys_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX1abcpp" name="L-methionine S-oxide transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_metsox_DASH_S_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_metsox_DASH_S_DASH_L_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX1tex" name="L-methionine S-oxide diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox_DASH_S_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox_DASH_S_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX2abcpp" name="L-methionine R-oxide transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_metsox_DASH_R_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_metsox_DASH_R_DASH_L_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX2tex" name="L-methionine R-oxide diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox_DASH_R_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox_DASH_R_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOXR1" name="L-methionine-S-oxide reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b4219 and b2582) or (b4219 and b3781) or (b3551 and b2582) or (b3551 and b3781))</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 1.8.4.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox_DASH_S_DASH_L_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOXR2" name="L-methionine-R-sulfoxide reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1778 and b2582) or (b1778 and b3781))</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox_DASH_R_DASH_L_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METTRS" name="Methionyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2114</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ <speciesReference species="M_trnamet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_mettrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METabcpp" name="L-methionine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0198 and b0199 and b0197)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_met_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METtex" name="L-methionine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2t3_2pp" name="magnesium (Mg+2) transport in/out via proton antiport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mg2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2tex" name="magnesium (Mg+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2tpp" name="magnesium (+2) transport in via diffusion" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3816</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2uabcpp" name="Magnesium (Mg+2) ABC transporter (ubtake, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4242</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mg2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mg2_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MGSA" name="methylglyoxal synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0963</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ <p>EC Number: 4.2.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mthgxl_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MI1PP" name="myo-inositol 1-phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2533</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.1.3.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mi1p_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MICITDr" name="2-methylisocitrate dehydratase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0118</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.99</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mcacn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_micit_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MINCYCtex" name="Minocycline transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mincyc_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mincyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MINCYCtpp" name="Minocycline transport via TolC system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_mincyc_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mincyc_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MINOHPtexi" name="myo-inositol phosphate transport via diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_minohp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_minohp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP1App" name="murein L,D-carboxypeptidase (murein5px4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.17.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5px4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p"/>
+ <speciesReference species="M_murein3px4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP1Bpp" name="murein L,D-carboxypeptidase (murein4p4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.17.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein4p4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein4p3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP2App" name="murein L,D-carboxypeptidase (murein5p5p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.17.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5p5p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p"/>
+ <speciesReference species="M_murein5p3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP2Bpp" name="murein L,D-carboxypeptidase (murein4p3p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.17.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein4p3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_p"/>
+ <speciesReference species="M_murein3p3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP3App" name="murein L,D-carboxypeptidase (murein5px3p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: 3.4.17.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5px3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p"/>
+ <speciesReference species="M_murein3px3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDEP1pp" name="murein L,D-endopeptidase (murein3px3p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein3px3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein3p3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDEP2pp" name="murein L,D-endopeptidase (murein5px3p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_murein5px3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p3p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG1" name="Maltodextrin glucosidase (maltotriose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0403</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_malttr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_malt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG2" name="Maltodextrin glucosidase (maltotetraose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0403</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_maltttr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_malttr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG3" name="Maltodextrin glucosidase (maltopentaose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0403</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_maltpt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_maltttr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG4" name="Maltodextrin glucosidase (maltohexaose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0403</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_malthx_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_maltpt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG5" name="Maltodextrin glucosidase (maltoheptaose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0403</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_malthp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ <speciesReference species="M_malthx_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY1pp" name="murein lytic transglycosylase (murein4p4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2558 or b2963 or b4392 or b2813 or b2701 or b1193)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY2pp" name="murein lytic transglycosylase (murein4p3p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1193 or b2558 or b2963 or b4392 or b2813 or b2701)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_p"/>
+ <speciesReference species="M_anhgm4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY3pp" name="murein lytic transglycosylase (murein3p3p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1193 or b2963 or b2558 or b4392 or b2813 or b2701)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein3p3p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY4pp" name="murein lytic transglycosylase (murein4px4p4p) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2701 or b1193 or b2963 or b2558 or b4392 or b2813)</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4px4p4p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_p"/>
+ <speciesReference species="M_murein4px4p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTP1" name="Maltodextrin phosphorylase (maltopentaose)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3417</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c"/>
+ <speciesReference species="M_maltttr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTP2" name="Maltodextrin phosphorylase (maltohexaose)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3417</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c"/>
+ <speciesReference species="M_maltpt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTP3" name="Maltodextrin phosphorylase (maltoheptaose)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3417</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c"/>
+ <speciesReference species="M_malthx_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MMCD" name="Methylmalonyl-CoA decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2919</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mmcoa_DASH_S_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_ppcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MMETt2pp" name="S-methylmethionine permease (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0260</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_mmet_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mmet_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MMETtex" name="S-methyl-L-methionine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmet_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mmet_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MMM" name="Methylmalonyl-CoA mutase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2917</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.4.99.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mmcoa_DASH_S_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MN2t3pp" name="manganese (Mn+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3915 or b0752)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mn2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MN2tpp" name="manganese transport in via permease (no H+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3040</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MN6PP" name="mannose 6-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0822</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_man6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNLptspp" name="mannitol transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3599 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_mnl_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mnl1p_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNLtex" name="mannitol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mnl_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNNH" name="D-mannonate hydrolyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4322</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mana_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNt2pp" name="manganese (Mn+2) transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2392</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_mn2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mn2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNtex" name="Manganese (Mn+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOADSUx" name="MoaD sulfuration (nadh, assumed)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2530 and b0784)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_iscssh_c"/>
+ <speciesReference species="M_moadamp_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_iscs_c"/>
+ <speciesReference species="M_moadcosh_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOAT" name="3-deoxy-D-manno-octulosonic acid transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3633</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ckdo_c"/>
+ <speciesReference species="M_lipidA_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_kdolipid4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOAT2" name="3-deoxy-D-manno-octulosonic acid transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3633</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ckdo_c"/>
+ <speciesReference species="M_kdolipid4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_kdo2lipid4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOAT3C" name="3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3624</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ckdo_c"/>
+ <speciesReference species="M_phphhlipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_kphphhlipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOBDabcpp" name="molybdate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0763 and b0764 and b0765) or (b2422 and b2424 and b2423 and b3917) or (b2422 and b2425 and b2424 and b2423))</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mobd_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mobd_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOBDtex" name="molybdate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mobd_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mobd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOCDS" name="molybdopterin cytidine dinucleotide synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2877</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_moco_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mococdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOCOS" name="molybdenum cofactor synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0827</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mobd_c"/>
+ <speciesReference species="M_mptamp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_cu2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_moco_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOGDS" name="molybdopterin guanine dinucleotide synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3857 or (b3857 and b3856))</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_moco_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mocogdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOHMT" name="3-methyl-2-oxobutanoate hydroxymethyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0134</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.1.2.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3mob_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mlthf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dhp_c"/>
+ <speciesReference species="M_thf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOX" name="malate oxidase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 1.1.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MPTAT" name="molybdopterin adenylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0009</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mpt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mptamp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MPTG" name="murein polymerizing transglycosylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3396 and b1069) or (b0149 and b1069) or (b1069 and b2519))</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uaagmda_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="2"/>
+ <speciesReference species="M_murein5p5p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MPTG2" name="murein polymerizing transglycosylase 2 (three linked units)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3396 and b1069) or (b0149 and b1069) or (b1069 and b2519))</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uaagmda_c"/>
+ <speciesReference species="M_murein5p5p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udcpdp_c"/>
+ <speciesReference species="M_murein5p5p5p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MPTS" name="molybdopterin synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0784 and b0785)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpmp_c"/>
+ <speciesReference species="M_cu2_c"/>
+ <speciesReference species="M_moadcosh_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="5"/>
+ <speciesReference species="M_moadcoo_c" stoichiometry="2"/>
+ <speciesReference species="M_mpt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MPTSS" name="molybdopterin synthase sulfurylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0826</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_moadcoo_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_moadamp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MSAR" name="malonic semialdehyde reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1008 or b1539)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_msa_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpp_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MSO3abcpp" name="methanesulfonate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0936 and b0933 and b0934)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mso3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mso3_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MSO3tex" name="methanesulfonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mso3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mso3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTAN" name="methylthioadenosine nucleosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0159</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 3.2.2.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mta_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mtr_c"/>
+ <speciesReference species="M_ade_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTHFC" name="methenyltetrahydrofolate cyclohydrolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0529</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 3.5.4.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_methf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_10fthf_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTHFD" name="methylenetetrahydrofolate dehydrogenase (NADP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0529</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 1.5.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mlthf_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_methf_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTHFR2" name="5,10-methylenetetrahydrofolate reductase (NADH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3941</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 1.5.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mlthf_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mthf_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTHTHFSs" name="(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mdhdhf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mththf_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTRPOX" name="N-methyltryptophan oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1059</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 1.5.3.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_Nmtrp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_c"/>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_trp_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_N2Otex" name="nitrious oxide transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_N2Otpp" name="nitrious oxide transport (diffusion)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NACODA" name="N-acetylornithine deacetylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3957</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acg5sa_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_glu5sa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NACtex" name="Nicotinic acid transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NACtpp" name="Nicotinic acid uptake (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADDP" name="NAD diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3996 or b2411)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.6.1.22</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nmn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH10" name="NADH dehydrogenase (menaquinone-8 & 0 protons)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1109</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.5.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH16pp" name="NADH dehydrogenase (ubiquinone-8 & 3 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.5.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH17pp" name="NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.5.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH18pp" name="NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.5.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH5" name="NADH dehydrogenase (ubiquinone-8 )" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1109</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.5.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH9" name="NADH dehydrogenase (demethylmenaquinone-8 & 0 protons)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1109</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.5.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADK" name="NAD kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2615</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.23</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADN" name="NAD nucleosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.2.2.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adprib_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ncam_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPHQR2" name="NADPH Quinone Reductase (Ubiquinone-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3028</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.99.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPHQR3" name="NADPH Quinone Reductase (Menaquinone-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3028</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.99.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPHQR4" name="NADPH Quinone Reductase (2-Demethylmenaquinone-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3028</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.99.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPPPS" name="NADP phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADS1" name="NAD synthase (nh3)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1740</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.3.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dnad_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADTRHD" name="NAD transhydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3962 or (b1602 and b1603))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAMNPP" name="nicotinic acid mononucleotide pyrophosphorylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0931</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.4.2.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nac_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_nicrnt_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAt3_1p5pp" name="sodium proton antiporter (H:NA is 1.5) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1186</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c" stoichiometry="2"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_na1_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAt3_2pp" name="sodium proton antiporter (H:NA is 2) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0019</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAt3pp" name="sodium transport out via proton antiport (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0842 or b1216)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_na1_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAtex" name="sodium transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK1" name="nucleoside-diphosphate kinase (ATP:GDP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0474 or b2518)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gtp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK2" name="nucleoside-diphosphate kinase (ATP:UDP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0474 or b2518)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_utp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK3" name="nucleoside-diphosphate kinase (ATP:CDP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2518 or b0474)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_cdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ctp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK4" name="nucleoside-diphosphate kinase (ATP:dTDP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0474 or b2518)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dtdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dttp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK5" name="nucleoside-diphosphate kinase (ATP:dGDP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0474 or b2518)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dgdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dgtp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK6" name="nucleoside-diphosphate kinase (ATP:dUDP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2518 or b0474)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dudp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dutp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK7" name="nucleoside-diphosphate kinase (ATP:dCDP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0474 or b2518)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dcdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dctp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK8" name="nucleoside-diphosphate kinase (ATP:dADP)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0474 or b2518)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_datp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NH4tex" name="ammonia transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NH4tpp" name="ammonia reversible transport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0451 or s0001)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NHFRBO" name="NADH:flavorubredoxin oxidoreductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2710 and b2711)</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_no_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_n2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2abcpp" name="Nickle (Ni+2) ABC transporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3469</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ni2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ni2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2t3pp" name="nickle (Ni+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3915 or b0752)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ni2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2tex" name="nickel transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2tpp" name="nickel (+2) transport in via permease (no H+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3816</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2uabcpp" name="nickel transport via ABC system (uptake, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3476 and b3477 and b3478 and b3479 and b3480) or b4242)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ni2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ni2_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNAT" name="nicotinamide-nucleotide adenylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4390 or b0639)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.7.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nmn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNDA" name="nicotinamide-nucleotide amidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.5.1.42</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nmn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_nicrnt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNN" name="NMN nucleosidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.2.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nmn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ncam_c"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNPtpp" name="NMN permease (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0751</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNt7pp" name="NMN transport via NMN glycohydrolase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: 3.2.2.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nmn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ncam_c"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNtex" name="NMN transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNAM" name="nicotinamidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1768</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.5.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ncam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNATr" name="nicotinate-nucleotide adenylyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0639</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.7.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nicrnt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dnad_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNDMBRT" name="Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1991</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmbzid_c"/>
+ <speciesReference species="M_nicrnt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5prdmbz_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nac_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNDPR" name="nicotinate-nucleotide diphosphorylase (carboxylating)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0109</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.4.2.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_prpp_c"/>
+ <speciesReference species="M_quln_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nicrnt_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO2t2rpp" name="nitrite transport in via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3367 or b1223)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_no2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_no2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO2tex" name="nitrite transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R1bpp" name="Nitrate reductase (Ubiquinol-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2203 and b2206) and b2202 and b2205 and b2204)</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 1.7.99.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c"/>
+ <speciesReference species="M_no3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_no2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R1pp" name="Nitrate reductase (Ubiquinol-8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1465 and b1466 and b1467 and b1468) or (b1224 and b1225 and b1226 and b1227))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.7.99.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_no3_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_no2_c"/>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R2bpp" name="Nitrate reductase (Menaquinol-8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2203 and b2206) and b2202)</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 1.7.99.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_no3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_no2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R2pp" name="Nitrate reductase (Menaquinol-8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1465 and b1466 and b1467 and b1468) or (b1224 and b1225 and b1226 and b1227))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_no3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_no2_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3t7pp" name="nitrate transport in via nitrite antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1223 or b1469)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_c"/>
+ <speciesReference species="M_no3_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no3_c"/>
+ <speciesReference species="M_no2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3tex" name="nitrate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b0241 or b0929 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NODOx" name="nitric oxide dioxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2552</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 1.14.12.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_no_c" stoichiometry="2"/>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_no3_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NODOy" name="nitric oxide dioxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2552</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 1.14.12.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_no_c" stoichiometry="2"/>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_no3_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NOVBCNtex" name="Novobiocin transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_novbcn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_novbcn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NOVBCNtpp" name="Novobiocin transport via TolC system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_novbcn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_novbcn_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NOtex" name="nitric oxide transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NOtpp" name="NO transport (diffusion)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD1" name="5'-nucleotidase (dUMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2291 or b2744 or b4374)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD10" name="5'-nucleotidase (XMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2744</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_xmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_xtsn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD10pp" name="5'-nucleotidase (XMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_xmp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_xtsn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD11" name="5'-nucleotidase (IMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2744</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_imp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD11pp" name="5'-nucleotidase (IMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_imp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD12" name="5'-nucleotidase (dIMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2291 or b2744)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD12pp" name="5'-nucleotidase (dIMP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD1pp" name="5'-nucleotidase (dUMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD2" name="5'-nucleotidase (UMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2744 or b4374)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_uri_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD2pp" name="5'-nucleotidase (UMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_ump_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_uri_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD3" name="5'-nucleotidase (dCMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2744 or b2291)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD3pp" name="5'-nucleotidase (dCMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD4" name="5'-nucleotidase (CMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2744</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD4pp" name="5'-nucleotidase (CMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD5" name="5'-nucleotidase (dTMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2291 or b2744 or b4374)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_thymd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD5pp" name="5'-nucleotidase (dTMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_thymd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD6" name="5'-nucleotidase (dAMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2291 or b2744)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad_DASH_2_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD6pp" name="5'-nucleotidase (dAMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad_DASH_2_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD7" name="5'-nucleotidase (AMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2744</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD7pp" name="5'-nucleotidase (AMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD8" name="5'-nucleotidase (dGMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2291 or b2744)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD8pp" name="5'-nucleotidase (dGMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD9" name="5'-nucleotidase (GMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2744</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD9pp" name="5'-nucleotidase (GMP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0480 or b4055)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP1" name="nucleoside-triphosphatase (ATP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0650 or b4161)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP10" name="nucleoside-triphosphatase (ITP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4161 or b4394)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_itp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_idp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP11" name="nucleoside-triphosphatase (dITP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4394</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ditp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_didp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP12" name="nucleoside-triphosphatase (XTP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4394</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_xtp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_xdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP3" name="nucleoside-triphosphatase (GTP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4161</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP3pp" name="nucleoside-triphosphatase (GTP) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0980</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_p"/>
+ <speciesReference species="M_h2o_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP5" name="nucleoside-triphosphatase (CTP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4161</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP1" name="Nucleoside triphosphate pyrophosphorylase (dgtp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0099 or b2781)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP10" name="Nucleoside triphosphate pyrophosphorylase (ditp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2954</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ditp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dimp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP11" name="Nucleoside triphosphate pyrophosphorylase (xtp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2954</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_xtp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_xmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP2" name="Nucleoside triphosphate pyrophosphorylase (gtp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0099 or b2781)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP3" name="Nucleoside triphosphate pyrophosphorylase (dctp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2781 or b2251 or b1759)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP4" name="Nucleoside triphosphate pyrophosphorylase (ctp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1759 or b2781)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP5" name="Nucleoside triphosphate pyrophosphorylase (datp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2781 or b1865)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_datp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_damp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP6" name="Nucleoside triphosphate pyrophosphorylase (atp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2781</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP7" name="Nucleoside triphosphate pyrophosphorylase (dttp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2781 or b2251)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dttp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP8" name="Nucleoside triphosphate pyrophosphorylase (utp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2781</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_utp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP9" name="Nucleoside triphosphate pyrophosphorylase (itp)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2954</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.6.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_itp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_imp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPTP1" name="Nucleoside triphosphate tripolyhydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0160</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.5.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_c"/>
+ <speciesReference species="M_pppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPTP2" name="Nucleoside triphosphate tripolyhydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0160</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.5.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_c"/>
+ <speciesReference species="M_pppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTRIR2x" name="nitrite Reductase (NADH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3365 and b3366)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="5"/>
+ <speciesReference species="M_nadh_c" stoichiometry="3"/>
+ <speciesReference species="M_no2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_nad_c" stoichiometry="3"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTRIR3pp" name="nitrite Reductase (Ubiquinole-8, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4070 and b4071 and b4072 and b4073)</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="3"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_no2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="3"/>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ <speciesReference species="M_nh4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTRIR4pp" name="nitrite Reductase (Menaquinole-8, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4070 and b4071 and b4072 and b4073)</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="3"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_no2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="3"/>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ <speciesReference species="M_nh4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16A4COLIPAabctex" name="O16 antigen (x4) core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_o16a4colipa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_o16a4colipa_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16A4Lpp" name="O16 anitgen (x4) ligase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3622</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p"/>
+ <speciesReference species="M_o16a4und_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_o16a4colipa_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16AP1pp" name="O16 antigen polymerase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2035 and b2027)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o16aund_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_o16a2und_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16AP2pp" name="O16 antigen polymerase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2035 and b2027)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o16a2und_p"/>
+ <speciesReference species="M_o16aund_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_o16a3und_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16AP3pp" name="O16 antigen polymerase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2035 and b2027)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o16a3und_p"/>
+ <speciesReference species="M_o16aund_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_o16a4und_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16AT" name="rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2033</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_ragund_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aragund_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16AUNDtpp" name="O16 antigen (flippase, cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2037</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o16aund_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o16aund_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16GALFT" name="galactofuranosyltransferase (LPS O16 antigen biosynthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2034</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_garagund_c"/>
+ <speciesReference species="M_udpgalfur_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gfgaragund_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16GLCT1" name="glucosyltransferase I (LPS O16 antigen biosynthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2032</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aragund_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_garagund_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O16GLCT2" name="glucosyltransferase II (LPS O16 antigen biosynthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gfgaragund_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_o16aund_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O2Stex" name="superoxide anion transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2s_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O2tex" name="oxygen transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O2tpp" name="o2 transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAADC" name="oxaloacetate decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1850</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 4.1.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OBTFL" name="2-Oxobutanoate formate lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (((b0902 and b0903) and b2579) or (b0902 and b0903) or (b0902 and b3114))</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2obut_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_ppcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCBT" name="ornithine carbamoyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4254 or b0273)</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.1.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbp_c"/>
+ <speciesReference species="M_orn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_citr_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCDCAtexi" name="Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2344</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCDCEAtexi" name="Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2344</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCTAtex" name="Octanoate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octa_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCTDPS" name="Octaprenyl pyrophosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3187</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="5"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octdp_c"/>
+ <speciesReference species="M_ppi_c" stoichiometry="5"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCTNLL" name="Octanoate non-lipoylated apo domain ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4386</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_octa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_octapb_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OGMEACPD" name="3-Oxo-glutaryl-[ACP] methyl ester dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0180</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.2.1.59</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hgmeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_egmeACP_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OGMEACPR" name="3-Oxo-glutaryl-[ACP] methyl ester reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_ogmeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hgmeACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OGMEACPS" name="3-Oxo-glutaryl-[ACP] methyl ester synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1091</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ <speciesReference species="M_malcoame_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_ogmeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OHPBAT" name="O-Phospho-4-hydroxy-L-threonine:2-oxoglutarate aminotransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0907</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.6.1.52</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_ohpb_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_phthr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OHPHM" name="2-octaprenyl-6-hydroxyphenol methylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2232</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ohph_c"/>
+ <speciesReference species="M_amet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omph_c"/>
+ <speciesReference species="M_ahcys_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMBZLM" name="2-Octaprenyl-6-methoxy-benzoquinol methylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3833</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ombzl_c"/>
+ <speciesReference species="M_amet_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ommbl_c"/>
+ <speciesReference species="M_ahcys_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMCDC" name="2-Oxo-4-methyl-3-carboxypentanoate decarboxylation" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c4mop_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4mop_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMMBLHX" name="2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0662</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ommbl_c"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omhmbl_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMMBLHX3" name="2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (anaerobic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ommbl_c"/>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omhmbl_c"/>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMPDC" name="orotidine-5'-phosphate decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1281</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 4.1.1.23</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_orot5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMPHHX" name="2-octaprenyl-6-methoxyphenol hydroxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2907</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2omph_c"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ombzl_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMPHHX3" name="2-octaprenyl-6-methoxyphenol hydroxylase (anaerobic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2omph_c"/>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ombzl_c"/>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OP4ENH" name="2-oxopent-4-enoate hydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0350</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.80</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_op4en_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4h2opntn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPHBDC" name="Octaprenyl-hydroxybenzoate decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3843 and b2311)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ophb_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2oph_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPHHX" name="2-Octaprenylphenol hydroxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3835</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2oph_c"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ohph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPHHX3" name="2-Octaprenylphenol hydroxylase (anaerobic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2oph_c"/>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ohph_c"/>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPMEACPD" name="3-Oxo-pimeloyl-[ACP] methyl ester dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0180</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.2.1.59</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hpmeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_epmeACP_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPMEACPR" name="3-Oxo-pimeloyl-[ACP] methyl ester reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1093</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.1.1.100</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_opmeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hpmeACP_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPMEACPS" name="3-Oxo-pimeloyl-[ACP] methyl ester synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2323</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.3.1.41</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmeACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_malACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_opmeACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORNDC" name="Ornithine Decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2965 or b0693)</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 4.1.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_orn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_ptrc_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORNabcpp" name="ornithine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2310 and b2307 and b2306 and b2308)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_orn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_orn_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORNtex" name="ornithine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OROTt2_2pp" name="Orotate transport via proton symport (2 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_orot_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_orot_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OROTtex" name="Orotate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORPT" name="orotate phosphoribosyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3642</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 2.4.2.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot5p_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OXAMTC" name="oxamate transcarbamoylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 2.1.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oxur_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbp_c"/>
+ <speciesReference species="M_oxam_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OXCDC" name="Oxalyl-CoA decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2373</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_oxalcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_forcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OXCOAHDH" name="oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1387</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2oxpaccoa_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3oxdhscoa_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OXDHCOAT" name="3-oxo-5,6-dehydrosuberyl-CoA thiolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1394 and b1397)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oxdhscoa_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhacoa_c"/>
+ <speciesReference species="M_accoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_P5CD" name="1-pyrroline-5-carboxylate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1014</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.5.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1pyr5c_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_P5CR" name="pyrroline-5-carboxylate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0386</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.5.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1pyr5c_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_pro_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA120abcpp" name="phosphatidate transport via ABC system (n-C12:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pa120_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA140abcpp" name="phosphatidate transport via ABC system (n-C14:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pa140_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA141abcpp" name="phosphatidate transport via ABC system (n-C14:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pa141_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA160abcpp" name="phosphatidate transport via ABC system (n-C16:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pa160_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA161abcpp" name="phosphatidate transport via ABC system (n-C16:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pa161_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA180abcpp" name="phosphatidate transport via ABC system (n-C18:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pa180_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA181abcpp" name="phosphatidate transport via ABC system (n-C18:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pa181_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PACALDt2rpp" name="phenylacetaldehyde reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pacald_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pacald_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PACALDtex" name="phenethylacetaldehyde transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pacald_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pacald_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PACCOAE" name="ring 1,2-phenylacetyl-CoA epoxidase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1388 and b1389 and b1390 and b1391 and b1392)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_phaccoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_rephaccoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PACCOAL" name="phenylacetate-CoA ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1398</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 6.2.1.30</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_pac_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_phaccoa_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PANTS" name="pantothenate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0133</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.3.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_B_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pant_DASH_R_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pnto_DASH_R_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA120" name="Phosphatidate phosphatase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr120_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA120pp" name="Phosphatidate phosphatase (periplasmic, n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr120_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA140" name="Phosphatidate phosphatase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr140_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA140pp" name="Phosphatidate phosphatase (periplasmic, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr140_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA141" name="Phosphatidate phosphatase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA141pp" name="Phosphatidate phosphatase (periplasmic, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA160" name="Phosphatidate phosphatase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA160pp" name="Phosphatidate phosphatase (periplasmic, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA161" name="Phosphatidate phosphatase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA161pp" name="Phosphatidate phosphatase (periplasmic, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA180" name="Phosphatidate phosphatase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr180_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA180pp" name="Phosphatidate phosphatase (periplasmic, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr180_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA181" name="Phosphatidate phosphatase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pa181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA181pp" name="Phosphatidate phosphatase (periplasmic, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1278</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPPT3" name="phospho-N-acetylmuramoyl-pentapeptide-transferase (meso-2,6-diaminopimelate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0087</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.7.8.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c"/>
+ <speciesReference species="M_ugmda_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uagmda_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPSR" name="phosphoadenylyl-sulfate reductase (thioredoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2762 and b2582) or (b2762 and b3781))</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 1.8.4.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_paps_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pap_c"/>
+ <speciesReference species="M_so3_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPSR2" name="phosphoadenylyl-sulfate reductase (glutaredoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2762 and b0849) or (b2762 and b1064) or (b2762 and b1654) or (b2762 and b3610))</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 1.8.4.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c"/>
+ <speciesReference species="M_paps_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxox_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pap_c"/>
+ <speciesReference species="M_so3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDE1" name="3',5'-cyclic-nucleotide phosphodiesterase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1489</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.4.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_camp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDE4" name="3',5'-cyclic-nucleotide phosphodiesterase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1489</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.1.4.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_35cgmp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDH" name="pyruvate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0114 and b0115 and b0116)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDX5PO2" name="pyridoxine 5'-phosphate oxidase (anaerboic" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_pdx5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pydx5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDX5POi" name="pyridoxine 5'-phosphate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1638</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.4.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_pdx5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_pydx5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDX5PS" name="Pyridoxine 5'-phosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0052 and b2564)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl5p_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_phthr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_pdx5p_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDXPP" name="Pyridoxine 5-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0766</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pdx5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pydxn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE120abcpp" name="phosphatidylethanolamine transport via ABC system (n-C12:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pe120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pe120_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE140abcpp" name="phosphatidylethanolamine transport via ABC system (n-C14:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pe140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pe140_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE141abcpp" name="phosphatidylethanolamine transport via ABC system (n-C14:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pe141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pe141_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE160abcpp" name="phosphatidylethanolamine transport via ABC system (n-C16:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pe160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pe160_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE161abcpp" name="phosphatidylethanolamine transport via ABC system (n-C16:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pe161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pe161_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE180abcpp" name="phosphatidylethanolamine transport via ABC system (n-C18:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pe180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pe180_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE181abcpp" name="phosphatidylethanolamine transport via ABC system (n-C18:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pe181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pe181_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PEAMNOpp" name="Phenethylamine oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1386</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 1.4.3.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_o2_p"/>
+ <speciesReference species="M_peamn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_p"/>
+ <speciesReference species="M_nh4_p"/>
+ <speciesReference species="M_pacald_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PEAMNtex" name="phenethylamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_peamn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_peamn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PERD" name="Erythronate 4-phosphate (4per) dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2320</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4per_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_ohpb_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PETNT161pp" name="phosphoethanolamine transferase (c-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3546</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_p"/>
+ <speciesReference species="M_pe161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_p"/>
+ <speciesReference species="M_enlipa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PETNT181pp" name="phosphoethanolamine transferase (c-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3546</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_p"/>
+ <speciesReference species="M_pe181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_p"/>
+ <speciesReference species="M_enlipa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFK" name="phosphofructokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3916 or b1723)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.7.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_f6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fdp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFK_2" name="Phosphofructokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3916</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_tag6p_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_tagdp_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFK_3" name="phosphofructokinase (s7p)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3916</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 2.7.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_s7p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_s17bp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFL" name="pyruvate formate lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0902 and b0903) or (b0902 and b3114) or (b3951 and b3952) or ((b0902 and b0903) and b2579))</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_for_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG120abcpp" name="phosphatidylglycerol transport via ABC system (n-C12:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pg120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pg120_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG140abcpp" name="phosphatidylglycerol transport via ABC system (n-C14:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pg140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pg140_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG141abcpp" name="phosphatidylglycerol transport via ABC system (n-C14:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pg141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pg141_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG160abcpp" name="phosphatidylglycerol transport via ABC system (n-C16:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pg160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pg160_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG161abcpp" name="phosphatidylglycerol transport via ABC system (n-C16:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pg161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pg161_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG180abcpp" name="phosphatidylglycerol transport via ABC system (n-C18:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pg180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pg180_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG181abcpp" name="phosphatidylglycerol transport via ABC system (n-C18:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pg181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pg181_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGAMT" name="phosphoglucosamine mutase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3176</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 5.4.2.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGCD" name="phosphoglycerate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2913</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 1.1.1.95</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3php_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGI" name="glucose-6-phosphate isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4025</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 5.3.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGK" name="phosphoglycerate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2926</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.7.2.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_13dpg_c"/>
+ <speciesReference species="M_adp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGL" name="6-phosphogluconolactonase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0767</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 3.1.1.31</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6pgl_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgc_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGLYCP" name="Phosphoglycolate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3385</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.1.3.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pglyc_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGM" name="phosphoglycerate mutase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3612 or b4395 or b0755)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 5.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGMT" name="phosphoglucomutase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2690 or b0688)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.4.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP120abcpp" name="phosphatidylglycerophosphate transport via ABC system (n-C12:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pgp120_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP140abcpp" name="phosphatidylglycerophosphate transport via ABC system (n-C14:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pgp140_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP141abcpp" name="phosphatidylglycerophosphate transport via ABC system (n-C14:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pgp141_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP160abcpp" name="phosphatidylglycerophosphate transport via ABC system (n-C16:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pgp160_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP161abcpp" name="phosphatidylglycerophosphate transport via ABC system (n-C16:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pgp161_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP180abcpp" name="phosphatidylglycerophosphate transport via ABC system (n-C18:0, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pgp180_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP181abcpp" name="phosphatidylglycerophosphate transport via ABC system (n-C18:1, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0914</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pgp181_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP120" name="phosphatidylglycerol phosphate phosphatase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1278 or b0418)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP120pp" name="phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pgp120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP140" name="phosphatidylglycerol phosphate phosphatase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1278 or b0418)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg140_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP140pp" name="phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pgp140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg140_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP141" name="phosphatidylglycerol phosphate phosphatase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1278 or b0418)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP141pp" name="phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pgp141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP160" name="phosphatidylglycerol phosphate phosphatase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg160_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP160pp" name="phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pgp160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg160_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP161" name="phosphatidylglycerol phosphate phosphatase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1278 or b0418)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP161pp" name="phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pgp161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP180" name="phosphatidylglycerol phosphate phosphatase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg180_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP180pp" name="phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pgp180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg180_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP181" name="phosphatidylglycerol phosphate phosphatase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1278 or b0418)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pgp181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP181pp" name="phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0418 or b1278)</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.3.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pgp181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA120" name="Phosphatidylglycerol synthase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1912</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdddecg_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pgp120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA140" name="Phosphatidylglycerol synthase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1912</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdecg_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pgp140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA141" name="Phosphatidylglycerol synthase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1912</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdec7eg_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pgp141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA160" name="Phosphatidylglycerol synthase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1912</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdecg_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pgp160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA161" name="Phosphatidylglycerol synthase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1912</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdec9eg_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pgp161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA180" name="Phosphatidylglycerol synthase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1912</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodecg_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pgp180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA181" name="Phosphatidylglycerol synthase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1912</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodec11eg_c"/>
+ <speciesReference species="M_glyc3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pgp181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEMEabcpp" name="protoheme transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2201 and b2200 and b2199 and b2198 and b2197)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pheme_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pheme_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEMEtiex" name="protoheme transport irreversible out via diffusion (periplasm to extracellular)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pheme_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHETA1" name="phenylalanine transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4054 or b0928 or b3770)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 2.6.1.58</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_phe_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_phpyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHETRS" name="Phenylalanyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1713 and b1714)</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_phe_DASH_L_c"/>
+ <speciesReference species="M_trnaphe_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_phetrna_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEt2rpp" name="L-phenylalanine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1473 or b0112 or b0576)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_phe_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_phe_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEtex" name="L-phenylalanine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phe_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHYTSpp" name="Phytase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0980</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="6"/>
+ <speciesReference species="M_minohp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_p"/>
+ <speciesReference species="M_pi_p" stoichiometry="6"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PIt2rpp" name="phosphate reversible transport via symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2987 or b3493)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PItex" name="phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PIuabcpp" name="phosphate transport via ABC system (uptake, periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3726 and b3725 and b3727 and b3728)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A120pp" name="Phospholipase A1 (phosphatidate, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddecg3p_p"/>
+ <speciesReference species="M_ddca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A140pp" name="Phospholipase A1 (phosphatidate, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdecg3p_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A141pp" name="Phospholipase A1 (phosphatidate, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdec7eg3p_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A160pp" name="Phospholipase A1 (phosphatidate, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdecg3p_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A161pp" name="Phospholipase A1 (phosphatidate, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdec9eg3p_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A180pp" name="Phospholipase A1 (phosphatidate, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odecg3p_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A181pp" name="Phospholipase A1 (phosphatidate, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odec11eg3p_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E120pp" name="Phospholipase A1 (phosphatidylethanolamine, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe120_p"/>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E140pp" name="Phospholipase A1 (phosphatidylethanolamine, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe140_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E141pp" name="Phospholipase A1 (phosphatidylethanolamine, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe141_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E160pp" name="Phospholipase A1 (phosphatidylethanolamine, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E161pp" name="Phospholipase A1 (phosphatidylethanolamine, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe161_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E180pp" name="Phospholipase A1 (phosphatidylethanolamine, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe180_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E181pp" name="Phospholipase A1 (phosphatidylethanolamine, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe181_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G120pp" name="Phospholipase A1 (phosphatidylglycerol, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg120_p"/>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G140pp" name="Phospholipase A1 (phosphatidylglycerol, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg140_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G141pp" name="Phospholipase A1 (phosphatidylglycerol, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg141_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G160pp" name="Phospholipase A1 (phosphatidylglycerol, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G161pp" name="Phospholipase A1 (phosphatidylglycerol, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg161_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G180pp" name="Phospholipase A1 (phosphatidylglycerol, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg180_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G181pp" name="Phospholipase A1 (phosphatidylglycerol, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg181_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A120pp" name="Phospholipase A2 (phosphatidate, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1ddecg3p_p"/>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A140pp" name="Phospholipase A2 (phosphatidate, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdecg3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A141pp" name="Phospholipase A2 (phosphatidate, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdec7eg3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A160pp" name="Phospholipase A2 (phosphatidate, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdecg3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A161pp" name="Phospholipase A2 (phosphatidate, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdec9eg3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A180pp" name="Phospholipase A2 (phosphatidate, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odecg3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A181pp" name="Phospholipase A2 (phosphatidate, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pa181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odec11eg3p_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E120pp" name="Phospholipase A2 (phosphatidylethanolamine, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe120_p"/>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E140pp" name="Phospholipase A2 (phosphatidylethanolamine, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe140_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E141pp" name="Phospholipase A2 (phosphatidylethanolamine, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe141_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E160pp" name="Phospholipase A2 (phosphatidylethanolamine, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe160_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E161pp" name="Phospholipase A2 (phosphatidylethanolamine, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe161_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E180pp" name="Phospholipase A2 (phosphatidylethanolamine, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe180_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E181pp" name="Phospholipase A2 (phosphatidylethanolamine, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pe181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe181_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G120pp" name="Phospholipase A2 (phosphatidylglycerol, n-C12:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg120_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg120_p"/>
+ <speciesReference species="M_ddca_p"/>
+ <speciesReference species="M_h_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G140pp" name="Phospholipase A2 (phosphatidylglycerol, n-C14:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg140_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg140_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G141pp" name="Phospholipase A2 (phosphatidylglycerol, n-C14:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg141_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg141_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G160pp" name="Phospholipase A2 (phosphatidylglycerol, n-C16:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg160_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg160_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G161pp" name="Phospholipase A2 (phosphatidylglycerol, n-C16:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg161_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg161_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_hdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G180pp" name="Phospholipase A2 (phosphatidylglycerol, n-C18:0) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg180_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg180_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G181pp" name="Phospholipase A2 (phosphatidylglycerol, n-C18:1) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3821</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 3.1.1.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pg181_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg181_p"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ocdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PMANM" name="phosphomannomutase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2048</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.4.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PMDPHT" name="pyrimidine phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aprbu_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4r5au_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PMEACPE" name="Pimeloyl-[ACP] methyl ester esterase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3412</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pmeACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_meoh_c"/>
+ <speciesReference species="M_pimACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PMPK" name="phosphomethylpyrimidine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2103</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.4.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4ampm_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2mahmp_c"/>
+ <speciesReference species="M_adp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PNTK" name="pantothenate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3974</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.33</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pnto_DASH_R_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ppan_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PNTOt4pp" name="Pantothenate sodium symporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3258</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p"/>
+ <speciesReference species="M_pnto_DASH_R_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_pnto_DASH_R_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PNTOtex" name="Pantothenate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto_DASH_R_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pnto_DASH_R_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_POAACR" name="peroxyaminoacrylate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1010</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_poaac_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amac_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_POR5" name="pyruvate synthase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0684 and b1378) or (b2895 and b1378))</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 1.2.7.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_flxso_c" stoichiometry="2"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_flxr_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_POX" name="pyruvate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0871</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.2.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPA" name="inorganic diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2744 or b4226 or b2502)</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 3.6.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPA2" name="inorganic triphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2502 or b2744)</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 3.6.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pppi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPAKr" name="Propionate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3115</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ppap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ppa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPALtex" name="propanal transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPALtpp" name="propanal transport via channel (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPAt4pp" name="Na+/Propionate symporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1015</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p"/>
+ <speciesReference species="M_ppa_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_ppa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPAtex" name="propionate transport via diffusion">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPBNGS" name="porphobilinogen synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0369</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.2.1.24</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aop_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_ppbng_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPC" name="phosphoenolpyruvate carboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3956</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 4.1.1.31</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pep_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_oaa_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPCDC" name="phosphopantothenoylcysteine decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3639</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.1.1.36</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4ppcys_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pan4p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPCK" name="phosphoenolpyruvate carboxykinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3403</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ <p>EC Number: 4.1.1.49</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pep_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPCSCT" name="Propanoyl-CoA: succinate CoA-transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2920</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppcoa_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_c"/>
+ <speciesReference species="M_succoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPGPPDP" name="guanosine-3',5'-bis(diphosphate) 3'-diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3650</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.1.7.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ppgpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPK2r" name="polyphosphate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2501</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 2.7.4.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_pppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPKr" name="polyphosphate kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2501</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 2.7.4.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPM" name="phosphopentomutase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3380 or b4383)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.4.2.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPM2" name="phosphopentomutase 2 (deoxyribose)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4383</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.4.2.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dr1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPNCL2" name="phosphopantothenate-cysteine ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3639</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.3.2.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4ppan_c"/>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ppcys_c"/>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPND" name="prephenate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2600</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 1.3.1.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_pphn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34hpp_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPNDH" name="prephenate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2599</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.2.1.51</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pphn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_phpyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPGO" name="protoporphyrinogen oxidase (aerobic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3850</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.3.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1.5"/>
+ <speciesReference species="M_pppg9_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ <speciesReference species="M_ppp9_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPGO3" name="protoporphyrinogen oxidase (anaerobic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3850</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.3.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_c" stoichiometry="3"/>
+ <speciesReference species="M_pppg9_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppp9_c"/>
+ <speciesReference species="M_succ_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPNDO" name="Phenylpropanoate Dioxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2538 and b2539 and b2540 and b2542)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_pppn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cechddd_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPNt2rpp" name="3-phenylpropionate transport via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2536</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pppn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pppn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPNtex" name="3-phenylpropionate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPS" name="phosphoenolpyruvate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1702</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.7.9.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPTHpp" name="Phosphonate hydrogenase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0383</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_ppt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_p"/>
+ <speciesReference species="M_pi_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPTtex" name="Phosphonate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAGSr" name="phosphoribosylglycinamide synthase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4005</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 6.3.4.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_pram_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_gar_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAIS" name="phosphoribosylaminoimidazole synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2499</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 6.3.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_fpram_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_air_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAIi" name="phosphoribosylanthranilate isomerase (irreversible)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1262</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 5.3.1.24</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pran_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2cpr5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAMPC" name="phosphoribosyl-AMP cyclohydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2026</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 3.5.4.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_prbamp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prfp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRASCSi" name="phosphoribosylaminoimidazolesuccinocarboxamide synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2476</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 6.3.2.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aizc_c"/>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_25aics_c"/>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRATPP" name="phosphoribosyl-ATP pyrophosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2026</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 3.6.1.31</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_prbatp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_prbamp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRFGS" name="phosphoribosylformylglycinamidine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2557</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ <p>EC Number: 6.3.5.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_fgam_c"/>
+ <speciesReference species="M_gln_DASH_L_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fpram_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRMICI" name="1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2024</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 5.3.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prfp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prlp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROD2" name="Proline dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1014</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.5.99.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_pro_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1pyr5c_c"/>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROGLYabcpp" name="L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3544 and b3543 and b3542 and b3541 and b3540)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_progly_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_progly_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROGLYtex" name="L-Prolinylglycine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_progly_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROTRS" name="Prolyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0194</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pro_DASH_L_c"/>
+ <speciesReference species="M_trnapro_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_protrna_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROabcpp" name="L-proline transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2677 and b2678 and b2679)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pro_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pro_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROt2rpp" name="L-proline reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4111</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pro_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pro_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROt4pp" name="Na+/Proline-L symporter (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1015</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p"/>
+ <speciesReference species="M_pro_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_pro_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROtex" name="L-proline transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRPPS" name="phosphoribosylpyrophosphate synthetase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1207</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ <p>EC Number: 2.7.6.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSCLYSt2pp" name="psicoselysine transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3370</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_psclys_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_psclys_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSCLYStex" name="psicoselysine transporter via diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_psclys_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_psclys_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSCVT" name="3-phosphoshikimate 1-carboxyvinyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0908</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 2.5.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_skm5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3psme_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD120" name="Phosphatidylserine decarboxylase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4160</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 4.1.1.65</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps120_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pe120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD140" name="Phosphatidylserine decarboxylase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4160</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 4.1.1.65</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps140_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pe140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD141" name="Phosphatidylserine decarboxylase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4160</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 4.1.1.65</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps141_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pe141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD160" name="Phosphatidylserine decarboxylase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4160</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 4.1.1.65</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps160_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pe160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD161" name="Phosphatidylserine decarboxylase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4160</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 4.1.1.65</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps161_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pe161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD180" name="Phosphatidylserine decarboxylase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4160</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 4.1.1.65</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps180_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pe180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD181" name="Phosphatidylserine decarboxylase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4160</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 4.1.1.65</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps181_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_pe181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSERT" name="phosphoserine transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0907</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 2.6.1.52</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3php_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_pser_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSERtex" name="phospho-L-serine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pser_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pser_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSP_L" name="phosphoserine phosphatase (L-serine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4388</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 3.1.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSP_Lpp" name="phospho-L-serine phosphatase (periplasmic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4055</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_pser_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_ser_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA120" name="Phosphatidylserine syntase (n-C12:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2585</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdddecg_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps120_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA140" name="Phosphatidylserine syntase (n-C14:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2585</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdecg_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps140_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA141" name="Phosphatidylserine syntase (n-C14:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2585</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdec7eg_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps141_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA160" name="Phosphatidylserine syntase (n-C16:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2585</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdecg_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps160_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA161" name="Phosphatidylserine syntase (n-C16:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2585</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdec9eg_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps161_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA180" name="Phosphatidylserine syntase (n-C18:0)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2585</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodecg_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps180_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA181" name="Phosphatidylserine syntase (n-C18:1)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2585</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ <p>EC Number: 2.7.8.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodec11eg_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ps181_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTA2" name="Phosphate acetyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2297</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ppcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_ppap_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTAr" name="phosphotransacetylase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2297 or b2458)</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>EC Number: 2.3.1.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_actp_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTHRpp" name="phospho-L-threonine phosphatase (periplasmic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4055</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_thrp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_thr_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTPATi" name="pantetheine-phosphate adenylyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3634</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.7.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pan4p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dpcoa_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCORNt7pp" name="putrescine/ornithine antiporter (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0692</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_c"/>
+ <speciesReference species="M_ptrc_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c"/>
+ <speciesReference species="M_orn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCTA" name="Putrescine Transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3073</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.6.1.29</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_ptrc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abutn_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCabcpp" name="putrescine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0854 and b0855 and b0856 and b0857) or (b1126 and b1125 and b1124 and b1123) or (b1440 and b1441 and b1442 and b1443))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_ptrc_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ptrc_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCt2pp" name="putrescine transport in via proton symport" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1296 or b0692)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ptrc_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ptrc_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCtex" name="putrescine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP1" name="purine-nucleoside phosphorylase (Adenosine)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4384</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c"/>
+ <speciesReference species="M_r1p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP2" name="purine-nucleoside phosphorylase (Deoxyadenosine)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4384</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad_DASH_2_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c"/>
+ <speciesReference species="M_ade_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP3" name="purine-nucleoside phosphorylase (Guanosine)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2407 or b4384)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_c"/>
+ <speciesReference species="M_r1p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP4" name="purine-nucleoside phosphorylase (Deoxyguanosine)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2407 or b4384)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c"/>
+ <speciesReference species="M_gua_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP5" name="purine-nucleoside phosphorylase (Inosine)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2407 or b4384)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_c"/>
+ <speciesReference species="M_r1p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP6" name="purine-nucleoside phosphorylase (Deoxyinosine)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2407 or b4384)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c"/>
+ <speciesReference species="M_hxan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP7" name="purine-nucleoside phosphorylase (Xanthosine)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2407</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_xtsn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c"/>
+ <speciesReference species="M_xan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYAM5PO" name="pyridoxamine 5'-phosphate oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1638</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 1.4.3.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_pyam5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pydx5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDAMK" name="pyridoxamine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2418</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pydam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyam5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDAMtex" name="pyridoxamine transport via diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0929 or b1377 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydam_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydam_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDAMtpp" name="pyridoxamine import" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydam_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydam_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXK" name="pyridoxal kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1636 or b2418)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pydx_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pydx5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXNK" name="pyridoxine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2418</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.35</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pydxn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pdx5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXNtex" name="pyridoxine transport via diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0929 or b1377 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXNtpp" name="pyridoxine import" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXPP" name="Pyridoxal 5-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0446 or b3826 or b0766)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_pydx5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_pydx_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXtex" name="pyridoxal transport via diffusion (extracellular)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0929 or b1377 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXtpp" name="pyridoxal import" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYK" name="pyruvate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1854 or b1676)</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 2.7.1.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pep_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYNP2r" name="pyrimidine-nucleoside phosphorylase (uracil)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3831</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_uri_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYROX" name="pyrimidine oxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1012 and b1007)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_uracp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYRt2rpp" name="pyruvate reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pyr_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYRtex" name="pyruvate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QMO2" name="quinol monooxygenase (Ubiquinol-8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3029</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2"/>
+ <speciesReference species="M_q8_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QMO3" name="quinol monooxygenase (menaquinol 8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3029</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QUIN2tex" name="Quinate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_quin_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_quin_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QUIN2tpp" name="Quinate transport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_quin_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_quin_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QUINDH" name="Quinate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1692</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_quin_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhq_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QULNS" name="quinolinate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0750</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_iasp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_quln_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R15BPK" name="ribose-1,5-bisphosphokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4094</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_r15bp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_prpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R1PK" name="ribose 1-phosphokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_r1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_r15bp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R5PP" name="ribose 5-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0822</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R5PPpp" name="ribose 5-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4055</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_r5p_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_rib_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R5Ptex" name="Ribose 5-phosphate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBFK" name="riboflavin kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0025</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fmn_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBFSa" name="riboflavin synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1662</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4r5au_c"/>
+ <speciesReference species="M_db4p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmlz_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBFSb" name="riboflavin synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0415</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmlz_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4r5au_c"/>
+ <speciesReference species="M_ribflv_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBK" name="ribokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3752</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_r5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBK_L1" name="L-ribulokinase (L-ribulose)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0063</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_rbl_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ru5p_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBP4E" name="L-ribulose-phosphate 4-epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4198 or b3583 or b0061)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.1.3.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_REPHACCOAI" name="ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1394</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rephaccoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2oxpaccoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RFAMPtex" name="Rifampin transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rfamp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rfamp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RFAMPtpp" name="Rifampin transport via TolC system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_rfamp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_rfamp_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RHAT1" name="rhamnosyltransferase I (LPS core biosynthesis)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3629</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdprmn_c"/>
+ <speciesReference species="M_kphphhlipa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_icolipa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RHCCE" name="S-ribosylhomocysteine cleavage enzyme" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2687</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rhcys_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhptd_c"/>
+ <speciesReference species="M_hcys_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RIBabcpp" name="D-ribose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b4231 and b4227 and b4485 and b4230) or (b3749 and b3751 and b3750 and b3748) or (b4087 and b4088 and b4086))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_rib_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RIBtex" name="ribose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rib_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMI" name="L-rhamnose isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3903</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rml_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMK" name="rhamnulokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3904</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_rml_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_rml1p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMNtex" name="L-rhamnose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0241 or b0929 or b1377)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rmn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMNtpp" name="L-rhamnose transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3907</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_rmn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_rmn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMPA" name="Rhamnulose-1-phosphate aldolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3902</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.2.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rml1p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_lald_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR1" name="ribonucleoside-diphosphate reductase (ADP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (((b2234 and b2235) and b2582) or ((b2234 and b2235) and b3781))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 1.17.4.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dadp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR1b" name="ribonucleoside-diphosphate reductase (ADP) (glutaredoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1064 and (b2675 and b2676)) or (b3610 and (b2675 and b2676)) or (b1654 and (b2675 and b2676)) or (b0849 and (b2675 and b2676)))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_grxrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dadp_c"/>
+ <speciesReference species="M_grxox_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR2" name="ribonucleoside-diphosphate reductase (GDP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (((b2234 and b2235) and b3781) or ((b2234 and b2235) and b2582))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 1.17.4.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgdp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR2b" name="ribonucleoside-diphosphate reductase (GDP) (glutaredoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0849 and (b2675 and b2676)) or (b3610 and (b2675 and b2676)) or (b1064 and (b2675 and b2676)) or (b1654 and (b2675 and b2676)))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_grxrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgdp_c"/>
+ <speciesReference species="M_grxox_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR3" name="ribonucleoside-diphosphate reductase (CDP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (((b2234 and b2235) and b3781) or ((b2234 and b2235) and b2582))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 1.17.4.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdp_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcdp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR3b" name="ribonucleoside-diphosphate reductase (CDP) (glutaredoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0849 and (b2675 and b2676)) or (b3610 and (b2675 and b2676)) or (b1654 and (b2675 and b2676)) or (b1064 and (b2675 and b2676)))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdp_c"/>
+ <speciesReference species="M_grxrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcdp_c"/>
+ <speciesReference species="M_grxox_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR4" name="ribonucleoside-diphosphate reductase (UDP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (((b2234 and b2235) and b3781) or ((b2234 and b2235) and b2582))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 1.17.4.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dudp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR4b" name="ribonucleoside-diphosphate reductase (UDP) (glutaredoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0849 and (b2675 and b2676)) or (b1064 and (b2675 and b2676)) or (b3610 and (b2675 and b2676)) or (b1654 and (b2675 and b2676)))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dudp_c"/>
+ <speciesReference species="M_grxox_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR1c2" name="ribonucleoside-triphosphate reductase (ATP) (flavodoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0684 and b3924 and b4238 and b4237) or (b2895 and b3924 and b4238 and b4237) or (b0684 and b4238) or (b2895 and b4238))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_flxr_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_datp_c"/>
+ <speciesReference species="M_flxso_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR2c2" name="ribonucleoside-triphosphate reductase (GTP) (flavodoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0684 and b3924 and b4238 and b4237) or (b2895 and b3924 and b4238 and b4237) or (b0684 and b4238) or (b2895 and b4238))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_flxr_c" stoichiometry="2"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgtp_c"/>
+ <speciesReference species="M_flxso_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR3c2" name="ribonucleoside-triphosphate reductase (CTP) (flavodoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0684 and b3924 and b4238 and b4237) or (b2895 and b3924 and b4238 and b4237) or (b0684 and b4238) or (b2895 and b4238))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c"/>
+ <speciesReference species="M_flxr_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dctp_c"/>
+ <speciesReference species="M_flxso_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR4c2" name="ribonucleoside-triphosphate reductase (UTP) (flavodoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0684 and b3924 and b4238 and b4237) or (b2895 and b3924 and b4238 and b4237) or (b0684 and b4238) or (b2895 and b4238))</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_flxr_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_utp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dutp_c"/>
+ <speciesReference species="M_flxso_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RPE" name="ribulose 5-phosphate 3-epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4301 or b3386)</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 5.1.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RPI" name="ribose-5-phosphate isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2914 or b4090)</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 5.3.1.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RZ5PP" name="alpha-ribazole 5-phosphate phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0638</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5prdmbz_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_rdmbzi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S2FE2SR" name="SUF [2Fe-2S] regeneration" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1683 and b1682 and b1681 and b1679 and b1680)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2fe1s_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_sufbcd_c"/>
+ <speciesReference species="M_sufsesh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c" stoichiometry="5"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_sufbcd_DASH_2fe2s_c"/>
+ <speciesReference species="M_sufse_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S2FE2SS" name="SUF [2Fe-2S] Synthesis" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3807 and b1683 and b1682 and b1681 and b1679 and b1680)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_sufbcd_c"/>
+ <speciesReference species="M_sufsesh_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_h_c" stoichiometry="7"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_sufbcd_DASH_2fe2s_c"/>
+ <speciesReference species="M_sufse_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S2FE2SS2" name="SUF [2Fe-2S] Synthesis II" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3807 and b1683 and b1682 and b1681 and b1679 and b1680)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_sufbcd_DASH_2fe2s_c"/>
+ <speciesReference species="M_sufsesh_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_h_c" stoichiometry="7"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_sufbcd_DASH_2fe2s2_c"/>
+ <speciesReference species="M_sufse_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S2FE2ST" name="SUF [2Fe-2S] Transfer" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1684 and b1683 and b1682 and b1681)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_sufbcd_DASH_2fe2s_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2fe2s_c"/>
+ <speciesReference species="M_sufbcd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S4FE4SR" name="SUF [4Fe-4S] Reduction" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1683 and b1682 and b1681)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_sufbcd_DASH_2fe2s2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c"/>
+ <speciesReference species="M_sufbcd_DASH_4fe4s_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S4FE4ST" name="SUF [4Fe-4S] Transfer" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1684 and b1683 and b1682 and b1681)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_sufbcd_DASH_4fe4s_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4fe4s_c"/>
+ <speciesReference species="M_sufbcd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S7PI" name="sedoheptulose 7-phosphate isomerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0222</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_s7p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmhep7p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SADH" name="Succinylarginine dihydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1745</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.6.1.69</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_sucarg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ <speciesReference species="M_sucorn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SADT2" name="Sulfate adenyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2751 and b2752)</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_so4_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aps_c"/>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SARCOX" name="sarcosine oxidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1059</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 1.5.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_sarcs_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_c"/>
+ <speciesReference species="M_gly_c"/>
+ <speciesReference species="M_h2o2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SBTPD" name="sorbitol-6-phosphate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2705</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.140</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_sbt6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SBTptspp" name="D-sorbitol transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2415 and b2416 and b2702 and b2704 and b2703)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_sbt_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_sbt6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SBTtex" name="D-sorbitol transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sbt_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SCYSDS" name="SUF Cysteine desulfuration" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1679 and b1680)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_sufse_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_sufsesh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SDPDS" name="succinyl-diaminopimelate desuccinylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2472</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 3.5.1.18</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_sl26da_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap_DASH_LL_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SDPTA" name="succinyldiaminopimelate transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3359</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 2.6.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_sl26da_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_sl2a6o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELCYSS" name="selenocysteine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3591</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 2.9.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_selnp_c"/>
+ <speciesReference species="M_sertrna_LSQBKT_sec_RSQBKT__c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_sectrna_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELGTHR" name="selenate glutathione reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="4"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_slnt_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgslnt_c"/>
+ <speciesReference species="M_gthox_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELGTHR2" name="selenate glutathione reductase II" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgslnt_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gslnt_c"/>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELGTHR3" name="selenate glutathione reductase III" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gslnt_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_seln_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELNPS" name="Selenophosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1764</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 2.7.9.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_seln_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_selnp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELR" name="selenate reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1587 and b1588 and b1589 and b1590)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_sel_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_slnt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELtex" name="selenate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sel_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sel_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELtpp" name="selenate transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2422 and b2425 and b2424 and b2423)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_sel_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_sel_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SEPHCHCS" name="2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2264</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ichor_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2sephchc_c"/>
+ <speciesReference species="M_co2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERASr" name="(L-seryl)adenylate synthase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0586</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_seramp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERAT" name="serine O-acetyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3607</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 2.3.1.30</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_c"/>
+ <speciesReference species="M_coa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERD_D" name="D-serine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2366</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERD_L" name="L-serine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4471 or b1814 or b2797 or b3708)</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 4.3.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERTRS" name="Seryl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0893</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ <speciesReference species="M_trnaser_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_sertrna_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERTRS2" name="Seryl-tRNA synthetase (selenocystein)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0893</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.11</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ <speciesReference species="M_trnasecys_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_sertrna_LSQBKT_sec_RSQBKT__c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERt2rpp" name="L-serine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2796 or b3116)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ser_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERt4pp" name="L-serine via sodium symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3089</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p"/>
+ <speciesReference species="M_ser_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERtex" name="L-serine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SFGTHi" name="S-Formylglutathione hydralase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2154 or b0355)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.1.2.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_Sfglutth_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_gthrd_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SGDS" name="Succinylglutamate desuccinylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1744</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_sucglu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SGSAD" name="Succinylglutamic semialdehyde dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1746</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_sucgsa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_sucglu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHCHCS3" name="2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2263</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2sephchc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2shchc_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHCHD2" name="sirohydrochlorin dehydrogenase (NAD)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3368</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dscl_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_scl_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHCHF" name="sirohydrochlorin ferrochelatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3368</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_c"/>
+ <speciesReference species="M_scl_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_sheme_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHK3Dr" name="shikimate dehydrogenase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1692 or b3281)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 1.1.1.25</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhsk_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_skm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHKK" name="shikimate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3390 or b0388)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 2.7.1.71</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_skm_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_skm5p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHSL1" name="O-succinylhomoserine lyase (L-cysteine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3939</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ <p>EC Number: 4.2.99.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys_DASH_L_c"/>
+ <speciesReference species="M_suchms_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cyst_DASH_L_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SKMt2pp" name="shikimate transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1981</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_skm_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_skm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SKMtex" name="shikimate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_skm_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_skm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SLNTtex" name="selenite transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_slnt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_slnt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SLNTtpp" name="selenite transport via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2422 and b2425 and b2424 and b2423)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_slnt_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_slnt_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO2tex" name="SO2 transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO2tpp" name="SO2 transport via diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO3tex" name="sulfite transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so3_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO4t2pp" name="sulfate transport in via proton symport (periplasm to cytoplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1206</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_so4_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_so4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO4tex" name="sulfate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SOTA" name="Succinylornithine transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1748</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_sucorn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_sucgsa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDAT1" name="Spermidine acetyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1584</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.3.1.57</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_spmd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_N1aspmd_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDAT2" name="Spermidine acetyltransferase (N8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1584</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.3.1.57</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_spmd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_n8aspmd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDabcpp" name="spermidine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b1126 and b1125 and b1124 and b1123) or (b1440 and b1441 and b1442 and b1443))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_spmd_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_spmd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDt3pp" name="spermidine transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1599 and b1600)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_spmd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDtex" name="spermidine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_spmd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMS" name="spermidine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0121</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 2.5.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ametam_c"/>
+ <speciesReference species="M_ptrc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mta_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_spmd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPODM" name="superoxide dismutase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3908 or b1656)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.15.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_o2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPODMpp" name="superoxide dismutase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1646</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.15.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_o2s_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_p"/>
+ <speciesReference species="M_o2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SSALx" name="succinate-semialdehyde dehydrogenase (NAD)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1525</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.2.1.24</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_sucsal_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SSALy" name="succinate-semialdehyde dehydrogenase (NADP)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2661 or b1525)</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ <p>EC Number: 1.2.1.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_sucsal_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCASPtpp" name="succinate:aspartate antiporter (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4138 or b4123 or b0621)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c"/>
+ <speciesReference species="M_asp_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp_DASH_L_c"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCBZL" name="o-succinylbenzoate-CoA ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2260</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 6.2.1.26</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_sucbz_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_sbzcoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCBZS" name="O-succinylbenzoate-CoA synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2261</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2shchc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_sucbz_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCt2_2pp" name="succinate transport via proton symport (2 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3528</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCt2_3pp" name="Succintate transport via proton symport (3 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4123 or b4138)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCt3pp" name="succinate transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCtex" name="succinate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCDi" name="succinate dehydrogenase (irreversible)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0721 and b0722 and b0723 and b0724)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.3.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_q8h2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCFUMtpp" name="succinate:fumarate antiporter (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4123 or b0621 or b4138)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c"/>
+ <speciesReference species="M_fum_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCMALtpp" name="succinate:malate antiporter (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4138 or b4123 or b0621)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c"/>
+ <speciesReference species="M_mal_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal_DASH_L_c"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCOAS" name="succinyl-CoA synthetase (ADP-forming)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0728 and b0729)</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ <p>EC Number: 6.2.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_succoa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCRtex" name="sucrose transport transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucr_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucr_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCTARTtpp" name="succinate:D-tartrate antiporter (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4123</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c"/>
+ <speciesReference species="M_tartr_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr_DASH_D_c"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCptspp" name="sucrose transport via PEP:Pyr (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2417 and b2429 and b2415 and b2416)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_sucr_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_suc6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SULFACabcpp" name="sulfoacetate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0936 and b0933 and b0934)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_sulfac_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_sulfac_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SULFACtex" name="sulfoaceate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sulfac_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sulfac_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SULRi" name="sulfite reductase (NADPH2)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2763 and b2764)</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ <p>EC Number: 1.8.2.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="5"/>
+ <speciesReference species="M_nadph_c" stoichiometry="3"/>
+ <speciesReference species="M_so3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ <speciesReference species="M_h2s_c"/>
+ <speciesReference species="M_nadp_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SULabcpp" name="sulfate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2422 and b2425 and b2424 and b2423) or (b0763 and b0764 and b0765) or (b2422 and b2424 and b2423 and b3917))</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_so4_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_so4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_T2DECAI" name="trans-2-decenoyl-ACP isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0954</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdec2eACP_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdec3eACP_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAGURr" name="tagaturonate reductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1521</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.58</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_altrn_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_tagur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TALA" name="transaldolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2464 or b0008)</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 2.2.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_s7p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_e4p_c"/>
+ <speciesReference species="M_f6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTD" name="L(+)-tartrate dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3061 and b3062)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.2.1.32</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_oaa_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTRDtex" name="D-tartrate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTRt7pp" name="Tartrate/succinate antiporter (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3063</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c"/>
+ <speciesReference species="M_tartr_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr_DASH_L_c"/>
+ <speciesReference species="M_succ_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTRtex" name="Tartrate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTt2_3pp" name="D-tartrate transport via proton symport (3 H) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4123</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ <speciesReference species="M_tartr_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_tartr_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAUDO" name="Taurine dioxygenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0368</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.14.11.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_taur_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aacald_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_so3_c"/>
+ <speciesReference species="M_succ_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAURabcpp" name="taurine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0365 and b0366 and b0367)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_taur_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_taur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAURtex" name="taurine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_taur_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_taur_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TCYNTtex" name="Thiocyanate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcynt_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcynt_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDP" name="thiamin pyrophosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1134</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 3.6.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_thmpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_thmmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPADGAT" name="dTDP-4-amino-4,6-dideoxy-D-glucose acetyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3790</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c"/>
+ <speciesReference species="M_dtdp4addg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_dtdp4aaddg_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPAGTA" name="dTDP-4-amino-4,6-dideoxy-D-glucose transaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3791</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.6.1.33</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4d6dg_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_dtdp4addg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPDRE" name="dTDP-4-dehydrorhamnose 3,5-epimerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2038</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 5.1.3.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4d6dg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp4d6dm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPDRR" name="dTDP-4-dehydrorhamnose reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2040</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.133</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4d6dm_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdprmn_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPGDH" name="dTDPglucose 4,6-dehydratase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3788 or b2041)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 4.2.1.46</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdpglu_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp4d6dg_c"/>
+ <speciesReference species="M_h2o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDSK" name="Tetraacyldisaccharide 4'kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0915</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: 2.7.1.130</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_lipidAds_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_lipidA_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDSR1" name="thiol:disulfide reductase (DsbC)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2893 and b4136)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbdrd_c"/>
+ <speciesReference species="M_dsbcox_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbdox_c"/>
+ <speciesReference species="M_dsbcrd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDSR2" name="thiol:disulfide reductase (DsbG)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4136 and b0604)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbdrd_c"/>
+ <speciesReference species="M_dsbgox_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbdox_c"/>
+ <speciesReference species="M_dsbgrd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TGBPA" name="Tagatose-bisphosphate aldolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3132 and b3137) or (b2095 and b2096))</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 4.1.2.40</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tagdp_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c"/>
+ <speciesReference species="M_g3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THD2pp" name="NAD(P) transhydrogenase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1602 and b1603)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.6.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THDPS" name="tetrahydrodipicolinate succinylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0166</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 2.3.1.117</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_succoa_c"/>
+ <speciesReference species="M_thdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c"/>
+ <speciesReference species="M_sl2a6o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THFAT" name="Tetrahydrofolate aminomethyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2551</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ <p>EC Number: 2.1.2.10</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_methf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5fthf_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THIORDXi" name="hydrogen peroxide reductase (thioredoxin)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2480 and b3781) or (b2480 and b2582) or b1710)</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMDt2pp" name="thymidine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2393 or b2964)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_thymd_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thymd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMDt2rpp" name="thymidine transport in via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2406</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_thymd_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thymd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMDtex" name="thymidine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMabcpp" name="thiamine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0068 and b0067 and b0066)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_thm_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_thm_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMtex" name="Thiamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thm_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRA2i" name="L-allo-Threonine Aldolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2551 or b0870)</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 4.1.2.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_athr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_gly_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRAi" name="Threonine aldolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2551 or b0870)</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 4.1.2.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c"/>
+ <speciesReference species="M_gly_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRD" name="L-threonine dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3616</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ <p>EC Number: 1.1.1.103</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2aobut_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRD_L" name="L-threonine deaminase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3117 or b3772)</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 4.3.1.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2obut_c"/>
+ <speciesReference species="M_nh4_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRPtex" name="phospho-L-threonine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thrp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRS" name="threonine synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0004</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ <p>EC Number: 4.2.3.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_phom_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRTRS" name="Threonyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1719</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ <speciesReference species="M_trnathr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_thrtrna_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRabcpp" name="L-threonine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3454 and b3455 and b3457 and b3460 and b3456)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_thr_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRt2pp" name="L-threonine efflux transport via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0813 or b3823)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thr_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRt2rpp" name="L-threonine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3116</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_thr_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRt4pp" name="L-threonine via sodium symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3089</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p"/>
+ <speciesReference species="M_thr_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c"/>
+ <speciesReference species="M_thr_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRtex" name="L-threonine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THYMt3pp" name="thymine transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thym_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THYMtex" name="thymine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thym_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THZPSN3" name="thiazole phosphate synthesis" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2530 and b3992 and b3990 and b0423 and b4407)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dhgly_c"/>
+ <speciesReference species="M_dxyl5p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_iscssh_c"/>
+ <speciesReference species="M_nadph_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4mpetz_c"/>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_iscs_c"/>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TKT1" name="transketolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2935 or b2465)</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 2.2.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_c"/>
+ <speciesReference species="M_xu5p_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_s7p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TKT2" name="transketolase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2935 or b2465)</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ <p>EC Number: 2.2.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_e4p_c"/>
+ <speciesReference species="M_xu5p_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c"/>
+ <speciesReference species="M_g3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOR1" name="Trimethylamine N-oxide reductase (menaquinol 8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0894 and b0895 and b0896) or (b1587 and b1588 and b1589 and b1590))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_tmao_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_tma_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOR1pp" name="Trimethylamine N-oxide reductase (menaquinol 8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0996 and b0997) or (b1872 and b1873))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_tmao_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c"/>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_tma_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOR2" name="Trimethylamine N-oxide reductase (demethylmenaquinol 8)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0894 and b0895 and b0896)</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_tmao_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tma_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOR2pp" name="Trimethylamine N-oxide reductase (demethylmenaquinol 8) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0996 and b0997) or (b1872 and b1873))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c"/>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_tmao_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c"/>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_tma_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOtex" name="Trimethylamine N-oxide transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmao_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tmao_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAtex" name="Trimethylamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tma_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tma_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMDK1" name="thymidine kinase (ATP:thymidine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1238</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.1.21</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_thymd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_dtmp_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMDPP" name="thymidine phosphorylase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4382</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.4</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_thymd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c"/>
+ <speciesReference species="M_thym_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMDS" name="thymidylate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2827</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.1.1.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_c"/>
+ <speciesReference species="M_mlthf_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhf_c"/>
+ <speciesReference species="M_dtmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMK" name="thiamine kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1106</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.1.89</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_thm_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thmmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMPK" name="thiamine-phosphate kinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0417</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.7.4.16</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_thmmp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_thmpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMPPP" name="thiamine-phosphate diphosphorylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3993</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.5.1.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mahmp_c"/>
+ <speciesReference species="M_4mpetz_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_thmmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TPI" name="triose-phosphate isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3919</p>
+ <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>EC Number: 5.3.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TPRDCOAS" name="triphosphoribosyl-dephospho-CoA synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0613</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_dpcoa_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tpr3dpcoa_c"/>
+ <speciesReference species="M_ade_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRDR" name="thioredoxin reductase (NADPH)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b3781 and b0888) or (b0888 and b2582))</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>EC Number: 1.8.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_trdox_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_trdrd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRE6PH" name="trehalose-6-phosphate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4239</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.93</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tre6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRE6PP" name="trehalose-phosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1897</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.1.3.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tre6p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_tre_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRE6PS" name="alpha,alpha-trehalose-phosphate synthase (UDP-forming)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1896</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.4.1.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_tre6p_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREH" name="alpha,alpha-trehalase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3519</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.28</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tre_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREHpp" name="alpha,alpha-trehalase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1197</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.1.28</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_tre_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc_DASH_D_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREptspp" name="trehalose transport via PEP:Pyr PTS (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2417 and b2415 and b2416 and b4240)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_tre_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_tre6p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREtex" name="trehalose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tre_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPAS2" name="Tryptophanase (L-tryptophan)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3708</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.1.99.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_trp_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_c"/>
+ <speciesReference species="M_nh4_c"/>
+ <speciesReference species="M_pyr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPS1" name="tryptophan synthase (indoleglycerol phosphate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1260 and b1261)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ig3p_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_trp_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPS2" name="tryptophan synthase (indole)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1260 and b1261)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_c"/>
+ <speciesReference species="M_ser_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_trp_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPS3" name="tryptophan synthase (indoleglycerol phosphate)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1260 and b1261)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 4.2.1.20</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ig3p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c"/>
+ <speciesReference species="M_indole_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPTRS" name="Tryptophanyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3384</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_trnatrp_c"/>
+ <speciesReference species="M_trp_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_trptrna_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPt2rpp" name="L-tryptophan reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3161 or b3709 or b1473 or b0112)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_trp_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_trp_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPtex" name="L-tryptophan transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trp_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRSARr" name="tartronate semialdehyde reductase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0509 or b3125)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.60</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2h3oppan_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_DASH_R_c"/>
+ <speciesReference species="M_nad_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TSULabcpp" name="thiosulfate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b2422 and b2425 and b2424 and b2423) or (b2422 and b2424 and b2423 and b3917))</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tsul_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_tsul_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TSULtex" name="thiosulfate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTDCAtexi" name="Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2344</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTDCEAtexi" name="Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2344</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTRCYCtex" name="Tetracycline transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttrcyc_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttrcyc_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTRCYCtpp" name="Tetracycline transport via TolC system" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035))</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ttrcyc_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ttrcyc_e"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TUNGSabcpp" name="tungstate transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0763 and b0764 and b0765)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_tungs_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_tungs_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TUNGStex" name="tungstate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tungs_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tungs_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYMtex" name="tyramine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tym_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tym_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRL" name="tyrosine lyase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3991</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_tyr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4crsol_c"/>
+ <speciesReference species="M_dad_DASH_5_c"/>
+ <speciesReference species="M_dhgly_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_met_DASH_L_c"/>
+ <speciesReference species="M_nadp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYROXDApp" name="Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1386</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 1.4.3.6</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_o2_p"/>
+ <speciesReference species="M_tym_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpacd_p"/>
+ <speciesReference species="M_h2o2_p"/>
+ <speciesReference species="M_nh4_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRPpp" name="phospho-L-tyrosine phosphatase (periplasmic)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4055</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_tyrp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_tyr_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRPtex" name="phopho-L-tyrosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2215 or b0241 or b0929 or b1377)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyrp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRTA" name="tyrosine transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4054 or b0928)</p>
+ <p>SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism</p>
+ <p>EC Number: 2.6.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_tyr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34hpp_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRTRS" name="tyrosyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1637</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.1</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_trnatyr_c"/>
+ <speciesReference species="M_tyr_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_tyrtrna_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRt2rpp" name="L-tyrosine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1473 or b1907 or b0112 or b0576)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_tyr_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_tyr_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRtex" name="L-tyrosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyr_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ThDPAT" name="ThDP adenylyl transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thmpp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_athtp_c"/>
+ <speciesReference species="M_pi_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_U23GAAT" name="UDP-3-O-(3-hydroxymyristoyl)glucosamine acyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0179</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hmrsACP_c"/>
+ <speciesReference species="M_u3hga_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_u23ga_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAAGDS" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0085</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.3.2.13</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap_DASH_M_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_uamag_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ugmd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACGALPpp" name="UDP-N-acetyl-D-galactosamine pyrophosphohydrolase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0480</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.6.1.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_udpacgal_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal1p_p"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_ump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACGAMPpp" name="UDP-N-acetyl-D-glucosamine pyrophosphohydrolase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0480</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.6.1.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_uacgam_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_p"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_ump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACGAMtex" name="UDP-N-acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uacgam_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACMAMO" name="UDP-N-acetyl-D-mannosamine oxidoreductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3787</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ <speciesReference species="M_uacmam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ <speciesReference species="M_uacmamu_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAG2E" name="UDP-N-acetylglucosamine 2-epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3786</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 5.1.3.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uacmam_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGAAT" name="UDP-N-acetylglucosamine acyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1094 and b0181)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: 2.3.1.129</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hmrsACP_c"/>
+ <speciesReference species="M_uacgam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c"/>
+ <speciesReference species="M_u3aga_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGCVT" name="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3189</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.5.1.7</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c"/>
+ <speciesReference species="M_uacgam_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_uaccg_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGDP" name="UDP-N-acetylglucosamine diphosphorylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3730</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 2.7.7.23</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_utp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_uacgam_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGPT3" name="UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0090</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c"/>
+ <speciesReference species="M_uagmda_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_uaagmda_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAMAGS" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0088</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.3.2.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_glu_DASH_D_c"/>
+ <speciesReference species="M_uama_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_uamag_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAMAS" name="UDP-N-acetylmuramoyl-L-alanine synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0091</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.3.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_uamr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_uama_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAPGR" name="UDP-N-acetylenolpyruvoylglucosamine reductase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3972</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.158</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadph_c"/>
+ <speciesReference species="M_uaccg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c"/>
+ <speciesReference species="M_uamr_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPDP" name="undecaprenyl-diphosphatase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0841 or b1278 or b3057)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.6.1.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_udcpdp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_udcpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPDPS" name="Undecaprenyl diphosphate synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0174</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="8"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="8"/>
+ <speciesReference species="M_udcpdp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPDPpp" name="undecaprenyl-diphosphatase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1278 or b3057 or b0841)</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 3.6.1.27</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_udcpdp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_pi_p"/>
+ <speciesReference species="M_udcpp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPPtppi" name="undecaprenyl phosphate transport (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPACGALtex" name="UDP-N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpacgal_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpacgal_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPG4E" name="UDPglucose 4-epimerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0759</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.1.3.2</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGALM" name="UDPgalactopyranose mutase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2036</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 5.4.99.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgalfur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGALPpp" name="UDPgalactose pyrophosphohydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0480</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.6.1.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_udpgal_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal1p_p"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_ump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGALtex" name="UDPgalactose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGD" name="UDPglucose 6-dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2028</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 1.1.1.22</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ <speciesReference species="M_udpglcur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGDC" name="UDP-glucuronate C-4'' decarboxylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2255</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_udpglcur_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_udpLa4o_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGLCURtex" name="UDP-D-glucuronate transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpglcur_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpglcur_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGPpp" name="UDPglucose pyrophosphohydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0480</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.6.1.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_udpg_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_p"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_ump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGtex" name="UDPglucose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpg_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPKAAT" name="UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2253</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ <speciesReference species="M_udpLa4o_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_udpLa4n_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGLCURPpp" name="UDP-D-glucuronate pyrophosphohydrolase (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0480</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.6.1.45</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p"/>
+ <speciesReference species="M_udpglcur_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur1p_p"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_ump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGLT" name="UDPglucose--hexose-1-phosphate uridylyltransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0758</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.7.12</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_c"/>
+ <speciesReference species="M_udpg_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c"/>
+ <speciesReference species="M_udpgal_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGLYCH" name="Ureidoglycolate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0505</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ <p>EC Number: 3.5.3.19</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_urdglyc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_glx_c"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGMDDS" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0086</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ <p>EC Number: 6.3.2.15</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ugmd_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ugmda_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UHGADA" name="UDP-3-O-acetylglucosamine deacetylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0096</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_u3aga_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c"/>
+ <speciesReference species="M_u3hga_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ULA4NFT" name="UDP-L-Ara4N formyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2255</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c"/>
+ <speciesReference species="M_udpLa4n_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_thf_c"/>
+ <speciesReference species="M_udpLa4fn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ULA4Ntppi" name="transport (cytoplasm to periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b4544 and b2258)</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uLa4n_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uLa4n_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UM3PL" name="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4233</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_uamr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_ugmd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UM4PCP" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1192</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_um4p_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala_DASH_D_c"/>
+ <speciesReference species="M_ugmd_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UM4PL" name="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4233</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_c"/>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_uamr_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_um4p_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UMPK" name="UMP kinase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0910 or b0171)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.4.14</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UMPtex" name="UMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPLA4FNF" name="undecaprenyl phosphate-L-Ara4FN formylase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2256</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_uLa4fn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c"/>
+ <speciesReference species="M_uLa4n_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPLA4FNT" name="undecaprenyl phosphate-L-Ara4FN transferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2254</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c"/>
+ <speciesReference species="M_udpLa4fn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uLa4fn_c"/>
+ <speciesReference species="M_udp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPP3MT" name="uroporphyrinogen methyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3803 or b3368)</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 2.1.1.107</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_uppg3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_dscl_c"/>
+ <speciesReference species="M_h_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPP3S" name="uroporphyrinogen-III synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3804</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.2.1.75</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hmbil_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_uppg3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPPDC1" name="uroporphyrinogen decarboxylase (uroporphyrinogen III)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3997</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: 4.1.1.37</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_uppg3_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="4"/>
+ <speciesReference species="M_cpppg3_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPPRT" name="uracil phosphoribosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2498</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URACPAH" name="peroxyureidoacrylate hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1011</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_uracp_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbm_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_poaac_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URAt2pp" name="uracil transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2497</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ura_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URAt2rpp" name="uracil transport in via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b1006</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_ura_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URAtex" name="uracil transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URDGLYCD" name="ureidoglycolate dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0517</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 1.1.1.154</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_urdglyc_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_oxur_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UREAtex" name="Urea transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UREAtpp" name="Urea transport via facilitate diffusion (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3927</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIC" name="uricase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ <p>EC Number: 1.7.3.3</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_o2_c"/>
+ <speciesReference species="M_urate_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_c"/>
+ <speciesReference species="M_co2_c"/>
+ <speciesReference species="M_h2o2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIH" name="Uridine hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2162 or b0651 or b0030)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 3.2.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_uri_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ <speciesReference species="M_ura_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIK2" name="uridine kinase (GTP:Uridine)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2066</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.7.1.48</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c"/>
+ <speciesReference species="M_uri_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIt2pp" name="uridine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2393 or b2964)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_uri_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_uri_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIt2rpp" name="uridine transport in via proton symport, reversible (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2406</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_uri_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_uri_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URItex" name="uridine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0411</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_USHD" name="UDP-sugar hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0524</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_u23ga_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_lipidX_c"/>
+ <speciesReference species="M_ump_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALTA" name="valine transaminase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3770</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 2.6.1.42</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c"/>
+ <speciesReference species="M_val_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mob_c"/>
+ <speciesReference species="M_glu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALTRS" name="Valyl-tRNA synthetase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4258</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ <p>EC Number: 6.1.1.9</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_trnaval_c"/>
+ <speciesReference species="M_val_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_valtrna_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALabcpp" name="L-valine transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3454 and b3455 and b3457 and b3460 and b3456)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_val_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_val_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALt2rpp" name="L-valine reversible transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0401 or (b2683 and b2682))</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_val_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_val_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALtex" name="L-valine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VPAMTr" name="Valine-pyruvate aminotransferase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3572</p>
+ <p>SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism</p>
+ <p>EC Number: 2.6.1.66</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3mob_c"/>
+ <speciesReference species="M_ala_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c"/>
+ <speciesReference species="M_val_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_WCOS" name="tungsten pterin cofactor synthase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0827</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_mptamp_c"/>
+ <speciesReference species="M_tungs_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c"/>
+ <speciesReference species="M_cu2_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_wco_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_X5PL3E" name="L-xylulose 5-phosphate 3-epimerase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4197</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xu5p_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XAND" name="xanthine dehydrogenase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b2866 and b2867 and b2868)</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 1.1.1.204</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_nad_c"/>
+ <speciesReference species="M_xan_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_nadh_c"/>
+ <speciesReference species="M_urate_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XANt2pp" name="xanthine transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3654 or b2882)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_xan_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_xan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XANtex" name="xanthine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XANtpp" name="xanthine reversible transport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XMPtex" name="XMP transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xmp_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XPPT" name="xanthine phosphoribosyltransferase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0238</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 2.4.2.22</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c"/>
+ <speciesReference species="M_xan_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c"/>
+ <speciesReference species="M_xmp_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XTSNH" name="Xanthosine hydrolase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b0030</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ <p>EC Number: 3.2.2.8</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_xtsn_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib_DASH_D_c"/>
+ <speciesReference species="M_xan_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XTSNt2rpp" name="Xanthosine transport via proton symport (periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2406</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_xtsn_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_xtsn_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XTSNtex" name="xanthosine transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLI1" name="xylose isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3565</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLI2" name="xylose isomerase">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3565</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 5.3.1.5</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLK" name="xylulokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0063 or b3564)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.17</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_xylu_DASH_D_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_xu5p_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLK2" name="L-xylulokinase" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0063 or b3580)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ <p>EC Number: 2.7.1.53</p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_xylu_DASH_L_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_xu5p_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLUt2pp" name="L-xylulose transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3577 and b3578 and b3579)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_xylu_DASH_L_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_xylu_DASH_L_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLUtex" name="L-xylulose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu_DASH_L_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu_DASH_L_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLabcpp" name="D-xylose transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3566 and b3567 and b3568)</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_xyl_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_xyl_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLt2pp" name="D-xylose transport in via proton symport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b4031</p>
+ <p>SUBSYSTEM: Transport, Inner Membrane</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p"/>
+ <speciesReference species="M_xyl_DASH_D_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_xyl_DASH_D_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLtex" name="D-xylose transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl_DASH_D_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xyl_DASH_D_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZN2abcpp" name="Zinc (Zn+2) ABC transporter, efflux (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3469</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_zn2_c"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_zn2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZN2t3pp" name="zinc (Zn+2) transport out via proton antiport (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b3915 or b0752)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_c"/>
+ <speciesReference species="M_h_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_zn2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZN2tpp" name="zinc transport in via permease (no H+)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3040</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZNabcpp" name="zinc (Zn+2) transport via ABC system (periplasm)" reversible="false">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b1857 and b1859 and b1858)</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c"/>
+ <speciesReference species="M_h2o_c"/>
+ <speciesReference species="M_zn2_p"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c"/>
+ <speciesReference species="M_h_c"/>
+ <speciesReference species="M_pi_c"/>
+ <speciesReference species="M_zn2_c"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Zn2tex" name="zinc (Zn+2) transport via diffusion (extracellular to periplasm)">
+ <notes>
+ <body xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215)</p>
+ <p>SUBSYSTEM: Transport, Outer Membrane Porin</p>
+ <p>EC Number: </p>
+ </body>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_e"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_p"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ </listOfReactions>
+ </model>
+</sbml>
diff --git a/cobra/test/data/salmonella.genes b/cobra/test/data/salmonella.genes
new file mode 100644
index 0000000..f989bb6
--- /dev/null
+++ b/cobra/test/data/salmonella.genes
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+s.
\ No newline at end of file
diff --git a/cobra/test/data/salmonella.media b/cobra/test/data/salmonella.media
new file mode 100644
index 0000000..59b733f
--- /dev/null
+++ b/cobra/test/data/salmonella.media
@@ -0,0 +1,567 @@
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+sg25
+F-1000
+sg22
+F-1000
+sS'EX_nh4_e'
+p93
+F-1000
+sg51
+F-1000
+sg31
+F-0.01
+sg35
+F-1000
+sg37
+F-1000
+sg41
+F-100
+sg44
+F-5
+sg47
+F-18.5
+sg52
+F-1000
+sg23
+F-1000
+ssS'LPM'
+p94
+(dp95
+S'EX_ca2_e'
+p96
+F-0.0050000000000000001
+sS'EX_cit_e'
+p97
+F-0.00050000000000000001
+sS'EX_h_e'
+p98
+I-100
+sS'EX_mobd_e'
+p99
+F-0.0050000000000000001
+sS'EX_o2_e'
+p100
+F-18.5
+sS'EX_cobalt2_e'
+p101
+F-0.0050000000000000001
+sS'EX_mg2_e'
+p102
+F-0.0080000000000000002
+sS'EX_thm_e'
+p103
+F-2.9649835443413292e-08
+sS'EX_so4_e'
+p104
+F-1
+sS'EX_glyc_e'
+p105
+F-41.046802041481158
+sS'EX_co2_e'
+p106
+F-18.5
+sS'EX_pi_e'
+p107
+F-0.33700000000000002
+sS'EX_k_e'
+p108
+F-6
+sS'EX_cu2_e'
+p109
+F-0.0050000000000000001
+sS'EX_cl_e'
+p110
+F-5.016
+sS'EX_zn2_e'
+p111
+F-0.0050000000000000001
+sS'EX_h2o_e'
+p112
+I-1000
+sS'EX_nh4_e'
+p113
+F-15
+sS'EX_mn2_e'
+p114
+F-0.0050000000000000001
+sS'EX_fe3_e'
+p115
+F-0.0050000000000000001
+ssS'MgM'
+p116
+(dp117
+S'EX_ser__L_e'
+p118
+F-0.3115
+sS'EX_cobalt2_e'
+p119
+F-0.01
+sS'EX_pro__L_e'
+p120
+F-0.61850000000000005
+sS'EX_glu__L_e'
+p121
+F-0.80200000000000005
+sS'EX_glyc_e'
+p122
+F-38
+sS'EX_h_e'
+p123
+I-100
+sS'EX_mobd_e'
+p124
+F-0.01
+sS'EX_val__L_e'
+p125
+F-0.29999999999999999
+sS'EX_so4_e'
+p126
+F-8
+sS'EX_co2_e'
+p127
+F-18.5
+sS'EX_k_e'
+p128
+F-7.0026855387574392
+sS'EX_fe3_e'
+p129
+F-0.01
+sS'EX_na1_e'
+p130
+F-0.55198392330511803
+sS'EX_cl_e'
+p131
+F-5.6458532974921516
+sS'EX_leu__L_e'
+p132
+F-0.4385
+sS'EX_arg__L_e'
+p133
+F-0.1135
+sS'EX_nh4_e'
+p134
+F-0.35449999999999998
+sS'EX_lys__L_e'
+p135
+F-0.32450000000000001
+sS'EX_ala__L_e'
+p136
+F-0.22
+sS'EX_thr__L_e'
+p137
+F-0.20849999999999999
+sS'EX_pi_e'
+p138
+F-1
+sS'EX_mn2_e'
+p139
+F-0.01
+sS'EX_phe__L_e'
+p140
+F-0.045499999999999999
+sS'EX_h2o_e'
+p141
+I-1000
+sS'EX_his__L_e'
+p142
+F-0.097000000000000003
+sS'EX_o2_e'
+p143
+F-18.5
+sS'EX_tyr__L_e'
+p144
+F-0.0035000000000000001
+sS'EX_asp__L_e'
+p145
+F-0.32850000000000001
+sS'EX_gly_e'
+p146
+F-0.1555
+sS'EX_cys__L_e'
+p147
+F-0.014500000000000001
+sS'EX_cu2_e'
+p148
+F-0.01
+sS'EX_ca2_e'
+p149
+F-0.0020709616248315785
+sS'EX_mg2_e'
+p150
+F-0.0080983336761983136
+sS'EX_zn2_e'
+p151
+F-0.01
+sS'EX_met__L_e'
+p152
+F-0.1125
+sS'EX_ile__L_e'
+p153
+F-0.19600000000000001
+ss.
\ No newline at end of file
diff --git a/cobra/test/data/salmonella.pickle b/cobra/test/data/salmonella.pickle
new file mode 100644
index 0000000..5b1ef60
Binary files /dev/null and b/cobra/test/data/salmonella.pickle differ
diff --git a/cobra/test/data/salmonella.xml b/cobra/test/data/salmonella.xml
new file mode 100644
index 0000000..022cf22
--- /dev/null
+++ b/cobra/test/data/salmonella.xml
@@ -0,0 +1,91661 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
+ <model id="Salmonella_consensus_build_1">
+ <listOfUnitDefinitions>
+ <unitDefinition id="mmol_per_gDW_per_hr">
+ <listOfUnits>
+ <unit kind="mole" scale="-3"/>
+ <unit kind="gram" exponent="-1"/>
+ <unit kind="second" exponent="-1" multiplier="0.000277777777777778"/>
+ </listOfUnits>
+ </unitDefinition>
+ </listOfUnitDefinitions>
+ <listOfCompartments>
+ <compartment id="p" name="Periplasm" size="1"/>
+ <compartment id="c" name="Cytoplasm" size="1"/>
+ <compartment id="e" name="Extracellular" size="1"/>
+ </listOfCompartments>
+ <listOfSpecies>
+ <species id="M_dcaACP_c" name="Decanoyl-ACP-n-C100ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39N2O8PRS</p>
+ <p>PUBCHEM: 8050</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05755</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2aobut_c" name="L-2-Amino-3-oxobutanoate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7NO3</p>
+ <p>PUBCHEM: 6318</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16944</p>
+ <p>KEGG: C03508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pglyc_c" name="2-Phosphoglycolate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O6P</p>
+ <p>PUBCHEM: 4234</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17150</p>
+ <p>KEGG: C00988</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eig3p_c" name="D-erythro-1-Imidazol-4-yl-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N2O6P</p>
+ <p>PUBCHEM: 7249</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17805</p>
+ <p>KEGG: C04666</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ahbut_c" name="S-2-Aceto-2-hydroxybutanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O4</p>
+ <p>PUBCHEM: 8279</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 27681 49256</p>
+ <p>KEGG: C06006</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_p" name="ferroxamine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>PUBCHEM: 9799</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C07597</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_c" name="Pyruvate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>PUBCHEM: 3324</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32816</p>
+ <p>KEGG: C00022</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_e" name="Pyruvate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>PUBCHEM: 3324</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32816</p>
+ <p>KEGG: C00022</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_p" name="Pyruvate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>PUBCHEM: 3324</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32816</p>
+ <p>KEGG: C00022</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdecoa_c" name="Tetradecenoyl-CoA-n-C141CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O17P3S</p>
+ <p>PUBCHEM: 8959</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg161_c" name="acyl-phosphatidylglycerol-n-C161" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C54H98O11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_p" name="L-Methionine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>PUBCHEM: 3373</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16643</p>
+ <p>KEGG: C00073</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_e" name="Xanthosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>PUBCHEM: 4895</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18107</p>
+ <p>KEGG: C01762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_e" name="L-Alanine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3343</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16977</p>
+ <p>KEGG: C00041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_c" name="L-Alanine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3343</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16977</p>
+ <p>KEGG: C00041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_c" name="octanoate-n-C80" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>PUBCHEM: 8658</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28837</p>
+ <p>KEGG: C06423</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_e" name="L-Methionine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>PUBCHEM: 3373</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16643</p>
+ <p>KEGG: C00073</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hmrsACP_c" name="R-3-Hydroxytetradecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H47N2O9PRS</p>
+ <p>PUBCHEM: 7269</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04688</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_c" name="L-Methionine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>PUBCHEM: 3373</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16643</p>
+ <p>KEGG: C00073</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_p" name="octanoate-n-C80" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>PUBCHEM: 8658</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28837</p>
+ <p>KEGG: C06423</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_p" name="L-Alanine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3343</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16977</p>
+ <p>KEGG: C00041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_p" name="beta-Alanine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3399</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16958</p>
+ <p>KEGG: C00099</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_e" name="beta-Alanine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3399</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16958</p>
+ <p>KEGG: C00099</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_e" name="R-Pantothenate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>PUBCHEM: 4121</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ <p>KEGG: C00864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_c" name="beta-Alanine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3399</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16958</p>
+ <p>KEGG: C00099</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_8aonn_c" name="8-Amino-7-oxononanoate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H17NO3</p>
+ <p>PUBCHEM: 4327</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 12266 15830</p>
+ <p>KEGG: C01092</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmso_e" name="Dimethyl-sulfoxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>PUBCHEM: 13325</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28262</p>
+ <p>KEGG: C11143</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_c" name="R-Pantothenate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>PUBCHEM: 4121</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ <p>KEGG: C00864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe180_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_e" name="5-Dehydro-D-gluconate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4301</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17426</p>
+ <p>KEGG: C01062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmso_p" name="Dimethyl-sulfoxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>PUBCHEM: 13325</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28262</p>
+ <p>KEGG: C11143</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps141_c" name="phosphatidylserine-ditetradec-7-enoyl-n-C141" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61N1O10P1</p>
+ <p>PUBCHEM: 5698</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbt6p_c" name="Arbutin-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H15O10P</p>
+ <p>PUBCHEM: 8438</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06187</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe180_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uamag_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H39N5O23P2</p>
+ <p>PUBCHEM: 3960</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16970</p>
+ <p>KEGG: C00692</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pmcoa_c" name="Pimeloyl-CoA" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H41N7O19P3S</p>
+ <p>PUBCHEM: 4302</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 15504</p>
+ <p>KEGG: C01063</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_atp_c" name="ATP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O13P3</p>
+ <p>PUBCHEM: 3304</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15422</p>
+ <p>KEGG: C00002</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_e" name="UMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 3405</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16695</p>
+ <p>KEGG: C00105</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_e" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_p" name="UMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 3405</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16695</p>
+ <p>KEGG: C00105</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_coa_c" name="Coenzyme-A" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H32N7O16P3S</p>
+ <p>PUBCHEM: 3312</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15346</p>
+ <p>KEGG: C00010</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDglu_c" name="L-alanine-D-glutamate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_p" name="Deoxyinosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>PUBCHEM: 7859</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28997</p>
+ <p>KEGG: C05512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hbcoa_c" name="S-3-Hydroxybutanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H38N7O18P3S</p>
+ <p>PUBCHEM: 4375</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15453</p>
+ <p>KEGG: C01144</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dutp_c" name="dUTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O14P3</p>
+ <p>PUBCHEM: 3744</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 17625</p>
+ <p>KEGG: C00460</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_c" name="Deoxyinosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>PUBCHEM: 7859</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28997</p>
+ <p>KEGG: C05512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crnDcoa_c" name="D-carnitinyl-CoA" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O18P3S</p>
+ <p>PUBCHEM: 605</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_e" name="Deoxyinosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>PUBCHEM: 7859</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28997</p>
+ <p>KEGG: C05512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur1p_e" name="D-Glucuronate-1-phosphate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>PUBCHEM: 7759</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28547</p>
+ <p>KEGG: C05385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ohph_c" name="2-Octaprenyl-6-hydroxyphenol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C46H70O2</p>
+ <p>PUBCHEM: 8106</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1233</p>
+ <p>KEGG: C05811</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_p" name="GTP" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>PUBCHEM: 3346</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15996</p>
+ <p>KEGG: C00044</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amob_c" name="S-Adenosyl-4-methylthio-2-oxobutanoate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O6S</p>
+ <p>PUBCHEM: 7057</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16490</p>
+ <p>KEGG: C04425</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp3Oag_p" name="Undecaprenyl-diphosphate-O-antigene-3x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C127H210O58P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_e" name="GTP" compartment="e" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>PUBCHEM: 3346</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15996</p>
+ <p>KEGG: C00044</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_c" name="GTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>PUBCHEM: 3346</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15996</p>
+ <p>KEGG: C00044</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyst__L_c" name="L-Cystathionine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4S</p>
+ <p>PUBCHEM: 5347</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17482</p>
+ <p>KEGG: C02291</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_p" name="Adenosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3512</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16335</p>
+ <p>KEGG: C00212</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3mop_c" name="S-3-Methyl-2-oxopentanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O3</p>
+ <p>PUBCHEM: 3940</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15614</p>
+ <p>KEGG: C00671</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_p" name="Cob-I-alamin" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>PUBCHEM: 4110</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15982</p>
+ <p>KEGG: C00853</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_valtrna_c" name="L-Valyl-tRNA-Val" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NOR</p>
+ <p>PUBCHEM: 5555</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29164</p>
+ <p>KEGG: C02554</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_p" name="Nitrite" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>PUBCHEM: 3388</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16301</p>
+ <p>KEGG: C00088</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_p" name="fe3dhbzs3_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_c" name="Cob-I-alamin" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>PUBCHEM: 4110</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15982</p>
+ <p>KEGG: C00853</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_e" name="Cob-I-alamin" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>PUBCHEM: 4110</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15982</p>
+ <p>KEGG: C00853</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_e" name="Nitrite" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>PUBCHEM: 3388</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16301</p>
+ <p>KEGG: C00088</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_e" name="fe3dhbzs3_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_c" name="fe3dhbzs3_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_c" name="Nitrite" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>PUBCHEM: 3388</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16301</p>
+ <p>KEGG: C00088</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mecdp_c" name="2-C-methyl-D-erythritol-2-4-cyclodiphosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O9P2</p>
+ <p>PUBCHEM: 13625</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18425</p>
+ <p>KEGG: C11453</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ncam_c" name="Nicotinamide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6N2O</p>
+ <p>PUBCHEM: 3453</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17154</p>
+ <p>KEGG: C00153</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_p" name="KDO-2-lipid-A" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>PUBCHEM: 8298</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 27963</p>
+ <p>KEGG: C06026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ombzl_c" name="2-Octaprenyl-6-methoxy-1-4-benzoquinol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H72O3</p>
+ <p>PUBCHEM: 958 ??5650</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17551</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_e" name="KDO-2-lipid-A" compartment="e" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>PUBCHEM: 8298</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 27963</p>
+ <p>KEGG: C06026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb6p_c" name="L-ascorbate-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O9P</p>
+ <p>PUBCHEM: 656479???3385</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_c" name="KDO-2-lipid-A" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>PUBCHEM: 8298</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 27963</p>
+ <p>KEGG: C06026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbp_c" name="Carbamoyl-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2NO5P</p>
+ <p>PUBCHEM: 3469</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17672</p>
+ <p>KEGG: C00169</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_e" name="aerobactin-minus-Fe3" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_c" name="L-Asparagine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>PUBCHEM: 3452</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17196</p>
+ <p>KEGG: C00152</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_e" name="L-Asparagine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>PUBCHEM: 3452</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17196</p>
+ <p>KEGG: C00152</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_p" name="D-Alanyl-D-alanine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>PUBCHEM: 4239</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16576</p>
+ <p>KEGG: C00993</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_c" name="aerobactin-minus-Fe3" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_e" name="D-Alanyl-D-alanine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>PUBCHEM: 4239</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16576</p>
+ <p>KEGG: C00993</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_p" name="L-Asparagine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>PUBCHEM: 3452</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17196</p>
+ <p>KEGG: C00152</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2omph_c" name="2-Octaprenyl-6-methoxyphenol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H72O2</p>
+ <p>PUBCHEM: 8107</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1235</p>
+ <p>KEGG: C05812</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_p" name="aerobactin-minus-Fe3" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_c" name="D-Alanyl-D-alanine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>PUBCHEM: 4239</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16576</p>
+ <p>KEGG: C00993</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_p" name="Hydrogen-peroxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>PUBCHEM: 3329</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16240</p>
+ <p>KEGG: C00027</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5aizc_c" name="5-amino-1-5-phospho-D-ribosyl-imidazole-4-carboxylate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O9P</p>
+ <p>PUBCHEM: 7321</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28413</p>
+ <p>KEGG: C04751</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl7_c" name="Cobalt-precorrin-7" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H49CoN4O16</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16244</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_c" name="Hydrogen-peroxide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>PUBCHEM: 3329</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16240</p>
+ <p>KEGG: C00027</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nflgln_c" name="N-Formimino-L-glutamate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N2O4</p>
+ <p>PUBCHEM: 3728</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 7274</p>
+ <p>KEGG: C00439</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_e" name="Hydrogen-peroxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>PUBCHEM: 3329</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16240</p>
+ <p>KEGG: C00027</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hddecACP_c" name="R-3-Hydroxydodecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H43N2O9PRS</p>
+ <p>PUBCHEM: 8052</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05757</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhba_c" name="2-3-Dihydroxybenzoyl-adenylate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H17N5O10P</p>
+ <p>PUBCHEM: 6734</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04030</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_e" name="octanoate-n-C80" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>PUBCHEM: 8658</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28837</p>
+ <p>KEGG: C06423</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acglu_c" name="N-Acetyl-L-glutamate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9NO5</p>
+ <p>PUBCHEM: 3897</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17533 44337</p>
+ <p>KEGG: C00624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_p" name="tetradecanoate-n-C140" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>PUBCHEM: 8659</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28875 30807</p>
+ <p>KEGG: C06424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl3_c" name="Cobalt-precorrin-3" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H41CoN4O16</p>
+ <p>PUBCHEM: 13706</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11539</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cddec5eACP_c" name="cis-dodec-5-enoyl-acyl-carrier-protein-n-C121" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_e" name="tetradecanoate-n-C140" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>PUBCHEM: 8659</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28875 30807</p>
+ <p>KEGG: C06424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_c" name="tetradecanoate-n-C140" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>PUBCHEM: 8659</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28875 30807</p>
+ <p>KEGG: C06424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_c" name="Uracil" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>PUBCHEM: 3406</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17568</p>
+ <p>KEGG: C00106</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_e" name="Glycerol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>PUBCHEM: 3416</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17754</p>
+ <p>KEGG: C00116</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_c" name="Glycerol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>PUBCHEM: 3416</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17754</p>
+ <p>KEGG: C00116</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_e" name="Uracil" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>PUBCHEM: 3406</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17568</p>
+ <p>KEGG: C00106</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum_p" name="N-Acetylmuramate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>PUBCHEM: 5676</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02713</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_au_c" name="Gold-Au" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29287</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_p" name="Uracil" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>PUBCHEM: 3406</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17568</p>
+ <p>KEGG: C00106</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4p_c" name="KDO-2-lipid-IV-A-with-palmitoleoyl" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C100H176N2O38P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_p" name="Glycerol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>PUBCHEM: 3416</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17754</p>
+ <p>KEGG: C00116</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chit6p_c" name="chit6p_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 853844</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_p" name="Trehalose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 4320</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16551</p>
+ <p>KEGG: C01083</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_c" name="Trehalose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 4320</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16551</p>
+ <p>KEGG: C01083</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpglc_c" name="CDP-glucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H23N3O16P2</p>
+ <p>PUBCHEM: 3784</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00501</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_e" name="Trehalose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 4320</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16551</p>
+ <p>KEGG: C01083</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps2_ST_p" name="ps2_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_p" name="L-Serine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 3365</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17115</p>
+ <p>KEGG: C00065</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_p" name="Acetate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>PUBCHEM: 3335</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15366</p>
+ <p>KEGG: C00033</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_c" name="L-Serine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 3365</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17115</p>
+ <p>KEGG: C00065</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_e" name="L-Serine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 3365</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17115</p>
+ <p>KEGG: C00065</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ahmmp_c" name="4-Amino-5-hydroxymethyl-2-methylpyrimidine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O</p>
+ <p>PUBCHEM: 4498</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16892</p>
+ <p>KEGG: C01279</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhmb_c" name="R-2-3-Dihydroxy-3-methylbutanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O4</p>
+ <p>PUBCHEM: 6935</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15684 49072</p>
+ <p>KEGG: C04272</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_c" name="Acetate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>PUBCHEM: 3335</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15366</p>
+ <p>KEGG: C00033</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_e" name="Acetate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>PUBCHEM: 3335</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15366</p>
+ <p>KEGG: C00033</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odecg3p_c" name="2-octadecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_p" name="Thiocyanate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>PUBCHEM: 4888</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29200</p>
+ <p>KEGG: C01755</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dmmql8_c" name="2-Demethylmenaquinol-8" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C50H72O2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbzcoa_c" name="O-Succinylbenzoyl-CoA" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C32H39N7O20P3S</p>
+ <p>PUBCHEM: 6045</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 15509</p>
+ <p>KEGG: C03160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_e" name="Thiocyanate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>PUBCHEM: 4888</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29200</p>
+ <p>KEGG: C01755</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_c" name="Thiocyanate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>PUBCHEM: 4888</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29200</p>
+ <p>KEGG: C01755</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_p" name="Cobinamide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>PUBCHEM: 8069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28956</p>
+ <p>KEGG: C05774</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm3p_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H52N6O19</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_c" name="Acetaldehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>PUBCHEM: 3384</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15343</p>
+ <p>KEGG: C00084</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_p" name="core-oligosaccharide-lipid-A" compartment="p" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr141_c" name="1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H56O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_e" name="Acetaldehyde" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>PUBCHEM: 3384</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15343</p>
+ <p>KEGG: C00084</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_c" name="Cobinamide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>PUBCHEM: 8069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28956</p>
+ <p>KEGG: C05774</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_e" name="Cobinamide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>PUBCHEM: 8069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28956</p>
+ <p>KEGG: C05774</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_c" name="core-oligosaccharide-lipid-A" compartment="c" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_p" name="Acetaldehyde" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>PUBCHEM: 3384</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15343</p>
+ <p>KEGG: C00084</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_e" name="core-oligosaccharide-lipid-A" compartment="e" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr141_p" name="1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H56O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_c" name="Xanthosine-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>PUBCHEM: 3925</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15652</p>
+ <p>KEGG: C00655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_e" name="Xanthosine-5-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>PUBCHEM: 3925</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15652</p>
+ <p>KEGG: C00655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_p" name="magnesium" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>PUBCHEM: 3599</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18420</p>
+ <p>KEGG: C00305</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_p" name="Xanthosine-5-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>PUBCHEM: 3925</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15652</p>
+ <p>KEGG: C00655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmalt_c" name="Acetyl-maltose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H24O12</p>
+ <p>PUBCHEM: 5209</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 2411</p>
+ <p>KEGG: C02130</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhpmp_c" name="Dihydroneopterin-monophosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N5O7P</p>
+ <p>PUBCHEM: 8213</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 48954</p>
+ <p>KEGG: C05925</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_e" name="magnesium" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>PUBCHEM: 3599</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18420</p>
+ <p>KEGG: C00305</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_c" name="magnesium" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>PUBCHEM: 3599</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18420</p>
+ <p>KEGG: C00305</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhq_c" name="3-Dehydroquinate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O6</p>
+ <p>PUBCHEM: 4196</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17947 32364</p>
+ <p>KEGG: C00944</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhptd_c" name="4-5-dihydroxy-2-3-pentanedione" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O4</p>
+ <p>PUBCHEM: 14000</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11838</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uLa4n_p" name="undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H100N1O7P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_minohp_p" name="myo-Inositol-hexakisphosphate" compartment="p" charge="-12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>PUBCHEM: 4428</p>
+ <p>CHARGE: -12</p>
+ <p>CHEBI: 17401</p>
+ <p>KEGG: C01204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_p" name="Ammonium" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>PUBCHEM: 4547</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 28938</p>
+ <p>KEGG: C01342</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_e" name="Inosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>PUBCHEM: 3588</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17596</p>
+ <p>KEGG: C00294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uLa4n_c" name="undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H100N1O7P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_e" name="Ammonium" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>PUBCHEM: 4547</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 28938</p>
+ <p>KEGG: C01342</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_c" name="Ammonium" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>PUBCHEM: 4547</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 28938</p>
+ <p>KEGG: C01342</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_minohp_e" name="myo-Inositol-hexakisphosphate" compartment="e" charge="-12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>PUBCHEM: 4428</p>
+ <p>CHARGE: -12</p>
+ <p>CHEBI: 17401</p>
+ <p>KEGG: C01204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mdru1p_c" name="5-Methylthio-5-deoxy-D-ribulose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7PS</p>
+ <p>PUBCHEM: 7183</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28096</p>
+ <p>KEGG: C04582</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_e" name="salchs2_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_c" name="salchs2_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dr5p_c" name="2-Deoxy-D-ribose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>PUBCHEM: 3942</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16132</p>
+ <p>KEGG: C00673</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_p" name="salchs2_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe160_p" name="phosphatidylethanolamine-dihexadecanoyl-n-C160" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H74N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p5p_p" name="two-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C80H124N16O42</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe160_c" name="phosphatidylethanolamine-dihexadecanoyl-n-C160" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H74N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_e" name="GDP" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>PUBCHEM: 3337</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17552</p>
+ <p>KEGG: C00035</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_c" name="GDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>PUBCHEM: 3337</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17552</p>
+ <p>KEGG: C00035</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre6p_c" name="alpha-alpha-Trehalose-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H21O14P</p>
+ <p>PUBCHEM: 3958</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18283</p>
+ <p>KEGG: C00689</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5aop_c" name="5-Amino-4-oxopentanoate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>PUBCHEM: 3719</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17549</p>
+ <p>KEGG: C00430</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_p" name="GDP" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>PUBCHEM: 3337</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17552</p>
+ <p>KEGG: C00035</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mta_c" name="5-Methylthioadenosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H15N5O3S</p>
+ <p>PUBCHEM: 3470</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17509</p>
+ <p>KEGG: C00170</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdecg3p_c" name="1-tetradecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H33O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_c" name="5-Dehydro-D-gluconate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4301</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17426</p>
+ <p>KEGG: C01062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3c3hmp_c" name="3-Carboxy-3-hydroxy-4-methylpentanoate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O5</p>
+ <p>PUBCHEM: 5516</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 1178 35128</p>
+ <p>KEGG: C02504</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddcacoa_c" name="Dodecanoyl-CoA-n-C120CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H54N7O17P3S</p>
+ <p>PUBCHEM: 4951</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15521</p>
+ <p>KEGG: C01832</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_e" name="S-Propane-1-2-diol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5840</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29002</p>
+ <p>KEGG: C02917</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_c" name="S-Propane-1-2-diol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5840</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29002</p>
+ <p>KEGG: C02917</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdecg3p_p" name="1-tetradecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H33O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmfurn_c" name="4-hydroxy-5-methyl-3-2H-furanone" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6O3</p>
+ <p>PUBCHEM: 4564493??3441</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 11851 16530</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_p" name="S-Propane-1-2-diol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5840</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29002</p>
+ <p>KEGG: C02917</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp12Oag_p" name="Undecaprenyl-diphosphate-O-antigene-12x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C343H570O211P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p4p_p" name="two-linked-disacharide-pentapeptide-and-tetrapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C77H119N15O41</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaarg_c" name="tRNA-Arg" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4785</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29171</p>
+ <p>KEGG: C01636</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4pasp_c" name="4-Phospho-L-aspartate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO7P</p>
+ <p>PUBCHEM: 5980</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15836</p>
+ <p>KEGG: C03082</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_c" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_e" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_p" name="Cytosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>PUBCHEM: 3670</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16040</p>
+ <p>KEGG: C00380</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_p" name="5-Dehydro-D-gluconate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4301</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17426</p>
+ <p>KEGG: C01062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp15Oag_p" name="Undecaprenyl-diphosphate-O-antigene-15x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C415H690O262P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam1p_c" name="D-Glucosamine-1-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 8412</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 27625</p>
+ <p>KEGG: C06156</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_c" name="Cytosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>PUBCHEM: 3670</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16040</p>
+ <p>KEGG: C00380</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_e" name="Cytosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>PUBCHEM: 3670</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16040</p>
+ <p>KEGG: C00380</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_p" name="alpha-D-Galactose-1-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3734</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17973</p>
+ <p>KEGG: C00446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtbt_c" name="Dethiobiotin" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N2O3</p>
+ <p>PUBCHEM: 5017</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16691</p>
+ <p>KEGG: C01909</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3mob_c" name="3-Methyl-2-oxobutanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O3</p>
+ <p>PUBCHEM: 3441</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 11851 16530</p>
+ <p>KEGG: C00141</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_e" name="alpha-D-Galactose-1-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3734</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17973</p>
+ <p>KEGG: C00446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_25drapp_c" name="2-5-Diamino-6-ribosylamino-4-3H-pyrimidinone-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H14N5O8P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_c" name="alpha-D-Galactose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3734</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17973</p>
+ <p>KEGG: C00446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_c" name="UMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 3405</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16695</p>
+ <p>KEGG: C00105</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg160_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xdp_c" name="XDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O12P2</p>
+ <p>PUBCHEM: 4545</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01337</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnagly_c" name="tRNA-Gly" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4791</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29176</p>
+ <p>KEGG: C01642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_e" name="Xanthine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>PUBCHEM: 3675</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17712</p>
+ <p>KEGG: C00385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4h2kpi_c" name="4-Hydroxy-2-ketopimelate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O6</p>
+ <p>PUBCHEM: 7924</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_c" name="Xanthine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>PUBCHEM: 3675</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17712</p>
+ <p>KEGG: C00385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_p" name="Protoheme" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>PUBCHEM: 3334</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17627</p>
+ <p>KEGG: C00032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_p" name="Salmochelin-SX" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6hmhpt_c" name="6-hydroxymethyl-dihydropterin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9N5O2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_p" name="Xanthine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>PUBCHEM: 3675</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17712</p>
+ <p>KEGG: C00385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum6p_c" name="N-acetylmuramate-6-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H17NO11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_iasp_c" name="Iminoaspartate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H3NO4</p>
+ <p>PUBCHEM: 8133</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05840</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_didp_c" name="dIDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O10P2</p>
+ <p>PUBCHEM: 4549</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg161_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_e" name="Hypoxanthine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>PUBCHEM: 3560</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17368</p>
+ <p>KEGG: C00262</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_c" name="Hypoxanthine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>PUBCHEM: 3560</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17368</p>
+ <p>KEGG: C00262</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_p" name="Salmochelin-S4" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg161_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_p" name="Hypoxanthine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>PUBCHEM: 3560</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17368</p>
+ <p>KEGG: C00262</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_p" name="Propionate-n-C30" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>PUBCHEM: 3463</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30768</p>
+ <p>KEGG: C00163</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_c" name="Spermidine" compartment="c" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>PUBCHEM: 3609</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 16610</p>
+ <p>KEGG: C00315</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_e" name="Spermidine" compartment="e" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>PUBCHEM: 3609</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 16610</p>
+ <p>KEGG: C00315</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein3px3p_p" name="two-disacharide-linked-murein-units-tripeptide-crosslinked-tripeptide-A2pm-A2pm--middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H102N12O37</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_p" name="Spermidine" compartment="p" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>PUBCHEM: 3609</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 16610</p>
+ <p>KEGG: C00315</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_c" name="Propionate-n-C30" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>PUBCHEM: 3463</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30768</p>
+ <p>KEGG: C00163</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_e" name="Propionate-n-C30" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>PUBCHEM: 3463</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30768</p>
+ <p>KEGG: C00163</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbgrd_p" name="periplasmic-disulfide-isomerasethiol-disulphide-oxidase-reduced" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hexACP_c" name="Hexanoyl-ACP-n-C60ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31N2O8PRS</p>
+ <p>PUBCHEM: 8044</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05749</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_c" name="dCMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>PUBCHEM: 3538</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15918</p>
+ <p>KEGG: C00239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal__bD_e" name="beta-D-Galactose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4738</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28260</p>
+ <p>KEGG: C01582</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_e" name="dCMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>PUBCHEM: 3538</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15918</p>
+ <p>KEGG: C00239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg120_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_p" name="dCMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>PUBCHEM: 3538</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15918</p>
+ <p>KEGG: C00239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg120_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_c" name="L-Fucose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 4264</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 2181</p>
+ <p>KEGG: C01019</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_e" name="L-Fucose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 4264</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 2181</p>
+ <p>KEGG: C01019</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocpalm9eACP_c" name="3-oxo-cis-palm-9-eoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H47N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppi_c" name="Diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO7P2</p>
+ <p>PUBCHEM: 3315</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18361 29888</p>
+ <p>KEGG: C00013</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oxam_c" name="Oxamate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2NO3</p>
+ <p>PUBCHEM: 4622</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18058</p>
+ <p>KEGG: C01444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malACP_c" name="Malonyl-acyl-carrier-protein" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N2O10PRS</p>
+ <p>PUBCHEM: 4431</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01209</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_p" name="L-Fucose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 4264</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 2181</p>
+ <p>KEGG: C01019</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uaagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-N-acetylglucosamine-L-ala-D-glu-meso-2-6-diaminopimeloyl-D-ala-D-ala" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C95H152N8O28P2</p>
+ <p>PUBCHEM: 8186</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5apru_c" name="5-Amino-6-5-phosphoribosylamino-uracil" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N4O9P</p>
+ <p>PUBCHEM: 4487</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18337</p>
+ <p>KEGG: C01268</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_p" name="Guanine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>PUBCHEM: 3541</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16235</p>
+ <p>KEGG: C00242</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fprica_c" name="5-Formamido-1-5-phospho-D-ribosyl-imidazole-4-carboxamide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N4O9P</p>
+ <p>PUBCHEM: 7305</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18381</p>
+ <p>KEGG: C04734</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu5sa_c" name="L-Glutamate-5-semialdehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>PUBCHEM: 4392</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17232</p>
+ <p>KEGG: C01165</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmet_p" name="S-Methyl-L-methionine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>PUBCHEM: 6054</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 17728</p>
+ <p>KEGG: C03172</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_c" name="D-Galactose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3424</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4139</p>
+ <p>KEGG: C00124</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_e" name="D-Galactose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3424</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4139</p>
+ <p>KEGG: C00124</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmet_e" name="S-Methyl-L-methionine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>PUBCHEM: 6054</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 17728</p>
+ <p>KEGG: C03172</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_p" name="D-Galactose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3424</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4139</p>
+ <p>KEGG: C00124</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gar_c" name="N1-5-Phospho-D-ribosyl-glycinamide" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O8P</p>
+ <p>PUBCHEM: 6578</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18349</p>
+ <p>KEGG: C03838</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur1p_p" name="D-Glucuronate-1-phosphate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>PUBCHEM: 7759</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28547</p>
+ <p>KEGG: C05385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_e" name="Salmochelin-S4-Fe-III" compartment="e" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_p" name="Cytidine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>PUBCHEM: 3758</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17562</p>
+ <p>KEGG: C00475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_c" name="Salmochelin-S4-Fe-III" compartment="c" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_c" name="Cytidine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>PUBCHEM: 3758</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17562</p>
+ <p>KEGG: C00475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpp_p" name="Undecaprenyl-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O4P</p>
+ <p>PUBCHEM: 3641</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16141</p>
+ <p>KEGG: C00348</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_p" name="Salmochelin-S4-Fe-III" compartment="p" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_e" name="Cytidine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>PUBCHEM: 3758</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17562</p>
+ <p>KEGG: C00475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tpr3dpcoa_c" name="2--5--triphosphoribosyl-3-dephospho-CoA" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C26H40N7O26P5S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg180_c" name="Phosphatidylglycerol-dioctadecanoyl-n-C180" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H82O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn120_p" name="cardiolipin-tetradodecanoyl-n-C120" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C57H108O17P2</p>
+ <p>PUBCHEM: 8259</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_p" name="Ferrioxamine-E-fe" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_c" name="Guanine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>PUBCHEM: 3541</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16235</p>
+ <p>KEGG: C00242</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbaox_p" name="periplasmic-protein-disulfide-isomerase-I-oxidized" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_c" name="Ferrioxamine-E-fe" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_e" name="Guanine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>PUBCHEM: 3541</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16235</p>
+ <p>KEGG: C00242</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_e" name="Ferrioxamine-E-fe" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_e" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="e" charge="-15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -15</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4d6dg_c" name="dTDP-4-dehydro-6-deoxy-D-glucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H22N2O15P2</p>
+ <p>PUBCHEM: 3956</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16128</p>
+ <p>KEGG: C00687</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_halipa_e" name="hepta-acylated-KDO-2-lipid-A" compartment="e" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C126H226N2O40P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpabeq_c" name="CDP-abequose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H23N3O14P2</p>
+ <p>PUBCHEM: 4916</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16049</p>
+ <p>KEGG: C01788</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psd5p_c" name="psd5p_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 4395</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18116</p>
+ <p>KEGG: C01168</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_p" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="p" charge="-15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -15</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_c" name="coprogen-unloaded-no-Fe-III-" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_e" name="coprogen-unloaded-no-Fe-III-" compartment="e" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trdox_c" name="Oxidized-thioredoxin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>PUBCHEM: 3636</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18191</p>
+ <p>KEGG: C00343</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_p" name="coprogen-unloaded-no-Fe-III-" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa140_c" name="1-2-ditetradecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H59O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdecg3p_p" name="1-hexadecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H37O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adpglc_c" name="ADPglucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O15P2</p>
+ <p>PUBCHEM: 3781</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15751</p>
+ <p>KEGG: C00498</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acg5sa_c" name="N-Acetyl-L-glutamate-5-semialdehyde" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10NO4</p>
+ <p>PUBCHEM: 4470</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16319 29123</p>
+ <p>KEGG: C01250</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa140_p" name="1-2-ditetradecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H59O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2me4p_c" name="2-C-methyl-D-erythritol-4-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11O7P</p>
+ <p>PUBCHEM: 13606</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17764</p>
+ <p>KEGG: C11434</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt6p_c" name="Maltose-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H21O14P</p>
+ <p>PUBCHEM: 5904</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15703</p>
+ <p>KEGG: C02995</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_c" name="Reduced-glutathione" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>PUBCHEM: 3353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16856</p>
+ <p>KEGG: C00051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4p4p_p" name="two-linked-disacharide-tetrapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H114N14O40</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_p" name="Aerobactin" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>PUBCHEM: 7887</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18157</p>
+ <p>KEGG: C05554</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5prdmbz_c" name="N1-5-Phospho-alpha-D-ribosyl-5-6-dimethylbenzimidazole" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H17N2O7P</p>
+ <p>PUBCHEM: 7342</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16837</p>
+ <p>KEGG: C04778</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_e" name="Shikimate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>PUBCHEM: 3776</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16119</p>
+ <p>KEGG: C00493</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_c" name="Adenosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3512</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16335</p>
+ <p>KEGG: C00212</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_c" name="Aerobactin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>PUBCHEM: 7887</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18157</p>
+ <p>KEGG: C05554</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_e" name="Aerobactin" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>PUBCHEM: 7887</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18157</p>
+ <p>KEGG: C05554</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_c" name="Enterochelin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>PUBCHEM: 8116</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28855</p>
+ <p>KEGG: C05821</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_entermg_c" name="entermg_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_p" name="R-Pantothenate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>PUBCHEM: 4121</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ <p>KEGG: C00864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_p" name="Ferrioxamine-E" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_p" name="H" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>PUBCHEM: 3380</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15378</p>
+ <p>KEGG: C00080</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppt_e" name="Phosphonate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>PUBCHEM: 8926</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06701</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_p" name="1-5-Diaminopentane" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>PUBCHEM: 4816</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18127</p>
+ <p>KEGG: C01672</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lcts_e" name="Lactose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3542</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 36219</p>
+ <p>KEGG: C00243</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_e" name="H" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>PUBCHEM: 3380</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15378</p>
+ <p>KEGG: C00080</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_c" name="H" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>PUBCHEM: 3380</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15378</p>
+ <p>KEGG: C00080</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_c" name="1-5-Diaminopentane" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>PUBCHEM: 4816</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18127</p>
+ <p>KEGG: C01672</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2amsa_c" name="2-Aminomalonate-semialdehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5NO3</p>
+ <p>PUBCHEM: 13986</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 37012</p>
+ <p>KEGG: C11822</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_e" name="Salmochelin-S4" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lcts_p" name="Lactose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3542</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 36219</p>
+ <p>KEGG: C00243</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppt_p" name="Phosphonate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>PUBCHEM: 8926</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06701</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_e" name="1-5-Diaminopentane" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>PUBCHEM: 4816</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18127</p>
+ <p>KEGG: C01672</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dcit_e" name="Fe-III-dicitrate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H10FeO14</p>
+ <p>PUBCHEM: 8472</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06229</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malcoa_c" name="Malonyl-CoA" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H33N7O19P3S</p>
+ <p>PUBCHEM: 3383</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 15531</p>
+ <p>KEGG: C00083</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fldrd_c" name="flavodoxin-reduced" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>PUBCHEM: 5705</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02745</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ins_c" name="2ins_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 3959</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17811</p>
+ <p>KEGG: C00691</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_p" name="Oxidized-glutathione" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>PUBCHEM: 3427</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17858</p>
+ <p>KEGG: C00127</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4d6dm_c" name="dTDP-4-dehydro-6-deoxy-L-mannose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H22N2O15P2</p>
+ <p>PUBCHEM: 3957</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15744</p>
+ <p>KEGG: C00688</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adp_c" name="ADP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10P2</p>
+ <p>PUBCHEM: 3310</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16761</p>
+ <p>KEGG: C00008</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_e" name="Oxidized-glutathione" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>PUBCHEM: 3427</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17858</p>
+ <p>KEGG: C00127</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ugmd_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H51N7O26P2</p>
+ <p>PUBCHEM: 7429</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04877</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_e" name="Zinc" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>PUBCHEM: 3340</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29105</p>
+ <p>KEGG: C00038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_c" name="D-Malate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3780</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30796</p>
+ <p>KEGG: C00497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_e" name="D-Malate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3780</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30796</p>
+ <p>KEGG: C00497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_e" name="udcpo5_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe141_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_e" name="Protoheme" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>PUBCHEM: 3334</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17627</p>
+ <p>KEGG: C00032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdeACP_c" name="cis-tetradec-7-enoyl-acyl-carrier-protein-n-C141" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp4Oag_p" name="Undecaprenyl-diphosphate-O-antigene-4x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H250O75P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_c" name="Protoheme" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>PUBCHEM: 3334</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17627</p>
+ <p>KEGG: C00032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_p" name="D-Malate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3780</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30796</p>
+ <p>KEGG: C00497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe120_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>PUBCHEM: 7069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe141_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3psme_c" name="5-O-1-Carboxyvinyl-3-phosphoshikimate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H9O10P</p>
+ <p>PUBCHEM: 4488</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16257</p>
+ <p>KEGG: C01269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl5b_c" name="Cobalt-precorrin-5b" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H43CoN4O16</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16243</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_c" name="Fumarate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>PUBCHEM: 3422</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18012</p>
+ <p>KEGG: C00122</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adphep__DD_c" name="ADP-D-glycero-D-manno-heptose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N5O16P2</p>
+ <p>PUBCHEM: 8633</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16693</p>
+ <p>KEGG: C06397</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_e" name="Fumarate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>PUBCHEM: 3422</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18012</p>
+ <p>KEGG: C00122</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5caiz_c" name="5-phosphoribosyl-5-carboxyaminoimidazole" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O9P</p>
+ <p>PUBCHEM: 7321</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28413</p>
+ <p>KEGG: C04751</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_p" name="alpha-D-Ribose-5-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 3417</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17797</p>
+ <p>KEGG: C00117</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cgmp_e" name="2-3-Cyclic-GMP" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>PUBCHEM: 8444</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_p" name="Fumarate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>PUBCHEM: 3422</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18012</p>
+ <p>KEGG: C00122</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmn_c" name="Undecaprenyl-diphosphate-galactose-rhamnose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C67H110O16P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cgmp_p" name="2-3-Cyclic-GMP" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>PUBCHEM: 8444</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_c" name="alpha-D-Ribose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 3417</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17797</p>
+ <p>KEGG: C00117</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_e" name="alpha-D-Ribose-5-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 3417</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17797</p>
+ <p>KEGG: C00117</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnalys_c" name="tRNA-Lys" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4795</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29185</p>
+ <p>KEGG: C01646</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp160_p" name="Phosphatidylglycerophosphate-dihexadecanoyl-n-C160" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_p" name="Enterochelin" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>PUBCHEM: 8116</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28855</p>
+ <p>KEGG: C05821</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp160_c" name="Phosphatidylglycerophosphate-dihexadecanoyl-n-C160" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tet_p" name="Tetrathionate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O6S4</p>
+ <p>PUBCHEM: 5169</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15226 16853</p>
+ <p>KEGG: C02084</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apoACP_c" name="apoprotein-acyl-carrier-protein" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: RHO</p>
+ <p>PUBCHEM: 6463</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03688</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmpp_c" name="Dimethylallyl-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P2</p>
+ <p>PUBCHEM: 3534</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16057</p>
+ <p>KEGG: C00235</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_e" name="Enterochelin" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>PUBCHEM: 8116</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28855</p>
+ <p>KEGG: C05821</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtp_c" name="XTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O15P3</p>
+ <p>PUBCHEM: 3968</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00700</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_c" name="Adenine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>PUBCHEM: 3447</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16708</p>
+ <p>KEGG: C00147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_e" name="Adenine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>PUBCHEM: 3447</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16708</p>
+ <p>KEGG: C00147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_c" name="Salmochelin-S4" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt_p" name="Galactitol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4837</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16813</p>
+ <p>KEGG: C01697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpg160_c" name="cyclopropane-phosphatidylglycerol-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H74O10P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_p" name="Adenine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>PUBCHEM: 3447</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16708</p>
+ <p>KEGG: C00147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt_e" name="Galactitol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4837</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16813</p>
+ <p>KEGG: C01697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_odecoa_c" name="Octadecenoyl-CoA-n-C181CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O17P3S</p>
+ <p>PUBCHEM: 47205526</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16218</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odecg3p_p" name="2-octadecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_e" name="4hthr_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8326</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06056</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_app_c" name="R-1-Amino-2-propanol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>PUBCHEM: 6071</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15675</p>
+ <p>KEGG: C03194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_p" name="2-3-diaminopropionate" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>PUBCHEM: 8629</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18383</p>
+ <p>KEGG: C06393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_c" name="4-Hydroxy-L-threonine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO4</p>
+ <p>PUBCHEM: 8326</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06056</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppp9_c" name="Protoporphyrin" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H32N4O4</p>
+ <p>PUBCHEM: 5261</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15430</p>
+ <p>KEGG: C02191</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_e" name="2-3-diaminopropionate" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>PUBCHEM: 8629</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18383</p>
+ <p>KEGG: C06393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dh3dgal6p_c" name="2-Dehydro-3-deoxy-D-galactonate-6-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O9P</p>
+ <p>PUBCHEM: 4505</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17860</p>
+ <p>KEGG: C01286</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_p" name="4hthr_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8326</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06056</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_c" name="2-3-diaminopropionate" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>PUBCHEM: 8629</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18383</p>
+ <p>KEGG: C06393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urdglyc_c" name="--Ureidoglycolate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5N2O4</p>
+ <p>PUBCHEM: 3878</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15412</p>
+ <p>KEGG: C00603</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_p" name="octadecanoate-n-C180" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>PUBCHEM: 4692</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 25629</p>
+ <p>KEGG: C01530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_c" name="L-Isoleucine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3697</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17191</p>
+ <p>KEGG: C00407</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chitob_e" name="Chitobiose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H28N2O11</p>
+ <p>PUBCHEM: 4818</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01674</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobn_c" name="Cobyrinate" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H52CoN4O14</p>
+ <p>PUBCHEM: 8068</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 33907</p>
+ <p>KEGG: C05773</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacmam_c" name="UDP-N-acetyl-D-mannosamine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 4397</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16287</p>
+ <p>KEGG: C01170</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_e" name="L-Isoleucine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3697</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17191</p>
+ <p>KEGG: C00407</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_p" name="Reduced-glutathione" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>PUBCHEM: 3353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16856</p>
+ <p>KEGG: C00051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_e" name="octadecanoate-n-C180" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>PUBCHEM: 4692</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 25629</p>
+ <p>KEGG: C01530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_c" name="octadecanoate-n-C180" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>PUBCHEM: 4692</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 25629</p>
+ <p>KEGG: C01530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urocan_c" name="Urocanate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5N2O2</p>
+ <p>PUBCHEM: 4043</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30817</p>
+ <p>KEGG: C00785</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_e" name="Reduced-glutathione" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>PUBCHEM: 3353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16856</p>
+ <p>KEGG: C00051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_p" name="L-Isoleucine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3697</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17191</p>
+ <p>KEGG: C00407</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chitob_p" name="chitob_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 4818</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01674</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_p" name="D-Lactate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3555</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 42111</p>
+ <p>KEGG: C00256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl8x_c" name="Cobalt-precorrin-8x" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H52CoN4O14</p>
+ <p>PUBCHEM: 13712</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11545</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_c" name="sulfur-dioxide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>PUBCHEM: 11497</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18422</p>
+ <p>KEGG: C09306</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpppg3_c" name="Coproporphyrinogen-III" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H40N4O8</p>
+ <p>PUBCHEM: 6127</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15439</p>
+ <p>KEGG: C03263</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_selnp_c" name="Selenophosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O3PSe</p>
+ <p>PUBCHEM: 7583</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16144</p>
+ <p>KEGG: C05172</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_e" name="D-Lactate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3555</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 42111</p>
+ <p>KEGG: C00256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_c" name="D-Lactate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3555</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 42111</p>
+ <p>KEGG: C00256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_p" name="sulfur-dioxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>PUBCHEM: 11497</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18422</p>
+ <p>KEGG: C09306</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ophb_c" name="3-Octaprenyl-4-hydroxybenzoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H69O3</p>
+ <p>PUBCHEM: 8104</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 1617 50116</p>
+ <p>KEGG: C05809</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhm3p_c" name="1-6-anhydrous-N-Acetylmuramyl-tripeptide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C26H39N5O14</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_e" name="guln__L_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb__L_p" name="L-Ascorbate" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>PUBCHEM: 3372</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29073 38290</p>
+ <p>KEGG: C00072</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_c" name="guln__L_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phpyr_c" name="Phenylpyruvate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>PUBCHEM: 3466</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30851</p>
+ <p>KEGG: C00166</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mthf_c" name="5-Methyltetrahydrofolate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N7O6</p>
+ <p>PUBCHEM: 3729</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15641</p>
+ <p>KEGG: C00440</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5cm2hmu_c" name="5-Carboxymethyl-2-hydroxymuconate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H5O7</p>
+ <p>PUBCHEM: 6862</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 2040</p>
+ <p>KEGG: C04186</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_p" name="guln__L_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb__L_e" name="L-Ascorbate" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>PUBCHEM: 3372</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29073 38290</p>
+ <p>KEGG: C00072</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_p" name="Melibiose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 7769</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28053</p>
+ <p>KEGG: C05402</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_p" name="Putrescine" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>PUBCHEM: 3434</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17148</p>
+ <p>KEGG: C00134</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl1p_c" name="D-Mannitol-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>PUBCHEM: 3917</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16298</p>
+ <p>KEGG: C00644</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_c" name="Putrescine" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>PUBCHEM: 3434</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17148</p>
+ <p>KEGG: C00134</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_c" name="Melibiose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 7769</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28053</p>
+ <p>KEGG: C05402</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uama_c" name="UDP-N-acetylmuramoyl-L-alanine" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H33N4O20P2</p>
+ <p>PUBCHEM: 4434</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16932</p>
+ <p>KEGG: C01212</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_e" name="Putrescine" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>PUBCHEM: 3434</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17148</p>
+ <p>KEGG: C00134</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_c" name="L-Glutamate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>PUBCHEM: 3327</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16015</p>
+ <p>KEGG: C00025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_e" name="L-Glutamate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>PUBCHEM: 3327</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16015</p>
+ <p>KEGG: C00025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnatrp_c" name="tRNA-Trp" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4801</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29181</p>
+ <p>KEGG: C01652</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_p" name="L-Glutamate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>PUBCHEM: 3327</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16015</p>
+ <p>KEGG: C00025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_c" name="L-tartrate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 4154</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15671 30924</p>
+ <p>KEGG: C00898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_e" name="L-tartrate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 4154</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15671 30924</p>
+ <p>KEGG: C00898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_p" name="L-tartrate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 4154</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15671 30924</p>
+ <p>KEGG: C00898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe180_c" name="phosphatidylethanolamine-dioctadecanoyl-n-C180" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H82N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl-phosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O10P2</p>
+ <p>PUBCHEM: 3535</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16001</p>
+ <p>KEGG: C00236</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu1sa_c" name="L-Glutamate-1-semialdehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>PUBCHEM: 6504</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15757</p>
+ <p>KEGG: C03741</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thmmp_c" name="Thiamin-monophosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16N4O4PS</p>
+ <p>PUBCHEM: 4319</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 9533</p>
+ <p>KEGG: C01081</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ag_e" name="silver" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ag</p>
+ <p>PUBCHEM: 8935</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 9141</p>
+ <p>KEGG: C06710</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag6p__D_c" name="D-Tagatose-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 4332</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 4251</p>
+ <p>KEGG: C01097</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp19Oag_p" name="Undecaprenyl-diphosphate-O-antigene-19x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C511H850O330P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdp_c" name="CDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O11P2</p>
+ <p>PUBCHEM: 3412</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17239</p>
+ <p>KEGG: C00112</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mso3_e" name="methanesulfonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>PUBCHEM: 49991312</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 25224</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg140_p" name="Phosphatidylglycerol-ditetradecanoyl-n-C140" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H66O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_e" name="Glycerophosphoserine" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3081457</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_c" name="Glycerophosphoserine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3081457</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_p" name="L-Arginine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>PUBCHEM: 3362</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16467</p>
+ <p>KEGG: C00062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_p" name="Thiosulfate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>PUBCHEM: 3614</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16094</p>
+ <p>KEGG: C00320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg140_c" name="Phosphatidylglycerol-ditetradecanoyl-n-C140" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H66O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_e" name="L-Arginine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>PUBCHEM: 3362</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16467</p>
+ <p>KEGG: C00062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_p" name="Phosphoenolpyruvate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>PUBCHEM: 3374</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18021 44897</p>
+ <p>KEGG: C00074</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_c" name="L-Arginine" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>PUBCHEM: 3362</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16467</p>
+ <p>KEGG: C00062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trdrd_c" name="Reduced-thioredoxin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>PUBCHEM: 3635</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15967</p>
+ <p>KEGG: C00342</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_p" name="Glycerophosphoserine" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3081457</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_e" name="Thiosulfate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>PUBCHEM: 3614</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16094</p>
+ <p>KEGG: C00320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_c" name="Thiosulfate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>PUBCHEM: 3614</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16094</p>
+ <p>KEGG: C00320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dudp_c" name="dUDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O11P2</p>
+ <p>PUBCHEM: 4551</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28850</p>
+ <p>KEGG: C01346</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_msa_c" name="msa_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 3522</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17960</p>
+ <p>KEGG: C00222</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_e" name="D-Glucarate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4076</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16002</p>
+ <p>KEGG: C00818</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_c" name="Pyridoxine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>PUBCHEM: 3608</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16709</p>
+ <p>KEGG: C00314</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr2_ST_p" name="12dgr2_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_e" name="Citrate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3458</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: C00158</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdodecg_c" name="CDP-1-2-dioctadecanoylglycerol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H87N3O15P2</p>
+ <p>PUBCHEM: 3567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_c" name="Citrate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3458</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: C00158</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_p" name="D-Glucarate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4076</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16002</p>
+ <p>KEGG: C00818</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_p" name="Citrate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3458</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: C00158</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fdp_c" name="D-Fructose-1-6-bisphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O12P2</p>
+ <p>PUBCHEM: 3647</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16905</p>
+ <p>KEGG: C00354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_isetac_e" name="Isethionic-acid" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>PUBCHEM: 7545</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05123</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg181_p" name="Phosphatidylglycerol-dioctadec-11-enoyl-n-C181" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H78O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aacoa_c" name="Acetoacetyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H36N7O18P3S</p>
+ <p>PUBCHEM: 3626</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15345</p>
+ <p>KEGG: C00332</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_isetac_p" name="Isethionic-acid" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>PUBCHEM: 7545</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05123</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg181_c" name="Phosphatidylglycerol-dioctadec-11-enoyl-n-C181" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H78O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c11vaceACP_c" name="trans-3-cis-11-vacceoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H51N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odec11eg3p_p" name="1-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39O7P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ampm_c" name="4-Amino-2-methyl-5-phosphomethylpyrimidine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3O4P</p>
+ <p>PUBCHEM: 7161</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18032</p>
+ <p>KEGG: C04556</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odec11eg3p_c" name="1-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39O7P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpe180_c" name="cyclopropane-phosphatidylethanolamine-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H82N1O8P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4adcho_c" name="4-amino-4-deoxychorismate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO5</p>
+ <p>PUBCHEM: 13530</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18198 35181</p>
+ <p>KEGG: C11355</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpalmACP_c" name="R-3-hydroxypalmitoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51N2O9PRS</p>
+ <p>PUBCHEM: 7222</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04633</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_p" name="Hexadecenoate-n-C161" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp180_c" name="Phosphatidylglycerophosphate-dioctadecanoyl-n-C180" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_p" name="D-Galacturonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3627</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_c" name="Hexadecenoate-n-C161" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pphn_c" name="Prephenate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>PUBCHEM: 3553</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16666</p>
+ <p>KEGG: C00254</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_e" name="Hexadecenoate-n-C161" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_e" name="D-Galacturonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3627</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_c" name="D-Galacturonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3627</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp180_p" name="Phosphatidylglycerophosphate-dioctadecanoyl-n-C180" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_c" name="cis-Aconitate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>PUBCHEM: 3707</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 32805</p>
+ <p>KEGG: C00417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_c" name="L-Lyxose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 4676</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28480</p>
+ <p>KEGG: C01508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr181_c" name="1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H72O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_p" name="cis-Aconitate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>PUBCHEM: 3707</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 32805</p>
+ <p>KEGG: C00417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rml1p_c" name="L-Rhamnulose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O8P</p>
+ <p>PUBCHEM: 4362</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17892</p>
+ <p>KEGG: C01131</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_p" name="L-Lyxose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 4676</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28480</p>
+ <p>KEGG: C01508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr181_p" name="1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H72O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psclys_e" name="psicoselysine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__T_c" name="trans-Aconitate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>PUBCHEM: 5390</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 32806</p>
+ <p>KEGG: C02341</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urate_c" name="Urate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O3</p>
+ <p>PUBCHEM: 3657</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17775</p>
+ <p>KEGG: C00366</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psclys_p" name="psicoselysine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpofuc_c" name="GDP-4-oxo-L-fucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N5O15P2</p>
+ <p>PUBCHEM: 16760491</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_p" name="sn-Glycero-3-phospho-1-inositol" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>PUBCHEM: 4447</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18321</p>
+ <p>KEGG: C01225</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_c" name="sn-Glycero-3-phospho-1-inositol" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>PUBCHEM: 4447</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18321</p>
+ <p>KEGG: C01225</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_e" name="sn-Glycero-3-phospho-1-inositol" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>PUBCHEM: 4447</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18321</p>
+ <p>KEGG: C01225</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp18Oag_p" name="Undecaprenyl-diphosphate-O-antigene-18x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C487H810O313P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_OA_ST_p" name="OA_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_slcys_c" name="slcys_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8119</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05824</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg141_c" name="acyl-phosphatidylglycerol-n-C141" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H86O11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_e" name="Ethanol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>PUBCHEM: 3752</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16236</p>
+ <p>KEGG: C00469</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_c" name="Ethanol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>PUBCHEM: 3752</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16236</p>
+ <p>KEGG: C00469</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_p" name="pydx_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 3549</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17310</p>
+ <p>KEGG: C00250</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_e" name="Pyridoxal" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>PUBCHEM: 3549</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17310</p>
+ <p>KEGG: C00250</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_c" name="Pyridoxal" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>PUBCHEM: 3549</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17310</p>
+ <p>KEGG: C00250</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_e" name="D-Glucuronate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3491</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4178 47952</p>
+ <p>KEGG: C00191</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_c" name="D-Glucuronate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3491</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4178 47952</p>
+ <p>KEGG: C00191</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hisp_c" name="L-Histidinol-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11N3O4P</p>
+ <p>PUBCHEM: 4334</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16996</p>
+ <p>KEGG: C01100</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acg5p_c" name="N-Acetyl-L-glutamyl-5-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9NO8P</p>
+ <p>PUBCHEM: 6819</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16878</p>
+ <p>KEGG: C04133</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag1p__D_c" name="D-Tagatose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sectrna_c" name="L-Selenocysteinyl-tRNA-Sec" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOSeR</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_p" name="D-Glucuronate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3491</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4178 47952</p>
+ <p>KEGG: C00191</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amet_c" name="S-Adenosyl-L-methionine" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H23N6O5S</p>
+ <p>PUBCHEM: 3321</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15414</p>
+ <p>KEGG: C00019</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acglc__D_c" name="6-Acetyl-D-glucose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14O7</p>
+ <p>PUBCHEM: 5628</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17901</p>
+ <p>KEGG: C02655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mlthf_c" name="5-10-Methylenetetrahydrofolate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H21N7O6</p>
+ <p>PUBCHEM: 3443</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 1989</p>
+ <p>KEGG: C00143</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_u23ga_c" name="UDP-2-3-bis-3-hydroxytetradecanoyl-glucosamine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H75N3O20P2</p>
+ <p>PUBCHEM: 7239</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17787</p>
+ <p>KEGG: C04652</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2oh3d_c" name="2oh3d_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 5963</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 1254</p>
+ <p>KEGG: C03063</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_p" name="R-Glycerate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>PUBCHEM: 3557</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32398</p>
+ <p>KEGG: C00258</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_e" name="R-Glycerate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>PUBCHEM: 3557</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32398</p>
+ <p>KEGG: C00258</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_c" name="R-Glycerate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>PUBCHEM: 3557</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32398</p>
+ <p>KEGG: C00258</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn181_p" name="cardiolipin-tetraoctadec-11-enoyl-n-C181" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C81H148O17P2</p>
+ <p>PUBCHEM: 8259</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3c4mop_c" name="3-Carboxy-4-methyl-2-oxopentanoate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O5</p>
+ <p>PUBCHEM: 6905</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 1467</p>
+ <p>KEGG: C04236</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmhep1p_c" name="D-Glycero-D-manno-heptose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>PUBCHEM: 10040</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28137</p>
+ <p>KEGG: C07838</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2shchc_c" name="2-Succinyl-6-hydroxy-2-4-cyclohexadiene-1-carboxylate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H10O6</p>
+ <p>PUBCHEM: 8112</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 1277</p>
+ <p>KEGG: C05817</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_e" name="CMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 3357</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17361</p>
+ <p>KEGG: C00055</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_c" name="CMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 3357</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17361</p>
+ <p>KEGG: C00055</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dscl_c" name="dihydrosirohydrochlorin" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H41N4O16</p>
+ <p>PUBCHEM: 5480</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn161_p" name="cardiolipin-tetrahexadec-9-enoyl-n-C161" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H132O17P2</p>
+ <p>PUBCHEM: 8259</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_p" name="CMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 3357</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17361</p>
+ <p>KEGG: C00055</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo_c" name="3-Deoxy-D-manno-2-octulosonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13O8</p>
+ <p>PUBCHEM: 4413</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32817</p>
+ <p>KEGG: C01187</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_itp_c" name="ITP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O14P3</p>
+ <p>PUBCHEM: 3381</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16039</p>
+ <p>KEGG: C00081</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg180_c" name="acyl-phosphatidylglycerol-n-C180" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H116O11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_p" name="D-Fructuronate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4160</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4126</p>
+ <p>KEGG: C00905</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_e" name="D-Fructuronate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4160</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4126</p>
+ <p>KEGG: C00905</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_c" name="D-Fructuronate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4160</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4126</p>
+ <p>KEGG: C00905</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppi_c" name="Inorganic-triphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO10P3</p>
+ <p>PUBCHEM: 6138</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 18036</p>
+ <p>KEGG: C03279</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man1p_c" name="D-Mannose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03812</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps120_c" name="phosphatidylserine-didodecanoyl-n-C120" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57N1O10P1</p>
+ <p>PUBCHEM: 5698</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaleu_c" name="tRNA-Leu" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4794</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29169</p>
+ <p>KEGG: C01645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_e" name="Ferrioxamine-B" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mettrna_c" name="L-Methionyl-tRNA-Met" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NOSR</p>
+ <p>PUBCHEM: 5457</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16635</p>
+ <p>KEGG: C02430</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_c" name="Ferrioxamine-B" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_camp_c" name="cAMP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>PUBCHEM: 3854</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17489</p>
+ <p>KEGG: C00575</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_p" name="Ferrioxamine-B" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tton_e" name="tton_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 4976</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15987</p>
+ <p>KEGG: C01861</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_p" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pdx5p_c" name="Pyridoxine-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H10NO6P</p>
+ <p>PUBCHEM: 3900</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28803</p>
+ <p>KEGG: C00627</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_e" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_c" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhb_c" name="2-3-Dihydroxybenzoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O4</p>
+ <p>PUBCHEM: 3496</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18026</p>
+ <p>KEGG: C00196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgal_c" name="Undecaprenyl-diphosphate-galactose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C61H100O12P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdec9eg3p_p" name="1-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35O7P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ump_p" name="3-UMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 4567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28895</p>
+ <p>KEGG: C01368</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_p" name="cold-adapted-KDO-2-lipid-A" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdec9eg3p_c" name="1-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35O7P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_e" name="cold-adapted-KDO-2-lipid-A" compartment="e" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ump_e" name="3-UMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 4567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28895</p>
+ <p>KEGG: C01368</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fldox_c" name="flavodoxin-oxidized" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>PUBCHEM: 5805</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02869</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_c" name="cold-adapted-KDO-2-lipid-A" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_c" name="octadecenoate-n-C181" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>PUBCHEM: 3978</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16196</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_e" name="octadecenoate-n-C181" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>PUBCHEM: 3978</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16196</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_e" name="Melibiose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 7769</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28053</p>
+ <p>KEGG: C05402</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_p" name="octadecenoate-n-C181" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>PUBCHEM: 3978</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16196</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fmn_c" name="FMN" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H19N4O9P</p>
+ <p>PUBCHEM: 3361</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17621</p>
+ <p>KEGG: C00061</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdp4dh6doglc_c" name="CDP-4-dehydro-6-deoxy-D-glucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N3O15P2</p>
+ <p>PUBCHEM: 4441</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17494</p>
+ <p>KEGG: C01219</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phom_c" name="O-Phospho-L-homoserine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>PUBCHEM: 4336</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15961</p>
+ <p>KEGG: C01102</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr161_p" name="1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H64O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_p" name="Fe3" compartment="p" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 14819</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octdp_c" name="all-trans-Octaprenyl-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H65O7P2</p>
+ <p>PUBCHEM: 6831</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16275</p>
+ <p>KEGG: C04146</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icolipa_c" name="inner-core-oligosaccharide-lipid-A-E-coli" compartment="c" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C145H251N2O74P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cynt_p" name="Cyanate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>PUBCHEM: 4604</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28024</p>
+ <p>KEGG: C01417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa2_ST_p" name="pa2_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_c" name="Fe3" compartment="c" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 14819</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr161_c" name="1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H64O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_e" name="Fe3" compartment="e" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 14819</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp2Oag_p" name="Undecaprenyl-diphosphate-O-antigene-2x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C103H170O41P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cynt_e" name="Cyanate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>PUBCHEM: 4604</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28024</p>
+ <p>KEGG: C01417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_e" name="meso-2-6-Diaminoheptanedioate" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>PUBCHEM: 3949</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16488 30308</p>
+ <p>KEGG: C00680</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_p" name="D-Gluconate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 3556</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 33198</p>
+ <p>KEGG: C00257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_c" name="meso-2-6-Diaminoheptanedioate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>PUBCHEM: 3949</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16488 30308</p>
+ <p>KEGG: C00680</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_p" name="23dhbzs3_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_c" name="udcpo4_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_e" name="udcpo4_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_c" name="D-Gluconate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 3556</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 33198</p>
+ <p>KEGG: C00257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_p" name="N-Acetyl-D-glucosamine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3440</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17411</p>
+ <p>KEGG: C00140</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_e" name="D-Gluconate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 3556</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 33198</p>
+ <p>KEGG: C00257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_p" name="meso-2-6-Diaminoheptanedioate" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>PUBCHEM: 3949</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16488 30308</p>
+ <p>KEGG: C00680</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_p" name="udcpo4_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_c" name="23dhbzs3_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_e" name="23dhbzs3_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaala_c" name="tRNA-Ala" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4784</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29170</p>
+ <p>KEGG: C01635</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crncoa_c" name="L-Carnitinyl-CoA" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O18P3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_p" name="Indole" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>PUBCHEM: 3747</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16881</p>
+ <p>KEGG: C00463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocvac11eACP_c" name="3-oxo-cis-vacc-11-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H51N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apolpp_p" name="apolpp_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oodcoa_c" name="3-Oxooctadecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O18P3S</p>
+ <p>PUBCHEM: 47205524</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16216</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_e" name="Indole" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>PUBCHEM: 3747</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16881</p>
+ <p>KEGG: C00463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23doguln_c" name="2-3-Dioxo-L-gulonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O7</p>
+ <p>PUBCHEM: 7176</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15622</p>
+ <p>KEGG: C04575</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_c" name="Indole" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>PUBCHEM: 3747</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16881</p>
+ <p>KEGG: C00463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_c" name="Chloride" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>PUBCHEM: 3415</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17996</p>
+ <p>KEGG: C00115</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucglu_c" name="N2-Succinyl-L-glutamate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO7</p>
+ <p>PUBCHEM: 8219</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 48957</p>
+ <p>KEGG: C05931</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hoctaACP_c" name="R-3-Hydroxyoctadecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H55N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_c" name="L-Histidine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>PUBCHEM: 3435</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15971</p>
+ <p>KEGG: C00135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mahmp_c" name="2-Methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3O7P2</p>
+ <p>PUBCHEM: 7322</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16629</p>
+ <p>KEGG: C04752</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_p" name="IMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>PUBCHEM: 3430</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17202</p>
+ <p>KEGG: C00130</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbard_p" name="periplasmic-protein-disulfide-isomerase-I-reduced" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phphhlipa_c" name="phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" charge="-10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C131H230N2O63P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -10</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f1p_c" name="D-Fructose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 5887</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02976</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhna_c" name="1-4-Dihydroxy-2-naphthoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H7O4</p>
+ <p>PUBCHEM: 6435</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18094</p>
+ <p>KEGG: C03657</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_c" name="IMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>PUBCHEM: 3430</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17202</p>
+ <p>KEGG: C00130</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_c" name="L-Lysine" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>PUBCHEM: 3349</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18019</p>
+ <p>KEGG: C00047</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_e" name="Guanosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>PUBCHEM: 3677</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16750</p>
+ <p>KEGG: C00387</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_c" name="ferroxamine" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>PUBCHEM: 9799</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C07597</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe181_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>PUBCHEM: 7069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_e" name="ferroxamine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>PUBCHEM: 9799</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C07597</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_c" name="Guanosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>PUBCHEM: 3677</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16750</p>
+ <p>KEGG: C00387</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_u3hga_c" name="UDP-3-O-3-hydroxytetradecanoyl-D-glucosamine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H50N3O18P2</p>
+ <p>PUBCHEM: 8294</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 27392</p>
+ <p>KEGG: C06022</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_p" name="Guanosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>PUBCHEM: 3677</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16750</p>
+ <p>KEGG: C00387</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c5ddeceACP_c" name="trans-3-cis-5-dodecenoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H39N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hoctACP_c" name="R-3-Hydroxyoctanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35N2O9PRS</p>
+ <p>PUBCHEM: 7210</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04620</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pram_c" name="5-Phospho-beta-D-ribosylamine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO7P</p>
+ <p>PUBCHEM: 5988</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 37737</p>
+ <p>KEGG: C03090</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_e" name="NMN" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>PUBCHEM: 3741</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16171</p>
+ <p>KEGG: C00455</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_c" name="NMN" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>PUBCHEM: 3741</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16171</p>
+ <p>KEGG: C00455</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpacet_c" name="3-4-Dihydroxyphenylacetate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O4</p>
+ <p>PUBCHEM: 4388</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17612</p>
+ <p>KEGG: C01161</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpp_c" name="Undecaprenyl-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O4P</p>
+ <p>PUBCHEM: 3641</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16141</p>
+ <p>KEGG: C00348</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_p" name="NMN" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>PUBCHEM: 3741</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16171</p>
+ <p>KEGG: C00455</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anth_c" name="Anthranilate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>PUBCHEM: 3408</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30754</p>
+ <p>KEGG: C00108</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag__D_p" name="D-Tagatose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4053</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4249</p>
+ <p>KEGG: C00795</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacmamu_c" name="UDP-N-acetyl-D-mannosaminouronate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H22N3O18P2</p>
+ <p>PUBCHEM: 8481</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28581</p>
+ <p>KEGG: C06240</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tma_p" name="trimethylamine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>PUBCHEM: 3844</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18139</p>
+ <p>KEGG: C00565</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyam5p_c" name="Pyridoxamine-5-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N2O5P</p>
+ <p>PUBCHEM: 3919</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18335</p>
+ <p>KEGG: C00647</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_suchms_c" name="O-Succinyl-L-homoserine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO6</p>
+ <p>PUBCHEM: 4349</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16160</p>
+ <p>KEGG: C01118</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prpp_c" name="5-Phospho-alpha-D-ribose-1-diphosphate" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O14P3</p>
+ <p>PUBCHEM: 3419</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 17111</p>
+ <p>KEGG: C00119</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag__D_e" name="D-Tagatose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4053</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4249</p>
+ <p>KEGG: C00795</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tma_e" name="trimethylamine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>PUBCHEM: 3844</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18139</p>
+ <p>KEGG: C00565</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adphep__LD_c" name="ADP-L-glycero-D-manno-heptose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N5O16P2</p>
+ <p>PUBCHEM: 8634</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15915</p>
+ <p>KEGG: C06398</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnathr_c" name="tRNA-Thr" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4800</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29180</p>
+ <p>KEGG: C01651</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ig3p_c" name="C--3-Indolyl-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO6P</p>
+ <p>PUBCHEM: 6317</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18299</p>
+ <p>KEGG: C03506</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_e" name="Molybdate-MoO4" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8475</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 36264</p>
+ <p>KEGG: C06232</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ooctdACP_c" name="3-Oxooctadecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xu5p__L_c" name="L-Xylulose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 6148</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16593</p>
+ <p>KEGG: C03291</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_c" name="Molybdate-MoO4" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8475</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 36264</p>
+ <p>KEGG: C06232</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa180_c" name="1-2-dioctadecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H75O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__D_p" name="D-Cysteine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 4051</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16375</p>
+ <p>KEGG: C00793</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2obut_c" name="2-Oxobutanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>PUBCHEM: 3409</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30831</p>
+ <p>KEGG: C00109</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_p" name="Hexadecanoate-n-C160" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa180_p" name="1-2-dioctadecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H75O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_p" name="Molybdate-MoO4" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8475</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 36264</p>
+ <p>KEGG: C06232</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_e" name="Hexadecanoate-n-C160" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_c" name="Hexadecanoate-n-C160" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_c" name="L-methionine-R-sulfoxide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 847</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__D_e" name="D-Cysteine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 4051</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16375</p>
+ <p>KEGG: C00793</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4per_c" name="4-Phospho-D-erythronate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6O8P</p>
+ <p>PUBCHEM: 6224</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 49003</p>
+ <p>KEGG: C03393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa161_p" name="1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H63O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpLa4n_c" name="uridine-5--diphospho-beta-4-deoxy-4-amino-L-arabinose" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N3O15P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_all__D_p" name="D-Allose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4657</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4093</p>
+ <p>KEGG: C01487</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_e" name="L-methionine-R-sulfoxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 847</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmao_p" name="Trimethylamine-N-oxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>PUBCHEM: 4338</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15724</p>
+ <p>KEGG: C01104</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa161_c" name="1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H63O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nad_c" name="Nicotinamide-adenine-dinucleotide" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H26N7O14P2</p>
+ <p>PUBCHEM: 3305</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15846</p>
+ <p>KEGG: C00003</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_all__D_e" name="D-Allose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4657</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4093</p>
+ <p>KEGG: C01487</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmao_e" name="Trimethylamine-N-oxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>PUBCHEM: 4338</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15724</p>
+ <p>KEGG: C01104</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_e" name="Ferrichrome-minus-Fe-III" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_c" name="Ferrichrome-minus-Fe-III" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmcoa__S_c" name="S-Methylmalonyl-CoA" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>PUBCHEM: 3952</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 15466</p>
+ <p>KEGG: C00683</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_p" name="Maltopentaose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>PUBCHEM: 124005??3611</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28057</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_au_p" name="Gold-Au" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29287</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_p" name="Ferrichrome-minus-Fe-III" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_c" name="Maltopentaose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>PUBCHEM: 124005??3611</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28057</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_e" name="Maltopentaose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>PUBCHEM: 124005??3611</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28057</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_p" name="R-Propane-1-2-diol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5836</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28972</p>
+ <p>KEGG: C02912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe140_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>PUBCHEM: 7069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_c" name="D-Glucosamine-6-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3645</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15873</p>
+ <p>KEGG: C00352</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_e" name="Ferrioxamine-E" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_e" name="D-Glucosamine-6-phosphate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3645</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15873</p>
+ <p>KEGG: C00352</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_c" name="Ferrioxamine-E" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_b2coa_c" name="Crotonoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H36N7O17P3S</p>
+ <p>PUBCHEM: 4133</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00877</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_p" name="D-Glucosamine-6-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3645</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15873</p>
+ <p>KEGG: C00352</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chor_c" name="chorismate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>PUBCHEM: 3550</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17333</p>
+ <p>KEGG: C00251</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abz_e" name="4-Aminobenzoate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>PUBCHEM: 3847</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30753</p>
+ <p>KEGG: C00568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abz_c" name="4-Aminobenzoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>PUBCHEM: 3847</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30753</p>
+ <p>KEGG: C00568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocblp_c" name="Adenosylcobalamin-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H99CoN18O20P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C00194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_td2coa_c" name="trans-Tetradec-2-enoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O17P3S</p>
+ <p>PUBCHEM: 7660</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27721</p>
+ <p>KEGG: C05273</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbcrd_p" name="protein-disulfide-isomerase-II-reduced" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3omrsACP_c" name="3-Oxotetradecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O9PRS</p>
+ <p>PUBCHEM: 8054</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05759</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe140_c" name="phosphatidylethanolamine-ditetradecanoyl-n-C140" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H66N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_c" name="N-Acetyl-D-mannosamine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3918</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17122</p>
+ <p>KEGG: C00645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_e" name="N-Acetyl-D-mannosamine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3918</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17122</p>
+ <p>KEGG: C00645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmcoa__R_c" name="R-Methylmalonyl-CoA" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>PUBCHEM: 4435</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 15465</p>
+ <p>KEGG: C01213</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe140_p" name="phosphatidylethanolamine-ditetradecanoyl-n-C140" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H66N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg141_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_p" name="N-Acetyl-D-mannosamine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3918</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17122</p>
+ <p>KEGG: C00645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frulys_e" name="fructoselysine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 47205784</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aspsa_c" name="L-Aspartate-4-semialdehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7NO3</p>
+ <p>PUBCHEM: 3730</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 13086 18051</p>
+ <p>KEGG: C00441</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp17Oag_p" name="Undecaprenyl-diphosphate-O-antigene-17x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C463H770O296P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_Sfglutth_c" name="S-Formylglutathione" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16N3O7S</p>
+ <p>PUBCHEM: 4274</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16225</p>
+ <p>KEGG: C01031</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdec7eg3p_c" name="1-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdec7eg3p_p" name="1-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_p" name="pydxn_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 3608</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16709</p>
+ <p>KEGG: C00314</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe180_p" name="phosphatidylethanolamine-dioctadecanoyl-n-C180" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H82N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_e" name="Pyridoxine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>PUBCHEM: 3608</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16709</p>
+ <p>KEGG: C00314</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_p" name="Choline" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>PUBCHEM: 3414</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15354</p>
+ <p>KEGG: C00114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3odecACP_c" name="3-Oxodecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O9PRS</p>
+ <p>PUBCHEM: 8048</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05753</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpLa4o_c" name="UDP-4-keto-pyranose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H18N2O16P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_c" name="Sodium" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>PUBCHEM: 4541</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29101</p>
+ <p>KEGG: C01330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_e" name="Sodium" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>PUBCHEM: 4541</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29101</p>
+ <p>KEGG: C01330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aact_c" name="Aminoacetone" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8NO</p>
+ <p>PUBCHEM: 5001</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 17906</p>
+ <p>KEGG: C01888</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_c" name="Choline" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>PUBCHEM: 3414</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15354</p>
+ <p>KEGG: C00114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_e" name="Choline" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>PUBCHEM: 3414</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15354</p>
+ <p>KEGG: C00114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_p" name="Sodium" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>PUBCHEM: 4541</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29101</p>
+ <p>KEGG: C01330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ugmda_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H61N9O28P2</p>
+ <p>PUBCHEM: 7434</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04882</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dnad_c" name="Deamino-NAD" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H24N6O15P2</p>
+ <p>PUBCHEM: 4114</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18304</p>
+ <p>KEGG: C00857</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_c" name="dTMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>PUBCHEM: 3655</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17013</p>
+ <p>KEGG: C00364</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_e" name="dTMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>PUBCHEM: 3655</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17013</p>
+ <p>KEGG: C00364</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dd2coa_c" name="trans-Dodec-2-enoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H52N7O17P3S</p>
+ <p>PUBCHEM: 6094</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15471</p>
+ <p>KEGG: C03221</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_e" name="2-Deoxy-D-ribose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 4927</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28816</p>
+ <p>KEGG: C01801</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_c" name="2-Deoxy-D-ribose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 4927</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28816</p>
+ <p>KEGG: C01801</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_p" name="dTMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>PUBCHEM: 3655</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17013</p>
+ <p>KEGG: C00364</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dadp_c" name="dADP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O9P2</p>
+ <p>PUBCHEM: 3506</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16174</p>
+ <p>KEGG: C00206</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein3px4p_p" name="two-disacharide-linked-murein-units-tripeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H107N13O38</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_p" name="2-Deoxy-D-ribose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 4927</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28816</p>
+ <p>KEGG: C01801</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_p" name="Agmatine" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>PUBCHEM: 3479</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17431</p>
+ <p>KEGG: C00179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3opalmACP_c" name="3-Oxohexadecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O9PRS</p>
+ <p>PUBCHEM: 8057</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_c" name="Agmatine" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>PUBCHEM: 3479</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17431</p>
+ <p>KEGG: C00179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_e" name="Agmatine" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>PUBCHEM: 3479</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17431</p>
+ <p>KEGG: C00179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hlipa_c" name="heptosyl-kdo2-lipidA" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C117H208N2O45P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_p" name="L-Xylulose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17399</p>
+ <p>KEGG: C00312</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa181_p" name="1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H71O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_c" name="L-Xylulose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17399</p>
+ <p>KEGG: C00312</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_e" name="L-Xylulose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17399</p>
+ <p>KEGG: C00312</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa181_c" name="1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H71O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_e" name="coprogen" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ipdp_c" name="Isopentenyl-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P2</p>
+ <p>PUBCHEM: 3429</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16584</p>
+ <p>KEGG: C00129</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frulys_p" name="fructoselysine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 47205784</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrtrna_c" name="L-Tyrosyl-tRNA-Tyr" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO2R</p>
+ <p>PUBCHEM: 5781</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29161</p>
+ <p>KEGG: C02839</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_p" name="L-Valine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3483</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16414</p>
+ <p>KEGG: C00183</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbdox_c" name="fused-thioldisulfide-interchange-protein-oxidized" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_e4p_c" name="D-Erythrose-4-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O7P</p>
+ <p>PUBCHEM: 3574</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 48153</p>
+ <p>KEGG: C00279</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oddecACP_c" name="3-Oxododecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O9PRS</p>
+ <p>PUBCHEM: 8051</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05756</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_e" name="L-Valine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3483</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16414</p>
+ <p>KEGG: C00183</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_e" name="Adenosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3512</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16335</p>
+ <p>KEGG: C00212</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_c" name="L-Valine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3483</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16414</p>
+ <p>KEGG: C00183</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_c" name="coprogen" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ditp_c" name="dITP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O13P3</p>
+ <p>PUBCHEM: 4550</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01345</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3otdcoa_c" name="3-Oxotetradecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O18P3S</p>
+ <p>PUBCHEM: 7648</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28726</p>
+ <p>KEGG: C05261</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__LL_c" name="LL-2-6-Diaminoheptanedioate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>PUBCHEM: 3935</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16026</p>
+ <p>KEGG: C00666</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__L_e" name="L-Galactonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 47205248</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15930</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_micit_c" name="methylisocitrate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O7</p>
+ <p>PUBCHEM: 7191</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 15607</p>
+ <p>KEGG: C04593</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_accoa_c" name="Acetyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H34N7O17P3S</p>
+ <p>PUBCHEM: 3326</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15351</p>
+ <p>KEGG: C00024</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__L_p" name="L-Galactonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 47205248</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15930</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hco3_c" name="Bicarbonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHO3</p>
+ <p>PUBCHEM: 3583</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17544</p>
+ <p>KEGG: C00288</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_p" name="Superoxide-anion" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3971</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18421</p>
+ <p>KEGG: C00704</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctbt_p" name="crotonobetaine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13NO2</p>
+ <p>PUBCHEM: 6803</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1774</p>
+ <p>KEGG: C04114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_d5kgp_c" name="d5kgp_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 9110</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06893</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3php_c" name="3-Phosphohydroxypyruvate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O7P</p>
+ <p>PUBCHEM: 6103</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30933</p>
+ <p>KEGG: C03232</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_c" name="Superoxide-anion" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3971</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18421</p>
+ <p>KEGG: C00704</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctbt_c" name="crotonobetaine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13NO2</p>
+ <p>PUBCHEM: 6803</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1774</p>
+ <p>KEGG: C04114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucorn_c" name="N2-Succinyl-L-ornithine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15N2O5</p>
+ <p>PUBCHEM: 6244</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 27574</p>
+ <p>KEGG: C03415</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdhdecg_c" name="CDP-1-2-dihexadecanoylglycerol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H79N3O15P2</p>
+ <p>PUBCHEM: 3567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rml_c" name="L-Rhamnulose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 4118</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17897</p>
+ <p>KEGG: C00861</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg140_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdecg3p_c" name="2-tetradecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H34O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdhdec9eg_c" name="CDP-1-2-dihexadec-9-enoylglycerol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H75N3O15P2</p>
+ <p>PUBCHEM: 3567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg140_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmgth_c" name="hydroxymethylglutathione" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18N3O7S</p>
+ <p>PUBCHEM: 1082</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_p" name="N-Acetylneuraminate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>PUBCHEM: 3568</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17012</p>
+ <p>KEGG: C00270</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butso3_e" name="butanesulfonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fadh2_c" name="Flavin-adenine-dinucleotide-reduced" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H33N9O15P2</p>
+ <p>PUBCHEM: 4556</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17877</p>
+ <p>KEGG: C01352</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_e" name="N-Acetylneuraminate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>PUBCHEM: 3568</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17012</p>
+ <p>KEGG: C00270</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hpyr_c" name="Hydroxypyruvate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O4</p>
+ <p>PUBCHEM: 3468</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30841</p>
+ <p>KEGG: C00168</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butso3_p" name="butanesulfonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_e" name="Cadmium" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>PUBCHEM: 4601</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 48775</p>
+ <p>KEGG: C01413</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fmettrna_c" name="N-Formylmethionyl-tRNA" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9NO2SR</p>
+ <p>PUBCHEM: 6151</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17119</p>
+ <p>KEGG: C03294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_c" name="Cadmium" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>PUBCHEM: 4601</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 48775</p>
+ <p>KEGG: C01413</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cob2nda_c" name="Cob-II-yrinate-a-c-diamide" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H56CoN6O12</p>
+ <p>PUBCHEM: 8735</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27937</p>
+ <p>KEGG: C06504</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg180_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_p" name="Cadmium" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>PUBCHEM: 4601</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 48775</p>
+ <p>KEGG: C01413</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_paps_c" name="3-Phosphoadenylyl-sulfate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O13P2S</p>
+ <p>PUBCHEM: 3355</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 17980</p>
+ <p>KEGG: C00053</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpg180_c" name="cyclopropane-phosphatidylglycerol-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H82O10P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg180_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdec9eg3p_c" name="2-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H36O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein3p3p_p" name="two-linked-disacharide-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H104N12O38</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uppg3_c" name="Uroporphyrinogen-III" compartment="c" charge="-8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H36N4O16</p>
+ <p>PUBCHEM: 4293</p>
+ <p>CHARGE: -8</p>
+ <p>CHEBI: 15437</p>
+ <p>KEGG: C01051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbi_c" name="Adenosyl-cobinamide" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C58H84CoN16O11</p>
+ <p>PUBCHEM: 8739</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 2480</p>
+ <p>KEGG: C06508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdec9eg3p_p" name="2-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H36O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtspmd_c" name="Glutathionylspermidine" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36N6O5S</p>
+ <p>PUBCHEM: 8032</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 16613</p>
+ <p>KEGG: C05730</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpe160_c" name="cyclopropane-phosphatidylethanolamine-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H74N1O8P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acetol_c" name="Acetol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>PUBCHEM: 7630</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 27957</p>
+ <p>KEGG: C05235</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gcald_c" name="Glycolaldehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O2</p>
+ <p>PUBCHEM: 3564</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17071</p>
+ <p>KEGG: C00266</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mso3_p" name="methanesulfonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>PUBCHEM: 49991312</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 25224</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaasn_c" name="tRNA-Asn" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17O10PR2</p>
+ <p>PUBCHEM: 4786</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29172</p>
+ <p>KEGG: C01637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tton_p" name="tton_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 4976</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15987</p>
+ <p>KEGG: C01861</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe141_p" name="phosphatidylethanolamine-ditetradec-7-enoyl-n-C141" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H62N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe161_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phetrna_c" name="L-Phenylalanyl-tRNA-Phe" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NOR</p>
+ <p>PUBCHEM: 6321</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29153</p>
+ <p>KEGG: C03511</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe161_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe141_c" name="phosphatidylethanolamine-ditetradec-7-enoyl-n-C141" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H62N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcacoa_c" name="Decanoyl-CoA-n-C100CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H50N7O17P3S</p>
+ <p>PUBCHEM: 7661</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28493</p>
+ <p>KEGG: C05274</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_p" name="L-Histidine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>PUBCHEM: 3435</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15971</p>
+ <p>KEGG: C00135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpddman_c" name="GDP-4-dehydro-6-deoxy-D-mannose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N5O15P2</p>
+ <p>PUBCHEM: 4444</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16955</p>
+ <p>KEGG: C01222</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mtr_c" name="5-Methylthio-D-ribose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O4S</p>
+ <p>PUBCHEM: 5987</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16895</p>
+ <p>KEGG: C03089</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hba_c" name="4-Hydroxy-benzyl-alcohol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O2</p>
+ <p>PUBCHEM: 125??3480</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 30746</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ippm_c" name="2-Isopropylmaleate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O4</p>
+ <p>PUBCHEM: 5611</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17275</p>
+ <p>KEGG: C02631</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__D_c" name="D-Xylulose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3604</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17140</p>
+ <p>KEGG: C00310</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaasp_c" name="tRNA-Asp" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4787</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29186</p>
+ <p>KEGG: C01638</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp6Oag_p" name="Undecaprenyl-diphosphate-O-antigene-6x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C199H330O109P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_e" name="H2" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>PUBCHEM: 3577</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18276</p>
+ <p>KEGG: C00282</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpgr_c" name="udcpgr_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_c" name="H2" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>PUBCHEM: 3577</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18276</p>
+ <p>KEGG: C00282</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_c" name="D-Glucarate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4076</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16002</p>
+ <p>KEGG: C00818</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrtrna_c" name="L-Threonyl-tRNA-Thr" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO2R</p>
+ <p>PUBCHEM: 5901</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29163</p>
+ <p>KEGG: C02992</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_e" name="Maltotetraose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>PUBCHEM: 5141</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps160_c" name="phosphatidylserine-dihexadecanoyl-n-C160" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73N1O10P1</p>
+ <p>PUBCHEM: 5698</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_p" name="Zinc" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>PUBCHEM: 3340</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29105</p>
+ <p>KEGG: C00038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_c" name="Maltotetraose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>PUBCHEM: 5141</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp11Oag_p" name="Undecaprenyl-diphosphate-O-antigene-11x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C319H530O194P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_p" name="H2" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>PUBCHEM: 3577</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18276</p>
+ <p>KEGG: C00282</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_e" name="Superoxide-anion" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3971</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18421</p>
+ <p>KEGG: C00704</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_p" name="Maltotetraose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>PUBCHEM: 5141</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_c" name="Zinc" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>PUBCHEM: 3340</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29105</p>
+ <p>KEGG: C00038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_c" name="L-Cysteine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 3397</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17561</p>
+ <p>KEGG: C00097</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca2und_p" name="enterobacterial-common-antigen-x2-undecaprenyl-diphosphate" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C103H162N6O37P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmhep17bp_c" name="D-Glycero-D-manno-heptose-1-7-bisphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12O13P2</p>
+ <p>PUBCHEM: 13642</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11472</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_e" name="tungstate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>PUBCHEM: 26697048</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 46502</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_p" name="L-Threonine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3488</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16857</p>
+ <p>KEGG: C00188</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpppn_e" name="3-3-hydroxy-phenyl-propionate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_c" name="tungstate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>PUBCHEM: 26697048</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 46502</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mthgxl_c" name="Methylglyoxal" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O2</p>
+ <p>PUBCHEM: 3827</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17158</p>
+ <p>KEGG: C00546</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpgrm_c" name="udcpgrm_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 23061145</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_c" name="L-Threonine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3488</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16857</p>
+ <p>KEGG: C00188</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_e" name="L-Threonine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3488</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16857</p>
+ <p>KEGG: C00188</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_p" name="tungstate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>PUBCHEM: 26697048</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 46502</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpppn_p" name="3-3-hydroxy-phenyl-propionate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_e" name="4-Aminobutanoate" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>PUBCHEM: 3628</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16865</p>
+ <p>KEGG: C00334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_c" name="4-Aminobutanoate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>PUBCHEM: 3628</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16865</p>
+ <p>KEGG: C00334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_25dkglcn_c" name="2-5-diketo-D-gluconate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O7</p>
+ <p>PUBCHEM: 5731</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18281</p>
+ <p>KEGG: C02780</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe120_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_p" name="L-Glutamine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>PUBCHEM: 3364</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18050</p>
+ <p>KEGG: C00064</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_p" name="4-Aminobutanoate" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>PUBCHEM: 3628</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16865</p>
+ <p>KEGG: C00334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p3p_p" name="two-linked-disacharide-pentapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H114N14O40</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_e" name="L-Glutamine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>PUBCHEM: 3364</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18050</p>
+ <p>KEGG: C00064</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imacp_c" name="3-Imidazol-4-yl-2-oxopropyl-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7N2O5P</p>
+ <p>PUBCHEM: 4486</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16426</p>
+ <p>KEGG: C01267</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_c" name="L-Glutamine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>PUBCHEM: 3364</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18050</p>
+ <p>KEGG: C00064</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp161_c" name="Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69O13P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ddhb_c" name="2-3-Dihydro-2-3-dihydroxybenzoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O4</p>
+ <p>PUBCHEM: 6852</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15941</p>
+ <p>KEGG: C04171</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_p" name="UDPglucose" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3331</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18066</p>
+ <p>KEGG: C00029</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcamp_c" name="N6-1-2-Dicarboxyethyl-AMP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H14N5O11P</p>
+ <p>PUBCHEM: 6543</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15919</p>
+ <p>KEGG: C03794</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_e" name="UDPglucose" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3331</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18066</p>
+ <p>KEGG: C00029</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_c" name="UDPglucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3331</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18066</p>
+ <p>KEGG: C00029</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_p" name="CO2" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>PUBCHEM: 3313</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16526</p>
+ <p>KEGG: C00011</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipidX_c" name="2-3-Bis-3-hydroxytetradecanoyl-beta-D-glucosaminyl-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H64NO12P</p>
+ <p>PUBCHEM: 7385</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16942</p>
+ <p>KEGG: C04824</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp16Oag_p" name="Undecaprenyl-diphosphate-O-antigene-16x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C439H730O279P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_c" name="CO2" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>PUBCHEM: 3313</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16526</p>
+ <p>KEGG: C00011</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_e" name="CO2" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>PUBCHEM: 3313</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16526</p>
+ <p>KEGG: C00011</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mql8_c" name="Menaquinol-8" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C51H74O2</p>
+ <p>PUBCHEM: 8114</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05819</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_p" name="AMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3322</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16027</p>
+ <p>KEGG: C00020</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ohcoa_c" name="3-Oxohexanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H40N7O18P3S</p>
+ <p>PUBCHEM: 7656</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27648</p>
+ <p>KEGG: C05269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dhglcn_c" name="2-Dehydro-D-gluconate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3902</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16808</p>
+ <p>KEGG: C00629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glx_c" name="Glyoxylate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H1O3</p>
+ <p>PUBCHEM: 3350</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16891</p>
+ <p>KEGG: C00048</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hh24dd_c" name="2-Hydroxyhepta-2-4-dienedioate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6O5</p>
+ <p>PUBCHEM: 7923</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05600</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdecg3p_p" name="2-tetradecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H34O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_c" name="L-Carnitine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>PUBCHEM: 3612</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16347</p>
+ <p>KEGG: C00318</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3amp_e" name="3-AMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 4566</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28931</p>
+ <p>KEGG: C01367</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_e" name="L-Carnitine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>PUBCHEM: 3612</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16347</p>
+ <p>KEGG: C00318</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdolipid4_c" name="KDO-lipid-IV-A" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C76H137N2O30P2</p>
+ <p>PUBCHEM: 8296</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06024</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp140_c" name="Phosphatidylglycerophosphate-ditetradecanoyl-n-C140" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3amp_p" name="3-AMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 4566</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28931</p>
+ <p>KEGG: C01367</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_p" name="L-Carnitine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>PUBCHEM: 3612</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16347</p>
+ <p>KEGG: C00318</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp140_p" name="Phosphatidylglycerophosphate-ditetradecanoyl-n-C140" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmbzid_c" name="5-6-Dimethylbenzimidazole" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2</p>
+ <p>PUBCHEM: 6009</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15890</p>
+ <p>KEGG: C03114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_grxrd_c" name="glutaredoxin-reduced" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_e" name="AMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3322</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16027</p>
+ <p>KEGG: C00020</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_c" name="sn-Glycero-3-phosphocholine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>PUBCHEM: 3939</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16870</p>
+ <p>KEGG: C00670</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prfp_c" name="1-5-Phosphoribosyl-5-5-phosphoribosylamino-methylideneaminoimidazole-4-carboxamide" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O15P2</p>
+ <p>PUBCHEM: 7447</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 18302</p>
+ <p>KEGG: C04896</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn__D_p" name="D-Carnitine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>PUBCHEM: 3770</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 3424</p>
+ <p>KEGG: C00487</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc2p_e" name="Glycerol-2-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 5889</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17270</p>
+ <p>KEGG: C02979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oxur_c" name="Oxalureate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3N2O4</p>
+ <p>PUBCHEM: 4060</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16582</p>
+ <p>KEGG: C00802</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn__D_c" name="D-Carnitine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>PUBCHEM: 3770</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 3424</p>
+ <p>KEGG: C00487</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2cpr5p_c" name="1-2-Carboxyphenylamino-1-deoxy-D-ribulose-5-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H13NO9P</p>
+ <p>PUBCHEM: 4520</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 29112</p>
+ <p>KEGG: C01302</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_p" name="Succinate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>PUBCHEM: 3344</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15741</p>
+ <p>KEGG: C00042</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp141_p" name="Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_diglyceride_prolpp_c" name="diglyceride_prolpp_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_e" name="Thymine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>PUBCHEM: 3478</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17821</p>
+ <p>KEGG: C00178</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_c" name="dUMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>PUBCHEM: 3656</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17622</p>
+ <p>KEGG: C00365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp141_c" name="Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_c" name="Succinate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>PUBCHEM: 3344</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15741</p>
+ <p>KEGG: C00042</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_e" name="Succinate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>PUBCHEM: 3344</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15741</p>
+ <p>KEGG: C00042</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnagln_c" name="tRNA-Gln" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4789</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29168</p>
+ <p>KEGG: C01640</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ahcys_c" name="S-Adenosyl-L-homocysteine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H20N6O5S</p>
+ <p>PUBCHEM: 3323</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16680</p>
+ <p>KEGG: C00021</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_p" name="dUMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>PUBCHEM: 3656</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17622</p>
+ <p>KEGG: C00365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oocoa_c" name="3-Oxooctanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N7O18P3S</p>
+ <p>PUBCHEM: 7654</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28264</p>
+ <p>KEGG: C05267</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_c" name="N-Acetylneuraminate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>PUBCHEM: 3568</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17012</p>
+ <p>KEGG: C00270</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_e" name="D-Mannose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3459</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4208</p>
+ <p>KEGG: C00159</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_histrna_c" name="L-Histidyl-tRNA-His" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3OR</p>
+ <p>PUBCHEM: 5897</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29155</p>
+ <p>KEGG: C02988</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_c" name="D-Mannose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3459</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4208</p>
+ <p>KEGG: C00159</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_p" name="D-Mannose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3459</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4208</p>
+ <p>KEGG: C00159</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rbl__L_c" name="L-Ribulose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3791</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16880</p>
+ <p>KEGG: C00508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps180_c" name="phosphatidylserine-dioctadecanoyl-n-C180" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81N1O10P1</p>
+ <p>PUBCHEM: 5698</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_od2coa_c" name="trans-Octadec-2-enoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O17P3S</p>
+ <p>PUBCHEM: 47205526</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16218</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nadph_c" name="Nicotinamide-adenine-dinucleotide-phosphate--reduced" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H26N7O17P3</p>
+ <p>PUBCHEM: 3307</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16474</p>
+ <p>KEGG: C00005</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hhdcoa_c" name="S-3-Hydroxyhexadecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H62N7O18P3S</p>
+ <p>PUBCHEM: 7645</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27402</p>
+ <p>KEGG: C05258</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_p" name="potassium" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>PUBCHEM: 3537</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29103</p>
+ <p>KEGG: C00238</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_p" name="4-Hydroxyphenylacetaldehyde" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>PUBCHEM: 6521</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15621</p>
+ <p>KEGG: C03765</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxcoa_c" name="Hexanoyl-CoA-n-C60CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N7O17P3S</p>
+ <p>PUBCHEM: 7657</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27540</p>
+ <p>KEGG: C05270</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_c" name="potassium" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>PUBCHEM: 3537</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29103</p>
+ <p>KEGG: C00238</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_e" name="potassium" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>PUBCHEM: 3537</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29103</p>
+ <p>KEGG: C00238</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prolpp_c" name="prolpp_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_e" name="4-Hydroxyphenylacetaldehyde" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>PUBCHEM: 6521</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15621</p>
+ <p>KEGG: C03765</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__5_c" name="5-Deoxyadenosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>PUBCHEM: 7603</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17319</p>
+ <p>KEGG: C05198</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipaOA_e" name="colipaOA_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_c" name="Nitrate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>PUBCHEM: 3543</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 48107</p>
+ <p>KEGG: C00244</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aicar_c" name="5-Amino-1-5-Phospho-D-ribosyl-imidazole-4-carboxamide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N4O8P</p>
+ <p>PUBCHEM: 7258</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18406</p>
+ <p>KEGG: C04677</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dms_e" name="Dimethyl-sulfide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>PUBCHEM: 3859</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17437</p>
+ <p>KEGG: C00580</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_p" name="Nitrate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>PUBCHEM: 3543</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 48107</p>
+ <p>KEGG: C00244</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dms_p" name="Dimethyl-sulfide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>PUBCHEM: 3859</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17437</p>
+ <p>KEGG: C00580</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaval_c" name="tRNA-Val" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4802</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29183</p>
+ <p>KEGG: C01653</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3htdcoa_c" name="S-3-Hydroxytetradecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H58N7O18P3S</p>
+ <p>PUBCHEM: 7647</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27466</p>
+ <p>KEGG: C05260</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2h5cmmusa_c" name="2-Hydroxy-5-carboxymethylmuconate-Semialdehyde" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H6O6</p>
+ <p>PUBCHEM: 7231</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17142</p>
+ <p>KEGG: C04642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_e" name="3-Phospho-D-glycerate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3497</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17794</p>
+ <p>KEGG: C00197</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3497</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17794</p>
+ <p>KEGG: C00197</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cump_e" name="2-3-Cyclic-UMP" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>PUBCHEM: 5402</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02355</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_p" name="3-Phospho-D-glycerate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3497</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17794</p>
+ <p>KEGG: C00197</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ap5a_c" name="P1-P5-Bis-5-adenosyl-pentaphosphate" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N10O22P5</p>
+ <p>PUBCHEM: 6757</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04058</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cump_p" name="2-3-Cyclic-UMP" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>PUBCHEM: 5402</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02355</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dttp_c" name="dTTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O14P3</p>
+ <p>PUBCHEM: 3743</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 18077</p>
+ <p>KEGG: C00459</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hhlipa_c" name="heptosyl-heptosyl-kdo2-lipidA" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C124H220N2O51P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alac__S_c" name="S-2-Acetolactate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O4</p>
+ <p>PUBCHEM: 8282</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18409</p>
+ <p>KEGG: C06010</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sertrna_c" name="L-Seryl-tRNA-Ser" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO2R</p>
+ <p>PUBCHEM: 5554</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29162</p>
+ <p>KEGG: C02553</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_argsuc_c" name="N-omega--L-Arginino-succinate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N4O6</p>
+ <p>PUBCHEM: 6235</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15682</p>
+ <p>KEGG: C03406</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhpt_c" name="Dihydropteroate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H13N6O3</p>
+ <p>PUBCHEM: 4175</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4581</p>
+ <p>KEGG: C00921</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg2_ST_p" name="pg2_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unaga_c" name="Undecaprenyl-diphospho-N-acetyl-glucosamine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C63H103NO12P2</p>
+ <p>PUBCHEM: 4508</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01289</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaile_c" name="tRNA-Ile" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4793</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29174</p>
+ <p>KEGG: C01644</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but_e" name="Butyrate-n-C40" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>PUBCHEM: 3545</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30772</p>
+ <p>KEGG: C00246</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpLa4fn_c" name="uridine-5--diphospho-beta-4-deoxy-4-formamido-L-arabinose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N3O16P2</p>
+ <p>PUBCHEM: 17756768</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_p" name="Uridine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>PUBCHEM: 3593</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16704</p>
+ <p>KEGG: C00299</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__D_c" name="D-Glutamate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>PUBCHEM: 3517</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15966</p>
+ <p>KEGG: C00217</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl4_c" name="Cobalt-precorrin-4" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H44CoN4O16</p>
+ <p>PUBCHEM: 13707</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11540</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_c" name="Uridine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>PUBCHEM: 3593</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16704</p>
+ <p>KEGG: C00299</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but_p" name="Butyrate-n-C40" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>PUBCHEM: 3545</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30772</p>
+ <p>KEGG: C00246</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_c" name="L-Lactate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3486</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 422</p>
+ <p>KEGG: C00186</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_e" name="Uridine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>PUBCHEM: 3593</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16704</p>
+ <p>KEGG: C00299</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl2_c" name="Cobalt-precorrin-2" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H39CoN4O16</p>
+ <p>PUBCHEM: 13705</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11538</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn141_p" name="cardiolipin-tetratetradec-7-enoyl-n-C141" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C65H116O17P2</p>
+ <p>PUBCHEM: 8259</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34hpp_c" name="3-4-Hydroxyphenyl-pyruvate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O4</p>
+ <p>PUBCHEM: 4406</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15999</p>
+ <p>KEGG: C01179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5aprbu_c" name="5-Amino-6-5-phosphoribitylamino-uracil" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15N4O9P</p>
+ <p>PUBCHEM: 7081</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18247</p>
+ <p>KEGG: C04454</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ohexACP_c" name="3-Oxohexanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O9PRS</p>
+ <p>PUBCHEM: 8041</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05746</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_c" name="UDP-N-acetyl-D-glucosamine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3345</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16264</p>
+ <p>KEGG: C00043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_c" name="Cu2" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 3370</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28694</p>
+ <p>KEGG: C00070</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_p" name="3-hydroxycinnamic-acid" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_e" name="UDP-N-acetyl-D-glucosamine" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3345</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16264</p>
+ <p>KEGG: C00043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_e" name="Cu2" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 3370</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28694</p>
+ <p>KEGG: C00070</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fc1p_c" name="L-Fuculose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O8P</p>
+ <p>PUBCHEM: 4333</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 6220</p>
+ <p>KEGG: C01099</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_p" name="Hydrogen-cyanide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>PUBCHEM: 4537</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18407</p>
+ <p>KEGG: C01326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_q8_c" name="Ubiquinone-8" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H74O4</p>
+ <p>PUBCHEM: 3689</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16389</p>
+ <p>KEGG: C00399</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_p" name="Cu2" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 3370</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28694</p>
+ <p>KEGG: C00070</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_p" name="UDP-N-acetyl-D-glucosamine" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3345</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16264</p>
+ <p>KEGG: C00043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rhcys_c" name="S-Ribosyl-L-homocysteine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H17NO6S</p>
+ <p>PUBCHEM: 6343</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03539</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm3p_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H52N6O19</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_e" name="Hydrogen-cyanide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>PUBCHEM: 4537</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18407</p>
+ <p>KEGG: C01326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_grdp_c" name="Geranyl-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17O7P2</p>
+ <p>PUBCHEM: 3634</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17211</p>
+ <p>KEGG: C00341</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_c" name="Hydrogen-cyanide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>PUBCHEM: 4537</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18407</p>
+ <p>KEGG: C01326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg161_p" name="Phosphatidylglycerol-dihexadec-9-enoyl-n-C161" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H70O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dpcoa_c" name="Dephospho-CoA" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H33N7O13P2S</p>
+ <p>PUBCHEM: 4138</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15468</p>
+ <p>KEGG: C00882</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp_c" name="dTDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O11P2</p>
+ <p>PUBCHEM: 3654</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18075</p>
+ <p>KEGG: C00363</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg161_c" name="Phosphatidylglycerol-dihexadec-9-enoyl-n-C161" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H70O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_palmACP_c" name="Palmitoyl-ACP-n-C160ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51N2O8PRS</p>
+ <p>PUBCHEM: 8059</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05764</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_p" name="Inosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>PUBCHEM: 3588</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17596</p>
+ <p>KEGG: C00294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp7Oag_p" name="Undecaprenyl-diphosphate-O-antigene-7x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C223H370O126P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nicrnt_c" name="Nicotinate-D-ribonucleotide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO9P</p>
+ <p>PUBCHEM: 4411</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15763</p>
+ <p>KEGG: C01185</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_e" name="3-hydroxycinnamic-acid" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_c" name="Salmochelin-SX" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_e" name="Salmochelin-SX" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_e" name="L-Lyxose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 4676</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28480</p>
+ <p>KEGG: C01508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_e" name="cis-Aconitate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>PUBCHEM: 3707</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 32805</p>
+ <p>KEGG: C00417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_p" name="D-Alanine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3433</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15570</p>
+ <p>KEGG: C00133</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mercppyr_c" name="Mercaptopyruvate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3S</p>
+ <p>PUBCHEM: 4208</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16208</p>
+ <p>KEGG: C00957</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4L_c" name="KDO-2-lipid-IV-A-with-laurate" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C96H170N2O38P2</p>
+ <p>PUBCHEM: 8490</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06251</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_e" name="D-Alanine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3433</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15570</p>
+ <p>KEGG: C00133</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_c" name="D-Alanine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3433</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15570</p>
+ <p>KEGG: C00133</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asntrna_c" name="L-Asparaginyl-tRNA-Asn" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H23N2O12PR2</p>
+ <p>PUBCHEM: 6232</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29265</p>
+ <p>KEGG: C03402</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_p" name="Hexanoate-n-C60" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>PUBCHEM: 4740</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30776</p>
+ <p>KEGG: C01585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_p" name="UDPgalactose" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3354</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18307</p>
+ <p>KEGG: C00052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pap_c" name="Adenosine-3-5-bisphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O10P2</p>
+ <p>PUBCHEM: 3356</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 17985</p>
+ <p>KEGG: C00054</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_c" name="Inosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>PUBCHEM: 3588</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17596</p>
+ <p>KEGG: C00294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipidAds_c" name="Lipid-A-Disaccharide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H127N2O20P</p>
+ <p>PUBCHEM: 7476</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18380</p>
+ <p>KEGG: C04932</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_c" name="UDPgalactose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3354</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18307</p>
+ <p>KEGG: C00052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_c" name="Hexanoate-n-C60" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>PUBCHEM: 4740</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30776</p>
+ <p>KEGG: C01585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_e" name="Hexanoate-n-C60" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>PUBCHEM: 4740</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30776</p>
+ <p>KEGG: C01585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_e" name="UDPgalactose" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3354</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18307</p>
+ <p>KEGG: C00052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acac_p" name="Acetoacetate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>PUBCHEM: 3464</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00164</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adprib_c" name="ADPribose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O14P2</p>
+ <p>PUBCHEM: 3595</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16960</p>
+ <p>KEGG: C00301</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c7mrseACP_c" name="trans-3-cis-7-myristoleoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H43N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adcobn_c" name="Adenosylcobyric-acid" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H76CoN15O11</p>
+ <p>PUBCHEM: 8738</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 2483</p>
+ <p>KEGG: C06507</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acac_e" name="Acetoacetate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>PUBCHEM: 3464</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00164</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipidA_c" name="2-3-2-3-Tetrakis-beta-hydroxymyristoyl-D-glucosaminyl-1-6-beta-D-glucosamine-1-4-bisphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H126N2O23P2</p>
+ <p>PUBCHEM: 7476</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 18380</p>
+ <p>KEGG: C04932</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_c" name="O-Acetyl-L-serine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>PUBCHEM: 4228</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17981</p>
+ <p>KEGG: C00979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg120_p" name="Phosphatidylglycerol-didodecanoyl-n-C120" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H58O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_e" name="O-Acetyl-L-serine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>PUBCHEM: 4228</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17981</p>
+ <p>KEGG: C00979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_p" name="D-Galactarate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4135</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00879</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>PUBCHEM: 3374</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18021 44897</p>
+ <p>KEGG: C00074</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_e" name="Phosphoenolpyruvate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>PUBCHEM: 3374</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18021 44897</p>
+ <p>KEGG: C00074</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg120_c" name="Phosphatidylglycerol-didodecanoyl-n-C120" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H58O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcpalm9eACP_c" name="R-3-hydroxy-cis-palm-9-eoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_e" name="D-Galactarate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4135</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00879</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_c" name="D-Galactarate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4135</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00879</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppgpp_c" name="Guanosine-3-5-bis-diphosphate" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O17P4</p>
+ <p>PUBCHEM: 4450</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 17633</p>
+ <p>KEGG: C01228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnacys_c" name="tRNA-Cys" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4788</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29167</p>
+ <p>KEGG: C01639</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs1_c" name="salchs1_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_e" name="sulfur-dioxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>PUBCHEM: 11497</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18422</p>
+ <p>KEGG: C09306</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcoa_c" name="Hexadecenoyl-CoA-n-C161CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O17P3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_p" name="Maltose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3508</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17306</p>
+ <p>KEGG: C00208</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_e" name="D-Glyceraldehyde" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3856</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17378</p>
+ <p>KEGG: C00577</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_c" name="D-Glyceraldehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3856</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17378</p>
+ <p>KEGG: C00577</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_c" name="Maltose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3508</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17306</p>
+ <p>KEGG: C00208</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_e" name="Maltose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3508</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17306</p>
+ <p>KEGG: C00208</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_p" name="D-Glyceraldehyde" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3856</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17378</p>
+ <p>KEGG: C00577</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cystrna_c" name="L-Cysteinyl-tRNA-Cys" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOSR</p>
+ <p>PUBCHEM: 6018</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29152</p>
+ <p>KEGG: C03125</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpg_c" name="udcpg_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 7121</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16046</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_taur_e" name="Taurine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>PUBCHEM: 3544</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15891</p>
+ <p>KEGG: C00245</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peamn_p" name="Phenethylamine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>PUBCHEM: 7711</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18397</p>
+ <p>KEGG: C05332</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_p" name="D-tartrate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 5189</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15672</p>
+ <p>KEGG: C02107</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl5p_c" name="1-deoxy-D-xylulose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>PUBCHEM: 13609</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16493</p>
+ <p>KEGG: C11437</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_s7p_c" name="Sedoheptulose-7-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>PUBCHEM: 3576</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15721</p>
+ <p>KEGG: C00281</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peamn_e" name="Phenethylamine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>PUBCHEM: 7711</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18397</p>
+ <p>KEGG: C05332</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_taur_p" name="Taurine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>PUBCHEM: 3544</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15891</p>
+ <p>KEGG: C00245</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_e" name="L-Lysine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>PUBCHEM: 3349</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18019</p>
+ <p>KEGG: C00047</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odec11eg3p_p" name="2-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H40O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_p" name="L-methionine-R-sulfoxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 847</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg160_c" name="acyl-phosphatidylglycerol-n-C160" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C54H104O11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_p" name="myo-Inositol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3437</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17268</p>
+ <p>KEGG: C00137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_p" name="L-Lysine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>PUBCHEM: 3349</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18019</p>
+ <p>KEGG: C00047</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_e" name="myo-Inositol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3437</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17268</p>
+ <p>KEGG: C00137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_c" name="myo-Inositol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3437</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17268</p>
+ <p>KEGG: C00137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thdp_c" name="2-3-4-5-Tetrahydrodipicolinate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7NO4</p>
+ <p>PUBCHEM: 6692</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 864</p>
+ <p>KEGG: C03972</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmnmanabe_c" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H130O24P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abutn_c" name="4-Aminobutanal" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H10NO</p>
+ <p>PUBCHEM: 3835</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 17769</p>
+ <p>KEGG: C00555</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_e" name="UDP-D-glucuronate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>PUBCHEM: 3467</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17200</p>
+ <p>KEGG: C00167</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_c" name="UDP-D-glucuronate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>PUBCHEM: 3467</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17200</p>
+ <p>KEGG: C00167</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acanth_c" name="N-Acetylanthranilate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H8NO3</p>
+ <p>PUBCHEM: 8568</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16803</p>
+ <p>KEGG: C06332</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_e" name="R-Propane-1-2-diol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5836</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28972</p>
+ <p>KEGG: C02912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_c" name="R-Propane-1-2-diol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5836</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28972</p>
+ <p>KEGG: C02912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2p4c2me_c" name="2-phospho-4-cytidine-5-diphospho-2-C-methyl-D-erythritol" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N3O17P3</p>
+ <p>PUBCHEM: 13608</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16840</p>
+ <p>KEGG: C11436</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_p" name="UDP-D-glucuronate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>PUBCHEM: 3467</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17200</p>
+ <p>KEGG: C00167</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe181_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_e" name="L-Prolinylglycine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dda7p_c" name="2-Dehydro-3-deoxy-D-arabino-heptonate-7-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O10P</p>
+ <p>PUBCHEM: 7271</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18150</p>
+ <p>KEGG: C04691</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2mb4p_c" name="1-hydroxy-2-methyl-2-E-butenyl-4-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P2</p>
+ <p>PUBCHEM: 13975</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 15664</p>
+ <p>KEGG: C11811</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_c" name="L-Prolinylglycine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhmp_c" name="R-2-3-Dihydroxy-3-methylpentanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O4</p>
+ <p>PUBCHEM: 8280</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 27512 49258</p>
+ <p>KEGG: C06007</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpfuc_c" name="GDP-L-fucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O15P2</p>
+ <p>PUBCHEM: 3619</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17009</p>
+ <p>KEGG: C00325</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe181_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phhlipa_c" name="phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" charge="-8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C124H219N2O54P3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_p" name="L-Prolinylglycine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_p" name="Formate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>PUBCHEM: 3358</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30751</p>
+ <p>KEGG: C00058</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_e" name="Deoxyuridine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>PUBCHEM: 3809</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16450</p>
+ <p>KEGG: C00526</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmrs2eACP_c" name="trans-Tetradec-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O8PRS</p>
+ <p>PUBCHEM: 8055</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05760</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs_c" name="2-3-dihydroxybenzoylserine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_c" name="Deoxyuridine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>PUBCHEM: 3809</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16450</p>
+ <p>KEGG: C00526</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrp_e" name="Phosphotyrosine" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>PUBCHEM: 8732</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06501</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_e" name="Formate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>PUBCHEM: 3358</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30751</p>
+ <p>KEGG: C00058</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_c" name="Formate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>PUBCHEM: 3358</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30751</p>
+ <p>KEGG: C00058</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_p" name="Deoxyuridine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>PUBCHEM: 3809</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16450</p>
+ <p>KEGG: C00526</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpacgal_p" name="UDP-N-acetyl-D-galactosamine" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3503</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16650</p>
+ <p>KEGG: C00203</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_c" name="Aminoimidazole-riboside" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_e" name="Aminoimidazole-riboside" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpacgal_e" name="UDP-N-acetyl-D-galactosamine" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3503</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16650</p>
+ <p>KEGG: C00203</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmhep7p_c" name="D-Glycero-D-manno-heptose-7-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>PUBCHEM: 10038</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28723</p>
+ <p>KEGG: C07836</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alatrna_c" name="L-Alanyl-tRNA-Ala" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOR</p>
+ <p>PUBCHEM: 4142</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 17732</p>
+ <p>KEGG: C00886</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_p" name="Aminoimidazole-riboside" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cob1nda_c" name="Cob-I-yrinate-a-c-diamide" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H56CoN6O12</p>
+ <p>PUBCHEM: 8736</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 28531</p>
+ <p>KEGG: C06505</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nadp_c" name="Nicotinamide-adenine-dinucleotide-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H25N7O17P3</p>
+ <p>PUBCHEM: 3308</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18009</p>
+ <p>KEGG: C00006</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uLa4fn_c" name="undecaprenyl-phosphate-4-amino-4-formyl-L-arabinose" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C61H99N1O8P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucarg_c" name="N2-Succinyl-L-arginine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N4O5</p>
+ <p>PUBCHEM: 6152</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17705</p>
+ <p>KEGG: C03296</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_c" name="L-Cystine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>PUBCHEM: 3774</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16283</p>
+ <p>KEGG: C00491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_e" name="dGMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3653</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16192</p>
+ <p>KEGG: C00362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmlz_c" name="6-7-Dimethyl-8-1-D-ribityl-lumazine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H18N4O6</p>
+ <p>PUBCHEM: 6983</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17601</p>
+ <p>KEGG: C04332</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_c" name="dGMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3653</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16192</p>
+ <p>KEGG: C00362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_e" name="L-Cystine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>PUBCHEM: 3774</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16283</p>
+ <p>KEGG: C00491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc2p_p" name="Glycerol-2-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 5889</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17270</p>
+ <p>KEGG: C02979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thmpp_c" name="Thiamine-diphosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16N4O7P2S</p>
+ <p>PUBCHEM: 3368</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 9532</p>
+ <p>KEGG: C00068</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_p" name="L-Cystine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>PUBCHEM: 3774</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16283</p>
+ <p>KEGG: C00491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhor__S_c" name="S-Dihydroorotate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N2O4</p>
+ <p>PUBCHEM: 3630</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17025</p>
+ <p>KEGG: C00337</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_p" name="dGMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3653</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16192</p>
+ <p>KEGG: C00362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_p" name="Formamide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>PUBCHEM: 3771</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16397</p>
+ <p>KEGG: C00488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo8p_c" name="3-Deoxy-D-manno-octulosonate-8-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12O11P</p>
+ <p>PUBCHEM: 7098</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18069</p>
+ <p>KEGG: C04478</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_p" name="L-Homoserine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3561</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15699</p>
+ <p>KEGG: C00263</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_c" name="D-Fructose-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3385</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: C00085</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_c" name="L-Homoserine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3561</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15699</p>
+ <p>KEGG: C00263</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_um4p_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate-D-alanine" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H56N8O27P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_c" name="Formamide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>PUBCHEM: 3771</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16397</p>
+ <p>KEGG: C00488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_p" name="D-Fructose-6-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3385</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: C00085</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_e" name="Formamide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>PUBCHEM: 3771</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16397</p>
+ <p>KEGG: C00488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_e" name="L-Homoserine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3561</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15699</p>
+ <p>KEGG: C00263</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nadh_c" name="Nicotinamide-adenine-dinucleotide--reduced" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H27N7O14P2</p>
+ <p>PUBCHEM: 3306</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16908</p>
+ <p>KEGG: C00004</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocACP_c" name="Octanoyl-ACP-n-C80ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35N2O8PRS</p>
+ <p>PUBCHEM: 8047</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05752</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mi1p__D_c" name="1D-myo-Inositol-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 4404</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18297</p>
+ <p>KEGG: C01177</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr140_p" name="1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H60O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaglu_c" name="tRNA-Glu" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4790</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29175</p>
+ <p>KEGG: C01641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr140_c" name="1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H60O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pant__R_c" name="R-Pantoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O4</p>
+ <p>PUBCHEM: 3805</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 14737 15980</p>
+ <p>KEGG: C00522</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dopa_e" name="Dopamine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>PUBCHEM: 6517</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18243</p>
+ <p>KEGG: C03758</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1ddecg3p_p" name="1-dodecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H29O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_p" name="Oxaloacetate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>PUBCHEM: 3338</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30744</p>
+ <p>KEGG: C00036</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_e" name="Orotate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>PUBCHEM: 3589</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16742</p>
+ <p>KEGG: C00295</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_toctd2eACP_c" name="trans-octadec-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_c" name="L-Proline" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>PUBCHEM: 3448</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17203</p>
+ <p>KEGG: C00148</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_e" name="L-Proline" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>PUBCHEM: 3448</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17203</p>
+ <p>KEGG: C00148</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_c" name="Orotate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>PUBCHEM: 3589</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16742</p>
+ <p>KEGG: C00295</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_e" name="Oxaloacetate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>PUBCHEM: 3338</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30744</p>
+ <p>KEGG: C00036</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1ddecg3p_c" name="1-dodecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H29O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dopa_p" name="Dopamine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>PUBCHEM: 6517</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18243</p>
+ <p>KEGG: C03758</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_c" name="Oxaloacetate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>PUBCHEM: 3338</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30744</p>
+ <p>KEGG: C00036</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_p" name="L-Proline" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>PUBCHEM: 3448</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17203</p>
+ <p>KEGG: C00148</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_p" name="Orotate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>PUBCHEM: 3589</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16742</p>
+ <p>KEGG: C00295</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ohpb_c" name="2-Oxo-3-hydroxy-4-phosphobutanoate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O8P</p>
+ <p>PUBCHEM: 8324</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 27951</p>
+ <p>KEGG: C06054</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_p" name="L-Arabinose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3558</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17535</p>
+ <p>KEGG: C00259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_p" name="Ethanol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>PUBCHEM: 3752</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16236</p>
+ <p>KEGG: C00469</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_e" name="L-Arabinose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3558</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17535</p>
+ <p>KEGG: C00259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_c" name="L-Arabinose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3558</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17535</p>
+ <p>KEGG: C00259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe161_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>PUBCHEM: 7069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_p" name="Fe-III-hydroxamate" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>PUBCHEM: 8470</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06227</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_d5kg_c" name="d5kg_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 9109</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 27972</p>
+ <p>KEGG: C06892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm5p_c" name="Shikimate-5-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O8P</p>
+ <p>PUBCHEM: 6057</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17052</p>
+ <p>KEGG: C03175</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp13Oag_p" name="Undecaprenyl-diphosphate-O-antigene-13x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C367H610O228P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acACP_c" name="Acetyl-ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H23N2O8PRS</p>
+ <p>PUBCHEM: 6663</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03939</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_e" name="Glycine-betaine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3985</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17750</p>
+ <p>KEGG: C00719</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_c" name="Glycine-betaine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3985</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17750</p>
+ <p>KEGG: C00719</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdddecg_c" name="CDP-1-2-didodecanoylglycerol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H63N3O15P2</p>
+ <p>PUBCHEM: 3567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_e" name="Fe-III-hydroxamate" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>PUBCHEM: 8470</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06227</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_citr__L_c" name="L-Citrulline" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13N3O3</p>
+ <p>PUBCHEM: 3621</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16349</p>
+ <p>KEGG: C00327</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_p" name="Glycine-betaine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3985</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17750</p>
+ <p>KEGG: C00719</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gggagicolipa_c" name="glucosyl-glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C169H291N2O94P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe160_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>PUBCHEM: 7069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdodec11eg_c" name="CDP-1-2-dioctadec-11-enoylglycerol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H83N3O15P2</p>
+ <p>PUBCHEM: 3567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_actACP_c" name="Acetoacetyl-ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N2O9PRS</p>
+ <p>PUBCHEM: 8039</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05744</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gicolipa_c" name="glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H261N2O79P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_bbtcoa_c" name="gamma-butyrobetainyl-CoA" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O17P3S</p>
+ <p>PUBCHEM: 726??6196</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28684</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_e" name="D-Fructose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3395</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15824</p>
+ <p>KEGG: C00095</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3gmp_e" name="3-GMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 8443</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06193</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_methf_c" name="5-10-Methenyltetrahydrofolate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H20N7O6</p>
+ <p>PUBCHEM: 3733</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15638</p>
+ <p>KEGG: C00445</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_c" name="D-Fructose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3395</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15824</p>
+ <p>KEGG: C00095</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agdpcbi_c" name="Adenosine-GDP-cobinamide" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H95CoN21O21P2</p>
+ <p>PUBCHEM: 8741</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06510</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa141_p" name="1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H55O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4und_p" name="enterobacterial-common-antigen-x4-undecaprenyl-diphosphate" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H234N12O67P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_p" name="D-Fructose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3395</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15824</p>
+ <p>KEGG: C00095</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3gmp_p" name="3-GMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 8443</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06193</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl6a_c" name="Cobalt-precorrin-6a" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H45CoN4O16</p>
+ <p>PUBCHEM: 13709</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11542</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ara5p_c" name="D-Arabinose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 4344</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16241</p>
+ <p>KEGG: C01112</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa141_c" name="1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H55O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_e" name="Co2" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>PUBCHEM: 3475</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 27638</p>
+ <p>KEGG: C00175</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_c" name="Co2" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>PUBCHEM: 3475</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 27638</p>
+ <p>KEGG: C00175</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dkdi_c" name="dkdi_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 9108</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4077</p>
+ <p>KEGG: C06891</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pmtcoa_c" name="Palmitoyl-CoA-n-C160CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H62N7O17P3S</p>
+ <p>PUBCHEM: 3454</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15525</p>
+ <p>KEGG: C00154</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hodcoa_c" name="S-3-Hydroxyoctadecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H66N7O18P3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_p" name="Co2" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>PUBCHEM: 3475</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 27638</p>
+ <p>KEGG: C00175</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lpp_sp_p" name="lpp_sp_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hphhlipa_c" name="heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" charge="-8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C131H231N2O60P3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_p" name="D-Serine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 4003</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16523</p>
+ <p>KEGG: C00740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_p" name="Cys-Gly" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>PUBCHEM: 4606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4047</p>
+ <p>KEGG: C01419</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pan4p_c" name="Pantetheine-4-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H21N2O7PS</p>
+ <p>PUBCHEM: 4365</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16858</p>
+ <p>KEGG: C01134</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_e" name="Cys-Gly" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>PUBCHEM: 4606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4047</p>
+ <p>KEGG: C01419</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_c" name="D-Serine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 4003</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16523</p>
+ <p>KEGG: C00740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_e" name="D-Serine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 4003</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16523</p>
+ <p>KEGG: C00740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_c" name="Cys-Gly" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>PUBCHEM: 4606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4047</p>
+ <p>KEGG: C01419</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phthr_c" name="O-Phospho-4-hydroxy-L-threonine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO7P</p>
+ <p>PUBCHEM: 8325</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18336</p>
+ <p>KEGG: C06055</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adcob1nda_c" name="Adenosyl-cobyrinate-a-c-diamide" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H68CoN11O15</p>
+ <p>PUBCHEM: 8737</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 2482</p>
+ <p>KEGG: C06506</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dr1p_c" name="2-Deoxy-D-ribose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>PUBCHEM: 3941</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28542</p>
+ <p>KEGG: C00672</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tagur_c" name="D-Tagaturonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3838</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17886</p>
+ <p>KEGG: C00558</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt__D_e" name="D-Sorbitol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4052</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17924</p>
+ <p>KEGG: C00794</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl5a_c" name="Cobalt-precorrin-5a" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H46CoN4O16</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16242</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_c" name="Urea" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>PUBCHEM: 3386</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16199</p>
+ <p>KEGG: C00086</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_p" name="Phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>PUBCHEM: 3311</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18367</p>
+ <p>KEGG: C00009</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpmann_c" name="GDP-D-mannose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O16P2</p>
+ <p>PUBCHEM: 3396</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15820</p>
+ <p>KEGG: C00096</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_protrna_c" name="L-Prolyl-tRNA-Pro" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NOR</p>
+ <p>PUBCHEM: 5665</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29154</p>
+ <p>KEGG: C02702</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4px4px4p_p" name="three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C111H167N21O58</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt__D_p" name="D-Sorbitol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4052</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17924</p>
+ <p>KEGG: C00794</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_c" name="Phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>PUBCHEM: 3311</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18367</p>
+ <p>KEGG: C00009</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_e" name="Phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>PUBCHEM: 3311</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18367</p>
+ <p>KEGG: C00009</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg120_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe161_p" name="phosphatidylethanolamine-dihexadec-9enoyl-n-C161" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H70N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hcys__L_c" name="L-Homocysteine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2S</p>
+ <p>PUBCHEM: 3455</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17588</p>
+ <p>KEGG: C00155</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe161_c" name="phosphatidylethanolamine-dihexadec-9enoyl-n-C161" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H70N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2h3oppan_c" name="2-Hydroxy-3-oxopropanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O4</p>
+ <p>PUBCHEM: 4376</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16992</p>
+ <p>KEGG: C01146</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctp_c" name="CTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O14P3</p>
+ <p>PUBCHEM: 3363</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 17677</p>
+ <p>KEGG: C00063</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe120_c" name="phosphatidylethanolamine-didodecanoyl-n-C120" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H58N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppg9_c" name="Protoporphyrinogen-IX" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H38N4O4</p>
+ <p>PUBCHEM: 4317</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15435</p>
+ <p>KEGG: C01079</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_c" name="Fe-III-hydroxamate" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>PUBCHEM: 8470</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06227</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe120_p" name="phosphatidylethanolamine-didodecanoyl-n-C120" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H58N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ru5p__D_c" name="D-Ribulose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 3499</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17363</p>
+ <p>KEGG: C00199</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3odcoa_c" name="3-Oxodecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48N7O18P3S</p>
+ <p>PUBCHEM: 7652</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28528</p>
+ <p>KEGG: C05265</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4r5au_c" name="4-1-D-Ribitylamino-5-aminouracil" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16N4O6</p>
+ <p>PUBCHEM: 7303</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15934</p>
+ <p>KEGG: C04732</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ru5p__L_c" name="L-Ribulose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 4335</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17666</p>
+ <p>KEGG: C01101</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdec7eg3p_c" name="2-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H32O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdec7eg3p_p" name="2-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H32O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpac_p" name="3-4-Dihydroxyphenylacetaldehyde" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>PUBCHEM: 6744</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mqn8_c" name="Menaquinone-8" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C51H72O2</p>
+ <p>PUBCHEM: 4086</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00828</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oc2coa_c" name="trans-Oct-2-enoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N7O17P3S</p>
+ <p>PUBCHEM: 7663</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27537</p>
+ <p>KEGG: C05276</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpac_e" name="3-4-Dihydroxyphenylacetaldehyde" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>PUBCHEM: 6744</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_c" name="tricarballylate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6 </p>
+ <p>PUBCHEM: 135626273</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 62517</p>
+ <p>KEGG: C19806</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dann_c" name="7-8-Diaminononanoate" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H21N2O2</p>
+ <p>PUBCHEM: 4280</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 2247</p>
+ <p>KEGG: C01037</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_e" name="tricarballylate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6 </p>
+ <p>PUBCHEM: 135626273</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 62517</p>
+ <p>KEGG: C19806</p>
+ </html>
+ </notes>
+ </species>i
+ <species id="M_thex2eACP_c" name="trans-Hex-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O8PRS</p>
+ <p>PUBCHEM: 8043</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05748</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tddec2eACP_c" name="trans-Dodec-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O8PRS</p>
+ <p>PUBCHEM: 8053</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05758</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5drib_c" name="5-deoxyribose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 3449</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbasp_c" name="N-Carbamoyl-L-aspartate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O5</p>
+ <p>PUBCHEM: 3727</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15859</p>
+ <p>KEGG: C00438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_p" name="tricarballylate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6 </p>
+ <p>PUBCHEM: 135626273</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 62517</p>
+ <p>KEGG: C19806</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_seramp_c" name="L-seryl-AMP" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H19N6O9P</p>
+ <p>PUBCHEM: 8115</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05820</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_N1aspmd_c" name="N1-Acetylspermidine" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H23N3O</p>
+ <p>PUBCHEM: 3886</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17927</p>
+ <p>KEGG: C00612</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg161_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_p" name="dAMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>PUBCHEM: 3651</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17713</p>
+ <p>KEGG: C00360</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhnpt_c" name="Dihydroneopterin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N5O4</p>
+ <p>PUBCHEM: 7426</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17001</p>
+ <p>KEGG: C04874</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r1p_c" name="alpha-D-Ribose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00442</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_c" name="dAMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>PUBCHEM: 3651</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17713</p>
+ <p>KEGG: C00360</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_e" name="dAMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>PUBCHEM: 3651</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17713</p>
+ <p>KEGG: C00360</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glytrna_c" name="Glycyl-tRNA-Gly" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4NOR</p>
+ <p>PUBCHEM: 5445</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29156</p>
+ <p>KEGG: C02412</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_p" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_p" name="D-Glucose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3333</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4167</p>
+ <p>KEGG: C00031</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idp_c" name="IDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O11P2</p>
+ <p>PUBCHEM: 3404</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17808</p>
+ <p>KEGG: C00104</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lystrna_c" name="L-Lysine-tRNA-Lys" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14N2OR</p>
+ <p>PUBCHEM: 5037</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 16047</p>
+ <p>KEGG: C01931</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_c" name="D-Glucose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3333</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4167</p>
+ <p>KEGG: C00031</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_e" name="D-Glucose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3333</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4167</p>
+ <p>KEGG: C00031</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg160_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sulfac_p" name="sulfoacetate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>PUBCHEM: 7846991</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C14179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frdp_c" name="Farnesyl-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25O7P2</p>
+ <p>PUBCHEM: 3736</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17407</p>
+ <p>KEGG: C00448</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocddec5eACP_c" name="3-oxo-cis-dodec-5-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H39N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg160_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sulfac_e" name="sulfoacetate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>PUBCHEM: 7846991</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C14179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dh3dgal_c" name="2-Dehydro-3-deoxy-D-galactonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>PUBCHEM: 4438</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17028</p>
+ <p>KEGG: C01216</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leutrna_c" name="L-Leucyl-tRNA-Leu" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12NOR</p>
+ <p>PUBCHEM: 5136</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16624</p>
+ <p>KEGG: C02047</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_seln_c" name="Selenide" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HSe</p>
+ <p>PUBCHEM: 4690</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16503</p>
+ <p>KEGG: C01528</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_actp_c" name="Acetyl-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O5P</p>
+ <p>PUBCHEM: 3527</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15350</p>
+ <p>KEGG: C00227</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_p" name="Propanal" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>PUBCHEM: 3762</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17153</p>
+ <p>KEGG: C00479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe2_ST_p" name="pe2_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_c" name="Propanal" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>PUBCHEM: 3762</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17153</p>
+ <p>KEGG: C00479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_e" name="Propanal" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>PUBCHEM: 3762</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17153</p>
+ <p>KEGG: C00479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ppan_c" name="D-4-Phosphopantothenate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15NO8P</p>
+ <p>PUBCHEM: 6304</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 15905</p>
+ <p>KEGG: C03492</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_p" name="Ferrioxamine-G-fe" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_c" name="Xanthosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>PUBCHEM: 4895</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18107</p>
+ <p>KEGG: C01762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppap_c" name="Propanoyl-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O5P</p>
+ <p>PUBCHEM: 5809</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02876</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocmrs7eACP_c" name="3-oxo-cis-myristol-7-eoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H43N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_db4p_c" name="3-4-dihydroxy-2-butanone-4-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O6P</p>
+ <p>PUBCHEM: 17396548</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15556</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dhguln_c" name="2-Dehydro-L-gulonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3458</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg141_c" name="Phosphatidylglycerol-ditetradec-7-enoyl-n-C141" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H62O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_e" name="L-Lactate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3486</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 422</p>
+ <p>KEGG: C00186</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fpram_c" name="2-Formamido-N1-5-phospho-D-ribosyl-acetamidine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15N3O8P</p>
+ <p>PUBCHEM: 7229</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18413</p>
+ <p>KEGG: C04640</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5px3p_p" name="two-disacharide-linked-murein-units-pentapeptide-corsslinked-tripeptide-A2pm-A2pm--middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H112N14O39</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_stcoa_c" name="Stearoyl-CoA-n-C180CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H66N7O17P3S</p>
+ <p>PUBCHEM: 3702</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15541</p>
+ <p>KEGG: C00412</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp20Oag_p" name="Undecaprenyl-diphosphate-O-antigene-20x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C535H890O347P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe120_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg141_p" name="Phosphatidylglycerol-ditetradec-7-enoyl-n-C141" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H62O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_p" name="L-Lactate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3486</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 422</p>
+ <p>KEGG: C00186</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_e" name="Ethanolamine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>PUBCHEM: 3489</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16000</p>
+ <p>KEGG: C00189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_e" name="Ferrioxamine-G-fe" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca3und_p" name="enterobacterial-common-antigen-x3-undecaprenyl-diphosphate" compartment="p" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C127H198N9O52P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam_e" name="D-Glucosamine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>PUBCHEM: 3623</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 47977</p>
+ <p>KEGG: C00329</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdecg3p_c" name="1-hexadecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H37O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_c" name="Ethanolamine" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>PUBCHEM: 3489</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16000</p>
+ <p>KEGG: C00189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_p" name="D-Glucose-6-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3392</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 4170</p>
+ <p>KEGG: C00092</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_c" name="Isocitrate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3605</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30887</p>
+ <p>KEGG: C00311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_e" name="Isocitrate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3605</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30887</p>
+ <p>KEGG: C00311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam_p" name="D-Glucosamine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>PUBCHEM: 3623</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 47977</p>
+ <p>KEGG: C00329</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prbamp_c" name="1-5-Phosphoribosyl-AMP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O14P2</p>
+ <p>PUBCHEM: 5701</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02741</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_p" name="Ethanolamine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>PUBCHEM: 3489</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16000</p>
+ <p>KEGG: C00189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg180_p" name="Phosphatidylglycerol-dioctadecanoyl-n-C180" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H82O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_p" name="Isocitrate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3605</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30887</p>
+ <p>KEGG: C00311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_c" name="D-Glucose-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3392</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 4170</p>
+ <p>KEGG: C00092</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_e" name="D-Glucose-6-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3392</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 4170</p>
+ <p>KEGG: C00092</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gagicolipa_c" name="galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C157H271N2O84P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_c" name="Ferrioxamine-G-fe" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_e" name="D-Glucose-1-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3403</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16077 29042</p>
+ <p>KEGG: C00103</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_c" name="D-Glucose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3403</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16077 29042</p>
+ <p>KEGG: C00103</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_c" name="L-Malate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3449</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: C00149</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ACP_c" name="acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H21N2O7PRS</p>
+ <p>PUBCHEM: 3528</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00229</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_e" name="L-Malate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3449</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: C00149</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_p" name="D-Glucose-1-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3403</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16077 29042</p>
+ <p>KEGG: C00103</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_p" name="L-Malate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3449</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: C00149</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aso3_p" name="arsenite" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>PUBCHEM: 8922</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 29866</p>
+ <p>KEGG: C06697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ommbl_c" name="2-Octaprenyl-3-methyl-6-methoxy-1-4-benzoquinol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H74O3</p>
+ <p>PUBCHEM: 8109</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28636</p>
+ <p>KEGG: C05814</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4px4p4p_p" name="three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--one-uncrosslinked-tetrapaptide--middle-of-chain" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C111H169N21O59</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tpalm2eACP_c" name="trans-Hexadec-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O8PRS</p>
+ <p>PUBCHEM: 8058</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05763</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aso3_e" name="arsenite" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>PUBCHEM: 8922</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 29866</p>
+ <p>KEGG: C06697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5px4px4p_p" name="three-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H172N22O59</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_btcoa_c" name="Butanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H38N7O17P3S</p>
+ <p>PUBCHEM: 3436</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15517</p>
+ <p>KEGG: C00136</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaLglu_c" name="L-alanine-L-glutamate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ccmp_e" name="2-3-Cyclic-CMP" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>PUBCHEM: 5401</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_argtrna_c" name="L-Arginyl-tRNA-Arg" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14N4OR</p>
+ <p>PUBCHEM: 5239</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18366</p>
+ <p>KEGG: C02163</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ccmp_p" name="2-3-Cyclic-CMP" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>PUBCHEM: 5401</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_occoa_c" name="Octanoyl-CoA-n-C80CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H46N7O17P3S</p>
+ <p>PUBCHEM: 5048</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15533</p>
+ <p>KEGG: C01944</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_c" name="GMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 3444</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17345</p>
+ <p>KEGG: C00144</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_p" name="Phenylacetaldehyde" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>PUBCHEM: 3876</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16424</p>
+ <p>KEGG: C00601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_e" name="GMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 3444</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17345</p>
+ <p>KEGG: C00144</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_p" name="GMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 3444</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17345</p>
+ <p>KEGG: C00144</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_e" name="Phenylacetaldehyde" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>PUBCHEM: 3876</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16424</p>
+ <p>KEGG: C00601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4aaddg_c" name="dTDP-4-acetamido-4-6-dideoxy-D-galactose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H27N3O15P2</p>
+ <p>PUBCHEM: 8290</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28294</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_c" name="Phenylacetaldehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>PUBCHEM: 3876</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16424</p>
+ <p>KEGG: C00601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_btn_c" name="Biotin" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O3S</p>
+ <p>PUBCHEM: 3420</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15956</p>
+ <p>KEGG: C00120</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4iz5pp_c" name="4-Imidazolone-5-propanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7N2O3</p>
+ <p>PUBCHEM: 6455</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03680</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_p" name="Nitrous-oxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>PUBCHEM: 4143</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17045</p>
+ <p>KEGG: C00887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4c2me_c" name="4-cytidine-5-diphospho-2-C-methyl-D-erythritol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H23N3O14P2</p>
+ <p>PUBCHEM: 13607</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16578</p>
+ <p>KEGG: C11435</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_c" name="Nitrous-oxide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>PUBCHEM: 4143</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17045</p>
+ <p>KEGG: C00887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_e" name="Nitrous-oxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>PUBCHEM: 4143</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17045</p>
+ <p>KEGG: C00887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdec2eACP_c" name="trans-Dec-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O8PRS</p>
+ <p>PUBCHEM: 8049</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05754</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uamr_c" name="UDP-N-acetylmuramate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H28N3O19P2</p>
+ <p>PUBCHEM: 4292</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17882</p>
+ <p>KEGG: C01050</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_24dhhed_c" name="24dhhed_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8451</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06201</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_air_c" name="5-amino-1-5-phospho-D-ribosyl-imidazole" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N3O7P</p>
+ <p>PUBCHEM: 6208</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28843</p>
+ <p>KEGG: C03373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_athr__L_c" name="L-Allo-threonine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 7864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28718</p>
+ <p>KEGG: C05519</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_Pald_c" name="Phosphonoacetaldehyde" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O4P1</p>
+ <p>PUBCHEM: 6050</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18124</p>
+ <p>KEGG: C03167</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_e" name="L-Phenylalanine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>PUBCHEM: 3379</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17295</p>
+ <p>KEGG: C00079</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_e" name="Calcium" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>PUBCHEM: 3376</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29108</p>
+ <p>KEGG: C00076</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_p" name="L-Tyrosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>PUBCHEM: 3382</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17895</p>
+ <p>KEGG: C00082</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_c" name="Calcium" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>PUBCHEM: 3376</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29108</p>
+ <p>KEGG: C00076</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbcox_p" name="protein-disulfide-isomerase-II-oxidized" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_c" name="L-Phenylalanine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>PUBCHEM: 3379</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17295</p>
+ <p>KEGG: C00079</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe140_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fmnh2_c" name="Reduced-FMN" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H21N4O9P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_e" name="L-Tyrosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>PUBCHEM: 3382</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17895</p>
+ <p>KEGG: C00082</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_p" name="L-Phenylalanine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>PUBCHEM: 3379</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17295</p>
+ <p>KEGG: C00079</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mdr1p_c" name="5-Methylthio-5-deoxy-D-ribose-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7PS</p>
+ <p>PUBCHEM: 6864</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04188</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_p" name="Calcium" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>PUBCHEM: 3376</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29108</p>
+ <p>KEGG: C00076</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_c" name="L-Tyrosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>PUBCHEM: 3382</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17895</p>
+ <p>KEGG: C00082</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe140_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdecg3p_c" name="2-hexadecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tym_e" name="Tyramine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>PUBCHEM: 3766</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15760</p>
+ <p>KEGG: C00483</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ahdt_c" name="2-Amino-4-hydroxy-6-erythro-1-2-3-trihydroxypropyl-dihydropteridine-triphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N5O13P3</p>
+ <p>PUBCHEM: 7446</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 18372</p>
+ <p>KEGG: C04895</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4p3p_p" name="two-linked-disacharide-tetrapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H109N13O39</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ohdcoa_c" name="3-Oxohexadecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O18P3S</p>
+ <p>PUBCHEM: 7646</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15491</p>
+ <p>KEGG: C05259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_e" name="D-Fructose-6-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3385</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: C00085</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdecg3p_p" name="2-hexadecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tym_p" name="Tyramine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>PUBCHEM: 3766</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15760</p>
+ <p>KEGG: C00483</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_c" name="O-Phospho-L-serine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>PUBCHEM: 4251</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15811</p>
+ <p>KEGG: C01005</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_e" name="O-Phospho-L-serine" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>PUBCHEM: 4251</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15811</p>
+ <p>KEGG: C01005</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ethso3_e" name="ethanesulfonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_p" name="L-Tryptophan" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>PUBCHEM: 3378</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16828</p>
+ <p>KEGG: C00078</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_p" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 6921</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 7125</p>
+ <p>KEGG: C04256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_p" name="O-Phospho-L-serine" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>PUBCHEM: 4251</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15811</p>
+ <p>KEGG: C01005</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_e" name="L-Tryptophan" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>PUBCHEM: 3378</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16828</p>
+ <p>KEGG: C00078</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_e" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 6921</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 7125</p>
+ <p>KEGG: C04256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_c" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 6921</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 7125</p>
+ <p>KEGG: C04256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_c" name="L-Tryptophan" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>PUBCHEM: 3378</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16828</p>
+ <p>KEGG: C00078</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ethso3_p" name="ethanesulfonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_c" name="L-Rhamnose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 3790</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16055</p>
+ <p>KEGG: C00507</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_e" name="sn-Glycero-3-phosphoethanolamine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>PUBCHEM: 4454</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01233</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_p" name="Glycerophosphoglycerol" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>PUBCHEM: 6135</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03274</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dc2coa_c" name="trans-Dec-2-enoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48N7O17P3S</p>
+ <p>PUBCHEM: 7662</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 10723</p>
+ <p>KEGG: C05275</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_e" name="L-Rhamnose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 3790</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16055</p>
+ <p>KEGG: C00507</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_c" name="sn-Glycero-3-phosphoethanolamine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>PUBCHEM: 4454</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01233</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp161_p" name="Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69O13P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn160_p" name="cardiolipin-tetrahexadecanoyl-n-C160" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H140O17P2</p>
+ <p>PUBCHEM: 8259</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal1p_p" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_p" name="D-Xylose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3481</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15936</p>
+ <p>KEGG: C00181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_c" name="Glycerophosphoglycerol" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>PUBCHEM: 6135</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03274</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_p" name="L-Rhamnose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 3790</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16055</p>
+ <p>KEGG: C00507</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_p" name="sn-Glycero-3-phosphoethanolamine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>PUBCHEM: 4454</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01233</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_e" name="Glycerophosphoglycerol" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>PUBCHEM: 6135</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03274</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_e" name="D-Xylose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3481</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15936</p>
+ <p>KEGG: C00181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_c" name="D-Xylose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3481</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15936</p>
+ <p>KEGG: C00181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal1p_e" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhf_c" name="7-8-Dihydrofolate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H19N7O6</p>
+ <p>PUBCHEM: 3705</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15633</p>
+ <p>KEGG: C00415</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_p" name="sn-Glycero-3-phosphocholine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>PUBCHEM: 3939</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16870</p>
+ <p>KEGG: C00670</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_p" name="Ornithine" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>PUBCHEM: 4756</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18257</p>
+ <p>KEGG: C01602</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_p" name="Allantoin" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>PUBCHEM: 4709</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15676</p>
+ <p>KEGG: C01551</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp120_c" name="Phosphatidylglycerophosphate-didodecanoyl-n-C120" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_e" name="Ornithine" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>PUBCHEM: 4756</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18257</p>
+ <p>KEGG: C01602</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_e" name="sn-Glycero-3-phosphocholine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>PUBCHEM: 3939</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16870</p>
+ <p>KEGG: C00670</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_c" name="Ornithine" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>PUBCHEM: 4756</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18257</p>
+ <p>KEGG: C01602</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_c" name="AMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3322</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16027</p>
+ <p>KEGG: C00020</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_e" name="Allantoin" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>PUBCHEM: 4709</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15676</p>
+ <p>KEGG: C01551</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcaACP_c" name="Octadecanoyl-ACP-n-C180ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H55N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp120_p" name="Phosphatidylglycerophosphate-didodecanoyl-n-C120" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_c" name="Allantoin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>PUBCHEM: 4709</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15676</p>
+ <p>KEGG: C01551</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltt_c" name="Allantoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7N4O4</p>
+ <p>PUBCHEM: 3782</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30837</p>
+ <p>KEGG: C00499</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_p" name="Deoxycytidine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>PUBCHEM: 4137</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15698</p>
+ <p>KEGG: C00881</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aps_c" name="Adenosine-5-phosphosulfate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10PS</p>
+ <p>PUBCHEM: 3524</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17709</p>
+ <p>KEGG: C00224</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl_e" name="D-Mannitol" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 3682</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16899</p>
+ <p>KEGG: C00392</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23camp_p" name="2-3-Cyclic-AMP" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>PUBCHEM: 5400</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_c" name="Deoxycytidine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>PUBCHEM: 4137</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15698</p>
+ <p>KEGG: C00881</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_e" name="Deoxycytidine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>PUBCHEM: 4137</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15698</p>
+ <p>KEGG: C00881</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23camp_e" name="2-3-Cyclic-AMP" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>PUBCHEM: 5400</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl_p" name="D-Mannitol" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 3682</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16899</p>
+ <p>KEGG: C00392</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_p" name="rnam_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 6038</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15927</p>
+ <p>KEGG: C03150</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ap4a_c" name="P1-P4-Bis-5-adenosyl-tetraphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N10O19P4</p>
+ <p>PUBCHEM: 4479</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 17422</p>
+ <p>KEGG: C01260</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_c" name="rnam_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 6038</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15927</p>
+ <p>KEGG: C03150</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_e" name="rnam_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 6038</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15927</p>
+ <p>KEGG: C03150</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_c" name="Sulfite" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>PUBCHEM: 3394</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 48854</p>
+ <p>KEGG: C00094</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_e" name="Sulfite" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>PUBCHEM: 3394</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 48854</p>
+ <p>KEGG: C00094</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_e" name="Dihydroxyacetone" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3484</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16016</p>
+ <p>KEGG: C00184</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_c" name="Dihydroxyacetone" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3484</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16016</p>
+ <p>KEGG: C00184</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peptido_ST_p" name="peptido_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_p" name="Sulfite" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>PUBCHEM: 3394</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 48854</p>
+ <p>KEGG: C00094</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oddcoa_c" name="3-Oxododecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H52N7O18P3S</p>
+ <p>PUBCHEM: 7650</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27868</p>
+ <p>KEGG: C05263</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_p" name="Dihydroxyacetone" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3484</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16016</p>
+ <p>KEGG: C00184</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dkmpp_c" name="2-3-diketo-5-methylthio-1-phosphopentane" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6PS</p>
+ <p>PUBCHEM: 17396640</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15650</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrp_p" name="Phosphotyrosine" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>PUBCHEM: 8732</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06501</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_e" name="Formaldehyde" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>PUBCHEM: 3367</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16842</p>
+ <p>KEGG: C00067</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_c" name="Formaldehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>PUBCHEM: 3367</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16842</p>
+ <p>KEGG: C00067</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_p" name="Nicotinate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>PUBCHEM: 3552</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15940</p>
+ <p>KEGG: C00253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein_lpp_p" name="murein_lpp_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_c" name="D-tartrate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 5189</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15672</p>
+ <p>KEGG: C02107</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_p" name="Formaldehyde" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>PUBCHEM: 3367</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16842</p>
+ <p>KEGG: C00067</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_e" name="D-tartrate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 5189</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15672</p>
+ <p>KEGG: C02107</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_p" name="D-Mannose-6-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3572</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17369</p>
+ <p>KEGG: C00275</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_Nmtrp_c" name="N-Methyltryptophan" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H14N2O2</p>
+ <p>PUBCHEM: 5892</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15334</p>
+ <p>KEGG: C02983</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnapro_c" name="tRNA-Pro" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4798</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29177</p>
+ <p>KEGG: C01649</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_e" name="Ferrichrome" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>PUBCHEM: 8471</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_c" name="Ferrichrome" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>PUBCHEM: 8471</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_c" name="D-Mannose-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3572</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17369</p>
+ <p>KEGG: C00275</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_e" name="D-Mannose-6-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3572</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17369</p>
+ <p>KEGG: C00275</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdptp_c" name="Guanosine-3-diphosphate-5-triphosphate" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O20P5</p>
+ <p>PUBCHEM: 7111</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04494</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fad_c" name="Flavin-adenine-dinucleotide-oxidized" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H31N9O15P2</p>
+ <p>PUBCHEM: 3318</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16238</p>
+ <p>KEGG: C00016</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_p" name="Ferrichrome" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>PUBCHEM: 8471</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr160_p" name="1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H68O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_e" name="nickel" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>PUBCHEM: 3585</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28112</p>
+ <p>KEGG: C00291</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_c" name="nickel" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>PUBCHEM: 3585</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28112</p>
+ <p>KEGG: C00291</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr160_c" name="1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H68O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_p" name="nickel" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>PUBCHEM: 3585</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28112</p>
+ <p>KEGG: C00291</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_p" name="Sulfate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>PUBCHEM: 3359</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16189</p>
+ <p>KEGG: C00059</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_p" name="Urea" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>PUBCHEM: 3386</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16199</p>
+ <p>KEGG: C00086</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ckdo_c" name="CMP-3-deoxy-D-manno-octulosonate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H24N3O15P</p>
+ <p>PUBCHEM: 6808</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_c" name="Mn2" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>PUBCHEM: 3336</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18291</p>
+ <p>KEGG: C00034</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_e" name="Mn2" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>PUBCHEM: 3336</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18291</p>
+ <p>KEGG: C00034</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal_e" name="N-Acetyl-D-galactosamine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 4363</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28037</p>
+ <p>KEGG: C01132</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_c" name="Sulfate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>PUBCHEM: 3359</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16189</p>
+ <p>KEGG: C00059</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs2_c" name="23dhbzs2_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmbil_c" name="Hydroxymethylbilane" compartment="c" charge="-8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H38N4O17</p>
+ <p>PUBCHEM: 4269</p>
+ <p>CHARGE: -8</p>
+ <p>CHEBI: 16645</p>
+ <p>KEGG: C01024</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_e" name="Sulfate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>PUBCHEM: 3359</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16189</p>
+ <p>KEGG: C00059</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p5p5p_p" name="three-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C120H186N24O63</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_p" name="Mn2" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>PUBCHEM: 3336</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18291</p>
+ <p>KEGG: C00034</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal_p" name="N-Acetyl-D-galactosamine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 4363</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28037</p>
+ <p>KEGG: C01132</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glucys_c" name="gamma-L-Glutamyl-L-cysteine" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5S</p>
+ <p>PUBCHEM: 3938</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17515</p>
+ <p>KEGG: C00669</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hdcoa_c" name="S-3-Hydroxydecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H50N7O18P3S</p>
+ <p>PUBCHEM: 7651</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28325</p>
+ <p>KEGG: C05264</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_e" name="Urea" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>PUBCHEM: 3386</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16199</p>
+ <p>KEGG: C00086</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4mhetz_c" name="4-Methyl-5-2-hydroxyethyl-thiazole" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9NOS</p>
+ <p>PUBCHEM: 6954</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17957</p>
+ <p>KEGG: C04294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octeACP_c" name="cis-octadec-11-enoyl-acyl-carrier-protein-n-C181" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdp4dh36ddglc_c" name="CDP-4-dehydro-3-6-dideoxy-D-glucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N3O14P2</p>
+ <p>PUBCHEM: 6956</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17817</p>
+ <p>KEGG: C04297</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4mop_c" name="4-Methyl-2-oxopentanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O3</p>
+ <p>PUBCHEM: 3532</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 48430</p>
+ <p>KEGG: C00233</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lpp_p" name="lipoprotein" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XC16H30O1</p>
+ <p>PUBCHEM: 4953</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 6495</p>
+ <p>KEGG: C01834</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sarcs_c" name="Sarcosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3513</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15611</p>
+ <p>KEGG: C00213</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fcl__L_c" name="L-fuculose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 4858</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17617</p>
+ <p>KEGG: C01721</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu5p_c" name="L-Glutamate-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO7P</p>
+ <p>PUBCHEM: 6144</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17798</p>
+ <p>KEGG: C03287</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_c" name="O2" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3309</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15379</p>
+ <p>KEGG: C00007</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_utp_c" name="UTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O15P3</p>
+ <p>PUBCHEM: 3375</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15713</p>
+ <p>KEGG: C00075</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dh4dglc_c" name="5-Dehydro-4-deoxy-D-glucarate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O7</p>
+ <p>PUBCHEM: 3948</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 42819</p>
+ <p>KEGG: C00679</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_e" name="O2" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3309</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15379</p>
+ <p>KEGG: C00007</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn2_ST_p" name="clpn2_ST_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhsk_c" name="3-Dehydroshikimate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O5</p>
+ <p>PUBCHEM: 5617</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30918</p>
+ <p>KEGG: C02637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_p" name="O2" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3309</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15379</p>
+ <p>KEGG: C00007</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trptrna_c" name="L-Tryptophanyl-tRNA-Trp" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H11N2OR</p>
+ <p>PUBCHEM: 6322</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29159</p>
+ <p>KEGG: C03512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acolipa_p" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="p" charge="-9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_btnso_c" name="d-biotin-d-sulfoxide" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O4S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddecg3p_p" name="2-dodecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H30O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acolipa_e" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="e" charge="-9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_u3aga_c" name="UDP-3-O-3-hydroxytetradecanoyl-N-acetylglucosamine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H51N3O19P2</p>
+ <p>PUBCHEM: 7309</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28131</p>
+ <p>KEGG: C04738</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddecg3p_c" name="2-dodecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H30O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unagamuf_c" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H126N3O22P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unagamuf_p" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H126N3O22P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp9Oag_p" name="Undecaprenyl-diphosphate-O-antigene-9x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C271H450O160P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_p" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pran_c" name="N-5-Phospho-D-ribosyl-anthranilate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H13NO9P</p>
+ <p>PUBCHEM: 6961</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 7091</p>
+ <p>KEGG: C04302</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_e" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt1p_c" name="Galactitol-1-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>PUBCHEM: 8547</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28663</p>
+ <p>KEGG: C06311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_c" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_c" name="H2O" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>PUBCHEM: 3303</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15377</p>
+ <p>KEGG: C00001</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_p" name="Hg2" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>PUBCHEM: 3970</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 16793</p>
+ <p>KEGG: C00703</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_e" name="H2O" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>PUBCHEM: 3303</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15377</p>
+ <p>KEGG: C00001</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnasecys_c" name="tRNA-SeCys" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe181_p" name="phosphatidylethanolamine-dioctadec-11-enoyl-n-C181" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H78N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_e" name="Nicotinate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>PUBCHEM: 3552</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15940</p>
+ <p>KEGG: C00253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_c" name="Nicotinate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>PUBCHEM: 3552</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15940</p>
+ <p>KEGG: C00253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_c" name="Hg2" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>PUBCHEM: 3970</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 16793</p>
+ <p>KEGG: C00703</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_p" name="H2O" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>PUBCHEM: 3303</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15377</p>
+ <p>KEGG: C00001</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_e" name="Hg2" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>PUBCHEM: 3970</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 16793</p>
+ <p>KEGG: C00703</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe181_c" name="phosphatidylethanolamine-dioctadec-11-enoyl-n-C181" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H78N1O8P1</p>
+ <p>PUBCHEM: 3643</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prlp_c" name="5-5-phospho-1-deoxyribulos-1-ylamino-methylideneamino-1-5-phosphoribosyl-imidazole-4-carboxamide" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O15P2</p>
+ <p>PUBCHEM: 7464</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27735</p>
+ <p>KEGG: C04916</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps161_c" name="phosphatidylserine-dihexadec-9-enoyl-n-C161" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69N1O10P1</p>
+ <p>PUBCHEM: 5698</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp181_p" name="Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_p" name="Maltotriose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>PUBCHEM: 4954</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 27931</p>
+ <p>KEGG: C01835</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp181_c" name="Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77O13P2</p>
+ <p>PUBCHEM: 6624</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_e" name="Maltotriose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>PUBCHEM: 4954</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 27931</p>
+ <p>KEGG: C01835</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbdrd_c" name="fused-thioldisulfide-interchange-protein-reduced" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_c" name="Maltotriose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>PUBCHEM: 4954</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 27931</p>
+ <p>KEGG: C01835</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_e" name="D-Glycerate-2-phosphate" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3904</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17835</p>
+ <p>KEGG: C00631</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr180_p" name="1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H76O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_c" name="D-Glycerate-2-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3904</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17835</p>
+ <p>KEGG: C00631</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hhcoa_c" name="S-3-Hydroxyhexanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N7O18P3S</p>
+ <p>PUBCHEM: 7655</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28276</p>
+ <p>KEGG: C05268</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ggagicolipa_c" name="glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C163H281N2O89P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_p" name="tetradecenoate-n-C141" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C87H139N7O23P2</p>
+ <p>PUBCHEM: 8185</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05897</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr180_c" name="1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H76O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_p" name="D-Glycerate-2-phosphate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3904</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17835</p>
+ <p>KEGG: C00631</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glycogen_c" name="glycogen" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O5</p>
+ <p>PUBCHEM: 3482</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28087</p>
+ <p>KEGG: C00182</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_e" name="tetradecenoate-n-C141" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_c" name="tetradecenoate-n-C141" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_c" name="Glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 3393</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15978</p>
+ <p>KEGG: C00093</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_e" name="Glycerol-3-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 3393</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15978</p>
+ <p>KEGG: C00093</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_p" name="L-Threonine-O-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>PUBCHEM: 14294</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 37525</p>
+ <p>KEGG: C12147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4mpetz_c" name="4-Methyl-5-2-phosphoethyl-thiazole" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8NO4PS</p>
+ <p>PUBCHEM: 6980</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17857</p>
+ <p>KEGG: C04327</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succoa_c" name="Succinyl-CoA" compartment="c" charge="-5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>PUBCHEM: 3391</p>
+ <p>CHARGE: -5</p>
+ <p>CHEBI: 15380</p>
+ <p>KEGG: C00091</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddg6p_c" name="2-Dehydro-3-deoxy-D-gluconate-6-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O9P</p>
+ <p>PUBCHEM: 7071</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 15925</p>
+ <p>KEGG: C04442</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdtdec7eg_c" name="CDP-1-2-ditetradec-7-enoylglycerol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H67N3O15P2</p>
+ <p>PUBCHEM: 3567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_e" name="L-Threonine-O-3-phosphate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>PUBCHEM: 14294</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 37525</p>
+ <p>KEGG: C12147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_p" name="Glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 3393</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15978</p>
+ <p>KEGG: C00093</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_c" name="L-Threonine-O-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>PUBCHEM: 14294</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 37525</p>
+ <p>KEGG: C12147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_c" name="Shikimate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>PUBCHEM: 3776</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16119</p>
+ <p>KEGG: C00493</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1pyr5c_c" name="1-Pyrroline-5-carboxylate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6NO2</p>
+ <p>PUBCHEM: 6642</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 371</p>
+ <p>KEGG: C03912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_10fthf_c" name="10-Formyltetrahydrofolate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H21N7O7</p>
+ <p>PUBCHEM: 3533</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15637</p>
+ <p>KEGG: C00234</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_c" name="L-Idonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4032</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17796</p>
+ <p>KEGG: C00770</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_p" name="Decanoate-n-C100" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>PUBCHEM: 4728</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30813</p>
+ <p>KEGG: C01571</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_e" name="L-Idonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4032</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17796</p>
+ <p>KEGG: C00770</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xu5p__D_c" name="D-Xylulose-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 3530</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16332</p>
+ <p>KEGG: C00231</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ooctACP_c" name="3-Oxooctanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O9PRS</p>
+ <p>PUBCHEM: 8045</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05750</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt6p_c" name="D-Sorbitol-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>PUBCHEM: 4331</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17044</p>
+ <p>KEGG: C01096</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_e" name="Decanoate-n-C100" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>PUBCHEM: 4728</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30813</p>
+ <p>KEGG: C01571</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_p" name="L-Idonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4032</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17796</p>
+ <p>KEGG: C00770</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_c" name="Decanoate-n-C100" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>PUBCHEM: 4728</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30813</p>
+ <p>KEGG: C01571</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg140_c" name="acyl-phosphatidylglycerol-n-C140" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H92O11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ribflv_c" name="Riboflavin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H20N4O6</p>
+ <p>PUBCHEM: 3554</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17015</p>
+ <p>KEGG: C00255</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rbflvrd_c" name="Reduced-riboflavin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H22N4O6</p>
+ <p>PUBCHEM: 4252</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 8798</p>
+ <p>KEGG: C01007</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal__bD_p" name="beta-D-Galactose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4738</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28260</p>
+ <p>KEGG: C01582</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_e" name="gamma-butyrobetaine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>PUBCHEM: 4408</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1941</p>
+ <p>KEGG: C01181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c9palmeACP_c" name="trans-3-cis-9-palmitoleoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H47N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_p" name="Fe-enterobactin" compartment="p" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>PUBCHEM: 8473</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 28199</p>
+ <p>KEGG: C06230</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_e" name="Fe-enterobactin" compartment="e" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>PUBCHEM: 8473</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 28199</p>
+ <p>KEGG: C06230</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_c" name="Fe-enterobactin" compartment="c" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>PUBCHEM: 8473</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 28199</p>
+ <p>KEGG: C06230</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_p" name="gamma-butyrobetaine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>PUBCHEM: 4408</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1941</p>
+ <p>KEGG: C01181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdprmn_c" name="dTDP-L-rhamnose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H24N2O15P2</p>
+ <p>PUBCHEM: 6171</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15774</p>
+ <p>KEGG: C03319</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_25aics_c" name="S-2-5-Amino-1-5-phospho-D-ribosyl-imidazole-4-carboxamidosuccinate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H15N4O12P</p>
+ <p>PUBCHEM: 7384</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 18319</p>
+ <p>KEGG: C04823</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kphphhlipa_c" name="kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C139H241N2O70P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp14Oag_p" name="Undecaprenyl-diphosphate-O-antigene-14x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C391H650O245P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uaccg_c" name="UDP-N-acetyl-3-O-1-carboxyvinyl-D-glucosamine" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H26N3O19P2</p>
+ <p>PUBCHEM: 7220</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16435</p>
+ <p>KEGG: C04631</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_e" name="Hydrogen-sulfide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>PUBCHEM: 3578</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16136</p>
+ <p>KEGG: C00283</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_p" name="KDO-2-lipid-IV-A" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>PUBCHEM: 8297</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_c" name="Hydrogen-sulfide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>PUBCHEM: 3578</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16136</p>
+ <p>KEGG: C00283</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn180_p" name="cardiolipin-tetraoctadecanoyl-n-C180" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C81H156O17P2</p>
+ <p>PUBCHEM: 8259</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_c" name="KDO-2-lipid-IV-A" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>PUBCHEM: 8297</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_p" name="Hydrogen-sulfide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>PUBCHEM: 3578</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16136</p>
+ <p>KEGG: C00283</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_e" name="KDO-2-lipid-IV-A" compartment="e" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>PUBCHEM: 8297</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_e" name="Cu" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 49552</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_scl_c" name="sirohydrochlorin" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H39N4O16</p>
+ <p>PUBCHEM: 8073</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 18023</p>
+ <p>KEGG: C05778</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_c" name="Cu" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 49552</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4addg_c" name="dTDP-4-amino-4-6-dideoxy-D-galactose" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H26N3O14P2</p>
+ <p>PUBCHEM: 6932</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15952</p>
+ <p>KEGG: C04268</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lgt__S_c" name="R-S-Lactoylglutathione" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H20N3O8S</p>
+ <p>PUBCHEM: 6272</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15694</p>
+ <p>KEGG: C03451</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asptrna_c" name="L-Aspartyl-tRNA-Asp" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5NO3R</p>
+ <p>PUBCHEM: 5893</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29158</p>
+ <p>KEGG: C02984</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_p" name="Cu" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 49552</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_myrsACP_c" name="Myristoyl-ACP-n-C140ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H47N2O8PRS</p>
+ <p>PUBCHEM: 8056</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05761</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdtdecg_c" name="CDP-1-2-ditetradecanoylglycerol" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H71N3O15P2</p>
+ <p>PUBCHEM: 3567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_p" name="Ferrioxamine-B-fe" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mana_c" name="D-Mannonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 3797</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17767 33076</p>
+ <p>KEGG: C00514</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_manglyc_e" name="2-alpha-D-Mannosyl-D-glycerate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>PUBCHEM: 13711</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15847</p>
+ <p>KEGG: C11544</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hocoa_c" name="S-3-Hydroxyoctanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H46N7O18P3S</p>
+ <p>PUBCHEM: 7653</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28632</p>
+ <p>KEGG: C05266</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps140_c" name="phosphatidylserine-ditetradecanoyl-n-C140" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65N1O10P1</p>
+ <p>PUBCHEM: 5698</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_e" name="Ferrioxamine-B-fe" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_s_c" name="Sulfur" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: S</p>
+ <p>PUBCHEM: 3387</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17909</p>
+ <p>KEGG: C00087</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thf_c" name="5-6-7-8-Tetrahydrofolate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H21N7O6</p>
+ <p>PUBCHEM: 3401</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15635</p>
+ <p>KEGG: C00101</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_c" name="Ferrioxamine-B-fe" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhm_c" name="1-6-anhydrous-N-Acetylmuramate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16NO7</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctbtcoa_c" name="crotonobetainyl-CoA" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H44N8O17P3S</p>
+ <p>PUBCHEM: 591??6196</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28684</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_manglyc_p" name="2-alpha-D-Mannosyl-D-glycerate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>PUBCHEM: 13711</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15847</p>
+ <p>KEGG: C11544</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_p" name="Xanthosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>PUBCHEM: 4895</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18107</p>
+ <p>KEGG: C01762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg181_c" name="acyl-phosphatidylglycerol-n-C181" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H110O11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hddcoa_c" name="S-3-Hydroxydodecanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H54N7O18P3S</p>
+ <p>PUBCHEM: 7649</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 27668</p>
+ <p>KEGG: C05262</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_c" name="ferroxamine-minus-Fe-3" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3haACP_c" name="3R-3-Hydroxyacyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H27N2O9PRS</p>
+ <p>PUBCHEM: 4490</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01271</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum_e" name="N-Acetylmuramate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>PUBCHEM: 5676</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02713</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_c" name="Phenylpropanoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>PUBCHEM: 7943</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28631</p>
+ <p>KEGG: C05629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_e" name="Phenylpropanoate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>PUBCHEM: 7943</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28631</p>
+ <p>KEGG: C05629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_e" name="dUMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>PUBCHEM: 3656</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17622</p>
+ <p>KEGG: C00365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_p" name="Phenylpropanoate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>PUBCHEM: 7943</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28631</p>
+ <p>KEGG: C05629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdeACP_c" name="cis-hexadec-9-enoyl-acyl-carrier-protein-n-C161" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_e" name="dxyl_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8496</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28354</p>
+ <p>KEGG: C06257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_c" name="1-deoxy-D-xylulose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 8496</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28354</p>
+ <p>KEGG: C06257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sl26da_c" name="N-Succinyl-LL-2-6-diaminoheptanedioate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16N2O7</p>
+ <p>PUBCHEM: 7053</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17279</p>
+ <p>KEGG: C04421</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_p" name="dxyl_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8496</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28354</p>
+ <p>KEGG: C06257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_c" name="Thymine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>PUBCHEM: 3478</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17821</p>
+ <p>KEGG: C00178</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_c" name="N-Acetyl-D-glucosamine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3440</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17411</p>
+ <p>KEGG: C00140</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmanap_c" name="N-Acetyl-D-mannosamine-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 6922</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28273</p>
+ <p>KEGG: C04257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_p" name="dIMP" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>PUBCHEM: 8446</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28806</p>
+ <p>KEGG: C06196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ichor_c" name="Isochorismate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>PUBCHEM: 4141</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17582 29780</p>
+ <p>KEGG: C00885</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_p" name="Nitric-oxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>PUBCHEM: 3815</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16480</p>
+ <p>KEGG: C00533</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcmrs7eACP_c" name="R-3-hydroxy-cis-myristol-7-eoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_c" name="Ferrioxamine-G" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_e" name="Ferrioxamine-G" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_p" name="D-Ribose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3421</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 47013</p>
+ <p>KEGG: C00121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_e" name="Nitric-oxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>PUBCHEM: 3815</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16480</p>
+ <p>KEGG: C00533</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_c" name="dIMP" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>PUBCHEM: 8446</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28806</p>
+ <p>KEGG: C06196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_e" name="dIMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>PUBCHEM: 8446</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28806</p>
+ <p>KEGG: C06196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_c" name="Nitric-oxide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>PUBCHEM: 3815</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16480</p>
+ <p>KEGG: C00533</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_p" name="Ferrioxamine-G" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_e" name="D-Ribose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3421</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 47013</p>
+ <p>KEGG: C00121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_c" name="D-Ribose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3421</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 47013</p>
+ <p>KEGG: C00121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgdp_c" name="dGDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10P2</p>
+ <p>PUBCHEM: 3652</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28862</p>
+ <p>KEGG: C00361</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sertrna__sec___c" name="L-Seryl-tRNA-Sec" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO2R</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 13170</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnamet_c" name="tRNA-Met" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4796</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29173</p>
+ <p>KEGG: C01647</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbip_c" name="Adenosyl-cobinamide-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C58H83CoN16O14P</p>
+ <p>PUBCHEM: 8740</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 2481</p>
+ <p>KEGG: C06509</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_p" name="Thymine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>PUBCHEM: 3478</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17821</p>
+ <p>KEGG: C00178</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2oph_c" name="2-Octaprenylphenol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C46H70O</p>
+ <p>PUBCHEM: 8105</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 40407</p>
+ <p>KEGG: C05810</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_c" name="Thiamin" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>PUBCHEM: 3668</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18385</p>
+ <p>KEGG: C00378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpdp_p" name="Undecaprenyl-diphosphate" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O7P2</p>
+ <p>PUBCHEM: 6347</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17047</p>
+ <p>KEGG: C03543</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_e" name="Thiamin" compartment="e" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>PUBCHEM: 3668</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18385</p>
+ <p>KEGG: C00378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_c" name="Fe2" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 3325</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18248</p>
+ <p>KEGG: C00023</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnahis_c" name="tRNA-His" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4792</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29178</p>
+ <p>KEGG: C01643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_e" name="Fe2" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 3325</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18248</p>
+ <p>KEGG: C00023</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpdp_c" name="Undecaprenyl-diphosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O7P2</p>
+ <p>PUBCHEM: 6347</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17047</p>
+ <p>KEGG: C03543</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_p" name="Thiamin" compartment="p" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>PUBCHEM: 3668</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18385</p>
+ <p>KEGG: C00378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unagamu_c" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H113N2O18P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_p" name="Fe2" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 3325</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18248</p>
+ <p>KEGG: C00023</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_c" name="udcpo5_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tet_e" name="Tetrathionate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O6S4</p>
+ <p>PUBCHEM: 5169</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15226 16853</p>
+ <p>KEGG: C02084</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr120_c" name="1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H52O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_p" name="udcpo5_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp5Oag_p" name="Undecaprenyl-diphosphate-O-antigene-5x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C175H290O92P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr120_p" name="1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H52O5</p>
+ <p>PUBCHEM: 3914</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_c" name="L-Leucine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3423</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15603</p>
+ <p>KEGG: C00123</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_e" name="L-Leucine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3423</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15603</p>
+ <p>KEGG: C00123</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odec11eg3p_c" name="2-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H40O7P1</p>
+ <p>PUBCHEM: 6693</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg181_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_c" name="Adenosylcobalamin" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>PUBCHEM: 3494</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18408</p>
+ <p>KEGG: C00194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_e" name="Adenosylcobalamin" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>PUBCHEM: 3494</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18408</p>
+ <p>KEGG: C00194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_p" name="L-Leucine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3423</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15603</p>
+ <p>KEGG: C00123</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg181_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_p" name="Adenosylcobalamin" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>PUBCHEM: 3494</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18408</p>
+ <p>KEGG: C00194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_c" name="Deoxyguanosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3624</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17172</p>
+ <p>KEGG: C00330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppbng_c" name="Porphobilinogen" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O4</p>
+ <p>PUBCHEM: 4184</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17381</p>
+ <p>KEGG: C00931</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glntrna_c" name="L-Glutaminyl-tRNA-Gln" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9N2O2R</p>
+ <p>PUBCHEM: 5339</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29166</p>
+ <p>KEGG: C02282</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_e" name="Deoxyguanosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3624</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17172</p>
+ <p>KEGG: C00330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_c" name="Dodecanoate-n-C120" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>PUBCHEM: 5649</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30805</p>
+ <p>KEGG: C02679</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_e" name="Dodecanoate-n-C120" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>PUBCHEM: 5649</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30805</p>
+ <p>KEGG: C02679</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sheme_c" name="Siroheme" compartment="c" charge="-8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H36FeN4O16</p>
+ <p>PUBCHEM: 4010</p>
+ <p>CHARGE: -8</p>
+ <p>CHEBI: 28599</p>
+ <p>KEGG: C00748</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_p" name="Deoxyguanosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3624</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17172</p>
+ <p>KEGG: C00330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_p" name="Dodecanoate-n-C120" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>PUBCHEM: 5649</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30805</p>
+ <p>KEGG: C02679</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_e" name="Deoxyadenosine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>PUBCHEM: 3839</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17256</p>
+ <p>KEGG: C00559</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_histd_c" name="L-Histidinol" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N3O</p>
+ <p>PUBCHEM: 4117</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16255</p>
+ <p>KEGG: C00860</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3p_c" name="Glyceraldehyde-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O6P</p>
+ <p>PUBCHEM: 3930</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17138</p>
+ <p>KEGG: C00661</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_p" name="Shikimate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>PUBCHEM: 3776</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16119</p>
+ <p>KEGG: C00493</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_c" name="2-Dehydro-3-deoxy-D-gluconate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>PUBCHEM: 3504</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17032</p>
+ <p>KEGG: C00204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_e" name="2-Dehydro-3-deoxy-D-gluconate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>PUBCHEM: 3504</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17032</p>
+ <p>KEGG: C00204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hqn_c" name="Hydroquinone" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O2</p>
+ <p>PUBCHEM: 3812</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17594</p>
+ <p>KEGG: C00530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe180_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>PUBCHEM: 7069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_p" name="2-Dehydro-3-deoxy-D-gluconate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>PUBCHEM: 3504</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17032</p>
+ <p>KEGG: C00204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyceryl_prolpp_c" name="glyceryl_prolpp_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_e" name="Thymidine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>PUBCHEM: 3514</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17748</p>
+ <p>KEGG: C00214</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_c" name="Thymidine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>PUBCHEM: 3514</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17748</p>
+ <p>KEGG: C00214</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_grxox_c" name="glutaredoxin-oxidized" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_p" name="Thymidine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>PUBCHEM: 3514</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17748</p>
+ <p>KEGG: C00214</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_p" name="4-Hydroxyphenylacetate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>PUBCHEM: 3915</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18101</p>
+ <p>KEGG: C00642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glutrna_c" name="L-Glutamyl-tRNA-Glu" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7NO3R</p>
+ <p>PUBCHEM: 5896</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29157</p>
+ <p>KEGG: C02987</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmnman_c" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H120O21P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_c" name="4-Hydroxyphenylacetate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>PUBCHEM: 3915</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18101</p>
+ <p>KEGG: C00642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udp_c" name="UDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O12P2</p>
+ <p>PUBCHEM: 3317</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17659</p>
+ <p>KEGG: C00015</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_e" name="4-Hydroxyphenylacetate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>PUBCHEM: 3915</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18101</p>
+ <p>KEGG: C00642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butACP_c" name="Butyryl-ACP-n-C40ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H27N2O8PRS</p>
+ <p>PUBCHEM: 8040</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05745</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_p" name="salchs2fe_p" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fgam_c" name="N2-Formyl-N1-5-phospho-D-ribosyl-glycinamide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O9P</p>
+ <p>PUBCHEM: 7017</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18272</p>
+ <p>KEGG: C04376</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_e" name="salchs2fe_e" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_c" name="salchs2fe_c" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_e" name="Maltohexaose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 5041</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01936</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_c" name="Maltohexaose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 5041</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01936</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa160_p" name="1-2-dihexadecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H67O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_quln_c" name="Quinolinate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H3NO4</p>
+ <p>PUBCHEM: 6487</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16675</p>
+ <p>KEGG: C03722</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_p" name="Maltohexaose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 5041</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01936</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa160_c" name="1-2-dihexadecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H67O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg180_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp10Oag_p" name="Undecaprenyl-diphosphate-O-antigene-10x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C295H490O177P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_p" name="L-Methionine-Sulfoxide" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 5898</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17016</p>
+ <p>KEGG: C02989</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_p" name="ferroxamine-minus-Fe-3" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot5p_c" name="Orotidine-5-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10N2O11P</p>
+ <p>PUBCHEM: 4337</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 15842</p>
+ <p>KEGG: C01103</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4px4p_p" name="two-disacharide-linked-murein-units-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H112N14O39</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ssaltpp_c" name="Succinate-semialdehyde-thiamin-diphosphate-anion" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N4O10P2S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05816</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_c" name="L-Methionine-Sulfoxide" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 5898</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17016</p>
+ <p>KEGG: C02989</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_e" name="ferroxamine-minus-Fe-3" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_p" name="coprogen" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_e" name="L-Methionine-Sulfoxide" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 5898</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17016</p>
+ <p>KEGG: C02989</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but2eACP_c" name="But-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N2O8PRS</p>
+ <p>PUBCHEM: 6911</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04246</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdcoa_c" name="Tetradecanoyl-CoA-n-C140CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H58N7O17P3S</p>
+ <p>PUBCHEM: 5585</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15532</p>
+ <p>KEGG: C02593</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_e" name="N-Acetyl-D-glucosamine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3440</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17411</p>
+ <p>KEGG: C00140</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_q8h2_c" name="Ubiquinol-8" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H76O4</p>
+ <p>PUBCHEM: 3680</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17976</p>
+ <p>KEGG: C00390</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe141_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>PUBCHEM: 7069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_bglycogen_c" name="branching-glycogen" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O5</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcdp_c" name="dCDP" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O10P2</p>
+ <p>PUBCHEM: 3972</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00705</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaphe_c" name="tRNA-Phe" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4797</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29184</p>
+ <p>KEGG: C01648</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhdp_c" name="2-3-Dihydrodipicolinate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5NO4</p>
+ <p>PUBCHEM: 6183</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18042</p>
+ <p>KEGG: C03340</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_e" name="L-Cysteine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 3397</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17561</p>
+ <p>KEGG: C00097</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mcit_c" name="2-Methylcitrate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O7</p>
+ <p>PUBCHEM: 5290</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 10860 30836</p>
+ <p>KEGG: C02225</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_c" name="gamma-butyrobetaine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>PUBCHEM: 4408</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1941</p>
+ <p>KEGG: C01181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_p" name="L-Cysteine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 3397</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17561</p>
+ <p>KEGG: C00097</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_p" name="Deoxyadenosine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>PUBCHEM: 3839</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17256</p>
+ <p>KEGG: C00559</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppcoa_c" name="Propanoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H36N7O17P3S</p>
+ <p>PUBCHEM: 3400</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15539</p>
+ <p>KEGG: C00100</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_p" name="Fe-III-hydoxamate-unloaded" compartment="p" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6pgl_c" name="6-phospho-D-glucono-1-5-lactone" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O9P</p>
+ <p>PUBCHEM: 4457</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16938</p>
+ <p>KEGG: C01236</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_p" name="Glycine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>PUBCHEM: 3339</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15428</p>
+ <p>KEGG: C00037</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_c" name="Fe-III-hydoxamate-unloaded" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_e" name="Fe-III-hydoxamate-unloaded" compartment="e" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_e" name="Glycine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>PUBCHEM: 3339</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15428</p>
+ <p>KEGG: C00037</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg140_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_c" name="Glycine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>PUBCHEM: 3339</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15428</p>
+ <p>KEGG: C00037</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lald__D_c" name="D-Lactaldehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>PUBCHEM: 4189</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17167</p>
+ <p>KEGG: C00937</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_p" name="D-Galactonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4136</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 12931 16534</p>
+ <p>KEGG: C00880</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mcacn_c" name="cis-2-Methylaconitate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O6</p>
+ <p>PUBCHEM: 6896</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 16717</p>
+ <p>KEGG: C04225</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhap_c" name="Dihydroxyacetone-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O6P</p>
+ <p>PUBCHEM: 3411</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16108</p>
+ <p>KEGG: C00111</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_c" name="D-Galactonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4136</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 12931 16534</p>
+ <p>KEGG: C00880</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_e" name="D-Galactonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4136</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 12931 16534</p>
+ <p>KEGG: C00880</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcddec5eACP_c" name="R-3-hydroxy-cis-dodec-5-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lald__L_c" name="L-Lactaldehyde" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>PUBCHEM: 3714</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18041</p>
+ <p>KEGG: C00424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6pgc_c" name="6-Phospho-D-gluconate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O10P</p>
+ <p>PUBCHEM: 3638</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 48928</p>
+ <p>KEGG: C00345</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucsal_c" name="Succinic-semialdehyde" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>PUBCHEM: 3531</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16265</p>
+ <p>KEGG: C00232</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5px4p_p" name="two-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C77H117N15O40</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hbz_c" name="4-Hydroxybenzoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O3</p>
+ <p>PUBCHEM: 3456</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30763</p>
+ <p>KEGG: C00156</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthp_c" name="Maltoheptaose" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H72O36</p>
+ <p>PUBCHEM: 3037125??8462</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdec3eACP_c" name="cis-dec-3-enoyl-acyl-carrier-protein-n-C101" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O8PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_p" name="Chloride" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>PUBCHEM: 3415</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17996</p>
+ <p>KEGG: C00115</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dhp_c" name="2-Dehydropantoate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O4</p>
+ <p>PUBCHEM: 4217</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 11561 17094</p>
+ <p>KEGG: C00966</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgtp_c" name="dGTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O13P3</p>
+ <p>PUBCHEM: 3581</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16497</p>
+ <p>KEGG: C00286</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmnmanabe_p" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H130O24P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_appp_c" name="D-1-Aminopropan-2-ol-O-phosphate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO4P</p>
+ <p>PUBCHEM: 6809</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28390</p>
+ <p>KEGG: C04122</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa20Oag_e" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="e" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C656H1103N2O440P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps181_c" name="phosphatidylserine-dioctadec-11-enoyl-n-C181" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77N1O10P1</p>
+ <p>PUBCHEM: 5698</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa20Oag_p" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="p" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C656H1103N2O440P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_e" name="Chloride" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>PUBCHEM: 3415</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17996</p>
+ <p>KEGG: C00115</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_c" name="L-Aspartate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>PUBCHEM: 3351</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17053</p>
+ <p>KEGG: C00049</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_e" name="L-Aspartate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>PUBCHEM: 3351</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17053</p>
+ <p>KEGG: C00049</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tagdp__D_c" name="D-Tagatose-1-6-biphosphate" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O12P2</p>
+ <p>PUBCHEM: 6535</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 4250</p>
+ <p>KEGG: C03785</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg181_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_p" name="L-Aspartate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>PUBCHEM: 3351</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17053</p>
+ <p>KEGG: C00049</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx5p_c" name="Pyridoxal-5-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8NO6P</p>
+ <p>PUBCHEM: 3320</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18405</p>
+ <p>KEGG: C00018</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sl2a6o_c" name="N-Succinyl-2-L-amino-6-oxoheptanedioate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO8</p>
+ <p>PUBCHEM: 7087</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 35266</p>
+ <p>KEGG: C04462</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ppcys_c" name="N--R-4-Phosphopantothenoyl-L-cysteine" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H20N2O9PS</p>
+ <p>PUBCHEM: 7001</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 15769</p>
+ <p>KEGG: C04352</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6hmhptpp_c" name="6-hydroxymethyl-dihydropterin-pyrophosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8N5O8P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hemeO_c" name="Heme-O" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H56FeN4O5</p>
+ <p>PUBCHEM: 47204998</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15672</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hdecACP_c" name="R-3-Hydroxydecanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39N2O9PRS</p>
+ <p>PUBCHEM: 7209</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04619</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odecg3p_p" name="1-octadecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H41O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucr_p" name="Sucrose" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3389</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17992</p>
+ <p>KEGG: C00089</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_datp_c" name="dATP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O12P3</p>
+ <p>PUBCHEM: 3431</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16284</p>
+ <p>KEGG: C00131</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odecg3p_c" name="1-octadecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H41O7P1</p>
+ <p>PUBCHEM: 3950</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucr_e" name="Sucrose" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3389</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17992</p>
+ <p>KEGG: C00089</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3sala_c" name="3-Sulfino-L-alanine" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5NO4S</p>
+ <p>PUBCHEM: 3881</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16345</p>
+ <p>KEGG: C00606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa120_p" name="1-2-didodecanoyl-sn-glycerol-3-phosphate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhgulnp_c" name="3-keto-L-gulonate-6-phosphate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C14899</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa120_c" name="1-2-didodecanoyl-sn-glycerol-3-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51O8P1</p>
+ <p>PUBCHEM: 3706</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhguln_c" name="3-Dehydro-L-gulonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3892</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16142</p>
+ <p>KEGG: C00618</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hhexACP_c" name="R-3-Hydroxyhexanoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31N2O9PRS</p>
+ <p>PUBCHEM: 8042</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05747</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcvac11eACP_c" name="R-3-hydroxy-cis-vacc-11-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O9PRS</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2kmb_c" name="2-keto-4-methylthiobutyrate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O3S</p>
+ <p>PUBCHEM: 5611</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17275</p>
+ <p>KEGG: C01180</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdpglu_c" name="dTDPglucose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H24N2O16P2</p>
+ <p>PUBCHEM: 4099</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15700</p>
+ <p>KEGG: C00842</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg141_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg141_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_e" name="L-Histidine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>PUBCHEM: 3435</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15971</p>
+ <p>KEGG: C00135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddcaACP_c" name="Dodecanoyl-ACP-n-C120ACP" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H43N2O8PRS</p>
+ <p>PUBCHEM: 7620</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05223</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn140_p" name="cardiolipin-tetratetradecanoyl-n-C140" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C65H124O17P2</p>
+ <p>PUBCHEM: 8259</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_c" name="Oxidized-glutathione" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>PUBCHEM: 3427</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17858</p>
+ <p>KEGG: C00127</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydam_c" name="Pyridoxamine" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O2</p>
+ <p>PUBCHEM: 3816</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16410</p>
+ <p>KEGG: C00534</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_e" name="IMP" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>PUBCHEM: 3430</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17202</p>
+ <p>KEGG: C00130</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhm4p_c" name="1-6-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N6O15</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppoh_c" name="1-Propanol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O1</p>
+ <p>PUBCHEM: 8258</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28831</p>
+ <p>KEGG: C05979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_e" name="ferric-2-3-dihydroxybenzoylserine" compartment="e" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_c" name="ferric-2-3-dihydroxybenzoylserine" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe160_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prbatp_c" name="1-5-Phosphoribosyl-ATP" compartment="c" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O20P4</p>
+ <p>PUBCHEM: 5699</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 18263</p>
+ <p>KEGG: C02739</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg160_p" name="Phosphatidylglycerol-dihexadecanoyl-n-C160" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H74O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hx2coa_c" name="trans-Hex-2-enoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H40N7O17P3S</p>
+ <p>PUBCHEM: 7658</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28706</p>
+ <p>KEGG: C05271</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe160_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>PUBCHEM: 8253</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_p" name="ferric-2-3-dihydroxybenzoylserine" compartment="p" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ametam_c" name="S-Adenosylmethioninamine" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H24N6O3S</p>
+ <p>PUBCHEM: 4368</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 15625</p>
+ <p>KEGG: C01137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg160_c" name="Phosphatidylglycerol-dihexadecanoyl-n-C160" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H74O10P1</p>
+ <p>PUBCHEM: 3637</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_c" name="Glycolate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>PUBCHEM: 3460</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17497</p>
+ <p>KEGG: C00160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_e" name="Glycolate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>PUBCHEM: 3460</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17497</p>
+ <p>KEGG: C00160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_e" name="2-Aminoethylphosphonate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>PUBCHEM: 6353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15573</p>
+ <p>KEGG: C03557</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_c" name="2-Aminoethylphosphonate" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>PUBCHEM: 6353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15573</p>
+ <p>KEGG: C03557</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_p" name="Glycolate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>PUBCHEM: 3460</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17497</p>
+ <p>KEGG: C00160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_p" name="2-Aminoethylphosphonate" compartment="p" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>PUBCHEM: 6353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15573</p>
+ <p>KEGG: C03557</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_c" name="2-Oxoglutarate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>PUBCHEM: 3328</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30915</p>
+ <p>KEGG: C00026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm4p_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H57N7O20</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_e" name="2-Oxoglutarate" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>PUBCHEM: 3328</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30915</p>
+ <p>KEGG: C00026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2omhmbl_c" name="2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1-4-benzoquinol" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H74O4</p>
+ <p>PUBCHEM: 8110</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 27688</p>
+ <p>KEGG: C05815</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_c" name="Deoxyadenosine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>PUBCHEM: 3839</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17256</p>
+ <p>KEGG: C00559</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_p" name="2-Oxoglutarate" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>PUBCHEM: 3328</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30915</p>
+ <p>KEGG: C00026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm4p_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H57N7O20</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_toct2eACP_c" name="trans-Oct-2-enoyl-acyl-carrier-protein" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O8PRS</p>
+ <p>PUBCHEM: 8046</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05751</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_p" name="1-4-alpha-D-glucan" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3c2hmp_c" name="3-Carboxy-2-hydroxy-4-methylpentanoate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O5</p>
+ <p>PUBCHEM: 7045</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 35121</p>
+ <p>KEGG: C04411</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enlipa_e" name="phosphoethanolamine-KDO-2-lipid-A" compartment="e" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnatyr_c" name="tRNA-Tyr" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4045</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29182</p>
+ <p>KEGG: C00787</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_c" name="1-4-alpha-D-glucan" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_e" name="1-4-alpha-D-glucan" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enlipa_p" name="phosphoethanolamine-KDO-2-lipid-A" compartment="p" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hacolipa_e" name="hepta-acylated-core-oligosaccharide-lipid-A-E-coli" compartment="e" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C192H333N2O101P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp8Oag_p" name="Undecaprenyl-diphosphate-O-antigene-8x" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C247H410O143P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucbz_c" name="o-Succinylbenzoate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H8O5</p>
+ <p>PUBCHEM: 5692</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18325</p>
+ <p>KEGG: C02730</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg120_c" name="acyl-phosphatidylglycerol-n-C120" compartment="c" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H80O11P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam6p_c" name="N-Acetyl-D-glucosamine-6-phosphate" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 3650</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15784</p>
+ <p>KEGG: C00357</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_p" name="D-Methionine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>PUBCHEM: 4112</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16867</p>
+ <p>KEGG: C00855</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_e" name="D-Methionine" compartment="e" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>PUBCHEM: 4112</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16867</p>
+ <p>KEGG: C00855</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_c" name="D-Methionine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>PUBCHEM: 4112</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16867</p>
+ <p>KEGG: C00855</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_e" name="Nitrate" compartment="e" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>PUBCHEM: 3543</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 48107</p>
+ <p>KEGG: C00244</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_iletrna_c" name="L-Isoleucyl-tRNA-Ile" compartment="c" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12NOR</p>
+ <p>PUBCHEM: 6020</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29160</p>
+ <p>KEGG: C03127</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3cmp_p" name="3-cmp" compartment="p" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 8117</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05822</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5c2o3ed_c" name="5-Carboxy-2-oxohept-3-enedioate" compartment="c" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H5O7</p>
+ <p>PUBCHEM: 6753</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 15924</p>
+ <p>KEGG: C04052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaser_c" name="tRNA-Ser" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>PUBCHEM: 4799</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29179</p>
+ <p>KEGG: C01650</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3cmp_e" name="3-cmp" compartment="e" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 8117</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05822</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n8aspmd_c" name="N8-Acetylspermidine" compartment="c" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H23N3O</p>
+ <p>PUBCHEM: 4273</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 27911</p>
+ <p>KEGG: C01029</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbgox_p" name="periplasmic-disulfide-isomerasethiol-disulphide-oxidase-oxidized" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgalfur_c" name="UDP-D-galacto-1-4-furanose" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 6496</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18251</p>
+ <p>KEGG: C03733</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucgsa_c" name="N2-Succinyl-L-glutamate-5-semialdehyde" compartment="c" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO6</p>
+ <p>PUBCHEM: 8220</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 27657</p>
+ <p>KEGG: C05932</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acorn_c" name="N2-Acetyl-L-ornithine" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O3</p>
+ <p>PUBCHEM: 3726</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16543</p>
+ <p>KEGG: C00437</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl6b_c" name="Cobalt-precorrin-6b" compartment="c" charge="-7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H47CoN4O16</p>
+ <p>PUBCHEM: 13710</p>
+ <p>CHARGE: -7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11543</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dmmq8_c" name="2-Demethylmenaquinone-8" compartment="c" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C50H70O2</p>
+ <p>PUBCHEM: 8113</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28192</p>
+ <p>KEGG: C05818</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dctp_c" name="dCTP" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O13P3</p>
+ <p>PUBCHEM: 3742</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 16311</p>
+ <p>KEGG: C00458</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_p" name="O-Acetyl-L-serine" compartment="p" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>PUBCHEM: 4228</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17981</p>
+ <p>KEGG: C00979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdd2coa_c" name="trans-Hexadec-2-enoyl-CoA" compartment="c" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O17P3S</p>
+ <p>PUBCHEM: 7659</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 28935</p>
+ <p>KEGG: C05272</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hba_c_boundary" name="4-Hydroxy-benzyl-alcohol" compartment="c" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O2</p>
+ <p>PUBCHEM: 125??3480</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 30746</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5drib_c_boundary" name="5-deoxyribose" compartment="c" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 3449</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmfurn_c_boundary" name="4-hydroxy-5-methyl-3-2H-furanone" compartment="c" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6O3</p>
+ <p>PUBCHEM: 4564493??3441</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 11851 16530</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oxam_c_boundary" name="Oxamate" compartment="c" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2NO3</p>
+ <p>PUBCHEM: 4622</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18058</p>
+ <p>KEGG: C01444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chitob_e_boundary" name="Chitobiose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H28N2O11</p>
+ <p>PUBCHEM: 4818</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01674</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_e_boundary" name="Pyridoxine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>PUBCHEM: 3608</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16709</p>
+ <p>KEGG: C00314</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_e_boundary" name="Pyridoxal" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>PUBCHEM: 3549</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17310</p>
+ <p>KEGG: C00250</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_e_boundary" name="R-Propane-1-2-diol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5836</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28972</p>
+ <p>KEGG: C02912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_e_boundary" name="S-Propane-1-2-diol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5840</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29002</p>
+ <p>KEGG: C02917</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_e_boundary" name="1-4-alpha-D-glucan" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00912</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_e_boundary" name="1-5-Diaminopentane" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>PUBCHEM: 4816</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18127</p>
+ <p>KEGG: C01672</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23camp_e_boundary" name="2-3-Cyclic-AMP" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>PUBCHEM: 5400</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ccmp_e_boundary" name="2-3-Cyclic-CMP" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>PUBCHEM: 5401</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cgmp_e_boundary" name="2-3-Cyclic-GMP" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>PUBCHEM: 8444</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cump_e_boundary" name="2-3-Cyclic-UMP" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>PUBCHEM: 5402</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02355</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_e_boundary" name="2-3-diaminopropionate" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>PUBCHEM: 8629</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18383</p>
+ <p>KEGG: C06393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_e_boundary" name="meso-2-6-Diaminoheptanedioate" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>PUBCHEM: 3949</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16488 30308</p>
+ <p>KEGG: C00680</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_e_boundary" name="2-Dehydro-3-deoxy-D-gluconate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>PUBCHEM: 3504</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17032</p>
+ <p>KEGG: C00204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpac_e_boundary" name="3-4-Dihydroxyphenylacetaldehyde" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>PUBCHEM: 6744</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3amp_e_boundary" name="3-AMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 4566</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28931</p>
+ <p>KEGG: C01367</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3cmp_e_boundary" name="3-cmp" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 8117</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05822</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3gmp_e_boundary" name="3-GMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 8443</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06193</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_e_boundary" name="3-hydroxycinnamic-acid" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpppn_e_boundary" name="3-3-hydroxy-phenyl-propionate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ump_e_boundary" name="3-UMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 4567</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28895</p>
+ <p>KEGG: C01368</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_e_boundary" name="4-Aminobutanoate" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>PUBCHEM: 3628</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16865</p>
+ <p>KEGG: C00334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_e_boundary" name="4-Hydroxyphenylacetaldehyde" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>PUBCHEM: 6521</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15621</p>
+ <p>KEGG: C03765</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_e_boundary" name="5-Dehydro-D-gluconate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4301</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17426</p>
+ <p>KEGG: C01062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_e_boundary" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_e_boundary" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_e_boundary" name="Acetate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>PUBCHEM: 3335</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15366</p>
+ <p>KEGG: C00033</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acac_e_boundary" name="Acetoacetate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>PUBCHEM: 3464</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00164</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_e_boundary" name="Acetaldehyde" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>PUBCHEM: 3384</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15343</p>
+ <p>KEGG: C00084</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal1p_e_boundary" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal_e_boundary" name="N-Acetyl-D-galactosamine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 4363</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28037</p>
+ <p>KEGG: C01132</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_e_boundary" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 6921</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 7125</p>
+ <p>KEGG: C04256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_e_boundary" name="N-Acetyl-D-glucosamine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3440</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17411</p>
+ <p>KEGG: C00140</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_e_boundary" name="N-Acetyl-D-mannosamine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3918</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17122</p>
+ <p>KEGG: C00645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum_e_boundary" name="N-Acetylmuramate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>PUBCHEM: 5676</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02713</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_e_boundary" name="N-Acetylneuraminate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>PUBCHEM: 3568</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17012</p>
+ <p>KEGG: C00270</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acolipa_e_boundary" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="e" boundaryCondition="true" charge="-9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_e_boundary" name="O-Acetyl-L-serine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>PUBCHEM: 4228</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17981</p>
+ <p>KEGG: C00979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_e_boundary" name="Adenine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>PUBCHEM: 3447</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16708</p>
+ <p>KEGG: C00147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_e_boundary" name="Adenosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3512</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16335</p>
+ <p>KEGG: C00212</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_e_boundary" name="Adenosylcobalamin" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>PUBCHEM: 3494</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18408</p>
+ <p>KEGG: C00194</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ag_e_boundary" name="silver" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ag</p>
+ <p>PUBCHEM: 8935</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 9141</p>
+ <p>KEGG: C06710</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_e_boundary" name="Agmatine" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>PUBCHEM: 3479</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17431</p>
+ <p>KEGG: C00179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_e_boundary" name="2-Oxoglutarate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>PUBCHEM: 3328</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30915</p>
+ <p>KEGG: C00026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_e_boundary" name="beta-Alanine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3399</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16958</p>
+ <p>KEGG: C00099</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_e_boundary" name="D-Alanine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3433</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15570</p>
+ <p>KEGG: C00133</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_e_boundary" name="L-Alanine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3343</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16977</p>
+ <p>KEGG: C00041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_e_boundary" name="D-Alanyl-D-alanine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>PUBCHEM: 4239</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16576</p>
+ <p>KEGG: C00993</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_all__D_e_boundary" name="D-Allose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4657</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4093</p>
+ <p>KEGG: C01487</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_e_boundary" name="Allantoin" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>PUBCHEM: 4709</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15676</p>
+ <p>KEGG: C01551</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_e_boundary" name="AMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3322</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16027</p>
+ <p>KEGG: C00020</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_e_boundary" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_e_boundary" name="L-Arabinose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3558</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17535</p>
+ <p>KEGG: C00259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_e_boundary" name="aerobactin-minus-Fe3" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_e_boundary" name="Aerobactin" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>PUBCHEM: 7887</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18157</p>
+ <p>KEGG: C05554</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_e_boundary" name="L-Arginine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>PUBCHEM: 3362</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16467</p>
+ <p>KEGG: C00062</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb__L_e_boundary" name="L-Ascorbate" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>PUBCHEM: 3372</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 29073 38290</p>
+ <p>KEGG: C00072</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_e_boundary" name="L-Asparagine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>PUBCHEM: 3452</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17196</p>
+ <p>KEGG: C00152</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aso3_e_boundary" name="arsenite" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>PUBCHEM: 8922</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 29866</p>
+ <p>KEGG: C06697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_e_boundary" name="L-Aspartate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>PUBCHEM: 3351</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17053</p>
+ <p>KEGG: C00049</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but_e_boundary" name="Butyrate-n-C40" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>PUBCHEM: 3545</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30772</p>
+ <p>KEGG: C00246</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butso3_e_boundary" name="butanesulfonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_e_boundary" name="Calcium" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>PUBCHEM: 3376</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29108</p>
+ <p>KEGG: C00076</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_e_boundary" name="Cobinamide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>PUBCHEM: 8069</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28956</p>
+ <p>KEGG: C05774</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_e_boundary" name="Cob-I-alamin" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>PUBCHEM: 4110</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15982</p>
+ <p>KEGG: C00853</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_e_boundary" name="Cadmium" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>PUBCHEM: 4601</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 48775</p>
+ <p>KEGG: C01413</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_e_boundary" name="Cys-Gly" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>PUBCHEM: 4606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4047</p>
+ <p>KEGG: C01419</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_e_boundary" name="Choline" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>PUBCHEM: 3414</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15354</p>
+ <p>KEGG: C00114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_e_boundary" name="Citrate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3458</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: C00158</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_e_boundary" name="Isocitrate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3605</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 30887</p>
+ <p>KEGG: C00311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_e_boundary" name="cis-Aconitate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>PUBCHEM: 3707</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 32805</p>
+ <p>KEGG: C00417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_e_boundary" name="Chloride" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>PUBCHEM: 3415</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17996</p>
+ <p>KEGG: C00115</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_e_boundary" name="CMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 3357</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17361</p>
+ <p>KEGG: C00055</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_e_boundary" name="CO2" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>PUBCHEM: 3313</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16526</p>
+ <p>KEGG: C00011</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_e_boundary" name="Co2" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>PUBCHEM: 3475</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 27638</p>
+ <p>KEGG: C00175</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_e_boundary" name="core-oligosaccharide-lipid-A" compartment="e" boundaryCondition="true" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_e_boundary" name="coprogen" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_e_boundary" name="coprogen-unloaded-no-Fe-III-" compartment="e" boundaryCondition="true" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_e_boundary" name="L-Carnitine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>PUBCHEM: 3612</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16347</p>
+ <p>KEGG: C00318</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_e_boundary" name="Cytosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>PUBCHEM: 3670</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16040</p>
+ <p>KEGG: C00380</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_e_boundary" name="Cu2" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 3370</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28694</p>
+ <p>KEGG: C00070</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_e_boundary" name="Cu" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 49552</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_e_boundary" name="Hydrogen-cyanide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>PUBCHEM: 4537</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18407</p>
+ <p>KEGG: C01326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cynt_e_boundary" name="Cyanate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>PUBCHEM: 4604</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28024</p>
+ <p>KEGG: C01417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__D_e_boundary" name="D-Cysteine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 4051</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16375</p>
+ <p>KEGG: C00793</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_e_boundary" name="L-Cysteine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 3397</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17561</p>
+ <p>KEGG: C00097</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_e_boundary" name="L-Cystine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>PUBCHEM: 3774</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16283</p>
+ <p>KEGG: C00491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_e_boundary" name="Cytidine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>PUBCHEM: 3758</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17562</p>
+ <p>KEGG: C00475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_e_boundary" name="Deoxyadenosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>PUBCHEM: 3839</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17256</p>
+ <p>KEGG: C00559</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_e_boundary" name="dAMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>PUBCHEM: 3651</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17713</p>
+ <p>KEGG: C00360</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_e_boundary" name="Decanoate-n-C100" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>PUBCHEM: 4728</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30813</p>
+ <p>KEGG: C01571</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_e_boundary" name="dCMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>PUBCHEM: 3538</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15918</p>
+ <p>KEGG: C00239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_e_boundary" name="Deoxycytidine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>PUBCHEM: 4137</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15698</p>
+ <p>KEGG: C00881</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_e_boundary" name="Dodecanoate-n-C120" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>PUBCHEM: 5649</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30805</p>
+ <p>KEGG: C02679</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_e_boundary" name="dGMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3653</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16192</p>
+ <p>KEGG: C00362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_e_boundary" name="Deoxyguanosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3624</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17172</p>
+ <p>KEGG: C00330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_e_boundary" name="Dihydroxyacetone" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3484</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16016</p>
+ <p>KEGG: C00184</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_e_boundary" name="dIMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>PUBCHEM: 8446</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 28806</p>
+ <p>KEGG: C06196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_e_boundary" name="Deoxyinosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>PUBCHEM: 7859</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28997</p>
+ <p>KEGG: C05512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dms_e_boundary" name="Dimethyl-sulfide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>PUBCHEM: 3859</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17437</p>
+ <p>KEGG: C00580</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmso_e_boundary" name="Dimethyl-sulfoxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>PUBCHEM: 13325</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28262</p>
+ <p>KEGG: C11143</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dopa_e_boundary" name="Dopamine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>PUBCHEM: 6517</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18243</p>
+ <p>KEGG: C03758</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_e_boundary" name="dTMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>PUBCHEM: 3655</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17013</p>
+ <p>KEGG: C00364</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_e_boundary" name="dUMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>PUBCHEM: 3656</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17622</p>
+ <p>KEGG: C00365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_e_boundary" name="Deoxyuridine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>PUBCHEM: 3809</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16450</p>
+ <p>KEGG: C00526</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_e_boundary" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="e" boundaryCondition="true" charge="-15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -15</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enlipa_e_boundary" name="phosphoethanolamine-KDO-2-lipid-A" compartment="e" boundaryCondition="true" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_e_boundary" name="Enterochelin" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>PUBCHEM: 8116</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28855</p>
+ <p>KEGG: C05821</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_e_boundary" name="Ethanolamine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>PUBCHEM: 3489</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 16000</p>
+ <p>KEGG: C00189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ethso3_e_boundary" name="ethanesulfonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_e_boundary" name="Ethanol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>PUBCHEM: 3752</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16236</p>
+ <p>KEGG: C00469</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_e_boundary" name="D-Fructose-6-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3385</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: C00085</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_e_boundary" name="Formaldehyde" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>PUBCHEM: 3367</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16842</p>
+ <p>KEGG: C00067</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_e_boundary" name="Fe2" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 3325</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18248</p>
+ <p>KEGG: C00023</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_e_boundary" name="Fe3" compartment="e" boundaryCondition="true" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 14819</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dcit_e_boundary" name="Fe-III-dicitrate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H10FeO14</p>
+ <p>PUBCHEM: 8472</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06229</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_e_boundary" name="ferric-2-3-dihydroxybenzoylserine" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_e_boundary" name="Fe-III-hydroxamate" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>PUBCHEM: 8470</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06227</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_e_boundary" name="Fe-III-hydoxamate-unloaded" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_e_boundary" name="Ferrichrome" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>PUBCHEM: 8471</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_e_boundary" name="Ferrichrome-minus-Fe-III" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_e_boundary" name="Fe-enterobactin" compartment="e" boundaryCondition="true" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>PUBCHEM: 8473</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 28199</p>
+ <p>KEGG: C06230</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_e_boundary" name="ferroxamine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>PUBCHEM: 9799</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C07597</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_e_boundary" name="ferroxamine-minus-Fe-3" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_e_boundary" name="Formate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>PUBCHEM: 3358</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30751</p>
+ <p>KEGG: C00058</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_e_boundary" name="D-Fructose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3395</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15824</p>
+ <p>KEGG: C00095</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frulys_e_boundary" name="fructoselysine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 47205784</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_e_boundary" name="D-Fructuronate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4160</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4126</p>
+ <p>KEGG: C00905</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_e_boundary" name="L-Fucose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 4264</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 2181</p>
+ <p>KEGG: C01019</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_e_boundary" name="Fumarate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>PUBCHEM: 3422</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18012</p>
+ <p>KEGG: C00122</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_e_boundary" name="D-Glucose-1-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3403</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16077 29042</p>
+ <p>KEGG: C00103</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_e_boundary" name="sn-Glycero-3-phosphocholine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>PUBCHEM: 3939</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16870</p>
+ <p>KEGG: C00670</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_e_boundary" name="sn-Glycero-3-phosphoethanolamine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>PUBCHEM: 4454</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01233</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_e_boundary" name="Glycerophosphoglycerol" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>PUBCHEM: 6135</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03274</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_e_boundary" name="sn-Glycero-3-phospho-1-inositol" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>PUBCHEM: 4447</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18321</p>
+ <p>KEGG: C01225</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_e_boundary" name="Glycerophosphoserine" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3081457</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_e_boundary" name="D-Glucose-6-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3392</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 4170</p>
+ <p>KEGG: C00092</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_e_boundary" name="alpha-D-Galactose-1-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3734</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17973</p>
+ <p>KEGG: C00446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal__bD_e_boundary" name="beta-D-Galactose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4738</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28260</p>
+ <p>KEGG: C01582</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_e_boundary" name="D-Galactose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3424</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4139</p>
+ <p>KEGG: C00124</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_e_boundary" name="D-Galactarate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4135</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00879</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_e_boundary" name="D-Galactonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4136</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 12931 16534</p>
+ <p>KEGG: C00880</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__L_e_boundary" name="L-Galactonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 47205248</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15930</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt_e_boundary" name="Galactitol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4837</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16813</p>
+ <p>KEGG: C01697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_e_boundary" name="D-Galacturonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3627</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_e_boundary" name="D-Glucosamine-6-phosphate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3645</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15873</p>
+ <p>KEGG: C00352</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam_e_boundary" name="D-Glucosamine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>PUBCHEM: 3623</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 47977</p>
+ <p>KEGG: C00329</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_e_boundary" name="gamma-butyrobetaine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>PUBCHEM: 4408</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 1941</p>
+ <p>KEGG: C01181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_e_boundary" name="GDP" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>PUBCHEM: 3337</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17552</p>
+ <p>KEGG: C00035</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_e_boundary" name="D-Glucose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3333</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4167</p>
+ <p>KEGG: C00031</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_e_boundary" name="D-Gluconate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 3556</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 33198</p>
+ <p>KEGG: C00257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_e_boundary" name="D-Glucarate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4076</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16002</p>
+ <p>KEGG: C00818</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur1p_e_boundary" name="D-Glucuronate-1-phosphate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>PUBCHEM: 7759</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 28547</p>
+ <p>KEGG: C05385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_e_boundary" name="D-Glucuronate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3491</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 4178 47952</p>
+ <p>KEGG: C00191</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_e_boundary" name="L-Glutamine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>PUBCHEM: 3364</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18050</p>
+ <p>KEGG: C00064</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_e_boundary" name="L-Glutamate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>PUBCHEM: 3327</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16015</p>
+ <p>KEGG: C00025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_e_boundary" name="Glycine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>PUBCHEM: 3339</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15428</p>
+ <p>KEGG: C00037</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_e_boundary" name="D-Glyceraldehyde" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3856</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17378</p>
+ <p>KEGG: C00577</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_e_boundary" name="Glycine-betaine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3985</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17750</p>
+ <p>KEGG: C00719</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc2p_e_boundary" name="Glycerol-2-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 5889</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17270</p>
+ <p>KEGG: C02979</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_e_boundary" name="Glycerol-3-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 3393</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15978</p>
+ <p>KEGG: C00093</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_e_boundary" name="R-Glycerate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>PUBCHEM: 3557</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32398</p>
+ <p>KEGG: C00258</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_e_boundary" name="Glycerol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>PUBCHEM: 3416</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17754</p>
+ <p>KEGG: C00116</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_e_boundary" name="Glycolate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>PUBCHEM: 3460</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17497</p>
+ <p>KEGG: C00160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_e_boundary" name="GMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 3444</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17345</p>
+ <p>KEGG: C00144</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_e_boundary" name="Guanosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>PUBCHEM: 3677</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16750</p>
+ <p>KEGG: C00387</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_e_boundary" name="Oxidized-glutathione" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>PUBCHEM: 3427</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17858</p>
+ <p>KEGG: C00127</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_e_boundary" name="Reduced-glutathione" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>PUBCHEM: 3353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16856</p>
+ <p>KEGG: C00051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_e_boundary" name="GTP" compartment="e" boundaryCondition="true" charge="-4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>PUBCHEM: 3346</p>
+ <p>CHARGE: -4</p>
+ <p>CHEBI: 15996</p>
+ <p>KEGG: C00044</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_e_boundary" name="Guanine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>PUBCHEM: 3541</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16235</p>
+ <p>KEGG: C00242</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_e_boundary" name="H2" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>PUBCHEM: 3577</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18276</p>
+ <p>KEGG: C00282</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_e_boundary" name="Hydrogen-peroxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>PUBCHEM: 3329</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16240</p>
+ <p>KEGG: C00027</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_e_boundary" name="H2O" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>PUBCHEM: 3303</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15377</p>
+ <p>KEGG: C00001</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_e_boundary" name="Hydrogen-sulfide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>PUBCHEM: 3578</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16136</p>
+ <p>KEGG: C00283</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_e_boundary" name="H" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>PUBCHEM: 3380</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15378</p>
+ <p>KEGG: C00080</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hacolipa_e_boundary" name="hepta-acylated-core-oligosaccharide-lipid-A-E-coli" compartment="e" boundaryCondition="true" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C192H333N2O101P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_halipa_e_boundary" name="hepta-acylated-KDO-2-lipid-A" compartment="e" boundaryCondition="true" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C126H226N2O40P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_e_boundary" name="Hexadecanoate-n-C160" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_e_boundary" name="Hexadecenoate-n-C161" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_e_boundary" name="Hg2" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>PUBCHEM: 3970</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 16793</p>
+ <p>KEGG: C00703</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_e_boundary" name="L-Histidine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>PUBCHEM: 3435</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15971</p>
+ <p>KEGG: C00135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_e_boundary" name="L-Homoserine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3561</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15699</p>
+ <p>KEGG: C00263</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_e_boundary" name="Hexanoate-n-C60" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>PUBCHEM: 4740</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30776</p>
+ <p>KEGG: C01585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_e_boundary" name="Hypoxanthine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>PUBCHEM: 3560</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17368</p>
+ <p>KEGG: C00262</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_e_boundary" name="L-Idonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4032</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 17796</p>
+ <p>KEGG: C00770</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_e_boundary" name="L-Isoleucine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3697</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17191</p>
+ <p>KEGG: C00407</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_e_boundary" name="IMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>PUBCHEM: 3430</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17202</p>
+ <p>KEGG: C00130</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_e_boundary" name="Indole" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>PUBCHEM: 3747</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16881</p>
+ <p>KEGG: C00463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_e_boundary" name="myo-Inositol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3437</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17268</p>
+ <p>KEGG: C00137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_e_boundary" name="Inosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>PUBCHEM: 3588</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17596</p>
+ <p>KEGG: C00294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_isetac_e_boundary" name="Isethionic-acid" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>PUBCHEM: 7545</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05123</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_e_boundary" name="potassium" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>PUBCHEM: 3537</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29103</p>
+ <p>KEGG: C00238</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_e_boundary" name="KDO-2-lipid-IV-A" compartment="e" boundaryCondition="true" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>PUBCHEM: 8297</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06025</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_e_boundary" name="D-Lactate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3555</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 42111</p>
+ <p>KEGG: C00256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_e_boundary" name="L-Lactate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3486</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 422</p>
+ <p>KEGG: C00186</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lcts_e_boundary" name="Lactose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3542</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 36219</p>
+ <p>KEGG: C00243</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_e_boundary" name="L-Leucine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3423</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15603</p>
+ <p>KEGG: C00123</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_e_boundary" name="cold-adapted-KDO-2-lipid-A" compartment="e" boundaryCondition="true" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_e_boundary" name="KDO-2-lipid-A" compartment="e" boundaryCondition="true" charge="-6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>PUBCHEM: 8298</p>
+ <p>CHARGE: -6</p>
+ <p>CHEBI: 27963</p>
+ <p>KEGG: C06026</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_e_boundary" name="L-Lysine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>PUBCHEM: 3349</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18019</p>
+ <p>KEGG: C00047</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_e_boundary" name="L-Lyxose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 4676</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28480</p>
+ <p>KEGG: C01508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_e_boundary" name="D-Malate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3780</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30796</p>
+ <p>KEGG: C00497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_e_boundary" name="L-Malate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3449</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: C00149</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_e_boundary" name="Maltose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3508</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17306</p>
+ <p>KEGG: C00208</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_e_boundary" name="Maltohexaose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 5041</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01936</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_e_boundary" name="Maltopentaose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>PUBCHEM: 124005??3611</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28057</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_e_boundary" name="Maltotriose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>PUBCHEM: 4954</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 27931</p>
+ <p>KEGG: C01835</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_e_boundary" name="Maltotetraose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>PUBCHEM: 5141</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_e_boundary" name="D-Mannose-6-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3572</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17369</p>
+ <p>KEGG: C00275</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_e_boundary" name="D-Mannose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3459</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4208</p>
+ <p>KEGG: C00159</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_manglyc_e_boundary" name="2-alpha-D-Mannosyl-D-glycerate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>PUBCHEM: 13711</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15847</p>
+ <p>KEGG: C11544</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_e_boundary" name="Melibiose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 7769</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28053</p>
+ <p>KEGG: C05402</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_e_boundary" name="D-Methionine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>PUBCHEM: 4112</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16867</p>
+ <p>KEGG: C00855</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_e_boundary" name="L-Methionine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>PUBCHEM: 3373</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16643</p>
+ <p>KEGG: C00073</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_e_boundary" name="L-methionine-R-sulfoxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 847</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_e_boundary" name="L-Methionine-Sulfoxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 5898</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17016</p>
+ <p>KEGG: C02989</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_e_boundary" name="magnesium" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>PUBCHEM: 3599</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18420</p>
+ <p>KEGG: C00305</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_minohp_e_boundary" name="myo-Inositol-hexakisphosphate" compartment="e" boundaryCondition="true" charge="-12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>PUBCHEM: 4428</p>
+ <p>CHARGE: -12</p>
+ <p>CHEBI: 17401</p>
+ <p>KEGG: C01204</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmet_e_boundary" name="S-Methyl-L-methionine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>PUBCHEM: 6054</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 17728</p>
+ <p>KEGG: C03172</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_e_boundary" name="Mn2" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>PUBCHEM: 3336</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 18291</p>
+ <p>KEGG: C00034</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl_e_boundary" name="D-Mannitol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 3682</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16899</p>
+ <p>KEGG: C00392</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_e_boundary" name="Molybdate-MoO4" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8475</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 36264</p>
+ <p>KEGG: C06232</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mso3_e_boundary" name="methanesulfonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>PUBCHEM: 49991312</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 25224</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_e_boundary" name="Nitrous-oxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>PUBCHEM: 4143</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17045</p>
+ <p>KEGG: C00887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_e_boundary" name="Sodium" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>PUBCHEM: 4541</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 29101</p>
+ <p>KEGG: C01330</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_e_boundary" name="Nicotinate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>PUBCHEM: 3552</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15940</p>
+ <p>KEGG: C00253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_e_boundary" name="Ammonium" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>PUBCHEM: 4547</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 28938</p>
+ <p>KEGG: C01342</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_e_boundary" name="nickel" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>PUBCHEM: 3585</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 28112</p>
+ <p>KEGG: C00291</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_e_boundary" name="NMN" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>PUBCHEM: 3741</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16171</p>
+ <p>KEGG: C00455</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_e_boundary" name="Nitrite" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>PUBCHEM: 3388</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16301</p>
+ <p>KEGG: C00088</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_e_boundary" name="Nitrate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>PUBCHEM: 3543</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 48107</p>
+ <p>KEGG: C00244</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_e_boundary" name="Nitric-oxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>PUBCHEM: 3815</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16480</p>
+ <p>KEGG: C00533</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_e_boundary" name="O2" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3309</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15379</p>
+ <p>KEGG: C00007</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_e_boundary" name="Superoxide-anion" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3971</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18421</p>
+ <p>KEGG: C00704</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_e_boundary" name="octadecanoate-n-C180" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>PUBCHEM: 4692</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 25629</p>
+ <p>KEGG: C01530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_e_boundary" name="octadecenoate-n-C181" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>PUBCHEM: 3978</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16196</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_e_boundary" name="octanoate-n-C80" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>PUBCHEM: 8658</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28837</p>
+ <p>KEGG: C06423</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_e_boundary" name="Ornithine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>PUBCHEM: 4756</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18257</p>
+ <p>KEGG: C01602</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_e_boundary" name="Orotate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>PUBCHEM: 3589</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16742</p>
+ <p>KEGG: C00295</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_e_boundary" name="Oxaloacetate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>PUBCHEM: 3338</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 30744</p>
+ <p>KEGG: C00036</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_e_boundary" name="Phenylacetaldehyde" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>PUBCHEM: 3876</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16424</p>
+ <p>KEGG: C00601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peamn_e_boundary" name="Phenethylamine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>PUBCHEM: 7711</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18397</p>
+ <p>KEGG: C05332</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_e_boundary" name="L-Phenylalanine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>PUBCHEM: 3379</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17295</p>
+ <p>KEGG: C00079</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_e_boundary" name="Protoheme" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>PUBCHEM: 3334</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17627</p>
+ <p>KEGG: C00032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_e_boundary" name="Phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>PUBCHEM: 3311</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18367</p>
+ <p>KEGG: C00009</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_e_boundary" name="R-Pantothenate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>PUBCHEM: 4121</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ <p>KEGG: C00864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_e_boundary" name="Propionate-n-C30" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>PUBCHEM: 3463</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30768</p>
+ <p>KEGG: C00163</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_e_boundary" name="Propanal" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>PUBCHEM: 3762</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17153</p>
+ <p>KEGG: C00479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_e_boundary" name="Phenylpropanoate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>PUBCHEM: 7943</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28631</p>
+ <p>KEGG: C05629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppt_e_boundary" name="Phosphonate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>PUBCHEM: 8926</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06701</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_e_boundary" name="L-Proline" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>PUBCHEM: 3448</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17203</p>
+ <p>KEGG: C00148</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_e_boundary" name="L-Prolinylglycine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psclys_e_boundary" name="psicoselysine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_e_boundary" name="O-Phospho-L-serine" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>PUBCHEM: 4251</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15811</p>
+ <p>KEGG: C01005</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_e_boundary" name="Putrescine" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>PUBCHEM: 3434</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 17148</p>
+ <p>KEGG: C00134</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_e_boundary" name="Pyruvate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>PUBCHEM: 3324</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 32816</p>
+ <p>KEGG: C00022</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_e_boundary" name="alpha-D-Ribose-5-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 3417</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 17797</p>
+ <p>KEGG: C00117</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_e_boundary" name="D-Ribose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3421</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 47013</p>
+ <p>KEGG: C00121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_e_boundary" name="L-Rhamnose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 3790</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16055</p>
+ <p>KEGG: C00507</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt__D_e_boundary" name="D-Sorbitol" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4052</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17924</p>
+ <p>KEGG: C00794</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_e_boundary" name="D-Serine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 4003</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16523</p>
+ <p>KEGG: C00740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_e_boundary" name="L-Serine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 3365</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17115</p>
+ <p>KEGG: C00065</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_e_boundary" name="Shikimate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>PUBCHEM: 3776</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 16119</p>
+ <p>KEGG: C00493</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_e_boundary" name="sulfur-dioxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>PUBCHEM: 11497</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18422</p>
+ <p>KEGG: C09306</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_e_boundary" name="Sulfite" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>PUBCHEM: 3394</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 48854</p>
+ <p>KEGG: C00094</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_e_boundary" name="Sulfate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>PUBCHEM: 3359</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16189</p>
+ <p>KEGG: C00059</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_e_boundary" name="Spermidine" compartment="e" boundaryCondition="true" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>PUBCHEM: 3609</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 16610</p>
+ <p>KEGG: C00315</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_e_boundary" name="Succinate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>PUBCHEM: 3344</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15741</p>
+ <p>KEGG: C00042</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucr_e_boundary" name="Sucrose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3389</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17992</p>
+ <p>KEGG: C00089</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sulfac_e_boundary" name="sulfoacetate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>PUBCHEM: 7846991</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C14179</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_e_boundary" name="L-tartrate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 4154</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15671 30924</p>
+ <p>KEGG: C00898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_taur_e_boundary" name="Taurine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>PUBCHEM: 3544</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15891</p>
+ <p>KEGG: C00245</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_e_boundary" name="Thiocyanate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>PUBCHEM: 4888</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 29200</p>
+ <p>KEGG: C01755</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_e_boundary" name="Thiamin" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>PUBCHEM: 3668</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18385</p>
+ <p>KEGG: C00378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_e_boundary" name="L-Threonine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3488</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16857</p>
+ <p>KEGG: C00188</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_e_boundary" name="L-Threonine-O-3-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>PUBCHEM: 14294</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 37525</p>
+ <p>KEGG: C12147</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_e_boundary" name="Thymine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>PUBCHEM: 3478</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17821</p>
+ <p>KEGG: C00178</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_e_boundary" name="Thymidine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>PUBCHEM: 3514</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17748</p>
+ <p>KEGG: C00214</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tma_e_boundary" name="trimethylamine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>PUBCHEM: 3844</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 18139</p>
+ <p>KEGG: C00565</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmao_e_boundary" name="Trimethylamine-N-oxide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>PUBCHEM: 4338</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15724</p>
+ <p>KEGG: C01104</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_e_boundary" name="Trehalose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 4320</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16551</p>
+ <p>KEGG: C01083</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_e_boundary" name="L-Tryptophan" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>PUBCHEM: 3378</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16828</p>
+ <p>KEGG: C00078</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_e_boundary" name="Thiosulfate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>PUBCHEM: 3614</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16094</p>
+ <p>KEGG: C00320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_e_boundary" name="tetradecanoate-n-C140" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>PUBCHEM: 8659</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 28875 30807</p>
+ <p>KEGG: C06424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_e_boundary" name="tetradecenoate-n-C141" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_e_boundary" name="tungstate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>PUBCHEM: 26697048</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 46502</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tym_e_boundary" name="Tyramine" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>PUBCHEM: 3766</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15760</p>
+ <p>KEGG: C00483</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_e_boundary" name="L-Tyrosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>PUBCHEM: 3382</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17895</p>
+ <p>KEGG: C00082</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrp_e_boundary" name="Phosphotyrosine" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>PUBCHEM: 8732</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06501</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_e_boundary" name="UDP-N-acetyl-D-glucosamine" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3345</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16264</p>
+ <p>KEGG: C00043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpacgal_e_boundary" name="UDP-N-acetyl-D-galactosamine" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3503</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16650</p>
+ <p>KEGG: C00203</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_e_boundary" name="UDPglucose" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3331</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18066</p>
+ <p>KEGG: C00029</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_e_boundary" name="UDPgalactose" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3354</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 18307</p>
+ <p>KEGG: C00052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_e_boundary" name="UDP-D-glucuronate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>PUBCHEM: 3467</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17200</p>
+ <p>KEGG: C00167</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_e_boundary" name="UMP" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 3405</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 16695</p>
+ <p>KEGG: C00105</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_e_boundary" name="Uracil" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>PUBCHEM: 3406</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17568</p>
+ <p>KEGG: C00106</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_e_boundary" name="Urea" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>PUBCHEM: 3386</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16199</p>
+ <p>KEGG: C00086</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_e_boundary" name="Uridine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>PUBCHEM: 3593</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16704</p>
+ <p>KEGG: C00299</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_e_boundary" name="L-Valine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3483</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16414</p>
+ <p>KEGG: C00183</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_e_boundary" name="Xanthine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>PUBCHEM: 3675</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17712</p>
+ <p>KEGG: C00385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_e_boundary" name="Xanthosine-5-phosphate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>PUBCHEM: 3925</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15652</p>
+ <p>KEGG: C00655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_e_boundary" name="Xanthosine" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>PUBCHEM: 4895</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 18107</p>
+ <p>KEGG: C01762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_e_boundary" name="D-Xylose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3481</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 15936</p>
+ <p>KEGG: C00181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_e_boundary" name="L-Xylulose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3606</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 17399</p>
+ <p>KEGG: C00312</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_e_boundary" name="Zinc" compartment="e" boundaryCondition="true" charge="2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>PUBCHEM: 3340</p>
+ <p>CHARGE: 2</p>
+ <p>CHEBI: 29105</p>
+ <p>KEGG: C00038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_e_boundary" name="2-Aminoethylphosphonate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>PUBCHEM: 6353</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 15573</p>
+ <p>KEGG: C03557</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_e_boundary" name="4-Hydroxyphenylacetate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>PUBCHEM: 3915</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 18101</p>
+ <p>KEGG: C00642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_e_boundary" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa20Oag_e_boundary" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="e" boundaryCondition="true" charge="-11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C656H1103N2O440P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_e_boundary" name="Salmochelin-S4" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_e_boundary" name="Salmochelin-S4-Fe-III" compartment="e" boundaryCondition="true" charge="3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_e_boundary" name="Salmochelin-SX" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag__D_e_boundary" name="D-Tagatose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4053</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 4249</p>
+ <p>KEGG: C00795</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_e_boundary" name="Aminoimidazole-riboside" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_e_boundary" name="Phosphoenolpyruvate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>PUBCHEM: 3374</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 18021 44897</p>
+ <p>KEGG: C00074</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_e_boundary" name="D-Glycerate-2-phosphate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3904</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17835</p>
+ <p>KEGG: C00631</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_e_boundary" name="3-Phospho-D-glycerate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3497</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 17794</p>
+ <p>KEGG: C00197</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tet_e_boundary" name="Tetrathionate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O6S4</p>
+ <p>PUBCHEM: 5169</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15226 16853</p>
+ <p>KEGG: C02084</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_e_boundary" name="Formamide" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>PUBCHEM: 3771</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 16397</p>
+ <p>KEGG: C00488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_e_boundary" name="D-tartrate" compartment="e" boundaryCondition="true" charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 5189</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15672</p>
+ <p>KEGG: C02107</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abz_e_boundary" name="4-Aminobenzoate" compartment="e" boundaryCondition="true" charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>PUBCHEM: 3847</p>
+ <p>CHARGE: -1</p>
+ <p>CHEBI: 30753</p>
+ <p>KEGG: C00568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_e_boundary" name="Ferrioxamine-B" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_e_boundary" name="Ferrioxamine-B-fe" compartment="e" boundaryCondition="true" charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_e_boundary" name="Ferrioxamine-E" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_e_boundary" name="Ferrioxamine-E-fe" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_e_boundary" name="Ferrioxamine-G" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_e_boundary" name="Ferrioxamine-G-fe" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_e_boundary" name="2-Deoxy-D-ribose" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 4927</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28816</p>
+ <p>KEGG: C01801</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_e_boundary" name="dxyl_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8496</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 28354</p>
+ <p>KEGG: C06257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_e_boundary" name="salchs2fe_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_e_boundary" name="rnam_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 6038</p>
+ <p>CHARGE: 1</p>
+ <p>CHEBI: 15927</p>
+ <p>KEGG: C03150</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipaOA_e_boundary" name="colipaOA_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_e_boundary" name="udcpo4_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_e_boundary" name="tricarballylate" compartment="e" boundaryCondition="true" charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6 </p>
+ <p>PUBCHEM: 135626273</p>
+ <p>CHARGE: -3</p>
+ <p>CHEBI: 62517</p>
+ <p>KEGG: C19806</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_e_boundary" name="fe3dhbzs3_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_e_boundary" name="23dhbzs3_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_e_boundary" name="guln__L_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_e_boundary" name="udcpo5_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_e_boundary" name="4hthr_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8326</p>
+ <p>CHARGE: 0</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06056</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_e_boundary" name="salchs2_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>CHARGE: nan</p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tton_e_boundary" name="tton_e" compartment="e" boundaryCondition="true" charge="0">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 4976</p>
+ <p>CHARGE: -2</p>
+ <p>CHEBI: 15987</p>
+ <p>KEGG: C01861</p>
+ </html>
+ </notes>
+ </species>
+ </listOfSpecies>
+ <listOfReactions>
+ <reaction id="R_12DGR120tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr120_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr120_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR140tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr140_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR141tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr141_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR160tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR161tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR180tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr180_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12DGR181tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr181_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDRtex" name=" R Propane 1 2 diol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDRtpp" name=" R Propane 1 2 diol facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2037</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDStex" name=" S Propane 1 2 diol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDStpp" name=" S Propane 1 2 diol facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2037</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_14GLUCANabcpp" name="1 4 alpha D glucan transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_14glucan_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_14GLUCANtexi" name="1 4 alpha D glucan transport via diffusion extracellular to periplasm irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_14glucan_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CAMPtex" name="23cAMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23camp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23camp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CCMPtex" name="23cCMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23ccmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CGMPtex" name="23cGMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cgmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cgmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23CUMPtex" name="23cUMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23DAPPAt2pp" name="2 3 diaminopropionate transport in via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_23dappa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dappa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23DAPPAtex" name="2 3 diaminopropionate transport via diffusion" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dappa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE2pp" name="2 3 cyclic nucleotide phosphodiesterase UMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_3ump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE4pp" name="2 3 cyclic nucleotide phosphodiesterase CMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_3cmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE7pp" name="2 3 cyclic nucleotide phosphodiesterase AMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_23camp_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_23PDE9pp" name="2 3 cyclic nucleotide phosphodiesterase GMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_23cgmp_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3gmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_26DAHtex" name="meso 2 6 Diaminoheptanedioate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap__M_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap__M_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA120tipp" name="2 Acyl sn glycero 3 phosphatidate n C120 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddecg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddecg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA140tipp" name="2 Acyl sn glycero 3 phosphatidate n C140 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdecg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdecg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA141tipp" name="2 Acyl sn glycero 3 phosphatidate n C141 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdec7eg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdec7eg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA160tipp" name="2 Acyl sn glycero 3 phosphatidate n C160 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdecg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdecg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA161tipp" name="2 Acyl sn glycero 3 phosphatidate n C161 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdec9eg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdec9eg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA180tipp" name="2 Acyl sn glycero 3 phosphatidate n C180 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odecg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odecg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPA181tipp" name="2 Acyl sn glycero 3 phosphatidate n C181 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odec11eg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odec11eg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE120tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C120 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE140tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C140 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE141tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C141 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe141_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE160tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C160 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE161tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C161 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE180tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C180 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPE181tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C181 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe181_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT120" name="2 acyl glycerophospho ethanolamine acyltransferase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe120_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT140" name="2 acyl glycerophospho ethanolamine acyltransferase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe140_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT141" name="2 acyl glycerophospho ethanolamine acyltransferase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_pe141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT160" name="2 acyl glycerophospho ethanolamine acyltransferase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe160_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT161" name="2 acyl glycerophospho ethanolamine acyltransferase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pe161_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT180" name="2 acyl glycerophospho ethanolamine acyltransferase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe180_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPEAT181" name="2 acyl glycerophospho ethanolamine acyltransferase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_pe181_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG120tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C120 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG140tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C140 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG141tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C141 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG160tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C160 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG161tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C161 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG180tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C180 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg180_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPG181tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C181 transporter via facilitated diffusion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg181_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT120" name="2 acyl glycerophospho glycerol acyltransferase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT140" name="2 acyl glycerophospho glycerol acyltransferase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pg140_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT141" name="2 acyl glycerophospho glycerol acyltransferase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pg141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT160" name="2 acyl glycerophospho glycerol acyltransferase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pg160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT161" name="2 acyl glycerophospho glycerol acyltransferase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pg161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT180" name="2 acyl glycerophospho glycerol acyltransferase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pg180_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2AGPGAT181" name="2 acyl glycerophospho glycerol acyltransferase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGLCNRx" name="2 dehydro D gluconate reductase NADH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_2dhglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_glcn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGLCNRy" name="2 dehydro D gluconate reductase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGULRx" name="2 dehydro L gulonate reductase NADH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhguln_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2DGULRy" name="2 dehydro L gulonate reductase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhguln_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2MAHMP" name="2 Methyl 4 amino 5 hydroxymethylpyrimidine diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0457 or STM1235 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mahmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ampm_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_34dhpactex" name="dihydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpac_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34dhpac_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3AMPtex" name="3AMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3CMPtex" name="3CMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3cmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3GMPtex" name="3GMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM2267 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3gmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD100" name="3 hydroxyacyl acyl carrier protein dehydratase n C100 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hdecACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD120" name="3 hydroxyacyl acyl carrier protein dehydratase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddecACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_tddec2eACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD121" name="3 hydroxyacyl acyl carrier protein dehydratase n C121 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcddec5eACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD140" name="3 hydroxyacyl acyl carrier protein dehydratase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_tmrs2eACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD141" name="3 hydroxyacyl acyl carrier protein dehydratase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcmrs7eACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD160" name="3 hydroxyacyl acyl carrier protein dehydratase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpalmACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tpalm2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD161" name="3 hydroxyacyl acyl carrier protein dehydratase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcpalm9eACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD180" name="3 hydroxyacyl acyl carrier protein dehydratase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hoctaACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_toctd2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD181" name="3 hydroxyacyl acyl carrier protein dehydratase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcvac11eACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD40" name="3 hydroxyacyl acyl carrier protein dehydratase n C40 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3haACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD60" name="3 hydroxyacyl acyl carrier protein dehydratase n C60 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhexACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thex2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3HAD80" name="3 hydroxyacyl acyl carrier protein dehydratase n C80 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hoctACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_toct2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3KGK" name="3 keto L gulonate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3674</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhguln_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhgulnp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD2pp" name="3 nucleotidase UMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD4pp" name="3 nucleotidase CMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4403 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_cytd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD7pp" name="3 nucleotidase AMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4403 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_adn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3NTD9pp" name="3 nucleotidase GMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR100" name="3 oxoacyl acyl carrier protein reductase n C100 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_3odecACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hdecACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR120" name="3 oxoacyl acyl carrier protein reductase n C120 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_3oddecACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hddecACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR121" name="3 oxoacyl acyl carrier protein reductase n C121 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_3ocddec5eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcddec5eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR140" name="3 oxoacyl acyl carrier protein reductase n C140 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_3omrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR141" name="3 oxoacyl acyl carrier protein reductase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ocmrs7eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_3hcmrs7eACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR160" name="3 oxoacyl acyl carrier protein reductase n C160 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3opalmACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpalmACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR161" name="3 oxoacyl acyl carrier protein reductase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_3ocpalm9eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_3hcpalm9eACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR180" name="3 oxoacyl acyl carrier protein reductase n C180 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ooctdACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_3hoctaACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR181" name="3 oxoacyl acyl carrier protein reductase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_3ocvac11eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcvac11eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR40" name="3 oxoacyl acyl carrier protein reductase n C40 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_actACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_3haACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR60" name="3 oxoacyl acyl carrier protein reductase n C60 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_3ohexACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hhexACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAR80" name="3 oxoacyl acyl carrier protein reductase n C80 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ooctACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_3hoctACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS100" name="3 oxoacyl acyl carrier protein synthase n C100 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ocACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_3odecACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS120" name="3 oxoacyl acyl carrier protein synthase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_3oddecACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS121" name="3 oxoacyl acyl carrier protein synthase n C121 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdec3eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocddec5eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS140" name="3 oxoacyl acyl carrier protein synthase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_3omrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS141" name="3 oxoacyl acyl carrier protein synthase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_cddec5eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_3ocmrs7eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS160" name="3 oxoacyl acyl carrier protein synthase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_3opalmACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS161" name="3 oxoacyl acyl carrier protein synthase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocpalm9eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS180" name="3 oxoacyl acyl carrier protein synthase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1197 or STM2378 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_palmACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_3ooctdACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS181" name="3 oxoacyl acyl carrier protein synthase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1197</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocvac11eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS60" name="3 oxoacyl acyl carrier protein synthase n C60 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_butACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ohexACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3OAS80" name="3 oxoacyl acyl carrier protein synthase n C80 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_hexACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_3ooctACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3PEPTabcpp" name="tripeptide LalaDgluMdap transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1679 and STM1745 and STM1744 and STM1743 and STM1742 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3PEPTtex" name="LalaDgluMdap tripeptide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3UMPtex" name="3UMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HOXPACDtex" name="4 hydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpacd_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpacd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PCP" name="tetrapeptide L D carboxypeptidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PCPpp" name="tetrapeptide L D carboxypeptidase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PEPTabcpp" name="tetrapeptide LalaDgluMdapDala transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1746.S and STM1745 and STM1744 and STM1743 and STM1742 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4PEPTtex" name="LalaDgluMdapDala pentapeptide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DGLCNR" name="5 dehydro D gluconate reductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4483</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_glcn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DGLCNt2rpp" name="5 Dehydro D gluconate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4482</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DGLCNtex" name="5 Dehydro D gluconate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM0999 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5DOAN" name="5 deoxyadenosine nuclosidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0207</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__5_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_5drib_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_A5PISO" name="arabinose 5 phosphate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2838.S or STM3315 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ara5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS1" name="acyl acyl carrier protein synthetase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS2" name="acyl acyl carrier protein synthetase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS3" name="acyl acyl carrier protein synthetase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_palmACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS4" name="acyl acyl carrier protein synthetase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS5" name="acyl acyl carrier protein synthetase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS6" name="acyl acyl carrier protein synthetase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS7" name="acyl acyl carrier protein synthetase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS8" name="acyl acyl carrier protein synthetase n C100 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_dca_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACPS9" name="acyl acyl carrier protein synthetase n C80 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_octa_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_ocACP_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AACTOOR" name="Aminoacetoneoxygen oxidoreductase deaminating flavin containing " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aact_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AAMYL" name="alpha amylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1963</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AAMYLpp" name="alpha amylase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3664</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABTA" name="4 aminobutyrate transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2792</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_4abut_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucsal_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABUTD" name="Aminobutyraldehyde dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1597</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abutn_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABUTt2pp" name="4 aminobutyrate transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2793</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_4abut_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABUTtex" name="4 aminobutyrate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACACtex" name="acetoacetate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acac_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACALD" name="acetaldehyde dehydrogenase acetylating " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1749 or STM2463 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACALDtex" name="acetaldehyde transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACALDtpp" name="acetaldehyde reversible transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACBIPGT" name="Adenosyl cobinamide phosphate guanyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2018</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbip_c" stoichiometry="1"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agdpcbi_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACCOAC" name="acetyl CoA carboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0232 and STM2366 and STM3379 and STM3380 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_hco3_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_malcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACCOAL" name="acetate CoA ligase ADP forming " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0371 or STM4275 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAL1PPpp" name="N acetyl D galactosamine 1 phosphatase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_acgal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAL1Ptex" name="N acetyl D galactosamine 1 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal1p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGALtex" name="N acetyl D galactosamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAM1PPpp" name="N acetyl D glucosamine 1 phosphatase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_acgam1p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAM1Ptex" name="N acetyl D glucosamine 1 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAMK" name="N acetylglucosamine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1220</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_acgam_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAMT" name="UDP N acetylglucosamineundecaprenylphosphate N acetylglucosamine 1 phosphate transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3918</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ <speciesReference species="M_uacgam_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_unaga_c" stoichiometry="1"/>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAptspp" name="N Acetyl D glucosamine transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2433 and STM1203 and STM2431 and STM2432 ) or ( STM0685 and STM2431 and STM2432 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGAtex" name="N Acetyl D glucosamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGK" name="acetylglutamate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4122</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acglu_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acg5p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACGS" name="N acetylglutamate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2992</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acglu_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACHBS" name="2 aceto 2 hydroxybutanoate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3795 and STM3796 ) or ( STM3901 and STM3902 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2obut_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_2ahbut_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACKr" name="acetate kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3242 or STM2337 or STM1883 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_actp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACLS" name="acetolactate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3795 and STM3796 ) or ( STM3901 and STM3902 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alac__S_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACM6PH" name="N acetylmuramate 6 phosphate hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMAMUT" name="UDP N acetyl D mannosaminuronic acid transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3929</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unaga_c" stoichiometry="1"/>
+ <speciesReference species="M_uacmamu_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_unagamu_c" stoichiometry="1"/>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMANAptspp" name="N acetyl D mannosamine transport via PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_acmana_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmanap_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMANAtex" name="N acetyl D mannosamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM0320 or STM0999 or STM1473 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmana_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACMUMtex" name="N acetylmuramate transport via diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmum_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACNAMt2pp" name="N acetylneuraminate proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3338</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acnam_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACNAMtex" name="N acetylneuraminate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acnam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACNML" name="N Acetylneuraminate lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3339</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmana_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD1f" name="acyl CoA dehydrogenase butanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_b2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD2f" name="acyl CoA dehydrogenase hexanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hx2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD3f" name="acyl CoA dehydrogenase octanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_occoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oc2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD4f" name="acyl CoA dehydrogenase decanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_dc2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD5f" name="acyl CoA dehydrogenase dodecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_dd2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD6f" name="acyl CoA dehydrogenase tetradecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_td2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD7f" name="acyl CoA dehydrogenase hexadecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdd2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOAD8f" name="acyl CoA dehydrogenase octadecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_stcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_od2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOATA" name="Acetyl CoA ACP transacylase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1196 and STM1193 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_acACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACODA" name="acetylornithine deacetylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4120</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acorn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orn_c" stoichiometry="1"/>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOLIPAtex" name="arabinose modified core oligosaccharide lipid A transport via vector periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acolipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acolipa_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONIs" name="aconitate isomerase spontaneous " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__T_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONTa" name="aconitase half reaction A Citrate hydro lyase " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0158 or STM1712 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_acon__C_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONTb" name="aconitase half reaction B Isocitrate hydro lyase " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0158 or STM1712 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_acon__C_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACOTA" name="acetylornithine transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3468 or STM1303 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acorn_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_acg5sa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACPS1" name="acyl carrier protein synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2577 or STM3583 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_apoACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pap_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACS" name="acetyl CoA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4275</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACSERtex" name="O Acetyl L serine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACSERtpp" name="O Acetyl L serine export via facilitated transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2645 or STM1517 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACt2rpp" name="acetate reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACt4pp" name="NaAcetate symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4273</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_p" stoichiometry="1"/>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACtex" name="Acetate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADA" name="Adenosine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1463</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_ins_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADCL" name="4 aminobenzoate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1198</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4adcho_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abz_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADCS" name="4 amino 4 deoxychorismate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3469 and STM1824 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4adcho_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADEt2rpp" name="adenine transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3747</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADEtex" name="adenine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADK1" name="adenylate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADK3" name="adentylate kinase GTP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADK4" name="adentylate kinase ITP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_itp_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADMDC" name="adenosylmethionine decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0165</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_ametam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNCYC" name="adenylate cyclase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3939</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_camp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNK1" name="adenosine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNUC" name="adenosine hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0051</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_adn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNt2pp" name="adenosine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_adn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNt2rpp" name="adenosine transport in via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_adn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADNtex" name="adenosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBLabcpp" name="Adenosylcobalamin transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbl_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBLtonex" name="Adenosylcobalimin transport via ton system extermal " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_adocbl_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADPRDP" name="ADPribose diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3185</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adprib_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADPT" name="adenine phosphoribosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0483</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSK" name="adenylyl sulfate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2933</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aps_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_paps_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSL1r" name="adenylsuccinate lyase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1232</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcamp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSL2r" name="adenylosuccinate lyase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1232</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25aics_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aicar_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADSS" name="adenylosuccinate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4366</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcamp_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGDC" name="N acetylglucosamine 6 phosphate deacetylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0683</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3PA" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3PApp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4358 or STM2450 or STM2991 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1"/>
+ <speciesReference species="M_anhgm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3PH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide beta 1 4 N acetylglucosaminidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1209</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c" stoichiometry="1"/>
+ <speciesReference species="M_anhm3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM3Pt2pp" name="GlcNAc anhMurNAc tripeptide transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0444</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PA" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PApp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2991 or STM4358 or STM2450 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1"/>
+ <speciesReference species="M_anhgm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PCP" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PCPpp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase periplasmic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4PH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide beta 1 4 N acetylglucosaminidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1209</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c" stoichiometry="1"/>
+ <speciesReference species="M_anhm4p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGM4Pt2pp" name="GlcNAc anhMurNAc tetrapeptide transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0444</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl beta 1 4 N acetylglucosaminidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1209</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c" stoichiometry="1"/>
+ <speciesReference species="M_anhm_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMHE" name="ADP D glycero D manno heptose epimerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3710</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep__DD_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMT" name="agmatinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3078</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_c" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMt2pp" name="GlcNAc anhMurNAc transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0444</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_anhgm_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGMtex" name="agmatine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT120" name="1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1ddecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa120_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT140" name="1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1tdecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa140_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT141" name="1 tetradec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1tdec7eg3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa141_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT160" name="1 hexadecanoyl sn glycerol 3 phosphate O acyltransferase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_palmACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1hdecg3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa160_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT161" name="1 hexadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1hdec9eg3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_pa161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT180" name="1 octadecanoyl sn glycerol 3 phosphate O acyltransferase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1odecg3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPAT181" name="1 octadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1odec11eg3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_pa181_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AGPR" name="N acetyl g glutamyl phosphate reductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4121</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_acg5sa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_acg5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AHCYSNS" name="S adenosylhomocysteine nucleosidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0207</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_rhcys_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AICART" name="phosphoribosylaminoimidazolecarboxamide formyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4176</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="1"/>
+ <speciesReference species="M_aicar_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_fprica_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AIRC2" name="phosphoribosylaminoimidazole carboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0533</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_hco3_c" stoichiometry="1"/>
+ <speciesReference species="M_air_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_5caiz_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AIRC3" name="phosphoribosylaminoimidazole carboxylase mutase rxn " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0534</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aizc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5caiz_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AKGDH" name="2 Oxogluterate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0154 and STM0736 and STM0737 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AKGt2rpp" name="2 oxoglutarate reversible transport via symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2654</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_akg_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AKGtex" name="alpha ketoglutarate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAabcpp" name="D alanyl D alanine DalaDala transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAr" name="D alanine D alanine ligase reversible " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0380 or STM0130 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_c" stoichiometry="2"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAtex" name="D alanyl D alanine DalaDala transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAGLUE" name="L alanyl gamma glutamate epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1681</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDglu_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaLglu_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAR" name="alanine racemase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4247 or STM1802 )</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATA_D2" name="D alanine transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1"/>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATA_L" name="L alanine transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATA_L2" name="alanine transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0934 or STM2555 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALATRS" name="Alanyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2827</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaala_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alatrna_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAabcpp" name="L alanine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAt2pp" name="L alanine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ala__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAt4pp" name="L alanine transport in via sodium symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0006</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_ala__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAtex" name="L alanine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALDD2y" name="aldehyde dehydrogenase acetaldehyde NADP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3680</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALDD3y" name="aldehyde dehydrogenase propanal NADP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3680</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppal_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTAMH" name="allantoate amidohydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0527</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_alltt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urdglyc_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTN" name="allantoinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0523</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_alltt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTNt2rpp" name="allantoin transport in via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0522</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_alltn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLTNtex" name="allantoin transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALLtex" name="Allose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_all__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALR2" name="aldose reductase methylglyoxal " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3165 or STM0255 or STM1288 )</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acetol_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALR4x" name="aldose reductase acetol " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4108</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acetol_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AM3PA" name="anhydrous N Acetylmuramyl tripeptide amidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_anhm3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhm_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AM4PA" name="anhydrous N Acetylmuramyl tetrapeptide amidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhm4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhm_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AM4PCP" name="anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhm4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ <speciesReference species="M_anhm3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT1" name="Amylomaltase maltotriose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_c" stoichiometry="1"/>
+ <speciesReference species="M_malt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltttr_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT2" name="Amylomaltase maltotetraose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_c" stoichiometry="1"/>
+ <speciesReference species="M_malt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltpt_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT3" name="Amylomaltase maltopentaose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMALT4" name="Amylomaltase maltohexaose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c" stoichiometry="1"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_malthp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMANAPEr" name="N acetylmannosamine 6 phosphate epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3337</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmanap_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMANK" name="N acetyl D mannosamine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3336</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_acmanap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMAOTr" name="adenosylmethionine 8 amino 7 oxononanoate transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0793</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_8aonn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dann_c" stoichiometry="1"/>
+ <speciesReference species="M_amob_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMMQLT8" name="S adenosylmethione2 demthylmenaquinole methyltransferase menaquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3970</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPMS2" name="4 amino 2 methyl 5 phosphomethylpyrimidine synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4164</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_air_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_4ampm_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPN" name="AMP nucleosidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2009</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPTASECG" name="alanyl aminopeptidase cys gly " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1057 or STM0316 or STM4477 or STM2536 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPTASEPG" name="aminopeptidase pro gly " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2536 or STM4477 or STM0316 or STM1057 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_c" stoichiometry="1"/>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AMPtex" name="AMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANHGMtex" name="GlcNAc anhMurNAc transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANHMK" name="1 6 anhydrous N Acetylmuramate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1446</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_anhm_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmum6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANPRT" name="anthranilate phosphoribosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1724</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ <speciesReference species="M_anth_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pran_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ANS" name="anthranilate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1724 and STM1723 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_anth_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AOBUTDs" name="L 2 amino 3 oxobutanoate decarboxylation spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2aobut_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aact_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AOXSr" name="8 amino 7 oxononanoate synthase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0795</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pmcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_8aonn_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AP4AH" name="Ap4A hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0088</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ap4a_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AP5AH" name="Ap5A hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0088</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ap5a_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APRAUR" name="5 amino 6 5 phosphoribosylamino uracil reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0416</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_5apru_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_5aprbu_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARAI" name="L arabinose isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0102</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rbl__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNR1" name="aerobactin reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_arbtn_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNR2" name="aerobactin reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_arbtn_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNR3" name="aerobactin reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_arbtn_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNabcpp" name="aerobactin transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_arbtn__fe3_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNexs" name="aerobactin Fe loading reaction spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn__fe3_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNtex" name="aerobactin secretion to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_e" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNtonex" name="aerobactin transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn__fe3_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBTNtpp" name="aerobactin secretion to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_arbtn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBt2rpp" name="L arabinose transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3016</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBt3ipp" name="L arabinose transport via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1522</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_arab__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARBtex" name="L arabinose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGAGMt7pp" name="Arginineagmatine antiport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4294</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_p" stoichiometry="1"/>
+ <speciesReference species="M_agm_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ <speciesReference species="M_agm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGDC" name="arginine decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4296 or STM3086 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_agm_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGDCpp" name="arginine decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3086</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agm_p" stoichiometry="1"/>
+ <speciesReference species="M_co2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGORNt7pp" name="arginineornithine antiporter periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1477</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_c" stoichiometry="1"/>
+ <speciesReference species="M_arg__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ <speciesReference species="M_orn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGSL" name="argininosuccinate lyase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4123</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_argsuc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGSS" name="argininosuccinate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3290.S</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_citr__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_argsuc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGTRS" name="Arginyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1909</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaarg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_argtrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGabcpp" name="L arginine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2355 and STM2352 and STM2351 and STM2353 ) or ( STM0890 and STM0887 and STM0888 and STM0891 and STM0889 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGt3pp" name="L arginine transport out via proton antiport cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3066</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGtex" name="L arginine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASAD" name="aspartate semialdehyde dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3539</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aspsa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4pasp_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASCBPL" name="L ascorbate 6 phosphate lactonase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4382</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhgulnp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASCBptspp" name="L ascorbate transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2431 and STM2432 and STM4385 and STM4384 and STM4383.S )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb__L_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ascb6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASCBtex" name="L ascorbate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ascb__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNN" name="L asparaginase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1294 or STM0847 or STM3598 )</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNNpp" name="L asparaginase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3106</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_p" stoichiometry="1"/>
+ <speciesReference species="M_asp__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNS1" name="asparagine synthase glutamine hydrolysing " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0680</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNS2" name="asparagine synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3877</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNTRS" name="Asparaginyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1000</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaasn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_asntrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNabcpp" name="L asparagine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_asn__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNt2rpp" name="L asparagine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1584</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASNtex" name="L asparagine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASO3tex" name="arsenite transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aso3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASP1DC" name="aspartate 1 decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0180</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__B_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPCT" name="aspartate carbamoyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4459 and STM4460 )</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbp_c" stoichiometry="1"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbasp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPK" name="aspartate kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0002 or STM4101 or STM4220 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4pasp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO3" name="L aspartate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_iasp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO4" name="L aspartate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_iasp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO5" name="L aspartate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_iasp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPO6" name="L aspartate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_iasp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPT" name="L aspartase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4326</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPTA" name="aspartate transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0998</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPTRS" name="Aspartyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1901</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaasp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_asptrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPabcpp" name="L aspartate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0665 and STM0664 and STM0663 and STM0662 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_asp__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPt2_2pp" name="Aspartate transport via proton symport 2 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPt2pp" name="L aspartate transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4283</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPtex" name="L aspartate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AST" name="Arginine succinyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1304</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succoa_c" stoichiometry="1"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_sucarg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATHRDHr" name="L allo threonine dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1511</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_athr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_2aobut_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPHs" name="ATP amine hydrolysis spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_itp_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPM" name="ATP maintenance requirement" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="8.39" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="8.39" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPPRT" name="ATP phosphoribosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2071</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prbatp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ATPS4rpp" name="ATP synthase four protons for one ATP periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM3869 and STM3870 and STM3871 ) and ( STM3864 and STM3865 and STM3866 and STM3867 and STM3868 ) ) or ( ( STM3869 and STM3870 and STM3871 ) and ( STM3864 and STM3865 and STM3866 and STM3867 and STM3868 ) and STM3872 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BALAt2pp" name="beta alanine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__B_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__B_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BALAtex" name="beta alanine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__B_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__B_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BPNT" name="3 5 bisphosphate nucleotidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pap_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BSORx" name="Biotin sulfoxide reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3644</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btnso_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BSORy" name="Biotin sulfoxide reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3644</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_btnso_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BTS4" name="Biotin synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0794</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtbt_c" stoichiometry="1"/>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_s_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__5_c" stoichiometry="1"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_btn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BUTSO3tex" name="butanesulfonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butso3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_butso3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_BUTtex" name="Butyrate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CA2t3pp" name="calcium Ca2 transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1771</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ca2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ca2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CA2tex" name="calcium Ca2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ca2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CADVtpp" name="LysineCadaverine antiporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2558</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_p" stoichiometry="1"/>
+ <speciesReference species="M_15dap_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_15dap_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CAt6pp" name="calcium sodium antiporter 11 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3314</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_ca2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ca2_p" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBIAT" name="Cobinamide adenyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1718</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1"/>
+ <speciesReference species="M_adocbi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBItonex" name="Cobinamide transport via ton system extermal " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbi_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBIuabcpp" name="Cobinamide transport via ABC system uptake periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_cbi_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBL1abcpp" name="Cob 1 alamin transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbl1_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbl1_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBL1tonex" name="Cob 1 alamin transport via ton system extermal " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_cbl1_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbl1_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBPS" name="carbamoyl phosphate synthase glutamine hydrolysing " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0066 and STM0067 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_hco3_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbp_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2abcpp" name="Cadmium Cd2 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cd2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_cd2_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2t3pp" name="cadmium Cd2 transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0758 or STM4061 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cd2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2tex" name="cadmium Cd2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cd2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CD2tpp" name="cadmium 2 transport in via permease no H " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cd2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA120" name="CDP Diacylglycerol pyrophostatase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa120_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA140" name="CDP Diacylglycerol pyrophostatase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa140_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA141" name="CDP Diacylglycerol pyrophostatase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa141_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA160" name="CDP Diacylglycerol pyrophostatase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa160_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA161" name="CDP Diacylglycerol pyrophostatase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pa161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA180" name="CDP Diacylglycerol pyrophostatase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDAPPA181" name="CDP Diacylglycerol pyrophostatase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa181_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDPMEK" name="4 cytidine 5 diphospho 2 C methyl D erythritol kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1779</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4c2me_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2p4c2me_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS160E" name="cyclopropane fatty acid synthase Phosphatidylethanolamine n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_pe161_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cpe160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS160G" name="cyclopropane fatty acid synthase Phosphatidylglycerol n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_pg161_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cpg160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS180E" name="cyclopropane fatty acid synthase Phosphatidylethanolamine n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_pe181_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cpe180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CFAS180G" name="cyclopropane fatty acid synthase Phosphatidylglycerol n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_c" stoichiometry="1"/>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cpg180_c" stoichiometry="1"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CGLYabcpp" name="L Cysteinylglycine Cys Gly transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cgly_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CGLYtex" name="L Cysteinylglycine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHLabcpp" name="choline transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2162 and STM2163 and STM2164 and STM2165 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_chol_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHLtex" name="choline transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHORS" name="chorismate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2384</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3psme_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chor_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHRPL" name="Chorismate pyruvate lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4233</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_4hbz_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITL" name="Citrate lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM0621 and STM0622 and STM0623 ) or ( STM0059 and STM0060 and STM0061 ) ) and STM0620 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITt7pp" name="Citrate transport via succinate antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0618</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_p" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITtex" name="citrate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICITtex" name="citrate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONCtex" name="cisaconitat transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__C_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLIPAtex" name="cold lipid A transport via vector periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa__cold_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa__cold_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH120pp" name="cardiolipin hydrolase periplasm n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_pa120_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH140pp" name="cardiolipin hydrolase periplasm n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_clpn140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa140_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH141pp" name="cardiolipin hydrolase periplasm n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_clpn141_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_pa141_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH160pp" name="cardiolipin hydrolase periplasm n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_clpn160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa160_p" stoichiometry="1"/>
+ <speciesReference species="M_pg160_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH161pp" name="cardiolipin hydrolase periplasm n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_clpn161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_pa161_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH180pp" name="cardiolipin hydrolase periplasm n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_pa180_p" stoichiometry="1"/>
+ <speciesReference species="M_pg180_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNH181pp" name="cardiolipin hydrolase periplasm n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn181_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_pa181_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS120pp" name="cardiolipin synthase periplasmic n C120 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn120_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS140pp" name="cardiolipin synthase periplasmic n C140 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg140_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn140_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS141pp" name="cardiolipin synthase periplasmic n C141 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn141_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS160pp" name="cardiolipin synthase periplasmic n C160 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ <speciesReference species="M_clpn160_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS161pp" name="cardiolipin synthase periplasmic n C161 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ <speciesReference species="M_clpn161_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS180pp" name="cardiolipin synthase periplasmic n C180 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ <speciesReference species="M_clpn180_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLPNS181pp" name="cardiolipin synthase periplasmic n C181 " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn181_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLt3_2pp" name="chloride transport out via proton antiport 21 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0203 or STM1490 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cl_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cl_c" stoichiometry="2"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CLtex" name="chloride Cl 1 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cl_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cl_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CMPN" name="CMP nucleosidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_c" stoichiometry="1"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CMPtex" name="CMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CO2tex" name="CO2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CO2tpp" name="CO2 transporter via diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2abcpp" name="Cobalt Co2 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2t3pp" name="cobalt Co2 transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2tex" name="cobalt Co2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBALT2tpp" name="cobalt transport in via permease no H " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3190 or STM3952 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COLIPAabcpp" name="core oligosaccharide lipid A transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COLIPAtex" name="core oligosaccharide lipid A transport via vector periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipa_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNR1" name="coprogen Fe III reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNR2" name="coprogen Fe III reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNR3" name="coprogen Fe III reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNUtex" name="coprogen unloaded secretion extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn__un_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cpgn__un_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNUtpp" name="coprogen unloaded secretion" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn__un_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNabcpp" name="coprogen transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNexs" name="coprogen Fe loading reaction spontaneaous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn__un_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPGNtonex" name="Coprogen transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1204 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPPPGO" name="coproporphyrinogen oxidase O2 required " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2451</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpppg3_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="2"/>
+ <speciesReference species="M_pppg9_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CPPPGO2" name="Oxygen Independent coproporphyrinogen III oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4004</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpppg3_c" stoichiometry="1"/>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_c" stoichiometry="2"/>
+ <speciesReference species="M_pppg9_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="2"/>
+ <speciesReference species="M_dad__5_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNBTCT" name="gamma butyrobetainyl CoA carnitine CoA transferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0072</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_c" stoichiometry="1"/>
+ <speciesReference species="M_bbtcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crncoa_c" stoichiometry="1"/>
+ <speciesReference species="M_gbbtn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCAL2" name="Carnitine CoA Ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0071</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_crn_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crncoa_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCAR" name="carnitine CoA racemase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0070</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crncoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crnDcoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCBCT" name="crotonobetainyl CoA carnitine CoA transferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0072</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_c" stoichiometry="1"/>
+ <speciesReference species="M_ctbtcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crncoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ctbt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNCDH" name="Carnityl CoA dehydratse" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0070</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crncoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ctbtcoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNDCAL2" name="D Carnitine CoA Ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0071</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_crn__D_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_crnDcoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNDabcpp" name="D carnitine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn__D_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_crn__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNDt2rpp" name="D carnitine outward transport H antiport " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNabcpp" name="L carnitine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_crn_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_crn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNt2rpp" name="L carnitine outward transport H antiport " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNt7pp" name="Carnitinebutyrobetaine antiporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0074</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_c" stoichiometry="1"/>
+ <speciesReference species="M_crn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c" stoichiometry="1"/>
+ <speciesReference species="M_gbbtn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNt8pp" name="L carnitineD carnitine antiporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0074</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn__D_c" stoichiometry="1"/>
+ <speciesReference species="M_crn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c" stoichiometry="1"/>
+ <speciesReference species="M_crn__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CRNtex" name="L carnitine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CS" name="citrate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0730</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CSNtex" name="cytosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTBTCAL2" name="Crotonobetaine CoA Ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0071</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ctbt_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctbtcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTBTabcpp" name="crotonobetaine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ctbt_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctbt_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTBTt2rpp" name="cronobetaine outward transport H antiport " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ctbt_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctbt_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CTPS2" name="CTP synthase glutamine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2953</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_utp_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU1Opp" name="Cuprous Oxidase Cu1 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0168</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_p" stoichiometry="4"/>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ <speciesReference species="M_o2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ <speciesReference species="M_cu2_p" stoichiometry="4"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU1abcpp" name="Copper Cu 1 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0498</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cu_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_cu_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AU1abcpp" name="Gold Au 1 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0353</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_au_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_au_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU2abcpp" name="Copper Cu2 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cu2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_cu2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU2tex" name="copper Cu2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM0320 or STM0999 or STM1473 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CU2tpp" name="copper transport in via permease no H " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CUtex" name="copper Cu1 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYANST" name="Cyanide sulfurtransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3525</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_c" stoichiometry="1"/>
+ <speciesReference species="M_cyan_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_c" stoichiometry="1"/>
+ <speciesReference species="M_tcynt_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYANSTpp" name="Cyanide sulfurtransferase periplasmic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1686</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_p" stoichiometry="1"/>
+ <speciesReference species="M_cyan_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcynt_p" stoichiometry="1"/>
+ <speciesReference species="M_so3_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYANtex" name="Cyanide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cyan_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYNTtex" name="Cyanate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cynt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSDS" name="Cysteine Desulfhydrase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3161</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSDtex" name="D cysteine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSS" name="cysteine synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2430 or STM2440 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_c" stoichiometry="1"/>
+ <speciesReference species="M_acser_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSSADS" name="L cysteine sulfinic acid desulfurase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2984</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3sala_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_c" stoichiometry="1"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSTL" name="cystathionine b lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3161 or STM1557 )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cyst__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hcys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSTRS" name="Cysteinyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0537</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnacys_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cystrna_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSabc2pp" name="L cysteine export via ABC system cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0956 and STM0957 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSabcpp" name="L cysteine uptake via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSIabcpp" name="L cystine uptake via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cysi__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cysi__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYStex" name="L cysteine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSItex" name="L cystine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cysi__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cysi__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYStpp" name="L cysteine export via facilitated transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2645 or STM1517 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTBO3_4pp" name="cytochrome oxidase bo3 ubiquinol 8 4 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0440 and STM0441 and STM0442 and STM0443 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTD" name="cytidine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2183</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cytd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_uri_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDH" name="Cytidine hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0661 or STM0051 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cytd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ <speciesReference species="M_csn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDK2" name="cytidine kinase GTP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2122</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_cytd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDt2pp" name="cytidine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cytd_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDt2rpp" name="cytidine transport in via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_cytd_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTDtex" name="cytidine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTK1" name="cytidylate kinase CMP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0980</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTK2" name="cytidylate kinase dCMP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0980</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_dcdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAAD" name="D Amino acid dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1803</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADA" name="Deoxyadenosine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1463</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dad__2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_din_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADK" name="deoxyadenylate kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_damp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dadp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADNt2pp" name="deoxyadenosine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2409 or STM3113 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DADNtex" name="deoxyadenosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK120" name="diacylglycerol kinase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr120_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa120_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK140" name="diacylglycerol kinase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_12dgr140_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa140_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK141" name="diacylglycerol kinase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr141_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK160" name="diacylglycerol kinase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr160_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa160_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK161" name="diacylglycerol kinase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr161_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa161_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK180" name="diacylglycerol kinase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr180_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa180_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAGK181" name="diacylglycerol kinase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr181_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa181_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DALAt2pp" name="D alanine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DALAtex" name="D Alanine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAMPtex" name="dAMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_damp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPDC" name="diaminopimelate decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3013</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPE" name="diaminopimelate epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3947</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap__LL_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPabcpp" name="M diaminopimelic acid ABC transport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1954</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_26dap__M_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPtex" name="1 5 Diaminopentane transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_15dap_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN120" name="CDP diacylglycerol synthetase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa120_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN140" name="CDP diacylglycerol synthetase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN141" name="CDP diacylglycerol synthetase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa141_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN160" name="CDP diacylglycerol synthetase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN161" name="CDP diacylglycerol synthetase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa161_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN180" name="CDP diacylglycerol synthetase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa180_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DASYN181" name="CDP diacylglycerol synthetase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pa181_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DATPHs" name="dATP amine hydrolysis spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_datp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_ditp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DB4PS" name="3 4 Dihydroxy 2 butanone 4 phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3195</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_db4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DBTS" name="dethiobiotin synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0797 or STM1489 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dann_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_dtbt_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCAtex" name="Decanoate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dca_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCMPtex" name="dCMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCTPD" name="dCTP deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2121</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_dutp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCYTD" name="deoxycytidine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2183</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dcyt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCYTt2pp" name="deoxycytidine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dcyt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DCYTtex" name="deoxycytidine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDCAtexi" name="Fatty acid dodecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGALK" name="2 dehydro 3 deoxygalactonokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3829</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dh3dgal_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dh3dgal6p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGLCNtex" name="2 dehydro 3 deoxy D gluconate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGLK" name="2 dehydro 3 deoxygluconokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3612</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_2ddglcn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddg6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDPA" name="3 deoxy D arabino heptulosonate 7 phosphate synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2670 or STM0760 or STM1347 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_e4p_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dda7p_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGK1" name="deoxyguanylate kinase dGMPATP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3740</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgdp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGMPtex" name="dGMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGSNt2pp" name="deoxyguanosine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DGSNtex" name="deoxyguanosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAD1" name="dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3904</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmb_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_3mob_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAD2" name="Dihydroxy acid dehydratase 2 3 dihydroxy 3 methylpentanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3904</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_3mop_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAtex" name="Dihydroxyacetone transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHAtpp" name="Dihydroxyacetone transport via facilitated diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBD" name="2 3 dihydro 2 3 dihydroxybenzoate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0598</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ddhb_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhb_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBS" name="2 3 dihydroxybenzoate adenylate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0596</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhb_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhba_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHDPRy" name="dihydrodipicolinate reductase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0064</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thdp_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHDPS" name="dihydrodipicolinate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2489</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aspsa_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHFR" name="dihydrofolate reductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0087</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_dhf_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHFS" name="dihydrofolate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2365</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_dhpt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhf_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHNAOT4" name="1 4 dihydroxy 2 naphthoate octaprenyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4090</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octdp_c" stoichiometry="1"/>
+ <speciesReference species="M_dhna_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHNPA2" name="dihydroneopterin aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3206</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhnpt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6hmhpt_c" stoichiometry="1"/>
+ <speciesReference species="M_gcald_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHORD2" name="dihydoorotic acid dehydrogenase quinone8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1058</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhor__S_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_orot_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHORD5" name="dihydroorotic acid menaquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1058</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_dhor__S_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_c" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHORTS" name="dihydroorotase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1163</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhor__S_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbasp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPPDA2" name="diaminohydroxyphosphoribosylaminopryrimidine deaminase 25drapp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0416</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_25drapp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_5apru_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPS2" name="dihydropteroate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3295</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abz_c" stoichiometry="1"/>
+ <speciesReference species="M_6hmhptpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhpt_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHPTDCs" name="4 5 dihydroxy 2 3 pentanedione cyclization spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhptd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmfurn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHQS" name="3 dehydroquinate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3486</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dda7p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhq_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHQTi" name="3 dehydroquinate dehydratase irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1358</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhq_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhsk_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DIMPtex" name="dIMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dimp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DINSt2pp" name="deoxyinosine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DINStex" name="deoxyinosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKGLCNR1" name="2 5 diketo D gluconate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3165 or STM0255 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_25dkglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_2dhguln_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKGLCNR2x" name="2 5 diketo D gluconate reductase NADH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25dkglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKGLCNR2y" name="2 5 diketo D gluconate reductase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25dkglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKMPPD" name="2 3 diketo 5 methylthio 1 phosphopentane degradation reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_dkmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2kmb_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKMPPD3" name="2 3 diketo 5 methylthio 1 phosphopentane degradation reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ <speciesReference species="M_dkmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_2kmb_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMATT" name="dimethylallyltranstransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0423</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_grdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMPPS" name="1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase dmpp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0049</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_h2mb4p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_dmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMQMT" name="3 Dimethylubiquinonol 3 methyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2276</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2omhmbl_c" stoichiometry="1"/>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOtex" name="Dimethyl sulfoxide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmso_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMStex" name="Dimethyl sulfide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dms_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dms_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_4HBA" name="Sink needed to allow 4 hydroxy benzoate to leave system" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hba_c" stoichiometry="1"/>
+ <speciesReference species="M_4hba_c_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_5DRIB" name="Sink needed to allow 5 deoxyribose to leave system" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5drib_c" stoichiometry="1"/>
+ <speciesReference species="M_5drib_c_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_HMFURN" name="Sink needed to allow 4 hydroxy 5 methyl 3 2H furanone to leave system" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hmfurn_c" stoichiometry="1"/>
+ <speciesReference species="M_hmfurn_c_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DM_OXAM" name="Sink needed to allow oxamate to leave system" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oxam_c" stoichiometry="1"/>
+ <speciesReference species="M_oxam_c_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DNMPPA" name="Dihydroneopterin monophosphate dephosphorylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhpmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhnpt_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DNTPPA" name="Dihydroneopterin triphosphate pyrophosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1900 or STM0137 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ahdt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_dhpmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DOGULNR" name="2 3 dioxo L gulonate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3668</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23doguln_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhguln_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DOPAtex" name="dopamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dopa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dopa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DPCOAK" name="dephospho CoA kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0140</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dpcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DRPA" name="deoxyribose phosphate aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4567</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dr5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBAO1" name="DsbA protein reoxidation reaction aerobic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3997 and STM1807 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbard_p" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_dsbaox_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBAO2" name="DsbA protein reoxidation reaction anaerobic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3997 and STM1807 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_dsbard_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbaox_p" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBCGT" name="DsbCglutathione thiotransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3043</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_p" stoichiometry="2"/>
+ <speciesReference species="M_dsbcox_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbcrd_p" stoichiometry="1"/>
+ <speciesReference species="M_gthox_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBDR" name="DsbD reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM4323 and STM3915 ) or ( STM4323 and STM2649 ) )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ <speciesReference species="M_dsbdox_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbdrd_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSBGGT" name="DsbGglutathione thiotransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0607</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbgox_p" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_p" stoichiometry="1"/>
+ <speciesReference species="M_dsbgrd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSERDHr" name="D serine dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1511</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2amsa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSERt2pp" name="D serine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ser__D_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSERtex" name="D serine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DTMPK" name="dTMP kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1200</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_dtmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DTMPtex" name="dTMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DUMPtex" name="dUMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURIK1" name="deoxyuridine kinase ATPDeoxyuridine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1750</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURIPP" name="deoxyuridine phosphorylase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4568 or STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1"/>
+ <speciesReference species="M_ura_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURIt2pp" name="deoxyuridine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2409 or STM3113 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DURItex" name="deoxyuridine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DUTPDP" name="dUTP diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3731</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dutp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_dump_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXPRIi" name="1 deoxy D xylulose reductoisomerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0220</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_2me4p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXPS" name="1 deoxy D xylulose 5 phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0422</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXYLK" name="1 Deoxy D xylulose kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3660</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_D_LACt2pp" name="D lactate transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3692</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_D_LACtex" name="D lactate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_E4PD" name="Erythrose 4 phosphate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3070</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_e4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4per_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR100x" name="enoyl acyl carrier protein reductase NADH n C100 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR100y" name="enoyl acyl carrier protein reductase NADPH n C100 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR120x" name="enoyl acyl carrier protein reductase NADH n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tddec2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR120y" name="enoyl acyl carrier protein reductase NADPH n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_tddec2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR121x" name="enoyl acyl carrier protein reductase NADH n C121 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cddec5eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR121y" name="enoyl acyl carrier protein reductase NADPH n C121 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cddec5eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR140x" name="enoyl acyl carrier protein reductase NADH n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmrs2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR140y" name="enoyl acyl carrier protein reductase NADPH n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_tmrs2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR141x" name="enoyl acyl carrier protein reductase NADH n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR141y" name="enoyl acyl carrier protein reductase NADPH n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR160x" name="enoyl acyl carrier protein reductase NADH n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tpalm2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_palmACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR160y" name="enoyl acyl carrier protein reductase NADPH n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tpalm2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_palmACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR161x" name="enoyl acyl carrier protein reductase NADH n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR161y" name="enoyl acyl carrier protein reductase NADPH n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR180x" name="enoyl acyl carrier protein reductase NADH n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_toctd2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR180y" name="enoyl acyl carrier protein reductase NADPH n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_toctd2eACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR181x" name="enoyl acyl carrier protein reductase NADH n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR181y" name="enoyl acyl carrier protein reductase NADPH n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR40x" name="enoyl acyl carrier protein reductase NADH n C40 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_butACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR40y" name="enoyl acyl carrier protein reductase NADPH n C40 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_butACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR60x" name="enoyl acyl carrier protein reductase NADH n C60 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thex2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hexACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR60y" name="enoyl acyl carrier protein reductase NADPH n C60 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thex2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hexACP_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR80x" name="enoyl acyl carrier protein reductase NADH n C80 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_toct2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_ocACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EAR80y" name="enoyl acyl carrier protein reductase NADPH n C80 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_toct2eACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_ocACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECA4COLIPAtex" name="enterobacterial common antigen x4 core oligosaccharide lipid A transport periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca4colipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4colipa_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECA4OALpp" name="enterobacterial common antigen x4 O antigen ligase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3713</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca4und_p" stoichiometry="1"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4colipa_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAP1pp" name="enterobacterial common antigen polymerase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca2und_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAP2pp" name="enterobacterial common antigen polymerase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca2und_p" stoichiometry="1"/>
+ <speciesReference species="M_unagamuf_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_eca3und_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAP3pp" name="enterobacterial common antigen polymerase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_p" stoichiometry="1"/>
+ <speciesReference species="M_eca3und_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_eca4und_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECAtpp" name="enterobacterial common antigen transferase flippase cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3926</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_unagamuf_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH1" name="3 hydroxyacyl CoA dehydratase 3 hydroxybutanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hbcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_b2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH2" name="3 hydroxyacyl CoA dehydratase 3 hydroxyhexanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_hx2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH3" name="3 hydroxyacyl CoA dehydratase 3 hydroxyoctanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2388 or STM3983 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hocoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oc2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH4" name="3 hydroxyacyl CoA dehydratase 3 hydroxydecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hdcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dc2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH5" name="3 hydroxyacyl CoA dehydratase 3 hydroxydodecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dd2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH6" name="3 hydroxyacyl CoA dehydratase 3 hydroxytetradecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3htdcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_td2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH7" name="3 hydroxyacyl CoA dehydratase 3 hydroxyhexadecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhdcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdd2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ECOAH8" name="3 hydroxyacyl CoA dehydratase 3 hydroxyoctadecanoyl CoA " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hodcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_od2coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDA" name="2 dehydro 3 deoxy phosphogluconate aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1884</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddg6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDD" name="6 phosphogluconate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1885</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6pgc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddg6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS1" name="Endotoxin Synthesis lauroyl transferase " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1155</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_kdo2lipid4L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS2" name="Endotoxin Synthesis myristoyl transferase " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1889</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4L_c" stoichiometry="1"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_lipa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS3" name="Endotoxin Synthesis palmitoleoyl ACP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2401</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_kdo2lipid4p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EDTXS4" name="Endotoxin Synthesis myristoyl transferase " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1889</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_kdo2lipid4p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_lipa__cold_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENLIPAtex" name="phosphoethanolamine lipid A transport via vector periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enlipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enlipa_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENO" name="enolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2952</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTCS" name="enterochelin synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0584</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_seramp_c" stoichiometry="3"/>
+ <speciesReference species="M_23dhba_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="9"/>
+ <speciesReference species="M_amp_c" stoichiometry="6"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHAAL" name="Ethanolamine ammonia lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2457 and STM2458 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHAt2pp" name="ethanolamine transport in via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2460</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHAtex" name="ethanolamine transport via diffusion extracellular " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETHSO3tex" name="ethanesulfonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ethso3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ethso3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETOHt2rpp" name="ethanol reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_etoh_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etoh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ETOHtex" name="ethanol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etoh_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_chitob_e" name="Chitobiose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chitob_e" stoichiometry="1"/>
+ <speciesReference species="M_chitob_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pydxn_e" name="Pyridoxine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_e" stoichiometry="1"/>
+ <speciesReference species="M_pydxn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pydx_e" name="Pyridoxal exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_e" stoichiometry="1"/>
+ <speciesReference species="M_pydx_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_12ppd__R_e" name=" R Propane 1 2 diol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_e" stoichiometry="1"/>
+ <speciesReference species="M_12ppd__R_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_12ppd__S_e" name=" S Propane 1 2 diol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_e" stoichiometry="1"/>
+ <speciesReference species="M_12ppd__S_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_14glucan_e" name="1 4 alpha D glucan exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_e" stoichiometry="1"/>
+ <speciesReference species="M_14glucan_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_15dap_e" name="1 5 Diaminopentane exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_e" stoichiometry="1"/>
+ <speciesReference species="M_15dap_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23camp_e" name="2 3 Cyclic AMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23camp_e" stoichiometry="1"/>
+ <speciesReference species="M_23camp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23ccmp_e" name="2 3 Cyclic CMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_e" stoichiometry="1"/>
+ <speciesReference species="M_23ccmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23cgmp_e" name="2 3 Cyclic GMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cgmp_e" stoichiometry="1"/>
+ <speciesReference species="M_23cgmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23cump_e" name="2 3 Cyclic UMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_e" stoichiometry="1"/>
+ <speciesReference species="M_23cump_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23dappa_e" name="2 3 diaminopropionate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_e" stoichiometry="1"/>
+ <speciesReference species="M_23dappa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_26dap__M_e" name="meso 2 6 Diaminoheptanedioate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap__M_e" stoichiometry="1"/>
+ <speciesReference species="M_26dap__M_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_2ddglcn_e" name="2 Dehydro 3 deoxy D gluconate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_e" stoichiometry="1"/>
+ <speciesReference species="M_2ddglcn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_34dhpac_e" name="3 4 Dihydroxyphenylacetaldehyde exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpac_e" stoichiometry="1"/>
+ <speciesReference species="M_34dhpac_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3amp_e" name="3 AMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_e" stoichiometry="1"/>
+ <speciesReference species="M_3amp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3cmp_e" name="3 cmp exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_e" stoichiometry="1"/>
+ <speciesReference species="M_3cmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3gmp_e" name="3 GMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_e" stoichiometry="1"/>
+ <speciesReference species="M_3gmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3hcinnm_e" name="3 hydroxycinnamic acid exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_e" stoichiometry="1"/>
+ <speciesReference species="M_3hcinnm_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3hpppn_e" name="3 3 hydroxy phenyl propionate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_e" stoichiometry="1"/>
+ <speciesReference species="M_3hpppn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3ump_e" name="3 UMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_e" stoichiometry="1"/>
+ <speciesReference species="M_3ump_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_4abut_e" name="4 Aminobutanoate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_e" stoichiometry="1"/>
+ <speciesReference species="M_4abut_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_4hoxpacd_e" name="4 Hydroxyphenylacetaldehyde exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpacd_e" stoichiometry="1"/>
+ <speciesReference species="M_4hoxpacd_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_5dglcn_e" name="5 Dehydro D gluconate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_e" stoichiometry="1"/>
+ <speciesReference species="M_5dglcn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_LalaDgluMdapDala_e" name="L alanine D glutamate meso 2 6 diaminoheptanedioate D alanine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_e" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdapDala_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_LalaDgluMdap_e" name="L alanine D glutamate meso 2 6 diaminoheptanedioate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_e" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdap_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ac_e" name="Acetate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_e" stoichiometry="1"/>
+ <speciesReference species="M_ac_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acac_e" name="Acetoacetate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_e" stoichiometry="1"/>
+ <speciesReference species="M_acac_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acald_e" name="Acetaldehyde exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_e" stoichiometry="1"/>
+ <speciesReference species="M_acald_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgal1p_e" name="N Acetyl D galactosamine 1 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_e" stoichiometry="1"/>
+ <speciesReference species="M_acgal1p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgal_e" name="N Acetyl D galactosamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal_e" stoichiometry="1"/>
+ <speciesReference species="M_acgal_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgam1p_e" name="N Acetyl D glucosamine 1 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_e" stoichiometry="1"/>
+ <speciesReference species="M_acgam1p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acgam_e" name="N Acetyl D glucosamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_e" stoichiometry="1"/>
+ <speciesReference species="M_acgam_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acmana_e" name="N Acetyl D mannosamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_e" stoichiometry="1"/>
+ <speciesReference species="M_acmana_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acmum_e" name="N Acetylmuramate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum_e" stoichiometry="1"/>
+ <speciesReference species="M_acmum_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acnam_e" name="N Acetylneuraminate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_e" stoichiometry="1"/>
+ <speciesReference species="M_acnam_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acolipa_e" name="4 Amino 4 deoxy L arabinose modified core oligosaccharide lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acolipa_e" stoichiometry="1"/>
+ <speciesReference species="M_acolipa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acser_e" name="O Acetyl L serine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_e" stoichiometry="1"/>
+ <speciesReference species="M_acser_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ade_e" name="Adenine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_e" stoichiometry="1"/>
+ <speciesReference species="M_ade_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_adn_e" name="Adenosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_e" stoichiometry="1"/>
+ <speciesReference species="M_adn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_adocbl_e" name="Adenosylcobalamin exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbl_e" stoichiometry="1"/>
+ <speciesReference species="M_adocbl_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ag_e" name="silver exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ag_e" stoichiometry="1"/>
+ <speciesReference species="M_ag_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_agm_e" name="Agmatine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_e" stoichiometry="1"/>
+ <speciesReference species="M_agm_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_akg_e" name="2 Oxoglutarate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_e" stoichiometry="1"/>
+ <speciesReference species="M_akg_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ala__B_e" name="beta Alanine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__B_e" stoichiometry="1"/>
+ <speciesReference species="M_ala__B_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ala__D_e" name="D Alanine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_e" stoichiometry="1"/>
+ <speciesReference species="M_ala__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ala__L_e" name="L Alanine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_e" stoichiometry="1"/>
+ <speciesReference species="M_ala__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_alaala_e" name="D Alanyl D alanine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_e" stoichiometry="1"/>
+ <speciesReference species="M_alaala_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_all__D_e" name="D Allose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all__D_e" stoichiometry="1"/>
+ <speciesReference species="M_all__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_alltn_e" name="Allantoin exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_e" stoichiometry="1"/>
+ <speciesReference species="M_alltn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_amp_e" name="AMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_e" stoichiometry="1"/>
+ <speciesReference species="M_amp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_anhgm_e" name="N Acetyl D glucosamine anhydrous N Acetylmuramic acid exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_e" stoichiometry="1"/>
+ <speciesReference species="M_anhgm_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arab__L_e" name="L Arabinose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_e" stoichiometry="1"/>
+ <speciesReference species="M_arab__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arbtn_e" name="aerobactin minus Fe3 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_e" stoichiometry="1"/>
+ <speciesReference species="M_arbtn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arbtn__fe3_e" name="Aerobactin exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_e" stoichiometry="1"/>
+ <speciesReference species="M_arbtn__fe3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_arg__L_e" name="L Arginine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_e" stoichiometry="1"/>
+ <speciesReference species="M_arg__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ascb__L_e" name="L Ascorbate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb__L_e" stoichiometry="1"/>
+ <speciesReference species="M_ascb__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_asn__L_e" name="L Asparagine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_e" stoichiometry="1"/>
+ <speciesReference species="M_asn__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_aso3_e" name="arsenite exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso3_e" stoichiometry="1"/>
+ <speciesReference species="M_aso3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_asp__L_e" name="L Aspartate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_e" stoichiometry="1"/>
+ <speciesReference species="M_asp__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_but_e" name="Butyrate n C40 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but_e" stoichiometry="1"/>
+ <speciesReference species="M_but_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_butso3_e" name="butanesulfonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butso3_e" stoichiometry="1"/>
+ <speciesReference species="M_butso3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ca2_e" name="Calcium exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_e" stoichiometry="1"/>
+ <speciesReference species="M_ca2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cbi_e" name="Cobinamide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_e" stoichiometry="1"/>
+ <speciesReference species="M_cbi_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cbl1_e" name="Cob I alamin exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbl1_e" stoichiometry="1"/>
+ <speciesReference species="M_cbl1_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cd2_e" name="Cadmium exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_e" stoichiometry="1"/>
+ <speciesReference species="M_cd2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cgly_e" name="Cys Gly exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_e" stoichiometry="1"/>
+ <speciesReference species="M_cgly_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_chol_e" name="Choline exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_e" stoichiometry="1"/>
+ <speciesReference species="M_chol_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cit_e" name="Citrate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_e" stoichiometry="1"/>
+ <speciesReference species="M_cit_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.0005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_icit_e" name="Isocitrate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_e" stoichiometry="1"/>
+ <speciesReference species="M_icit_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_acon__C_e" name="cisaconitate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__C_e" stoichiometry="1"/>
+ <speciesReference species="M_acon__C_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cl_e" name="Chloride exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cl_e" stoichiometry="1"/>
+ <speciesReference species="M_cl_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-5.016" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cmp_e" name="CMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_e" stoichiometry="1"/>
+ <speciesReference species="M_cmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_co2_e" name="CO2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_e" stoichiometry="1"/>
+ <speciesReference species="M_co2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-18.5" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cobalt2_e" name="Co2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_e" stoichiometry="1"/>
+ <speciesReference species="M_cobalt2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_colipa_e" name="core oligosaccharide lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_e" stoichiometry="1"/>
+ <speciesReference species="M_colipa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cpgn_e" name="coprogen exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_e" stoichiometry="1"/>
+ <speciesReference species="M_cpgn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cpgn__un_e" name="coprogen unloaded no Fe III exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn__un_e" stoichiometry="1"/>
+ <speciesReference species="M_cpgn__un_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_crn_e" name="L Carnitine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_e" stoichiometry="1"/>
+ <speciesReference species="M_crn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_csn_e" name="Cytosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_e" stoichiometry="1"/>
+ <speciesReference species="M_csn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cu2_e" name="Cu2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_e" stoichiometry="1"/>
+ <speciesReference species="M_cu2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cu_e" name="Cu exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_e" stoichiometry="1"/>
+ <speciesReference species="M_cu_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cyan_e" name="Hydrogen cyanide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_e" stoichiometry="1"/>
+ <speciesReference species="M_cyan_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cynt_e" name="Cyanate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_e" stoichiometry="1"/>
+ <speciesReference species="M_cynt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cys__D_e" name="D Cysteine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__D_e" stoichiometry="1"/>
+ <speciesReference species="M_cys__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cys__L_e" name="L Cysteine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_e" stoichiometry="1"/>
+ <speciesReference species="M_cys__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cysi__L_e" name="L Cystine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cysi__L_e" stoichiometry="1"/>
+ <speciesReference species="M_cysi__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_cytd_e" name="Cytidine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_e" stoichiometry="1"/>
+ <speciesReference species="M_cytd_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dad__2_e" name="Deoxyadenosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_e" stoichiometry="1"/>
+ <speciesReference species="M_dad__2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_damp_e" name="dAMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_e" stoichiometry="1"/>
+ <speciesReference species="M_damp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dca_e" name="Decanoate n C100 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dca_e" stoichiometry="1"/>
+ <speciesReference species="M_dca_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dcmp_e" name="dCMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_e" stoichiometry="1"/>
+ <speciesReference species="M_dcmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dcyt_e" name="Deoxycytidine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_e" stoichiometry="1"/>
+ <speciesReference species="M_dcyt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ddca_e" name="Dodecanoate n C120 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_e" stoichiometry="1"/>
+ <speciesReference species="M_ddca_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dgmp_e" name="dGMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_e" stoichiometry="1"/>
+ <speciesReference species="M_dgmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dgsn_e" name="Deoxyguanosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_e" stoichiometry="1"/>
+ <speciesReference species="M_dgsn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dha_e" name="Dihydroxyacetone exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_e" stoichiometry="1"/>
+ <speciesReference species="M_dha_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dimp_e" name="dIMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_e" stoichiometry="1"/>
+ <speciesReference species="M_dimp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_din_e" name="Deoxyinosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_e" stoichiometry="1"/>
+ <speciesReference species="M_din_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dms_e" name="Dimethyl sulfide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dms_e" stoichiometry="1"/>
+ <speciesReference species="M_dms_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dmso_e" name="Dimethyl sulfoxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_e" stoichiometry="1"/>
+ <speciesReference species="M_dmso_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dopa_e" name="Dopamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dopa_e" stoichiometry="1"/>
+ <speciesReference species="M_dopa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dtmp_e" name="dTMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_e" stoichiometry="1"/>
+ <speciesReference species="M_dtmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dump_e" name="dUMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_e" stoichiometry="1"/>
+ <speciesReference species="M_dump_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_duri_e" name="Deoxyuridine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_e" stoichiometry="1"/>
+ <speciesReference species="M_duri_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_eca4colipa_e" name=" enterobacterial common antigen x4 core oligosaccharide lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca4colipa_e" stoichiometry="1"/>
+ <speciesReference species="M_eca4colipa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_enlipa_e" name="phosphoethanolamine KDO 2 lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enlipa_e" stoichiometry="1"/>
+ <speciesReference species="M_enlipa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_enter_e" name="Enterochelin exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_e" stoichiometry="1"/>
+ <speciesReference species="M_enter_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_etha_e" name="Ethanolamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_e" stoichiometry="1"/>
+ <speciesReference species="M_etha_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ethso3_e" name="ethanesulfonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ethso3_e" stoichiometry="1"/>
+ <speciesReference species="M_ethso3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_etoh_e" name="Ethanol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_e" stoichiometry="1"/>
+ <speciesReference species="M_etoh_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_f6p_e" name="D fructose 6 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_e" stoichiometry="1"/>
+ <speciesReference species="M_f6p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fald_e" name="Formaldehyde exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_e" stoichiometry="1"/>
+ <speciesReference species="M_fald_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe2_e" name="Fe2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_e" stoichiometry="1"/>
+ <speciesReference species="M_fe2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3_e" name="Fe3 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3dcit_e" name="Fe III dicitrate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dcit_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3dcit_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3dhbzs_e" name="ferric 2 3 dihydroxybenzoylserine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3dhbzs_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3hox_e" name="Fe III hydroxamate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3hox__un_e" name="Fe III hydoxamate unloaded exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox__un_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox__un_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fecrm_e" name="Ferrichrome exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_e" stoichiometry="1"/>
+ <speciesReference species="M_fecrm_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fecrm__un_e" name="Ferrichrome minus Fe III exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_e" stoichiometry="1"/>
+ <speciesReference species="M_fecrm__un_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feenter_e" name="Fe enterobactin exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_e" stoichiometry="1"/>
+ <speciesReference species="M_feenter_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feoxam_e" name="ferroxamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_e" stoichiometry="1"/>
+ <speciesReference species="M_feoxam_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feoxam__un_e" name="ferroxamine minus Fe 3 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam__un_e" stoichiometry="1"/>
+ <speciesReference species="M_feoxam__un_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_for_e" name="Formate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_e" stoichiometry="1"/>
+ <speciesReference species="M_for_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fru_e" name="D Fructose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_e" stoichiometry="1"/>
+ <speciesReference species="M_fru_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_frulys_e" name="fructoselysine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulys_e" stoichiometry="1"/>
+ <speciesReference species="M_frulys_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fruur_e" name="D Fructuronate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fruur_e" stoichiometry="1"/>
+ <speciesReference species="M_fruur_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fuc__L_e" name="L Fucose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc__L_e" stoichiometry="1"/>
+ <speciesReference species="M_fuc__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fum_e" name="Fumarate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_e" stoichiometry="1"/>
+ <speciesReference species="M_fum_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g1p_e" name="D Glucose 1 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_e" stoichiometry="1"/>
+ <speciesReference species="M_g1p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pc_e" name="sn Glycero 3 phosphocholine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_e" stoichiometry="1"/>
+ <speciesReference species="M_g3pc_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pe_e" name="sn Glycero 3 phosphoethanolamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_e" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pg_e" name="Glycerophosphoglycerol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_e" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3pi_e" name="sn Glycero 3 phospho 1 inositol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_e" stoichiometry="1"/>
+ <speciesReference species="M_g3pi_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g3ps_e" name="Glycerophosphoserine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_e" stoichiometry="1"/>
+ <speciesReference species="M_g3ps_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_g6p_e" name="D Glucose 6 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_e" stoichiometry="1"/>
+ <speciesReference species="M_g6p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gal1p_e" name="alpha D Galactose 1 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_e" stoichiometry="1"/>
+ <speciesReference species="M_gal1p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gal__bD_e" name="beta D Galactose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal__bD_e" stoichiometry="1"/>
+ <speciesReference species="M_gal__bD_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gal_e" name="D Galactose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_e" stoichiometry="1"/>
+ <speciesReference species="M_gal_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galct__D_e" name="D Galactarate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct__D_e" stoichiometry="1"/>
+ <speciesReference species="M_galct__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galctn__D_e" name="D Galactonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_e" stoichiometry="1"/>
+ <speciesReference species="M_galctn__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galctn__L_e" name="L Galactonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__L_e" stoichiometry="1"/>
+ <speciesReference species="M_galctn__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galt_e" name="Galactitol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_e" stoichiometry="1"/>
+ <speciesReference species="M_galt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_galur_e" name="D Galacturonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_e" stoichiometry="1"/>
+ <speciesReference species="M_galur_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gam6p_e" name="D Glucosamine 6 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_e" stoichiometry="1"/>
+ <speciesReference species="M_gam6p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gam_e" name="D Glucosamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_e" stoichiometry="1"/>
+ <speciesReference species="M_gam_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gbbtn_e" name="gamma butyrobetaine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_e" stoichiometry="1"/>
+ <speciesReference species="M_gbbtn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gdp_e" name="GDP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_e" stoichiometry="1"/>
+ <speciesReference species="M_gdp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glc__D_e" name="D Glucose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_e" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcn_e" name="D Gluconate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_e" stoichiometry="1"/>
+ <speciesReference species="M_glcn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcr_e" name="D Glucarate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_e" stoichiometry="1"/>
+ <speciesReference species="M_glcr_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcur1p_e" name="D Glucuronate 1 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_e" stoichiometry="1"/>
+ <speciesReference species="M_glcur1p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glcur_e" name="D Glucuronate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_e" stoichiometry="1"/>
+ <speciesReference species="M_glcur_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gln__L_e" name="L Glutamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_e" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glu__L_e" name="L Glutamate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_e" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gly_e" name="Glycine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_e" stoichiometry="1"/>
+ <speciesReference species="M_gly_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyald_e" name="D Glyceraldehyde exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_e" stoichiometry="1"/>
+ <speciesReference species="M_glyald_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyb_e" name="Glycine betaine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e" stoichiometry="1"/>
+ <speciesReference species="M_glyb_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc2p_e" name="Glycerol 2 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_e" stoichiometry="1"/>
+ <speciesReference species="M_glyc2p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc3p_e" name="Glycerol 3 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_e" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc__R_e" name=" R Glycerate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_e" stoichiometry="1"/>
+ <speciesReference species="M_glyc__R_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyc_e" name="Glycerol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_e" stoichiometry="1"/>
+ <speciesReference species="M_glyc_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-41.0468020414812" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_glyclt_e" name="Glycolate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_e" stoichiometry="1"/>
+ <speciesReference species="M_glyclt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gmp_e" name="GMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_e" stoichiometry="1"/>
+ <speciesReference species="M_gmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gsn_e" name="Guanosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_e" stoichiometry="1"/>
+ <speciesReference species="M_gsn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gthox_e" name="Oxidized glutathione exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_e" stoichiometry="1"/>
+ <speciesReference species="M_gthox_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gthrd_e" name="Reduced glutathione exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_e" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gtp_e" name="GTP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_e" stoichiometry="1"/>
+ <speciesReference species="M_gtp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_gua_e" name="Guanine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_e" stoichiometry="1"/>
+ <speciesReference species="M_gua_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2_e" name="H2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_e" stoichiometry="1"/>
+ <speciesReference species="M_h2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2o2_e" name="Hydrogen peroxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_e" stoichiometry="1"/>
+ <speciesReference species="M_h2o2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2o_e" name="H2O exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e" stoichiometry="1"/>
+ <speciesReference species="M_h2o_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h2s_e" name="Hydrogen sulfide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_e" stoichiometry="1"/>
+ <speciesReference species="M_h2s_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_h_e" name="H exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_h_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-100" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hacolipa_e" name="hepta acylated core oligosaccharide lipid A E coli exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hacolipa_e" stoichiometry="1"/>
+ <speciesReference species="M_hacolipa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_halipa_e" name="hepta acylated KDO 2 lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_halipa_e" stoichiometry="1"/>
+ <speciesReference species="M_halipa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hdca_e" name="Hexadecanoate n C160 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_e" stoichiometry="1"/>
+ <speciesReference species="M_hdca_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hdcea_e" name="hexadecenoate n C161 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcea_e" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hg2_e" name="Hg2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hg2_e" stoichiometry="1"/>
+ <speciesReference species="M_hg2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_his__L_e" name="L Histidine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_e" stoichiometry="1"/>
+ <speciesReference species="M_his__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hom__L_e" name="L Homoserine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom__L_e" stoichiometry="1"/>
+ <speciesReference species="M_hom__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hxa_e" name="Hexanoate n C60 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxa_e" stoichiometry="1"/>
+ <speciesReference species="M_hxa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_hxan_e" name="Hypoxanthine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_e" stoichiometry="1"/>
+ <speciesReference species="M_hxan_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_idon__L_e" name="L Idonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_idon__L_e" stoichiometry="1"/>
+ <speciesReference species="M_idon__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ile__L_e" name="L Isoleucine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_e" stoichiometry="1"/>
+ <speciesReference species="M_ile__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_imp_e" name="IMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_e" stoichiometry="1"/>
+ <speciesReference species="M_imp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_indole_e" name="Indole exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_e" stoichiometry="1"/>
+ <speciesReference species="M_indole_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_inost_e" name="myo Inositol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_e" stoichiometry="1"/>
+ <speciesReference species="M_inost_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ins_e" name="Inosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_e" stoichiometry="1"/>
+ <speciesReference species="M_ins_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_isetac_e" name="Isethionic acid exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_isetac_e" stoichiometry="1"/>
+ <speciesReference species="M_isetac_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_k_e" name="K exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_e" stoichiometry="1"/>
+ <speciesReference species="M_k_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-6" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_kdo2lipid4_e" name="KDO 2 lipid IV A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4_e" stoichiometry="1"/>
+ <speciesReference species="M_kdo2lipid4_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lac__D_e" name="D lactate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_e" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lac__L_e" name="L Lactate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__L_e" stoichiometry="1"/>
+ <speciesReference species="M_lac__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lcts_e" name="Lactose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lcts_e" stoichiometry="1"/>
+ <speciesReference species="M_lcts_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_leu__L_e" name="L Leucine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_e" stoichiometry="1"/>
+ <speciesReference species="M_leu__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lipa__cold_e" name="cold adapted KDO 2 lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa__cold_e" stoichiometry="1"/>
+ <speciesReference species="M_lipa__cold_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lipa_e" name="KDO 2 lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_e" stoichiometry="1"/>
+ <speciesReference species="M_lipa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lys__L_e" name="L Lysine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_e" stoichiometry="1"/>
+ <speciesReference species="M_lys__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_lyx__L_e" name="L Lyxose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx__L_e" stoichiometry="1"/>
+ <speciesReference species="M_lyx__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mal__D_e" name="D Malate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__D_e" stoichiometry="1"/>
+ <speciesReference species="M_mal__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mal__L_e" name="L Malate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_e" stoichiometry="1"/>
+ <speciesReference species="M_mal__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_malt_e" name="Maltose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_e" stoichiometry="1"/>
+ <speciesReference species="M_malt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_malthx_e" name="Maltohexaose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_e" stoichiometry="1"/>
+ <speciesReference species="M_malthx_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_maltpt_e" name="Maltopentaose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_e" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_malttr_e" name="Maltotriose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_e" stoichiometry="1"/>
+ <speciesReference species="M_malttr_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_maltttr_e" name="Maltotetraose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_e" stoichiometry="1"/>
+ <speciesReference species="M_maltttr_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_man6p_e" name="D Mannose 6 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_e" stoichiometry="1"/>
+ <speciesReference species="M_man6p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_man_e" name="D Mannose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_e" stoichiometry="1"/>
+ <speciesReference species="M_man_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_manglyc_e" name="2 alpha D Mannosyl D glycerate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_manglyc_e" stoichiometry="1"/>
+ <speciesReference species="M_manglyc_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_melib_e" name="Melibiose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_e" stoichiometry="1"/>
+ <speciesReference species="M_melib_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_met__D_e" name="D Methionine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__D_e" stoichiometry="1"/>
+ <speciesReference species="M_met__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_met__L_e" name="L Methionine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_e" stoichiometry="1"/>
+ <speciesReference species="M_met__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_metsox__R__L_e" name="L methionine R sulfoxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__R__L_e" stoichiometry="1"/>
+ <speciesReference species="M_metsox__R__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_metsox__S__L_e" name="L Methionine S oxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__S__L_e" stoichiometry="1"/>
+ <speciesReference species="M_metsox__S__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mg2_e" name="Mg exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_e" stoichiometry="1"/>
+ <speciesReference species="M_mg2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.008" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_minohp_e" name="myo Inositol hexakisphosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_minohp_e" stoichiometry="1"/>
+ <speciesReference species="M_minohp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mmet_e" name="S Methyl L methionine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmet_e" stoichiometry="1"/>
+ <speciesReference species="M_mmet_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mn2_e" name="Mn2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_e" stoichiometry="1"/>
+ <speciesReference species="M_mn2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mnl_e" name="D Mannitol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl_e" stoichiometry="1"/>
+ <speciesReference species="M_mnl_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mobd_e" name="Molybdate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mobd_e" stoichiometry="1"/>
+ <speciesReference species="M_mobd_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_mso3_e" name="methanesulfonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mso3_e" stoichiometry="1"/>
+ <speciesReference species="M_mso3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_n2o_e" name="Nitrous oxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_e" stoichiometry="1"/>
+ <speciesReference species="M_n2o_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_na1_e" name="Sodium exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_e" stoichiometry="1"/>
+ <speciesReference species="M_na1_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_nac_e" name="Nicotinate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_e" stoichiometry="1"/>
+ <speciesReference species="M_nac_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_nh4_e" name="Ammonia exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_e" stoichiometry="1"/>
+ <speciesReference species="M_nh4_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-15" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ni2_e" name="Ni2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_e" stoichiometry="1"/>
+ <speciesReference species="M_ni2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_nmn_e" name="NMN exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_e" stoichiometry="1"/>
+ <speciesReference species="M_nmn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_no2_e" name="Nitrite exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_e" stoichiometry="1"/>
+ <speciesReference species="M_no2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_no3_e" name="Nitrate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_e" stoichiometry="1"/>
+ <speciesReference species="M_no3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_no_e" name="Nitric oxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_e" stoichiometry="1"/>
+ <speciesReference species="M_no_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_o2_e" name="O2 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_e" stoichiometry="1"/>
+ <speciesReference species="M_o2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-18.5" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_o2s_e" name="Superoxide anion exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_e" stoichiometry="1"/>
+ <speciesReference species="M_o2s_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ocdca_e" name="octadecanoate n C180 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_e" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ocdcea_e" name="octadecenoate n C181 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_e" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_octa_e" name="octanoate n C80 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octa_e" stoichiometry="1"/>
+ <speciesReference species="M_octa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_orn_e" name="Ornithine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_e" stoichiometry="1"/>
+ <speciesReference species="M_orn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_orot_e" name="Orotate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_e" stoichiometry="1"/>
+ <speciesReference species="M_orot_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_oaa_e" name="Oxaloacetate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oaa_e" stoichiometry="1"/>
+ <speciesReference species="M_oaa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pacald_e" name="Phenylacetaldehyde exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pacald_e" stoichiometry="1"/>
+ <speciesReference species="M_pacald_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_peamn_e" name="Phenethylamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_peamn_e" stoichiometry="1"/>
+ <speciesReference species="M_peamn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_phe__L_e" name="L Phenylalanine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_e" stoichiometry="1"/>
+ <speciesReference species="M_phe__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pheme_e" name="Protoheme exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_e" stoichiometry="1"/>
+ <speciesReference species="M_pheme_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pi_e" name="Phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_e" stoichiometry="1"/>
+ <speciesReference species="M_pi_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.337" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pnto__R_e" name=" R Pantothenate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto__R_e" stoichiometry="1"/>
+ <speciesReference species="M_pnto__R_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ppa_e" name="Propionate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_e" stoichiometry="1"/>
+ <speciesReference species="M_ppa_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ppal_e" name="Propanal exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_e" stoichiometry="1"/>
+ <speciesReference species="M_ppal_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pppn_e" name="Phenylpropanoate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppn_e" stoichiometry="1"/>
+ <speciesReference species="M_pppn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ppt_e" name="Phosphonate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppt_e" stoichiometry="1"/>
+ <speciesReference species="M_ppt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pro__L_e" name="L Proline exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_e" stoichiometry="1"/>
+ <speciesReference species="M_pro__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_progly_e" name="L Prolinylglycine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_e" stoichiometry="1"/>
+ <speciesReference species="M_progly_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_psclys_e" name="psicoselysine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_psclys_e" stoichiometry="1"/>
+ <speciesReference species="M_psclys_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pser__L_e" name="O Phospho L serine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pser__L_e" stoichiometry="1"/>
+ <speciesReference species="M_pser__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ptrc_e" name="Putrescine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_e" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pyr_e" name="Pyruvate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_e" stoichiometry="1"/>
+ <speciesReference species="M_pyr_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_r5p_e" name="alpha D Ribose 5 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_e" stoichiometry="1"/>
+ <speciesReference species="M_r5p_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_rib__D_e" name="D Ribose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rib__D_e" stoichiometry="1"/>
+ <speciesReference species="M_rib__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_rmn_e" name="L Rhamnose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_e" stoichiometry="1"/>
+ <speciesReference species="M_rmn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_sbt__D_e" name="D Sorbitol exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt__D_e" stoichiometry="1"/>
+ <speciesReference species="M_sbt__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ser__D_e" name="D Serine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__D_e" stoichiometry="1"/>
+ <speciesReference species="M_ser__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ser__L_e" name="L Serine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_e" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_skm_e" name="Shikimate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_skm_e" stoichiometry="1"/>
+ <speciesReference species="M_skm_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_so2_e" name="sulfur dioxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_e" stoichiometry="1"/>
+ <speciesReference species="M_so2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_so3_e" name="Sulfite exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so3_e" stoichiometry="1"/>
+ <speciesReference species="M_so3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_so4_e" name="Sulfate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_e" stoichiometry="1"/>
+ <speciesReference species="M_so4_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_spmd_e" name="Spermidine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_e" stoichiometry="1"/>
+ <speciesReference species="M_spmd_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_succ_e" name="Succinate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_e" stoichiometry="1"/>
+ <speciesReference species="M_succ_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_sucr_e" name="Sucrose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucr_e" stoichiometry="1"/>
+ <speciesReference species="M_sucr_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_sulfac_e" name="sulfoacetate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sulfac_e" stoichiometry="1"/>
+ <speciesReference species="M_sulfac_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tartr__L_e" name="L tartrate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_e" stoichiometry="1"/>
+ <speciesReference species="M_tartr__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_taur_e" name="Taurine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_taur_e" stoichiometry="1"/>
+ <speciesReference species="M_taur_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tcynt_e" name="Thiocyanate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcynt_e" stoichiometry="1"/>
+ <speciesReference species="M_tcynt_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thm_e" name="Thiamin exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_e" stoichiometry="1"/>
+ <speciesReference species="M_thm_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-2.96498354434133e-08" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thr__L_e" name="L Threonine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_e" stoichiometry="1"/>
+ <speciesReference species="M_thr__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thrp_e" name="L Threonine O 3 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_e" stoichiometry="1"/>
+ <speciesReference species="M_thrp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thym_e" name="Thymine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_e" stoichiometry="1"/>
+ <speciesReference species="M_thym_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_thymd_e" name="Thymidine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_e" stoichiometry="1"/>
+ <speciesReference species="M_thymd_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tma_e" name="Trimethylamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tma_e" stoichiometry="1"/>
+ <speciesReference species="M_tma_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tmao_e" name="Trimethylamine N oxide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmao_e" stoichiometry="1"/>
+ <speciesReference species="M_tmao_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tre_e" name="Trehalose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_e" stoichiometry="1"/>
+ <speciesReference species="M_tre_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_trp__L_e" name="L Tryptophan exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp__L_e" stoichiometry="1"/>
+ <speciesReference species="M_trp__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tsul_e" name="Thiosulfate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_e" stoichiometry="1"/>
+ <speciesReference species="M_tsul_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ttdca_e" name="tetradecanoate n C140 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_e" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ttdcea_e" name="tetradecenoate n C141 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_e" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tungs_e" name="tungstate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tungs_e" stoichiometry="1"/>
+ <speciesReference species="M_tungs_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tym_e" name="Tyramine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tym_e" stoichiometry="1"/>
+ <speciesReference species="M_tym_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tyr__L_e" name="L Tyrosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr__L_e" stoichiometry="1"/>
+ <speciesReference species="M_tyr__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tyrp_e" name="Phosphotyrosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_e" stoichiometry="1"/>
+ <speciesReference species="M_tyrp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_uacgam_e" name="UDP N acetyl D glucosamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_e" stoichiometry="1"/>
+ <speciesReference species="M_uacgam_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpacgal_e" name="UDP N acetyl D galactosamine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpacgal_e" stoichiometry="1"/>
+ <speciesReference species="M_udpacgal_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpg_e" name="UDPglucose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_e" stoichiometry="1"/>
+ <speciesReference species="M_udpg_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpgal_e" name="UDPgalactose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_e" stoichiometry="1"/>
+ <speciesReference species="M_udpgal_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udpglcur_e" name="UDP D glucuronate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpglcur_e" stoichiometry="1"/>
+ <speciesReference species="M_udpglcur_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ump_e" name="UMP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_e" stoichiometry="1"/>
+ <speciesReference species="M_ump_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_ura_e" name="Uracil exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_e" stoichiometry="1"/>
+ <speciesReference species="M_ura_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_urea_e" name="Urea exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_e" stoichiometry="1"/>
+ <speciesReference species="M_urea_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_uri_e" name="Uridine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_e" stoichiometry="1"/>
+ <speciesReference species="M_uri_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_val__L_e" name="L Valine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_e" stoichiometry="1"/>
+ <speciesReference species="M_val__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xan_e" name="Xanthine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_e" stoichiometry="1"/>
+ <speciesReference species="M_xan_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xmp_e" name="Xanthosine 5 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_e" stoichiometry="1"/>
+ <speciesReference species="M_xmp_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xtsn_e" name="Xanthosine exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_e" stoichiometry="1"/>
+ <speciesReference species="M_xtsn_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xyl__D_e" name="D Xylose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl__D_e" stoichiometry="1"/>
+ <speciesReference species="M_xyl__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_xylu__L_e" name="L Xylulose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu__L_e" stoichiometry="1"/>
+ <speciesReference species="M_xylu__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_zn2_e" name="Zinc exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_e" stoichiometry="1"/>
+ <speciesReference species="M_zn2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-0.005" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Ec_biomass_iAF1260_core_59p81M" name="E coli biomass objective function iAF1260 core with 5981 GAM estimate" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c" stoichiometry="0.02702"/>
+ <speciesReference species="M_amet_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="0.09158"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_sheme_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_val__L_c" stoichiometry="0.4232"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="0.2958"/>
+ <speciesReference species="M_fe2_c" stoichiometry="0.007106"/>
+ <speciesReference species="M_10fthf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.2151"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.1441"/>
+ <speciesReference species="M_nh4_c" stoichiometry="0.011843"/>
+ <speciesReference species="M_his__L_c" stoichiometry="0.09474"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.1335"/>
+ <speciesReference species="M_pe161_c" stoichiometry="0.02632"/>
+ <speciesReference species="M_pe160_p" stoichiometry="0.04148"/>
+ <speciesReference species="M_so4_c" stoichiometry="0.003948"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="0.2211"/>
+ <speciesReference species="M_k_c" stoichiometry="0.1776"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.02617"/>
+ <speciesReference species="M_pheme_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_nad_c" stoichiometry="0.001831"/>
+ <speciesReference species="M_fad_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="0.5137"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_mobd_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_cl_c" stoichiometry="0.004737"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="0.2411"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.02617"/>
+ <speciesReference species="M_pe161_p" stoichiometry="0.04889"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="0.1379"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="0.2411"/>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="0.01389"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="0.2632"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="0.2905"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="0.4505"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_thf_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_kdo2lipid4_e" stoichiometry="0.01945"/>
+ <speciesReference species="M_fe3_c" stoichiometry="0.007106"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="0.3432"/>
+ <speciesReference species="M_zn2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_h2o_c" stoichiometry="54.462"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="5.5e-05"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="0.2537"/>
+ <speciesReference species="M_atp_c" stoichiometry="59.984"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.000447"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="0.1759"/>
+ <speciesReference species="M_2ohph_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_coa_c" stoichiometry="0.000576"/>
+ <speciesReference species="M_cu2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_pe160_c" stoichiometry="0.02233"/>
+ <speciesReference species="M_mn2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_ca2_c" stoichiometry="0.004737"/>
+ <speciesReference species="M_met__L_c" stoichiometry="0.1537"/>
+ <speciesReference species="M_gly_c" stoichiometry="0.6126"/>
+ <speciesReference species="M_mg2_c" stoichiometry="0.007895"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="0.2158"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="0.2632"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.02702"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="0.05684"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="59.806"/>
+ <speciesReference species="M_adp_c" stoichiometry="59.81"/>
+ <speciesReference species="M_ppi_c" stoichiometry="0.7739"/>
+ <speciesReference species="M_h_c" stoichiometry="59.81"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6PA" name="fructose 6 phosphate aldolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4109</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_dha_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6PP" name="D fructose 6 phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6Pt6_2pp" name="Fructose 6 phosphate transport via phosphate antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_F6Ptex" name="fructose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA100ACPHi" name="fatty acyl ACP hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dca_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA120ACPHi" name="fatty acyl ACP hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA140ACPHi" name="fatty acyl ACP hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA141ACPHi" name="fatty acyl ACP hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA160ACPHi" name="fatty acyl ACP hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_palmACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA161ACPHi" name="fatty acyl ACP hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FA80ACPHi" name="fatty acyl ACP hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octa_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE100" name="fatty acid CoA thioesterase decanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_dca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE120" name="fatty acid CoA thioesterase dodecanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE140" name="fatty acid CoA thioesterase tetradecanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE141" name="fatty acid CoA thioesterase tetradecenoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_tdecoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE160" name="fatty acid CoA thioesterase hexadecanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE161" name="fatty acid CoA thioesterase hexadecenoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE180" name="fatty acid CoA thioesterase octadecanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_stcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE181" name="fatty acid CoA thioesterase octadecenoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_odecoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE60" name="fatty acid CoA thioesterase hexanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAE80" name="fatty acid CoA thioesterase octanoate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_occoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_octa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL100t2pp" name="fatty acid CoA ligase decanoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_dca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL120t2pp" name="fatty acid CoA ligase dodecanoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL140t2pp" name="fatty acid CoA ligase tetradecanoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL141t2pp" name="fatty acid CoA ligase tetradecenoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tdecoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL160t2pp" name="fatty acid CoA ligase hexadecanoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL161t2pp" name="fatty acid CoA ligase hexadecenoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL180t2pp" name="fatty acid CoA ligase octadecanoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_stcoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL181t2pp" name="fatty acid CoA ligase octadecenoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_odecoa_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL60t2pp" name="fatty acid CoA ligase hexanoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_hxa_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FACOAL80t2pp" name="fatty acid CoA ligase octanoate transport via vectoral Co A coupling " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octa_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_occoa_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FADRx" name="FAD reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FADRx2" name="FAD reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2947 and STM2948 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALDtex" name="formaldehyde transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALDtpp" name="formaldehyde transport via diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALGTHLs" name="formaldehyde glutathione ligase spontaneous " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_fald_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmgth_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FBA" name="fructose bisphosphate aldolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2141 or STM3068 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FBP" name="fructose bisphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4085 or STM4415 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCI" name="L fucose isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2976</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fcl__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCLK" name="L fuculokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2977</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fcl__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fc1p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCLPA" name="L fuculose 1 phosphate aldolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2974 or STM2916 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fc1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_lald__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FCLT" name="Ferrochelatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0489</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_c" stoichiometry="1"/>
+ <speciesReference species="M_ppp9_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pheme_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDH4pp" name="formate dehydrogenase quinone 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM4035 and STM4036 and STM4037 ) or ( STM1570 and STM1569 and STM1568 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_p" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FDH5pp" name="Formate Dehydrogenase menaquinone 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1570 and STM1569 and STM1568 ) or ( STM4035 and STM4036 and STM4037 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_p" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_p" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2t2pp" name="iron II transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2408</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_fe2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2tex" name="iron II transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2tpp" name="iron 2 transport in via permease no H " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DHBZR" name="release of Fe III from ferric 2 3 dihydroxybenzoylserine" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DHBZSabcpp" name="ferric 2 3 dihydroxybenzoylserine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_fe3dhbzs_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_fe3dhbzs_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3DHBZStonex" name="ferric 2 3 dihydroxybenzoylserine transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2199 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXR1" name="Fe III hydroxamate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXR2" name="Fe III hydroxamate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXR3" name="Fe III hydroxamate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXUtex" name="Fe III hydroxamate unloaded secretion" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox__un_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXUtpp" name="Fe III hydroxamate unloaded secretion extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox__un_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox__un_e" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXexs" name="Fe III hydroxamate Fe loading reaction spontaneaous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox__un_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXtonex" name="Fe III hydroxamine transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3Ri" name="Fe III reduction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3tex" name="iron III transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMR1" name="Ferrichrome reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMR2" name="Ferrichrome reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMR3" name="Ferrichrome reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMUtex" name="ferrichrome minus Fe secretion to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_fecrm__un_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMUtpp" name="ferrichrome minus Fe secretion to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMabcpp" name="ferrichrome transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_fecrm_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_fecrm_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMexs" name="ferrichrome Fe III loading reaction spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FECRMtonex" name="ferrichrome transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERabcpp" name="Fe enterobactin transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_feenter_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_feenter_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERexs" name="enterobactin Fe III binding spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feenter_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERtonex" name="Fe enterobactin transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0585 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feenter_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERtpp" name="enterochelin transport secretion " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0593</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMUtex" name="ferroxamine minus Fe3 secretion to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam__un_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_e" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMUtpp" name="ferroxamine minus Fe3 secretion to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMabcpp" name="ferroxamine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_feoxam_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMexs" name="ferroxamine Fe3 loading reaction spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam__un_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMtonex" name="ferroxamine transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_feoxam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROpp" name="ferroxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0168</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_p" stoichiometry="1"/>
+ <speciesReference species="M_fe2_p" stoichiometry="4"/>
+ <speciesReference species="M_h_p" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ <speciesReference species="M_fe3_p" stoichiometry="4"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FHL" name="Formate hydrogen lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4285 and ( STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852 ) )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FLDR" name="flavodoxin reductase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0694 and STM4084 ) or ( STM3045 and STM4084 ) )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldox_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fldrd_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FLVR" name="flavin reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2947 and STM2948 ) or STM3979 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FLVRx" name="flavin reductase NAD " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMETTRS" name="Methionyl tRNA formyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3407</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mettrna_c" stoichiometry="1"/>
+ <speciesReference species="M_10fthf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_fmettrna_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMNAT" name="FMN adenylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0045</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMNRx" name="FMN reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FMNRx2" name="FMN reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2947 and STM2948 ) or STM3979 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FORt2pp" name="formate transport via proton symport uptake only periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0974</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FORtex" name="formate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FORtppi" name="formate transport via diffusion cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0974</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRD2" name="fumarate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4340 and STM4341 and STM4342 and STM4343 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRD3" name="fumarate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4340 and STM4341 and STM4342 and STM4343 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUK" name="fructose 1 phosphate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2205</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_f1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fdp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRULYStex" name="fructoselysine transporter via diffusion extracellular " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulys_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frulys_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUURtex" name="D fructuronate transport via diffusion extracellular " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fruur_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUpts2pp" name="Fructose transport via PEPPyr PTS f6p generating periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUptspp" name="D fructose transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2204 and STM2206 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_fru_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f1p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FRUtex" name="D fructose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FTHFD" name="formyltetrahydrofolate deformylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1756</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_10fthf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUCtex" name="L fucose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fuc__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUCtpp" name="L fucose transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_fuc__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUM" name="fumarase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1468 or STM4300 or STM1469 or ( STM0761 and STM0762 ) )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUMt2_2pp" name="Fumarate transport via proton symport 2 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUMtex" name="Fumarate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1PACT" name="glucosamine 1 phosphate N acetyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3862</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam1p_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1PPpp" name="Glucose 1 phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1117</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1PTT" name="glucose 1 phosphate thymidylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3923 or STM2095 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ <speciesReference species="M_dttp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdpglu_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1Ptex" name="D glucose 1 phosphate transport via diffusion" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1SAT" name="glutamate 1 semialdehyde aminotransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0202</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu1sa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5aop_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G2PPpp" name="glycerol 2 phosphate phosphatase periplasmic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT120" name="glycerol 3 phosphate acyltransferase C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1ddecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT140" name="glycerol 3 phosphate acyltransferase C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT141" name="glycerol 3 phosphate acyltransferase C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdec7eg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT160" name="glycerol 3 phosphate acyltransferase C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_palmACP_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT161" name="glycerol 3 phosphate acyltransferase C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1hdec9eg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT180" name="glycerol 3 phosphate acyltransferase C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1odecg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PAT181" name="glycerol 3 phosphate acyltransferase C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_octeACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_1odec11eg3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PCabcpp" name="sn glycerol 3 phosphocholine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pc_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PCtex" name="glycero 3 phosphocholine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD2" name="glycerol 3 phosphate dehydrogenase NADP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3700</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD5" name="glycerol 3 phosphate dehydrogenase ubiquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2284 and STM2285 and STM2286 ) or STM3526 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD6" name="glycerol 3 phosphate dehydrogenase menaquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2284 and STM2285 and STM2286 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PD7" name="glycerol 3 phosphate dehydrogenase demethylmenaquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2284 and STM2285 and STM2286 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PEabcpp" name="sn glycerol 3 phosphoethanolamine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PEtex" name="glycero 3 phosphoethanolamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PGabcpp" name="sn glycerol 3 phosphoglycerol transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PGtex" name="glycerophoglycerol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PIabcpp" name="sn glycerol 3 phosphoethanolamine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PItex" name="glycero 3 phospho 1 inositol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PSabcpp" name="sn glycerol 3 phosphoserine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_g3ps_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3ps_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PStex" name="glycerophosphserine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3ps_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G3PT" name="glycerol 3 phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G5SADs" name="L glutamate 5 semialdehyde dehydratase spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu5sa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G5SD" name="glutamate 5 semialdehyde dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0322</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_glu5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_glu5sa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6PDA" name="glucosamine 6 phosphate deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0684</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6PDH2r" name="glucose 6 phosphate dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1886</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_6pgl_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6PP" name="glucose 6 phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6Pt6_2pp" name="Glucose 6 phosphate transport via phosphate antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ <speciesReference species="M_g6p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G6Ptex" name="glucose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAL1PPpp" name="D galactose 1 phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1117</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_gal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAL1Ptex" name="D galactose 1 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal1p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALBDtex" name="beta D galactose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal__bD_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal__bD_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTNLtex" name="L galactonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0999 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTNt2pp" name="D galactonate transport via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3827</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTNtex" name="D galactonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTt2rpp" name="D galactarte transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2962</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galct__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTtex" name="D galactarte transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galct__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALKr" name="galactokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0774 or STM2101 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal1p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALM2pp" name="aldose 1 epimerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0773</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal__bD_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALS3" name="a galactosidase melibiose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4298</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_gal_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALT1" name="galactosyltransferase I LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3719</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ <speciesReference species="M_gicolipa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gagicolipa_c" stoichiometry="1"/>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALTtex" name="Galactitol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALURt2rpp" name="D galacturonate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3134</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galur_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALURtex" name="D galacturonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galur_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALUi" name="UTP glucose 1 phosphate uridylyltransferase irreversible " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1752 and STM2098 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_utp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALabcpp" name="D galactose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2189 and STM2190 and STM2188 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_gal_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALt2pp" name="D galactose transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3091</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALtex" name="D galactose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAM6Pt6_2pp" name="D Glucosamine 6 phosphate transport via phosphate antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAMAN6Ptex" name="D glucosamine 6 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAMptspp" name="D glucosamine transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAMtex" name="D glucosamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GAPD" name="glyceraldehyde 3 phosphate dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1290</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_13dpg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GARFT" name="phosphoribosylglycinamide formyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2500</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gar_c" stoichiometry="1"/>
+ <speciesReference species="M_10fthf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_fgam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GART" name="GAR transformylase T" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1883</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_gar_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fgam_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GBBTNtex" name="gamma butyrobetaine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gbbtn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDMANE" name="GDP 4 dehydro 6 deoxy D mannose epimerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2108</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpddman_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpofuc_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPDPK" name="GDP diphosphokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2956 or STM3742 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ppgpp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPMNH" name="GDP mannose mannosyl hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2107</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_man_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPMNP" name="GDP mannose phyrophosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2477</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ <speciesReference species="M_man1p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GDPtex" name="GDP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM2267 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GF6PTA" name="glutamine fructose 6 phosphate transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3861</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GHMT2r" name="glycine hydroxymethyltransferase reversible" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2555</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="1"/>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GK1" name="guanylate kinase GMPATP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3740</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLBRAN2" name="1 4 alpha glucan branching enzyme glycogen bglycogen " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3538</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glycogen_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_bglycogen_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCATr" name="D glucose O acetyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0472</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acglc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCDpp" name="Glucose dehydrogenase ubiquinone 8 as acceptor periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0169 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_p" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_glcn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCNt2rpp" name="D gluconate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3512 or STM4482 or STM3541 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_glcn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCNtex" name="D gluconate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCP" name="glycogen phosphorylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3534 or STM3514 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_glycogen_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCP2" name="glycogen phosphorylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3514 or STM3534 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_bglycogen_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRAL" name="5 dehydro 4 deoxyglucarate aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3249</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dh4dglc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRD" name="glucarate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2960 or STM2961 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dh4dglc_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRt2rpp" name="D glucarate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2962</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_glcr_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcr_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCRtex" name="D glucarate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcr_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCS1" name="glycogen synthase ADPGlc " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3535</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adpglc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glycogen_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCTR1" name="glucosyltransferase I LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3722</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icolipa_c" stoichiometry="1"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gicolipa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCTR2" name="glucosyltransferase II LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3718</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ <speciesReference species="M_gagicolipa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_ggagicolipa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCTR3" name="glucosyltransferase III LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3717</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ <speciesReference species="M_ggagicolipa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gggagicolipa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCUR1Ptex" name="D glucuronate 1 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur1p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCURt2rpp" name="D glucuronate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3134 or STM0161 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_glcur_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCURtex" name="D glucuronat transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCabcpp" name="D glucose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2189 and STM2190 and STM2188 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCptspp" name="D glucose transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2433 and STM1203 and STM2431 and STM2432 ) or ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 ) or ( STM2433 and STM2431 and STM2432 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCt2pp" name="D glucose transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3091</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCtex" name="glucose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLCtexi" name="D glucoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLDBRAN2" name="glycogen debranching enzyme bglycogen glycogen " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3537</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bglycogen_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glycogen_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLGC" name="glucose 1 phosphate adenylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3536</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_adpglc_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNS" name="glutamine synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4007</p>
+ <p>SUBSYSTEM: Glutamate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNTRS" name="Glutaminyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0686</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnagln_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_glntrna_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNabcpp" name="L glutamine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0830 and STM0829 and STM0828 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLNtex" name="L glutamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gln__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLU5K" name="glutamate 5 kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0321</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu5p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUCYS" name="gamma glutamylcysteine synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2818</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_glucys_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUDy" name="glutamate dehydrogenase NADP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1299</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUN" name="glutaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1525</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUNpp" name="glutaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3106</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_p" stoichiometry="1"/>
+ <speciesReference species="M_nh4_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUPRT" name="glutamine phosphoribosyldiphosphate amidotransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2362</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pram_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUR" name="glutamate racemase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4131</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUSy" name="glutamate synthase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3330 and STM3331 )</p>
+ <p>SUBSYSTEM: Glutamate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="2"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUTRR" name="glutamyl tRNA reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1777</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_glutrna_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaglu_c" stoichiometry="1"/>
+ <speciesReference species="M_glu1sa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUTRS" name="Glutamyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2415</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaglu_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_glutrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUabcpp" name="L glutamate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0665 and STM0664 and STM0663 and STM0662 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUt2rpp" name="L glutamate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4283</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUt4pp" name="Naglutamate symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3746</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_p" stoichiometry="1"/>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLUtex" name="L glutamate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLXCL" name="glyoxalate carboligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0517</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glx_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYALDtex" name="Glyceraldehyde transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyald_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYALDtpp" name="Glyceraldehyde facilitated diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4087</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyald_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYAT" name="glycine C acetyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3709</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_2aobut_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYBabcpp" name="Glycine betaine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2162 and STM2163 and STM2164 and STM2165 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYBtex" name="Glycine betaine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC2Ptex" name="Glycerol 2 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc2p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC3Pabcpp" name="sn Glycerol 3 phosphate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC3Pt6pp" name="Glycerol 3 phosphate phosphate antiporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2283</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYC3Ptex" name="Glycerol 3 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCAt2rpp" name="D glycerate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2962</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCAtex" name="D glycerate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc__R_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCDx" name="Glycerol dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4108 or STM3529 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCK" name="glycerate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2959 or STM2492 or STM3247 or STM0525 )</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCK2" name="glycerate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3247</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2pg_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCL" name="Glycine Cleavage System" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3054 and STM3053 and STM3055 and STM0154 )</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mlthf_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTDx" name="Glycolate dehydrogenase NAD " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTDy" name="Glycolate dehydrogenase NADP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTt2rpp" name="glycolate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3692</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTt4pp" name="glycolate transport via sodium symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4273</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_p" stoichiometry="1"/>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCLTtex" name="glycolate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCTO2" name="Glycolate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1620</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCTO3" name="Glycolate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1620</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCTO4" name="Glycolate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1620</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCtex" name="glycerol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYCtpp" name="glycerol transport via channel periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( s0001 or STM4087 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYK" name="glycerol kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4086</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYOX" name="hydroxyacylglutathione hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0261</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lgt__S_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYOX3" name="glyoxalase III" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYTRS" name="Glycyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3655 and STM3656 )</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ <speciesReference species="M_trnagly_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glytrna_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYt2pp" name="glycine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYtex" name="Glycine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMAND" name="GDP D mannose dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2109</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpddman_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMHEPAT" name="D glycero D manno hepose 1 phosphate adenyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3200</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gmhep1p_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_adphep__DD_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMHEPK" name="D glycero D manno heptose 7 phosphate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3200</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmhep7p_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmhep17bp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMHEPPA" name="D glycero D manno heptose 1 7 bisphosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0248</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmhep17bp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_gmhep1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMPR" name="GMP reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0141</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMPS2" name="GMP synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2510</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GMPtex" name="GMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GND" name="phosphogluconate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2081</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_6pgc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GNK" name="gluconokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4485 or STM3542 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_glcn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgc_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GOFUCR" name="GDP 4 oxo L fucose reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2108</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gdpofuc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpfuc_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA1" name="Glycerophosphodiester phosphodiesterase Glycerophosphocholine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA1pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphocholine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pc_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA2" name="Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_etha_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA2pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_etha_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA3" name="Glycerophosphodiester phosphodiesterase Glycerophosphoserine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA3pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoserine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA4" name="Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA4pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA5" name="Glycerophosphodiester phosphodiesterase Glycerophosphoinositol " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_inost_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GPDDA5pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoinositol " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_inost_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GRTT" name="geranyltranstransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0423</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ipdp_c" stoichiometry="1"/>
+ <speciesReference species="M_grdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frdp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GRXR" name="glutaredoxin reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3702 or STM0872 or STM1433 or STM1165 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxox_c" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxrd_c" stoichiometry="1"/>
+ <speciesReference species="M_gthox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSNK" name="guanosine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0491</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSNt2pp" name="guanosine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_gsn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSNtex" name="guanosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSPMDA" name="Glutathionylspermidine amidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3139</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtspmd_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSPMDS" name="Glutathionylspermidine synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3139</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gtspmd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHOXtex" name="glutathione ox transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHOr" name="glutathione oxidoreductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3597</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDHpp" name="glutathione hydralase periplasmic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3551</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_p" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDabc2pp" name="glutathione export via ABC system cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0956 and STM0957 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDabcpp" name="Reduced glutathione via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0848 and STM0849 and STM0850 and STM0851 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHRDtex" name="glutathione transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTHS" name="glutathione synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3095</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_glucys_c" stoichiometry="1"/>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPCI" name="GTP cyclohydrolase I" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2193</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ahdt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPCII2" name="GTP cyclohydrolase II 25drapp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1711</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_25drapp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPDPDP" name="guanosine 5 triphosphate 3 diphosphate diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3913</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdptp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_ppgpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPDPK" name="GTP diphosphokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2956</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gdptp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPHs" name="GTP amine hydrolysis spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtp_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GTPtex" name="GTP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gtp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAPRT" name="guanine phosphoribosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0317 or STM0170 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_c" stoichiometry="1"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAt2pp" name="guanine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3747</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_gua_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAtex" name="Guanine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUAtpp" name="Guanine transport via diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUR1PPpp" name="Glucuronate 1 phosphate phosphatase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_glcur1p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_glcur_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2O2tex" name="hydrogen peroxide transport via diffusion external " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2Otex" name="H2O transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 or s0001 or STM4016 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2Otpp" name="H2O transport via diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2SO" name="Hydrogen sulfide oxidation" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so4_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2St1pp" name="h2s transport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2Stex" name="h2s transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2tex" name="hydrogen transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_H2tpp" name="hydrogen transport diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD1i" name="3 hydroxyacyl CoA dehydrogenase acetoacetyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hbcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_aacoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD2i" name="3 hydroxyacyl CoA dehydrogenase 3 oxohexanoyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_3ohcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD3i" name="3 hydroxyacyl CoA dehydrogenase 3 oxooctanoyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2388 or STM3983 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hocoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_3oocoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD4i" name="3 hydroxyacyl CoA dehydrogenase 3 oxodecanoyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3odcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD5i" name="3 hydroxyacyl CoA dehydrogenase 3 oxododecanoyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_3oddcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD6i" name="3 hydroxyacyl CoA dehydrogenase 3 oxotetradecanoyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3htdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3otdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD7i" name="3 hydroxyacyl CoA dehydrogenase 3 oxohexadecanoyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_3hhdcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ohdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HACD8i" name="3 hydroxyacyl CoA dehydrogenase 3 oxooctadecanoyl CoA " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_3hodcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3oodcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HBZOPT" name="Hydroxybenzoate octaprenyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4234</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octdp_c" stoichiometry="1"/>
+ <speciesReference species="M_4hbz_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ophb_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HCINNMtex" name="3 hydroxycinnamic acid transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcinnm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HCO3E" name="HCO3 equilibration reaction" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0171</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hco3_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HDCAtexi" name="Hexadecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HDCEAtexi" name="Hexadecenoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcea_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HDCOAI" name="hexadecenoyl coa cis trans isomerization" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3983</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdd2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEMEOS" name="Heme O synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0439</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_pheme_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_hemeO_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPK1" name="LPS heptose kinase I LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3721</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hhlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phhlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPK2" name="LPS heptose kinase II LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3716</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hphhlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_phphhlipa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT1" name="heptosyltransferase I LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3712</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_c" stoichiometry="1"/>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_hlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT2" name="heptosyltransferase II LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3711</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hhlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT3" name="heptosyltransferase III LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3723</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phhlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_hphhlipa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEPT4" name="heptosyltransferase IV LPS core synthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3714</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gggagicolipa_c" stoichiometry="1"/>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HETZK" name="hydroxyethylthiazole kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2147</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4mhetz_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4mpetz_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEX1" name="hexokinase D glucoseATP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2403</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEX4" name="hexokinase D mannoseATP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEX7" name="hexokinase D fructoseATP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0393</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HG2abcpp" name="Mercury Hg2 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_hg2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hg2_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HG2tex" name="mercury Hg2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hg2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hg2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISTD" name="histidinol dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2072</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ <speciesReference species="M_histd_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ <speciesReference species="M_his__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISTP" name="histidinol phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2074</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_hisp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_histd_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISTRS" name="Histidyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2522</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnahis_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_histrna_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISabcpp" name="L histidine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2354 and STM2352 and STM2351 and STM2353 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_his__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISt2rpp" name="L histidine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0150</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_his__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HIStex" name="L histidine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_his__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HMBS" name="hydroxymethylbilane synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3938</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppbng_c" stoichiometry="4"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="4"/>
+ <speciesReference species="M_hmbil_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HMPK1" name="hydroxymethylpyrimidine kinase ATP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2146 or STM2435 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4ahmmp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_4ampm_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HOMt2pp" name="L homoserineserine efflux via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0832 or STM3960 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hom__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HOMtex" name="L homoserine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hom__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPPK2" name="6 hydroxymethyl dihydropterin pyrophosphokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0183</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6hmhpt_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_6hmhptpp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPPPNtex" name="3 3 hydroxyphenyl propionate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpppn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPYRI" name="hydroxypyruvate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0518</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hpyr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPYRRx" name="Hydroxypyruvate reductase NADH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1135 or STM3646 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hpyr_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HPYRRy" name="Hydroxypyruvate reductase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_hpyr_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSDy" name="homoserine dehydrogenase NADPH " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4101 or STM0002 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_aspsa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSK" name="homoserine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0003</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_phom_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSST" name="homoserine O succinyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4182</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succoa_c" stoichiometry="1"/>
+ <speciesReference species="M_hom__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_suchms_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HSTPT" name="histidinol phosphate transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2073</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imacp_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_hisp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HXAtex" name="Hexanoate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HXPRT" name="hypoxanthine phosphoribosyltransferase Hypoxanthine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0317 or STM0170 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ <speciesReference species="M_hxan_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYPOE" name="hypothetical enyme" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_pydam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYXNtex" name="Hypoxanthine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYXNtpp" name="Hypoxanthine transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Htex" name="proton transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICDHyr" name="isocitrate dehydrogenase NADP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1238</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_icit_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICHORS" name="isochorismate synthase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2310</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ichor_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICHORSi" name="Isochorismate Synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0595 or STM2310 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ichor_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICHORT" name="isochorismatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0597</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ichor_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_23ddhb_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICL" name="Isocitrate lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4184</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDOND" name="L idonate 5 dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4484</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_idon__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDOND2" name="L indonate 5 dehydrogenase NADP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4484</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_idon__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDONt2rpp" name="L idonate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4482</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_idon__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IDONtex" name="L idonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_idon__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IG3PS" name="Imidazole glycerol 3 phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2075 and STM2077 )</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prlp_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aicar_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_eig3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IGPDH" name="imidazoleglycerol phosphate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2074</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eig3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_imacp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IGPS" name="indole 3 glycerol phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1725</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2cpr5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ig3p_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILETA" name="isoleucine transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3903</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mop_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILETRS" name="Isoleucyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0046</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnaile_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_iletrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILEabcpp" name="L isoleucine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ile__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ile__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILEt2rpp" name="L isoleucine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ile__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ILEtex" name="L isoleucine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ile__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IMPC" name="IMP cyclohydrolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4176</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fprica_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IMPD" name="IMP dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2511</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IMPtex" name="IMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INDOLEt2pp" name="Indole transport via proton symport irreversible periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3390 and STM3391 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_indole_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INDOLEt2rpp" name="Indole transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3279</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INDOLEtex" name="Indole transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSH" name="Inosine hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0051</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ <speciesReference species="M_hxan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSK" name="insosine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0491</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSTtex" name="inositol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSt2pp" name="inosine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INSt2rpp" name="inosine transport in via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INStex" name="inosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPDDI" name="isopentenyl diphosphate D isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3039</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ipdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmpp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPDPS" name="1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase ipdp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0049</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2mb4p_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPMD" name="3 isopropylmalate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0112</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c2hmp_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_3c4mop_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPPMIa" name="3 isopropylmalate dehydratase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0110 and STM0111 ) or ( STM0329 and STM0330 ) )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c2hmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ippm_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPPMIb" name="2 isopropylmalate hydratase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0110 and STM0111 ) or ( STM0329 and STM0330 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2ippm_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3c3hmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_IPPS" name="2 isopropylmalate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0113</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_3mob_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3c3hmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ISETACtex" name="isethionate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_isetac_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_isetac_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_K2L4Aabcpp" name="KDO 2 lipid IV A transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_kdo2lipid4_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_K2L4Atex" name="KDO 2 lipid IV A transport via vector periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo2lipid4_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KARA1" name="ketol acid reductoisomerase 2 3 dihydroxy 3 methylbutanoate " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3909</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhmb_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alac__S_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KARA2" name="ketol acid reductoisomerase 2 Acetolactate " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3909</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ahbut_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAS14" name="beta ketoacyl ACP synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_acACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_actACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAS15" name="beta ketoacyl ACP synthase 2 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1193</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_actACP_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT1" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aacoa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT2" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ohcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_btcoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT3" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oocoa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT4" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_3odcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_occoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT5" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oddcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT6" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3otdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT7" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ohdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KAT8" name="3 ketoacyl CoA thiolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oodcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KDOCT2" name="3 deoxy manno octulosonate cytidylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0988</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_ckdo_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KDOPP" name="3 deoxy manno octulosonate 8 phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3316</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo8p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_kdo_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KDOPS" name="3 deoxy D manno octulosonic acid 8 phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1772</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ara5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo8p_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_KG6PDC" name="3 keto L gulonate 6 phosphate decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4386 or STM3675 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhgulnp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__L_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Kabcpp" name="Potassium ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0706 and STM0705 and STM0704 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_k_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_k_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Kt2pp" name="potassium transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3880 or ( STM1695 and STM3409 and STM3986 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Kt3pp" name="potassium transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3457 or STM0086 or STM1771 or STM0866 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Ktex" name="potassium transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LA4NTpp" name="4 amino 4 deoxy L arabinotransferase LPS lipid A modification periplasmic face of membrane " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2301</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uLa4n_p" stoichiometry="1"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acolipa_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LADGMDH" name="L alanyl gamma D glutamyl meso diaminopimelate hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1680</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDglu_c" stoichiometry="1"/>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALDO2x" name="D LactaldehydeNAD 1 oxidoreductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4108</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_lald__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LALGP" name="L alanyl gamma L glutamate peptidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0316</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaLglu_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCARR" name="lacaldehyde reductase R propane 1 2 diol forming " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lald__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCARS" name="lacaldehyde reductase S propane 1 2 diol forming " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2973</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lald__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LCTStex" name="Lactose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lcts_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lcts_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LDH_D" name="D lactate dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2167 or STM1647 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LDH_D2" name="D lactate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2167</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUTAi" name="leucine transaminase irreversible " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3903 or STM4248 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4mop_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUTRS" name="Leucyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0648</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnaleu_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_leutrna_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUabcpp" name="L leucine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 ) or ( STM3560 and STM3561 and STM3563 and STM3564 and STM3562 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUt2rpp" name="L leucine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUtex" name="L leucine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LGTHL" name="lactoylglutathione lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1435 or STM0235 )</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lgt__S_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPACabcpp" name="lipid cold A transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa__cold_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_lipa__cold_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAabcpp" name="lipid A transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lipa_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAtex" name="lipid A transport via vector periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPADSS" name="Lipid A disaccaride synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0229</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipidX_c" stoichiometry="1"/>
+ <speciesReference species="M_u23ga_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_lipidAds_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A120pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1ddecg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A140pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1tdecg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A141pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1tdec7eg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A160pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1hdecg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A161pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1hdec9eg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A180pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1odecg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1A181pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1odec11eg3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E120pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpe120_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E140pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpe140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E141pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E160pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe160_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E161pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe161_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E180pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1E181pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe181_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G120pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G140pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G141pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg141_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G160pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg160_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G161pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G180pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL1G181pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg181_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A120" name="Lysophospholipase L2 2 acylglycerophosphotidate n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A140" name="Lysophospholipase L2 2 acylglycerophosphotidate n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A141" name="Lysophospholipase L2 2 acylglycerophosphotidate n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdec7eg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A160" name="Lysophospholipase L2 2 acylglycerophosphotidate n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A161" name="Lysophospholipase L2 2 acylglycerophosphotidate n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdec9eg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A180" name="Lysophospholipase L2 2 acylglycerophosphotidate n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odecg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2A181" name="Lysophospholipase L2 2 acylglycerophosphotidate n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odec11eg3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE120" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1"/>
+ <speciesReference species="M_pg120_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_apg120_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE140" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg140_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg140_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE141" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_apg141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE160" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_apg160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE161" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg161_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE180" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1"/>
+ <speciesReference species="M_pg180_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_apg180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE181" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_apg181_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG120" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1"/>
+ <speciesReference species="M_pg120_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_apg120_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG140" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1"/>
+ <speciesReference species="M_pg140_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg140_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG141" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_apg141_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG160" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1"/>
+ <speciesReference species="M_pg160_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg160_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG161" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_apg161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG180" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_apg180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG181" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1"/>
+ <speciesReference species="M_pg181_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg181_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E120" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E140" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E141" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E160" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E161" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E180" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2E181" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G120" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G140" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G141" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G160" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G161" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G180" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LPLIPAL2G181" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LSERDHr" name="L serine dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1511</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2amsa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSDC" name="lysine decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0234 or STM2559 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_15dap_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSTRS" name="Lysyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3040</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnalys_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_lystrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSabcpp" name="L lysine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2355 and STM2352 and STM2351 and STM2353 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSt2pp" name="L lysine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2200</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYSt3pp" name="L lysine transport out via proton antiport cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3066</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYStex" name="L lysine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYXI" name="Lyxose isomerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4046</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYXt2pp" name="L Lyxose transport via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4050</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lyx__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LYXtex" name="L Lyxose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lyx__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_LACD2" name="L Lactate dehydrogenase ubiquinone " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3694</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__L_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_LACD3" name="L Lactate dehydrogenase menaquinone " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3694</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_LACt2rpp" name="L lactate reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3692</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_L_LACtex" name="L lactate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_M1PD" name="mannitol 1 phosphate 5 dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3686</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl1p_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MACPD" name="Malonyl ACP decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acACP_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALDt2_2pp" name="D Malate transport via proton symport 2 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_mal__D_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALDtex" name="D Malate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALS" name="malate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4183</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTATr" name="maltose O acetyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0472</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmalt_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTHXabcpp" name="maltohexaose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_malthx_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTHXtexi" name="maltohexaose transport via diffusion extracellular to periplasm irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTPTabcpp" name="maltopentaose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTPTtexi" name="maltopentaoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltpt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTRabcpp" name="Maltotriose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_malttr_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_malttr_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTRtexi" name="Maltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malttr_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTTRabcpp" name="maltotetraose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_maltttr_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_maltttr_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTTTRtexi" name="maltotetraoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltttr_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTabcpp" name="maltose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTptspp" name="maltose transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2433 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_malt_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALTtexi" name="maltoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALt2_2pp" name="Malate transport via proton symport 2 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALtex" name="Malate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN6PI" name="mannose 6 phosphate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1467</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN6Pt6_2pp" name="Mannose 6 phosphate transport via phosphate antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="2"/>
+ <speciesReference species="M_man6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN6Ptex" name="Mannose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANGLYCtex" name="2 O alpha mannosyl D glycerate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_manglyc_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_manglyc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANptspp" name="D mannose transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_man_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANtex" name="D mannose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCITD" name="2 methylcitrate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0370</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mcit_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2mcacn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCITL2" name="methylisocitrate lyase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0368</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_micit_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCITS" name="2 methylcitrate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0369</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2mcit_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCOATA" name="Malonyl CoA ACP transacylase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1196 and STM1194 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malACP_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCPST" name="3 mercaptopyruvate sulfurtransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2533</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_c" stoichiometry="1"/>
+ <speciesReference species="M_mercppyr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcynt_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCTP1App" name="murein crosslinking transpeptidase 1A A2pm D ala periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0122 or STM0640 or STM0190 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCTP1Bpp" name="murein crosslinking transpeptidase 1B A2pm A2pm periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0190 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5px3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MCTP2App" name="murein crosslinking transpeptidase 1A A2pm D ala periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0122 or STM0640 or STM3493 or STM0190 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="2"/>
+ <speciesReference species="M_murein5px4px4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP1pp" name="murein D D carboxypeptidase murein5px4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP2pp" name="murein D D carboxypeptidase murein5px4px4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px4px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_murein4px4px4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP3pp" name="murein D D carboxypeptidase murein5p5p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5p4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP4pp" name="murein D D carboxypeptidase murein5p4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5p4p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDCP5pp" name="murein D D carboxypeptidase murein5p3p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP1pp" name="murein D D endopeptidase murein4px4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP2pp" name="murein D D endopeptidase murein3px4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein3px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP3pp" name="murein D D endopeptidase murein5px4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDDEP4pp" name="murein D D endopeptidase murein4px4px4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_murein4px4px4p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4p4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDH" name="malate dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3359</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MDRPD" name="5 Methylthio 5 deoxy D ribulose 1 phosphate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mdru1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dkmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ME1" name="malic enzyme NAD " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1566</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_mal__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ME2" name="malic enzyme NADP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2472</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_mal__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MECDPDH2" name="2C methyl D erythritol 2 4 cyclodiphosphate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2523</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mecdp_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2mb4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MECDPS" name="2 C methyl D erythritol 2 4 cyclodiphosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2929</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2p4c2me_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_2mecdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MELIBt2pp" name="melibiose transport in via symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4299</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_melib_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MELIBt3ipp" name="melibiose transport in via antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1522</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_melib_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_melib_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MELIBtex" name="melibiose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_melib_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MEPCT" name="2 C methyl D erythritol 4 phosphate cytidylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2930</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2me4p_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_4c2me_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METAT" name="methionine adenosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3090</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METDabcpp" name="D methionine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0246 and STM0247 and STM0245 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_met__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__D_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METDtex" name="D methionine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METOX1s" name="methionine oxidation spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_metsox__S__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METOX2s" name="methionine oxidation 2 spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__R__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METS" name="methionine synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4188.S or STM3965 )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hcys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_5mthf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX1abcpp" name="L methionine S oxide transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_metsox__S__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__S__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX1tex" name="L methionine S oxide diffusion extracellular " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__S__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__S__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX2abcpp" name="L methionine R oxide transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_metsox__R__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__R__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOX2tex" name="L methionine R oxide diffusion extracellular " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__R__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__R__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOXR1" name="L methionine S oxide reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM4408 and STM2649 ) or ( STM4408 and STM3915 ) )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ <speciesReference species="M_metsox__S__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METSOXR2" name="L methionine R sulfoxide reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1291 and STM2649 ) or ( STM1291 and STM3915 ) )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__R__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METTRS" name="Methionyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2155</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnamet_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_mettrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METabcpp" name="L methionine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0246 and STM0247 and STM0245 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_met__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_METtex" name="L methionine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2t3_2pp" name="magnesium Mg2 transport inout via proton antiport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2tex" name="magnesium Mg2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2tpp" name="magnesium 2 transport in via diffusion" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3952</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MGSA" name="methylglyoxal synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1076</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MI1PP" name="myo inositol 1 phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2546</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mi1p__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MICITD" name="2 methylisocitrate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0158</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2mcacn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_micit_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MINOHPtexi" name="myo inositol phosphate transport via diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_minohp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_minohp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP1App" name="murein L D carboxypeptidase murein5px4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein3px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_alaala_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP1Bpp" name="murein L D carboxypeptidase murein4p4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP2App" name="murein L D carboxypeptidase murein5p5p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p3p_p" stoichiometry="1"/>
+ <speciesReference species="M_alaala_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP2Bpp" name="murein L D carboxypeptidase murein4p3p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein3p3p_p" stoichiometry="1"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDCP3App" name="murein L D carboxypeptidase murein5px3p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5px3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p" stoichiometry="1"/>
+ <speciesReference species="M_murein3px3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDEP1pp" name="murein L D endopeptidase murein3px3p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein3px3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein3p3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLDEP2pp" name="murein L D endopeptidase murein5px3p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5px3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG1" name="Maltodextrin glucosidase maltotriose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_malttr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG2" name="Maltodextrin glucosidase maltotetraose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_malttr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG3" name="Maltodextrin glucosidase maltopentaose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_maltttr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG4" name="Maltodextrin glucosidase maltohexaose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTG5" name="Maltodextrin glucosidase maltoheptaose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY1pp" name="murein lytic transglycosylase murein4p4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY2pp" name="murein lytic transglycosylase murein4p3p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1"/>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY3pp" name="murein lytic transglycosylase murein3p3p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein3p3p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTGY4pp" name="murein lytic transglycosylase murein4px4p4p periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4px4p4p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4p_p" stoichiometry="1"/>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTP1" name="Maltodextrin phosphorylase maltopentaose " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3514</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltttr_c" stoichiometry="1"/>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTP2" name="Maltodextrin phosphorylase maltohexaose " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3514</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MLTP3" name="Maltodextrin phosphorylase maltoheptaose " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3514</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_c" stoichiometry="1"/>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MME" name="methylmalonyl CoA epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmcoa__R_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mmcoa__S_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MMETtex" name="S methyl L methionine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmet_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mmet_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MN2t3pp" name="manganese Mn2 transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MN2tpp" name="manganese transport in via permease no H " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MN6PP" name="mannose 6 phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNLptspp" name="mannitol transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3685 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_mnl_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mnl1p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNLtex" name="mannitol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mnl_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNt2pp" name="manganese Mn2 transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2408</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNtex" name="Manganese Mn2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOAT" name="3 deoxy D manno octulosonic acid transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3724</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ckdo_c" stoichiometry="1"/>
+ <speciesReference species="M_lipidA_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_kdolipid4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOAT2" name="3 deoxy D manno octulosonic acid transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3724</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ckdo_c" stoichiometry="1"/>
+ <speciesReference species="M_kdolipid4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOAT3C" name="3 deoxy D manno octulosonic acid transferase III LPS core biosynthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3715</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phphhlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_ckdo_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_kphphhlipa_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOBDabcpp" name="molybdate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2441 and STM2444 and STM2443 and STM2442 ) or ( STM0781 and STM0782 and STM0783 ) or ( STM2441 and STM2443 and STM2442 and STM4063 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_mobd_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_mobd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOBDtex" name="molybdate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mobd_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mobd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MOHMT" name="3 methyl 2 oxobutanoate hydroxymethyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0182</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_3mob_c" stoichiometry="1"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_2dhp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MPTG" name="murein polymerizing transglycosylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2531 or STM0190 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uaagmda_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_c" stoichiometry="2"/>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MPTG2" name="murein polymerizing transglycosylase 2 three linked units " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0190 or STM2531 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ <speciesReference species="M_uaagmda_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p5p5p_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MSO3tex" name="methanesulfonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mso3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mso3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTAN" name="methylthioadenosine nucleosidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0207</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mta_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mtr_c" stoichiometry="1"/>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTHFC" name="methenyltetrahydrofolate cyclohydrolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0542</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_methf_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_10fthf_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTHFD" name="methylenetetrahydrofolate dehydrogenase NADP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0542</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_methf_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTHFR2" name="5 10 methylenetetrahydrofolate reductase NADH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4105</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mthf_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTRI" name="5 methylthioribose 1 phosphate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mdr1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mdru1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTRK" name="5 methylthioribose kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mtr_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mdr1p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MTRPOX" name="N methyltryptophan oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1160</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_Nmtrp_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_fald_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_N2Otex" name="nitrious oxide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_N2Otpp" name="nitrious oxide transport diffusion " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NACODA" name="N acetylornithine deacetylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4120</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_acg5sa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_glu5sa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NACtex" name="Nicotinic acid transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NACtpp" name="Nicotinic acid uptake periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADDP" name="NAD diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2427 or STM4166 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH10" name="NADH dehydrogenase menaquinone 8 0 protons " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1211</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH16pp" name="NADH dehydrogenase ubiquinone 8 3 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH17pp" name="NADH dehydrogenase menaquinone 8 3 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH18pp" name="NADH dehydrogenase demethylmenaquinone 8 3 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH5" name="NADH dehydrogenase ubiquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1211</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADH9" name="NADH dehydrogenase demethylmenaquinone 8 0 protons " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1211</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADK" name="NAD kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2683</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADN" name="NAD nucleosidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ncam_c" stoichiometry="1"/>
+ <speciesReference species="M_adprib_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPHQR2" name="NADPH Quinone Reductase Ubiquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3179</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPHQR3" name="NADPH Quinone Reductase Menaquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3179</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPHQR4" name="NADPH Quinone Reductase 2 Demethylmenaquinone 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3179</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADPPPS" name="NADP phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADS1" name="NAD synthase nh3 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1310</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_dnad_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NADTRHD" name="NAD transhydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4126 or ( STM1480 and STM1479 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAMNPP" name="nicotinic acid mononucleotide pyrophosphorylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1004</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ <speciesReference species="M_nac_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAt3_1p5pp" name="sodium proton antiporter HNA is 15 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1806</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ <speciesReference species="M_na1_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAt3_2pp" name="sodium proton antiporter HNA is 2 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0039</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAtex" name="sodium transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK1" name="nucleoside diphosphate kinase ATPGDP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK2" name="nucleoside diphosphate kinase ATPUDP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_utp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK3" name="nucleoside diphosphate kinase ATPCDP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK4" name="nucleoside diphosphate kinase ATPdTDP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dttp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK5" name="nucleoside diphosphate kinase ATPdGDP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgdp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgtp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK6" name="nucleoside diphosphate kinase ATPdUDP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dudp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dutp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK7" name="nucleoside diphosphate kinase ATPdCDP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcdp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_dctp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NDPK8" name="nucleoside diphosphate kinase ATPdADP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_dadp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_datp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NH4tex" name="ammonia transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NH4tpp" name="ammonia reversible transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( s0001 or STM0463 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NHFRBO" name="NADHflavorubredoxin oxidoreductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2840 and STM2841 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_no_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2abcpp" name="Nickle Ni2 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ni2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_ni2_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2t3pp" name="nickle Ni2 transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2tex" name="nickel transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNAT" name="nicotinamide nucleotide adenylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0645 or STM4580.S )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNDA" name="nicotinamide nucleotide amidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNN" name="NMN nucleosidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ncam_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNPtpp" name="NMN permease periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0757</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNt7pp" name="NMN transport via NMN glycohydrolase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ncam_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNtex" name="NMN transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNAM" name="nicotinamidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1293</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ncam_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNATr" name="nicotinate nucleotide adenylyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0645</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_dnad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNDPR" name="nicotinate nucleotide diphosphorylase carboxylating " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0145</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_quln_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO2t2rpp" name="nitrite transport in via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1765 or STM3476 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_no2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO2tex" name="nitrite transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R1bpp" name="Nitrate reductase Ubiquinol 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2256 and STM2259 and STM2255 and STM2258 and STM2257 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_no3_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_no2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R1pp" name="Nitrate reductase Ubiquinol 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1580 and STM1579 and STM1578 and STM1577 ) or ( STM1764 and STM1763 and STM1762 and STM1761 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_no3_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R2bpp" name="Nitrate reductase Menaquinol 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2255 and STM2256 and STM2259 and STM2260 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_p" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_no2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3R2pp" name="Nitrate reductase Menaquinol 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1580 and STM1579 and STM1578 and STM1577 ) or ( STM1764 and STM1763 and STM1762 and STM1761 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_no3_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_no2_c" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3t7pp" name="nitrate transport in via nitrite antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1765 or STM1576 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_p" stoichiometry="1"/>
+ <speciesReference species="M_no2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_p" stoichiometry="1"/>
+ <speciesReference species="M_no3_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NO3tex" name="nitrate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM2267 or STM1473 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NODOx" name="nitric oxide dioxygenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2556</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ <speciesReference species="M_no_c" stoichiometry="2"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_no3_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NODOy" name="nitric oxide dioxygenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2556</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_no_c" stoichiometry="2"/>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_no3_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NOtex" name="nitric oxide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NOtpp" name="NO transport diffusion " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NPHS" name="naphthoate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2307</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbzcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_dhna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD1" name="5 nucleotidase dUMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 or STM4559.S )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_duri_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD10" name="5 nucleotidase XMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD10pp" name="5 nucleotidase XMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD11" name="5 nucleotidase IMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD11pp" name="5 nucleotidase IMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_ins_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD12" name="5 nucleotidase dIMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_din_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD12pp" name="5 nucleotidase dIMP periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_din_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD1pp" name="5 nucleotidase dUMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD2" name="5 nucleotidase UMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4559.S or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_uri_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD2pp" name="5 nucleotidase UMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_ump_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD3" name="5 nucleotidase dCMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2927 or STM2332 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD3pp" name="5 nucleotidase dCMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_dcyt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD4" name="5 nucleotidase CMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_cytd_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD4pp" name="5 nucleotidase CMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_cytd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD5" name="5 nucleotidase dTMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 or STM4559.S )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD5pp" name="5 nucleotidase dTMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_thymd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD6" name="5 nucleotidase dAMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_damp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD6pp" name="5 nucleotidase dAMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD7" name="5 nucleotidase AMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD7pp" name="5 nucleotidase AMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD8" name="5 nucleotidase dGMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD8pp" name="5 nucleotidase dGMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_dgsn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD9" name="5 nucleotidase GMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_gsn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTD9pp" name="5 nucleotidase GMP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_gmp_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP1" name="nucleoside triphosphatase ATP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0659 or STM4349 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP10" name="nucleoside triphosphatase ITP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4584 or STM4349 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_itp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP11" name="nucleoside triphosphatase dITP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4584</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ditp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_didp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP12" name="nucleoside triphosphatase XTP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4584</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_xdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP3" name="nucleoside triphosphatase GTP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4349</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTP5" name="nucleoside triphosphatase CTP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4349</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP1" name="Nucleoside triphosphate pyrophosphorylase dgtp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM0137 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_dgmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP10" name="Nucleoside triphosphate pyrophosphorylase ditp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3103</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ditp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dimp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP11" name="Nucleoside triphosphate pyrophosphorylase xtp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3103</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP2" name="Nucleoside triphosphate pyrophosphorylase gtp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0137 or STM2954 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP3" name="Nucleoside triphosphate pyrophosphorylase dctp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM2295 or STM1301 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcmp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP4" name="Nucleoside triphosphate pyrophosphorylase ctp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM1301 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP5" name="Nucleoside triphosphate pyrophosphorylase datp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM1900 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_datp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_damp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP6" name="Nucleoside triphosphate pyrophosphorylase atp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2954</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP7" name="Nucleoside triphosphate pyrophosphorylase dttp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2295 or STM2954 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dttp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dtmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP8" name="Nucleoside triphosphate pyrophosphorylase utp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2954</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_utp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPP9" name="Nucleoside triphosphate pyrophosphorylase itp " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3103</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_itp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_imp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPTP1" name="Nucleoside triphosphate tripolyhydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0208</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1"/>
+ <speciesReference species="M_dgsn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTPTP2" name="Nucleoside triphosphate tripolyhydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0208</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1"/>
+ <speciesReference species="M_gsn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTRIR2x" name="nitrite Reductase NADH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3474 and STM3475 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="5"/>
+ <speciesReference species="M_nadh_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="3"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTRIR3pp" name="nitrite Reductase Ubiquinole 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4277 and STM4278.S and STM4279 and STM4280 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="3"/>
+ <speciesReference species="M_no2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ <speciesReference species="M_nh4_p" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NTRIR4pp" name="nitrite Reductase Menaquinole 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4277 and STM4278.S and STM4279 and STM4280 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="3"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_no2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="2"/>
+ <speciesReference species="M_nh4_p" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O2Stex" name="superoxide anion transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2s_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O2tex" name="oxygen transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_O2tpp" name="o2 transport via diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAADC" name="oxaloacetate decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1884</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OBTFL" name="2 Oxobutanoate formate lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM0970 and STM0973 ) and STM2646 ) or ( STM0970 and STM0973 ) or ( STM0970 and STM3241 ) )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_2obut_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCDCAtexi" name="Octadecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCDCEAtexi" name="Octadecenoate n C181 transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCTAtex" name="Octanoate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCTDPS" name="Octaprenyl pyrophosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3305</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c" stoichiometry="1"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="5"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="5"/>
+ <speciesReference species="M_octdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ODECOAI" name="Octadecenoyl coa cis trans isomerization" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3983</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_odecoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_od2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OHPBAT" name="O Phospho 4 hydroxy L threonine2 oxoglutarate aminotransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0977</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_ohpb_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phthr_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OHPHM" name="2 octaprenyl 6 hydroxyphenol methylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2276</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ohph_c" stoichiometry="1"/>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMBZLM" name="2 Octaprenyl 6 methoxy benzoquinol methylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3970</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_2ombzl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ommbl_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMCDC" name="2 Oxo 4 methyl 3 carboxypentanoate decarboxylation" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0112</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c4mop_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_4mop_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMMBLHX" name="2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0671</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ <speciesReference species="M_2ommbl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omhmbl_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMMBLHX3" name="2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase anaerobic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ <speciesReference species="M_2ommbl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omhmbl_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMPDC" name="orotidine 5 phosphate decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1707</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMPHHX" name="2 octaprenyl 6 methoxyphenol hydroxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3057</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2omph_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ombzl_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMPHHX3" name="2 octaprenyl 6 methoxyphenol hydroxylase anaerobic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_2omph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ombzl_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPHBDC" name="Octaprenyl hydroxybenzoate decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3978 or STM2356 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ophb_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_2oph_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPHHX" name="2 Octaprenylphenol hydroxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3972</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ <speciesReference species="M_2oph_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ohph_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OPHHX3" name="2 Octaprenylphenol hydroxylase anaerobic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ <speciesReference species="M_2oph_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ohph_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORNDC" name="Ornithine Decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3114 or STM0701 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORNabcpp" name="ornithine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2355 and STM2352 and STM2351 and STM2353 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_orn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORNtex" name="ornithine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OROTt2_2pp" name="Orotate transport via proton symport 2 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_orot_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAAt2_2pp" name="Oxaloacetate transport via proton symport 2 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oaa_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OROTtex" name="Orotate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM0320 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAAtex" name="Oxaloacetate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM0320 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oaa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORPT" name="orotate phosphoribosyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3733</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_orot5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ <speciesReference species="M_orot_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OXAMTC" name="oxamate transcarbamoylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_oxur_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbp_c" stoichiometry="1"/>
+ <speciesReference species="M_oxam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OXGDC2" name="2 oxoglutarate decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2309</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ssaltpp_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_P5CD" name="1 pyrroline 5 carboxylate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_P5CR" name="pyrroline 5 carboxylate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0386</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA120abcpp" name="phosphatidate transport via ABC system n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa120_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa120_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA140abcpp" name="phosphatidate transport via ABC system n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa140_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa140_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA141abcpp" name="phosphatidate transport via ABC system n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa141_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pa141_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA160abcpp" name="phosphatidate transport via ABC system n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa160_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa160_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA161abcpp" name="phosphatidate transport via ABC system n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa161_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA180abcpp" name="phosphatidate transport via ABC system n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa180_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PA181abcpp" name="phosphatidate transport via ABC system n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa181_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PACALDt2rpp" name="phenylacetaldehyde reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pacald_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pacald_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PACALDtex" name="phenethylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pacald_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pacald_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PANTS" name="pantothenate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0181</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ala__B_c" stoichiometry="1"/>
+ <speciesReference species="M_pant__R_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_pnto__R_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA120" name="Phosphatidate phosphatase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa120_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr120_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA120pp" name="Phosphatidate phosphatase periplasmic n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_12dgr120_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA140" name="Phosphatidate phosphatase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_12dgr140_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA140pp" name="Phosphatidate phosphatase periplasmic n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr140_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA141" name="Phosphatidate phosphatase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa141_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA141pp" name="Phosphatidate phosphatase periplasmic n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_12dgr141_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA160" name="Phosphatidate phosphatase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA160pp" name="Phosphatidate phosphatase periplasmic n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_12dgr160_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA161" name="Phosphatidate phosphatase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_12dgr161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA161pp" name="Phosphatidate phosphatase periplasmic n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA180" name="Phosphatidate phosphatase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa180_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_12dgr180_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA180pp" name="Phosphatidate phosphatase periplasmic n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_12dgr180_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA181" name="Phosphatidate phosphatase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_12dgr181_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPA181pp" name="Phosphatidate phosphatase periplasmic n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPPT3" name="phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0125</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ugmda_c" stoichiometry="1"/>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uagmda_c" stoichiometry="1"/>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPSR" name="phosphoadenylyl sulfate reductase thioredoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2946 and STM2649 ) or ( STM2946 and STM3915 ) )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ <speciesReference species="M_paps_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ <speciesReference species="M_pap_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PAPSR2" name="phosphoadenylyl sulfate reductase glutaredoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2946 and STM0872 ) or ( STM2946 and STM1165 ) or ( STM2946 and STM1433 ) or ( STM2946 and STM3702 ) )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c" stoichiometry="1"/>
+ <speciesReference species="M_paps_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxox_c" stoichiometry="1"/>
+ <speciesReference species="M_so3_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDH" name="pyruvate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0152 and STM0153 and STM0154 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDX5PO2" name="pyridoxine 5 phosphate oxidase anaerboic" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDX5POi" name="pyridoxine 5 phosphate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1448</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDX5PS" name="Pyridoxine 5 phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0091 or STM0163 ) and STM2578 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_phthr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PDXPP" name="Pyridoxine 5 phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE120abcpp" name="phosphatidylethanolamine transport via ABC system n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe120_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_pe120_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE140abcpp" name="phosphatidylethanolamine transport via ABC system n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe140_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe140_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE141abcpp" name="phosphatidylethanolamine transport via ABC system n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe141_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_pe141_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE160abcpp" name="phosphatidylethanolamine transport via ABC system n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe160_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe160_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE161abcpp" name="phosphatidylethanolamine transport via ABC system n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pe161_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pe161_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE180abcpp" name="phosphatidylethanolamine transport via ABC system n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe180_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe180_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PE181abcpp" name="phosphatidylethanolamine transport via ABC system n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe181_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pe181_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PEAMNtex" name="phenethylamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_peamn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_peamn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PERD" name="Erythronate 4 phosphate 4per dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2370</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4per_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ohpb_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PETNT161pp" name="phosphoethanolamine transferase c C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3635</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe161_p" stoichiometry="1"/>
+ <speciesReference species="M_lipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_p" stoichiometry="1"/>
+ <speciesReference species="M_enlipa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PETNT181pp" name="phosphoethanolamine transferase c C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3635</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe181_p" stoichiometry="1"/>
+ <speciesReference species="M_lipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_p" stoichiometry="1"/>
+ <speciesReference species="M_enlipa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFK" name="phosphofructokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4062 or STM1326 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFK_2" name="Phosphofructokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4062 or STM3257 or STM1326 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag6p__D_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tagdp__D_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFL" name="pyruvate formate lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0970 and STM0973 ) or ( STM0970 and STM3241 ) or ( STM4114 and STM4115 ) or ( STM0843 and STM0844 ))</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG120abcpp" name="phosphatidylglycerol transport via ABC system n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pg120_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG140abcpp" name="phosphatidylglycerol transport via ABC system n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg140_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG141abcpp" name="phosphatidylglycerol transport via ABC system n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg141_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg141_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG160abcpp" name="phosphatidylglycerol transport via ABC system n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg160_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG161abcpp" name="phosphatidylglycerol transport via ABC system n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg161_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG180abcpp" name="phosphatidylglycerol transport via ABC system n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg180_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pg180_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PG181abcpp" name="phosphatidylglycerol transport via ABC system n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg181_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg181_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGAMT" name="phosphoglucosamine mutase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3294</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGCD" name="phosphoglycerate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3062</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_3pg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3php_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGI" name="glucose 6 phosphate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4221</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGK" name="phosphoglycerate kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3069</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_13dpg_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGL" name="6 phosphogluconolactonase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0785</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_6pgl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGLYCP" name="Phosphoglycolate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3482</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pglyc_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGM" name="phosphoglycerate mutase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3704 or STM4585 or STM0772 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGMT" name="phosphoglucomutase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0698 or STM2820 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP120abcpp" name="phosphatidylglycerophosphate transport via ABC system n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp120_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp120_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP140abcpp" name="phosphatidylglycerophosphate transport via ABC system n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp140_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp140_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP141abcpp" name="phosphatidylglycerophosphate transport via ABC system n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp141_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp141_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP160abcpp" name="phosphatidylglycerophosphate transport via ABC system n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp160_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp160_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP161abcpp" name="phosphatidylglycerophosphate transport via ABC system n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp161_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp161_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP180abcpp" name="phosphatidylglycerophosphate transport via ABC system n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp180_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp180_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGP181abcpp" name="phosphatidylglycerophosphate transport via ABC system n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp181_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp181_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP120" name="phosphatidylglycerol phosphate phosphatase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp120_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP120pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP140" name="phosphatidylglycerol phosphate phosphatase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp140_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg140_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP140pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pgp140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP141" name="phosphatidylglycerol phosphate phosphatase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp141_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP141pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP160" name="phosphatidylglycerol phosphate phosphatase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp160_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg160_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP160pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp160_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg160_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP161" name="phosphatidylglycerol phosphate phosphatase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp161_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP161pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pgp161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP180" name="phosphatidylglycerol phosphate phosphatase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp180_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg180_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP180pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg180_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP181" name="phosphatidylglycerol phosphate phosphatase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp181_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGPP181pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp181_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA120" name="Phosphatidylglycerol synthase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp120_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA140" name="Phosphatidylglycerol synthase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp140_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA141" name="Phosphatidylglycerol synthase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp141_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA160" name="Phosphatidylglycerol synthase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp160_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA161" name="Phosphatidylglycerol synthase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp161_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA180" name="Phosphatidylglycerol synthase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp180_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PGSA181" name="Phosphatidylglycerol synthase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pgp181_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEMEabcpp" name="protoheme transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2254 and STM2253 and STM2252 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pheme_p" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEMEtiex" name="protoheme transport irreversible out via diffusion periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pheme_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHETA1" name="phenylalanine transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3903 or STM0998 or STM4248 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phpyr_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHETRS" name="Phenylalanyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1338 and STM1337 )</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaphe_c" stoichiometry="1"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phetrna_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEt2rpp" name="L phenylalanine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0568 or STM0150 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phe__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PHEtex" name="L phenylalanine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phe__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PIt2rpp" name="phosphate reversible transport via symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3589</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PItex" name="phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PIuabcpp" name="phosphate transport via ABC system uptake periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3855 and STM3854 and STM3856 and STM3857 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A120pp" name="Phospholipase A1 phosphatidate n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddecg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A140pp" name="Phospholipase A1 phosphatidate n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdecg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A141pp" name="Phospholipase A1 phosphatidate n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_2tdec7eg3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A160pp" name="Phospholipase A1 phosphatidate n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pa160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdecg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A161pp" name="Phospholipase A1 phosphatidate n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pa161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdec9eg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A180pp" name="Phospholipase A1 phosphatidate n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_2odecg3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1A181pp" name="Phospholipase A1 phosphatidate n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_2odec11eg3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E120pp" name="Phospholipase A1 phosphatidylethanolamine n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpe120_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E140pp" name="Phospholipase A1 phosphatidylethanolamine n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe140_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpe140_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E141pp" name="Phospholipase A1 phosphatidylethanolamine n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe141_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E160pp" name="Phospholipase A1 phosphatidylethanolamine n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pe160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpe160_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E161pp" name="Phospholipase A1 phosphatidylethanolamine n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe161_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpe161_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E180pp" name="Phospholipase A1 phosphatidylethanolamine n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpe180_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1E181pp" name="Phospholipase A1 phosphatidylethanolamine n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe181_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpe181_p" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G120pp" name="Phospholipase A1 phosphatidylglycerol n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pg120_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg120_p" stoichiometry="1"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G140pp" name="Phospholipase A1 phosphatidylglycerol n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg140_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G141pp" name="Phospholipase A1 phosphatidylglycerol n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpg141_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G160pp" name="Phospholipase A1 phosphatidylglycerol n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pg160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G161pp" name="Phospholipase A1 phosphatidylglycerol n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpg161_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G180pp" name="Phospholipase A1 phosphatidylglycerol n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpg180_p" stoichiometry="1"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA1G181pp" name="Phospholipase A1 phosphatidylglycerol n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pg181_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_2agpg181_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A120pp" name="Phospholipase A2 phosphatidate n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_1ddecg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A140pp" name="Phospholipase A2 phosphatidate n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1tdecg3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A141pp" name="Phospholipase A2 phosphatidate n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1tdec7eg3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A160pp" name="Phospholipase A2 phosphatidate n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ <speciesReference species="M_1hdecg3p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A161pp" name="Phospholipase A2 phosphatidate n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pa161_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdec9eg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A180pp" name="Phospholipase A2 phosphatidate n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pa180_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_1odecg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2A181pp" name="Phospholipase A2 phosphatidate n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pa181_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odec11eg3p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E120pp" name="Phospholipase A2 phosphatidylethanolamine n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe120_p" stoichiometry="1"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E140pp" name="Phospholipase A2 phosphatidylethanolamine n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe140_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpe140_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E141pp" name="Phospholipase A2 phosphatidylethanolamine n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpe141_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E160pp" name="Phospholipase A2 phosphatidylethanolamine n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe160_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe160_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E161pp" name="Phospholipase A2 phosphatidylethanolamine n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe161_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpe161_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E180pp" name="Phospholipase A2 phosphatidylethanolamine n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpe180_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2E181pp" name="Phospholipase A2 phosphatidylethanolamine n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pe181_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpe181_p" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G120pp" name="Phospholipase A2 phosphatidylglycerol n C120 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg120_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G140pp" name="Phospholipase A2 phosphatidylglycerol n C140 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg140_p" stoichiometry="1"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G141pp" name="Phospholipase A2 phosphatidylglycerol n C141 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg141_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G160pp" name="Phospholipase A2 phosphatidylglycerol n C160 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pg160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg160_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G161pp" name="Phospholipase A2 phosphatidylglycerol n C161 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg161_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G180pp" name="Phospholipase A2 phosphatidylglycerol n C180 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg180_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PLIPA2G181pp" name="Phospholipase A2 phosphatidylglycerol n C181 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pg181_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_1agpg181_p" stoichiometry="1"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PMDPHT" name="pyrimidine phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aprbu_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4r5au_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PMPK" name="phosphomethylpyrimidine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2146</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4ampm_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_2mahmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PNTK" name="pantothenate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4139</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto__R_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_4ppan_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PNTOt4pp" name="Pantothenate sodium symporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3382</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_pnto__R_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ <speciesReference species="M_pnto__R_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PNTOtex" name="Pantothenate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto__R_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pnto__R_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_POX" name="pyruvate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0935</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPA" name="inorganic diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4414 or STM2502 or STM2927 )</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPA2" name="inorganic triphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2927 or STM2502 )</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPAKr" name="Propionate kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3242 or STM2057 or STM2337 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppap_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPALtex" name="propanal transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPALtpp" name="propanal transport via channel periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPAt4pp" name="NaPropionate symporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1125</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_p" stoichiometry="1"/>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_c" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPAtex" name="propionate transport via diffusion" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPBNGS" name="porphobilinogen synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0372</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aop_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ppbng_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPC" name="phosphoenolpyruvate carboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4119</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPCDC" name="phosphopantothenoylcysteine decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3730</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4ppcys_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_pan4p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPCK" name="phosphoenolpyruvate carboxykinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3500</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPGPPDP" name="guanosine 3 5 bis diphosphate 3 diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3742</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ppgpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPK2r" name="polyphosphate kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2501</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPKr" name="polyphosphate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2501</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPM" name="phosphopentomutase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4569</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPM2" name="phosphopentomutase 2 deoxyribose " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4569</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPNCL2" name="phosphopantothenate cysteine ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3730</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_4ppan_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_4ppcys_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPND" name="prephenate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2669</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pphn_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34hpp_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPNDH" name="prephenate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2667</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pphn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phpyr_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPGO" name="protoporphyrinogen oxidase aerobic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3987</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1.5"/>
+ <speciesReference species="M_pppg9_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppp9_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPGO3" name="protoporphyrinogen oxidase anaerobic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3987</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppg9_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppp9_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPNt2rpp" name="3 phenylpropionate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2554</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPPNtex" name="3 phenylpropionate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPS" name="phosphoenolpyruvate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1349</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PPTtex" name="Phosphonate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAGSr" name="phosphoribosylglycinamide synthase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4175</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pram_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gar_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAIS" name="phosphoribosylaminoimidazole synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2499.S</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_fpram_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_air_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAIi" name="phosphoribosylanthranilate isomerase irreversible " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1725</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pran_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2cpr5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRAMPC" name="phosphoribosyl AMP cyclohydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2078</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_prbamp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prfp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRASCSi" name="phosphoribosylaminoimidazolesuccinocarboxamide synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2487</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_5aizc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_25aics_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRATPP" name="phosphoribosyl ATP pyrophosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2078</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_prbatp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_prbamp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRFGS" name="phosphoribosylformylglycinamidine synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2565</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1"/>
+ <speciesReference species="M_fgam_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fpram_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRMICI" name="1 5 phosphoribosyl 5 5 phosphoribosylamino methylideneamino imidazole 4 carboxamide isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2076</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prfp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prlp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROD2" name="Proline dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROGLYabcpp" name="L Prolinylglycine Pro Gly transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_progly_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_progly_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROGLYtex" name="L Prolinylglycine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_progly_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROTRS" name="Prolyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0242</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnapro_c" stoichiometry="1"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_protrna_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROabcpp" name="L proline transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROt4pp" name="NaProline L symporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1125</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_pro__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_c" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROtex" name="L proline transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PRPPS" name="phosphoribosylpyrophosphate synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1780</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSCLYStex" name="psicoselysine transporter via diffusion extracellular " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_psclys_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_psclys_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSCVT" name="3 phosphoshikimate 1 carboxyvinyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0978</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_skm5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3psme_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD120" name="Phosphatidylserine decarboxylase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps120_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe120_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD140" name="Phosphatidylserine decarboxylase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps140_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_pe140_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD141" name="Phosphatidylserine decarboxylase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps141_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe141_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD160" name="Phosphatidylserine decarboxylase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps160_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_pe160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD161" name="Phosphatidylserine decarboxylase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps161_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_pe161_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD180" name="Phosphatidylserine decarboxylase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps180_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe180_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSD181" name="Phosphatidylserine decarboxylase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps181_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe181_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSERT" name="phosphoserine transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0977</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3php_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSERtex" name="phospho L serine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pser__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pser__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSP_L" name="phosphoserine phosphatase L serine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4578</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSP_Lpp" name="phospho L serine phosphatase periplasmic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_pser__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA120" name="Phosphatidylserine syntase n C120 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ps120_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA140" name="Phosphatidylserine syntase n C140 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ps140_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA141" name="Phosphatidylserine syntase n C141 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_ps141_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA160" name="Phosphatidylserine syntase n C160 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ps160_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA161" name="Phosphatidylserine syntase n C161 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ps161_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA180" name="Phosphatidylserine syntase n C180 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_ps180_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSSA181" name="Phosphatidylserine syntase n C181 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1"/>
+ <speciesReference species="M_ps181_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTA2" name="Phosphate acetyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2338 ) or ( STM2047 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppap_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTAr" name="phosphotransacetylase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2338 or STM2466 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_actp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTHRpp" name="phospho L threonine phosphatase periplasmic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_thrp_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTPATi" name="pantetheine phosphate adenylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3725</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pan4p_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dpcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCORNt7pp" name="putrescineornithine antiporter periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0700</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_p" stoichiometry="1"/>
+ <speciesReference species="M_orn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orn_p" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCTA" name="Putrescine Transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3218</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abutn_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCabcpp" name="putrescine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0877 and STM0878 and STM0879 and STM0880 ) or ( STM1226 and STM1225 and STM1223 and STM1222 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCt2pp" name="putrescine transport in via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0700</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PTRCtex" name="putrescine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP1" name="purine nucleoside phosphorylase Adenosine " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4570</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_r1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP2" name="purine nucleoside phosphorylase Deoxyadenosine " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4570</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_dad__2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP3" name="purine nucleoside phosphorylase Guanosine " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_gsn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c" stoichiometry="1"/>
+ <speciesReference species="M_gua_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP4" name="purine nucleoside phosphorylase Deoxyguanosine " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1"/>
+ <speciesReference species="M_gua_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP5" name="purine nucleoside phosphorylase Inosine " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c" stoichiometry="1"/>
+ <speciesReference species="M_hxan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP6" name="purine nucleoside phosphorylase Deoxyinosine " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1"/>
+ <speciesReference species="M_hxan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PUNP7" name="purine nucleoside phosphorylase Xanthosine " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c" stoichiometry="1"/>
+ <speciesReference species="M_xan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYAM5PO" name="pyridoxamine 5 phosphate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1448</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDAMK" name="pyridoxamine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2435</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydam_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXK" name="pyridoxal kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2435 or STM1450 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXNK" name="pyridoxine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2435</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXPP" name="Pyridoxal 5 phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_pydx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYK" name="pyruvate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1888 or STM1378 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYNP2r" name="pyrimidine nucleoside phosphorylase uracil " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3968</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_uri_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_c" stoichiometry="1"/>
+ <speciesReference species="M_r1p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYRt2rpp" name="pyruvate reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYRtex" name="pyruvate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QMO2" name="quinol monooxygenase Ubiquinol 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3180</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2s_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QMO3" name="quinol monooxygenase menaquinol 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3180</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_QULNS" name="quinolinate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0756</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_iasp_c" stoichiometry="1"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_quln_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R5PP" name="ribose 5 phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R5PPpp" name="ribose 5 phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_r5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_rib__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_R5Ptex" name="Ribose 5 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBFK" name="riboflavin kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0045</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBFSa" name="riboflavin synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1426</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4r5au_c" stoichiometry="1"/>
+ <speciesReference species="M_db4p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmlz_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBFSb" name="riboflavin synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0417</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmlz_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4r5au_c" stoichiometry="1"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBK" name="ribokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3885 or STM3793 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBK_L1" name="L ribulokinase L ribulose " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0103</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbl__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RBP4E" name="L ribulose phosphate 4 epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0101 or STM4388 or STM3677 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RHAT1" name="rhamnosyltransferase I LPS core biosynthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3720</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1"/>
+ <speciesReference species="M_kphphhlipa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icolipa_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RHCCE" name="S ribosylhomocysteine cleavage enzyme" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2817</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rhcys_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hcys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_dhptd_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RIBabcpp" name="D ribose transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3882 and STM3884 and STM3883 and STM3881 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_rib__D_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RIBtex" name="ribose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rib__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMI" name="L rhamnose isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4046</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rml_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMK" name="rhamnulokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4047</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_rml_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rml1p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMNtex" name="L rhamnose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rmn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMNtpp" name="L rhamnose transport via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4050</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RMPA" name="Rhamnulose 1 phosphate aldolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4045</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rml1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lald__L_c" stoichiometry="1"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR1" name="ribonucleoside diphosphate reductase ADP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dadp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR1b" name="ribonucleoside diphosphate reductase ADP glutaredoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_grxrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxox_c" stoichiometry="1"/>
+ <speciesReference species="M_dadp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR2" name="ribonucleoside diphosphate reductase GDP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ <speciesReference species="M_dgdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR2b" name="ribonucleoside diphosphate reductase GDP glutaredoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3702 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxox_c" stoichiometry="1"/>
+ <speciesReference species="M_dgdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR3" name="ribonucleoside diphosphate reductase CDP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdp_c" stoichiometry="1"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ <speciesReference species="M_dcdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR3b" name="ribonucleoside diphosphate reductase CDP glutaredoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdp_c" stoichiometry="1"/>
+ <speciesReference species="M_grxrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxox_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dcdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR4" name="ribonucleoside diphosphate reductase UDP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dudp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNDR4b" name="ribonucleoside diphosphate reductase UDP glutaredoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) or ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_grxrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grxox_c" stoichiometry="1"/>
+ <speciesReference species="M_dudp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR1c" name="ribonucleoside triphosphate reductase ATP flavodoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3045 and STM4084 and STM4452 and STM4451 ) or ( STM3045 and STM4452 ) or ( STM0694 and STM4452 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldrd_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fldox_c" stoichiometry="1"/>
+ <speciesReference species="M_datp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR2c" name="ribonucleoside triphosphate reductase GTP flavodoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0694 and STM4452 ) or ( STM3045 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldrd_c" stoichiometry="1"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fldox_c" stoichiometry="1"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR3c" name="ribonucleoside triphosphate reductase CTP flavodoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3045 and STM4452 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) or ( STM0694 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldrd_c" stoichiometry="1"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fldox_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dctp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNTR4c" name="ribonucleoside triphosphate reductase UTP flavodoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0694 and STM4084 and STM4452 and STM4451 ) or ( STM3045 and STM4452 ) or ( STM0694 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_utp_c" stoichiometry="1"/>
+ <speciesReference species="M_fldrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dutp_c" stoichiometry="1"/>
+ <speciesReference species="M_fldox_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RPE" name="ribulose 5 phosphate 3 epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3483 or STM4080 or STM1617 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RPI" name="ribose 5 phosphate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3063 or STM1933 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_S7PI" name="sedoheptulose 7 phosphate isomerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0310</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_s7p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmhep7p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SADH" name="Succinylarginine dihydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1306</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucarg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucorn_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SADT2" name="Sulfate adenyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2934 and STM2935 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_c" stoichiometry="1"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_aps_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SBTPD" name="sorbitol 6 phosphate dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2835</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt6p_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SBTptspp" name="D sorbitol transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2431 and STM2432 and STM2832 and STM2834 and STM2833 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt__D_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sbt6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SBTtex" name="D sorbitol transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sbt__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SDPDS" name="succinyl diaminopimelate desuccinylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2483</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sl26da_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap__LL_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SDPTA" name="succinyldiaminopimelate transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3468</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_sl26da_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_sl2a6o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELCYSS" name="selenocysteine synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3683</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_selnp_c" stoichiometry="1"/>
+ <speciesReference species="M_sertrna__sec___c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sectrna_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SELNPS" name="Selenophosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1297</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_seln_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_selnp_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERASr" name=" L seryl adenylate synthase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0588</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_seramp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERAT" name="serine O acetyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3699</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERD_D" name="D serine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3802</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERTRS" name="Seryl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0963</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaser_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_sertrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERTRS2" name="Seryl tRNA synthetase selenocystein " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0963</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trnasecys_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_sertrna__sec___c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERt2rpp" name="L serine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2970 or STM3243 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERt4pp" name="L serine via sodium symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3225</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERtex" name="L serine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SFGTHi" name="S Formylglutathione hydralase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2194</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_Sfglutth_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="1"/>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SGDS" name="Succinylglutamate desuccinylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1307</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_sucglu_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SGSAD" name="Succinylglutamic semialdehyde dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1305</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucgsa_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucglu_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHCHCS2" name="2 succinyl 6 hydroxy 2 4 cyclohexadiene 1 carboxylate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2309</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ssaltpp_c" stoichiometry="1"/>
+ <speciesReference species="M_ichor_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_2shchc_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHCHD2" name="sirohydrochlorin dehydrogenase NAD " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3477</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_dscl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_scl_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHCHF" name="sirohydrochlorin ferrochetalase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3477</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_c" stoichiometry="1"/>
+ <speciesReference species="M_scl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sheme_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHK3Dr" name="shikimate dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1359 or STM3401 or STM3859 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_3dhsk_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_skm_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHKK" name="shikimate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3487 or STM0388 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_skm_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_skm5p_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SKMtex" name="shikimate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_skm_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_skm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO2tex" name="SO2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO2tpp" name="SO2 transport via diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO3tex" name="sulfite transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO4tex" name="sulfate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so4_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SOTA" name="Succinylornithine transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1303</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucorn_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucgsa_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDAT1" name="Spermidine acetyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1502</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_N1aspmd_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDAT2" name="Spermidine acetyltransferase N8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1502</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n8aspmd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDabcpp" name="spermidine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1226 and STM1225 and STM1223 and STM1222 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_spmd_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_spmd_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMDtex" name="spermidine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_spmd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPMS" name="spermidine synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0166</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ametam_c" stoichiometry="1"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mta_c" stoichiometry="1"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPODM" name="superoxide dismutase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4055 or STM1431 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SPODMpp" name="superoxide dismutase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1440 or STM1044 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_p" stoichiometry="2"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_p" stoichiometry="1"/>
+ <speciesReference species="M_o2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SSALx" name="succinate semialdehyde dehydrogenase NAD " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_sucsal_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SSALy" name="succinate semialdehyde dehydrogenase NADP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2791</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_sucsal_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCBZL" name="o succinylbenzoate CoA ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2305</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_sucbz_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sbzcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCBZS" name="O succinylbenzoate CoA synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2306</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2shchc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucbz_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCt2_2pp" name="succinate transport via proton symport 2 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_succ_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCt3pp" name="succinate transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCtex" name="succinate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCDi" name="succinate dehydrogenase irreversible " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0732 and STM0733 and STM0734 and STM0735 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCOAS" name="succinyl CoA synthetase ADP forming " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0738 and STM0739 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succoa_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCRtex" name="sucrose transport transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucr_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucr_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SULFACtex" name="sulfoaceate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sulfac_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sulfac_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SULRi" name="sulfite reductase NADPH2 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2947 and STM2948 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="3"/>
+ <speciesReference species="M_h_c" stoichiometry="5"/>
+ <speciesReference species="M_so3_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="3"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SULabcpp" name="sulfate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2441 and STM2443 and STM2442 and STM4063 ) or ( STM0781 and STM0782 and STM0783 ) or ( STM2441 and STM2444 and STM2443 and STM2442 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_so4_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so4_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_T2DECAI" name="trans 2 decenoyl ACP isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1067</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdec3eACP_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TALA" name="transaldolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2473 or STM0007 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_s7p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_e4p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTRtex" name="Tartrate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAURtex" name="taurine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_taur_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_taur_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TCYNTtex" name="Thiocyanate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcynt_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcynt_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDECOAI" name="tetradecenoyl coa cis trans isomerization" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3983</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdecoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_td2coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDP" name="thiamin pyrophosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1235</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thmpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thmmp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPADGAT" name="dTDP 4 amino 4 6 dideoxy D glucose acetyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3924</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4addg_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp4aaddg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPAGTA" name="dTDP 4 amino 4 6 dideoxy D glucose transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3925</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp4addg_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPDRE" name="dTDP 4 dehydrorhamnose 3 5 epimerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2094</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp4d6dm_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPDRR" name="dTDP 4 dehydrorhamnose reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2096</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp4d6dm_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDPGDH" name="dTDPglucose 4 6 dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2097 or STM3922 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdpglu_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDSK" name="Tetraacyldisaccharide 4 kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0985</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipidAds_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_lipidA_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDSR1" name="thioldisulfide reductase DsbC " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3043 and STM4323 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbcox_p" stoichiometry="1"/>
+ <speciesReference species="M_dsbdrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbcrd_p" stoichiometry="1"/>
+ <speciesReference species="M_dsbdox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TDSR2" name="thioldisulfide reductase DsbG " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4323 and STM0607 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbgox_p" stoichiometry="1"/>
+ <speciesReference species="M_dsbdrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbdox_c" stoichiometry="1"/>
+ <speciesReference species="M_dsbgrd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THD2pp" name="NAD P transhydrogenase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1480 and STM1479 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THDPS" name="tetrahydrodipicolinate succinylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0213</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_succoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ <speciesReference species="M_sl2a6o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THIORDXi" name="hydrogen peroxide reductase thioredoxin " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM0609 and STM0608 ) or ( STM0609 and STM0402) ) and ( STM2649 or STM3915 ) )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMDt2pp" name="thymidine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_thymd_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMDt2rpp" name="thymidine transport in via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_thymd_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMDtex" name="thymidine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMabcpp" name="thiamine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0108 and STM0107 and STM0106 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_thm_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_thm_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THMtex" name="Thiamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thm_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRA2i" name="L allo Threonine Aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_athr__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRAi" name="Threonine aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRD" name="L threonine dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3708</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2aobut_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRD_L" name="L threonine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3244 or STM1826 or STM2971 or STM3905 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_2obut_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRPtex" name="phospho L threonine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thrp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRS" name="threonine synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0004</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_phom_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRTRS" name="Threonyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1333</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnathr_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thrtrna_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRabcpp" name="L threonine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRt2pp" name="L threonine efflux transport via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0832 or STM3959 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRt2rpp" name="L threonine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3243</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_thr__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRt4pp" name="L threonine via sodium symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3225</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_thr__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRtex" name="L threonine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THYMt3pp" name="thymine transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thym_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THYMtex" name="thymine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thym_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TKT1" name="transketolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3076 or STM2474 or STM2341 or STM2340 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_s7p_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TKT2" name="transketolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3076 or STM2474 or STM2341 or STM2340 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1"/>
+ <speciesReference species="M_e4p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOR1pp" name="Trimethylamine N oxide reductase menaquinol 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3823 and STM3822 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmao_p" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_tma_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOR2pp" name="Trimethylamine N oxide reductase demethylmenaquinol 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3823 and STM3822 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ <speciesReference species="M_tmao_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tma_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAOtex" name="Trimethylamine N oxide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmao_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tmao_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMAtex" name="Trimethylamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tma_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tma_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMDK1" name="thymidine kinase ATPthymidine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1750</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMDPP" name="thymidine phosphorylase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4568</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1"/>
+ <speciesReference species="M_thym_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMDS" name="thymidylate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mlthf_c" stoichiometry="1"/>
+ <speciesReference species="M_dump_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_c" stoichiometry="1"/>
+ <speciesReference species="M_dhf_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMK" name="thiamine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1208</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thmmp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMPK" name="thiamine phosphate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0419</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thmmp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TMPPP" name="thiamine phosphate diphosphorylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4163</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4mpetz_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_2mahmp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_thmmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TPI" name="triose phosphate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4081</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TPRDCOAS" name="triphosphoribosyl dephospho CoA synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0619</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_dpcoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tpr3dpcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_ade_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRDR" name="thioredoxin reductase NADPH " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3915 and ( STM0958 and STM0958 ) ) or STM2649 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdrd_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRE6PH" name="trehalose 6 phosphate hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4453</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRE6PP" name="trehalose phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1929</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_tre_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRE6PS" name="alpha alpha trehalose phosphate synthase UDP forming " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1928</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_tre6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREH" name="alpha alpha trehalase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3603</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREHpp" name="alpha alpha trehalase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1796</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREptspp" name="trehalose transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2433 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_tre6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TREtex" name="trehalose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tre_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPS1" name="tryptophan synthase indoleglycerol phosphate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ig3p_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPS2" name="tryptophan synthase indole " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_indole_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPS3" name="tryptophan synthase indoleglycerol phosphate " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ig3p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPTRS" name="Tryptophanyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3481</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnatrp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_trptrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPt2rpp" name="L tryptophan reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0150 or STM3279 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRPtex" name="L tryptophan transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trp__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TRSARr" name="tartronate semialdehyde reductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0519 or STM3248 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TSULabcpp" name="thiosulfate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2441 and STM2444 and STM2443 and STM2442 ) or ( STM2441 and STM2443 and STM2442 and STM4063 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TSULtex" name="thiosulfate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTDCAtexi" name="Tetradecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTDCEAtexi" name="Tetradecenoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TUNGSabcpp" name="tungstate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0781 and STM0782 and STM0783 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tungs_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tungs_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TUNGStex" name="tungstate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tungs_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tungs_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYMtex" name="tyramine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tym_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tym_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRPpp" name="phospho L tyrosine phosphatase periplasmic " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyr__L_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRPtex" name="phopho L tyrosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyrp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRTA" name="tyrosine transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4248 or STM0998 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34hpp_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRTRS" name="tyrosyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1449</p>
+ <p>SUBSYSTEM: tRNA charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnatyr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_tyrtrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRt2rpp" name="L tyrosine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1937 or STM0150 or STM0568 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TYRtex" name="L tyrosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyr__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_U23GAAT" name="UDP 3 O 3 hydroxymyristoyl glucosamine acyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0226</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_u3hga_c" stoichiometry="1"/>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_u23ga_c" stoichiometry="1"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAAGDS" name="UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimelate synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0123</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uamag_c" stoichiometry="1"/>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ugmd_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACGALPpp" name="UDP N acetyl D galactosamine pyrophosphohydrolase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_udpacgal_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p" stoichiometry="1"/>
+ <speciesReference species="M_acgal1p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACGAMPpp" name="UDP N acetyl D glucosamine pyrophosphohydrolase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_ump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACGAMtex" name="UDP N acetyl D glucosamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uacgam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UACMAMO" name="UDP N acetyl D mannosamine oxidoreductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3921</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacmam_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_uacmamu_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAG2E" name="UDP N acetylglucosamine 2 epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3920</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uacmam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGAAT" name="UDP N acetylglucosamine acyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1196 and STM0228 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c" stoichiometry="1"/>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1"/>
+ <speciesReference species="M_u3aga_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGCVT" name="UDP N acetylglucosamine 1 carboxyvinyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3307</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uaccg_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGDP" name="UDP N acetylglucosamine diphosphorylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3862</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_utp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_uacgam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAGPT3" name="UDP N acetylglucosamine N acetylmuramyl pentapeptide pyrophosphoryl undecaprenol N acetylglucosamine transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0128</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uagmda_c" stoichiometry="1"/>
+ <speciesReference species="M_uacgam_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uaagmda_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAMAGS" name="UDP N acetylmuramoyl L alanyl D glutamate synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0126</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uama_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__D_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uamag_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAMAS" name="UDP N acetylmuramoyl L alanine synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0129</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_uamr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uama_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UAPGR" name="UDP N acetylenolpyruvoylglucosamine reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4137</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_uaccg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uamr_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPDP" name="undecaprenyl diphosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0865 or STM3205 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPDPS" name="Undecaprenyl diphosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0221</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c" stoichiometry="1"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="8"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="8"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPDPpp" name="undecaprenyl diphosphatase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0865 or STM1710 or STM3205 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPPtppi" name="undecaprenyl phosphate transport cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPACGALtex" name="UDP N acetyl D galactosamine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpacgal_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpacgal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPG4E" name="UDPglucose 4 epimerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0776</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGALPpp" name="UDPgalactose pyrophosphohydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal1p_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_ump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGALtex" name="UDPgalactose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGD" name="UDPglucose 6 dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2080</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpglcur_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGDC" name="UDP glucuronate C 4 decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2299</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_udpglcur_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpLa4o_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGLCURtex" name="UDP D glucuronate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpglcur_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpglcur_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGPpp" name="UDPglucose pyrophosphohydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_g1p_p" stoichiometry="1"/>
+ <speciesReference species="M_ump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGtex" name="UDPglucose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPKAAT" name="UDP 4 ketopentoseUDP 4 amino 4 deoxy L arabinose aminotransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2297</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpLa4o_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpLa4n_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGLCURPpp" name="UDP D glucuronate pyrophosphohydrolase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpglcur_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_glcur1p_p" stoichiometry="1"/>
+ <speciesReference species="M_ump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGLT" name="UDPglucose hexose 1 phosphate uridylyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0775</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_c" stoichiometry="1"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ <speciesReference species="M_udpgal_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGLYCH" name="Ureidoglycolate hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0515</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_urdglyc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ <speciesReference species="M_glx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UGMDDS" name="UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimeloyl D alanyl D alanine synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0124</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_alaala_c" stoichiometry="1"/>
+ <speciesReference species="M_ugmd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_ugmda_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UHGADA" name="UDP 3 O acetylglucosamine deacetylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0134</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_u3aga_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_u3hga_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ULA4NFT" name="UDP L Ara4N formyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2299</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpLa4n_c" stoichiometry="1"/>
+ <speciesReference species="M_10fthf_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1"/>
+ <speciesReference species="M_udpLa4fn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ULA4Ntppi" name="transport cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uLa4n_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uLa4n_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UM3PL" name="UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4416</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uamr_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_ugmd_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UM4PCP" name="UDP N acetylmuramoyl L alanyl D gamma glutamyl meso 2 6 diaminopimelate D alanine L D carboxypeptidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_um4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ugmd_c" stoichiometry="1"/>
+ <speciesReference species="M_ala__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UM4PL" name="UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate D alanine ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4416</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_uamr_c" stoichiometry="1"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_um4p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UMPK" name="UMP kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0980 or STM0218 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UMPtex" name="UMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UNK3" name="2 keto 4 methylthiobutyrate transamination" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4248</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2kmb_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPLA4FNF" name="undecaprenyl phosphate L Ara4FN formylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uLa4fn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1"/>
+ <speciesReference species="M_uLa4n_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPLA4FNT" name="undecaprenyl phosphate L Ara4FN transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2298</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ <speciesReference species="M_udpLa4fn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uLa4fn_c" stoichiometry="1"/>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPP3MT" name="uroporphyrinogen methyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3936 or STM3477 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="2"/>
+ <speciesReference species="M_uppg3_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dscl_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPP3S" name="uroporphyrinogen III synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3937</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hmbil_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uppg3_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPPRT" name="uracil phosphoribosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2498</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ <speciesReference species="M_ura_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URAt2pp" name="uracil transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2497</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_ura_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URAtex" name="uracil transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URDGLYCD" name="ureidoglycolate dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0528</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urdglyc_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oxur_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UREAtex" name="Urea transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UREAtpp" name="Urea transport via facilitate diffusion periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4087</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIC" name="uricase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_urate_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIDK2r" name="uridylate kinase dUMP " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0218</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dudp_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIH" name="Uridine hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0661 or STM0051 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_uri_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_c" stoichiometry="1"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIK2" name="uridine kinase GTPUridine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2122</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1"/>
+ <speciesReference species="M_uri_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIt2pp" name="uridine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URIt2rpp" name="uridine transport in via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_uri_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_URItex" name="uridine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_USHD" name="UDP sugar hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0535</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_u23ga_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ <speciesReference species="M_lipidX_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALTA" name="valine transaminase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3903</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_c" stoichiometry="1"/>
+ <speciesReference species="M_akg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mob_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALTRS" name="Valyl tRNA synthetase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4475</p>
+ <p>SUBSYSTEM: tRNA charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_val__L_c" stoichiometry="1"/>
+ <speciesReference species="M_trnaval_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_valtrna_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALabcpp" name="L valine transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_val__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_val__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALt2rpp" name="L valine reversible transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VALtex" name="L valine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_VPAMT" name="Valine pyruvate aminotransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3665</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3mob_c" stoichiometry="1"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_X5PL3E" name="L xylulose 5 phosphate 3 epimerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4387</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xu5p__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XANt2pp" name="xanthine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3747</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XANtex" name="xanthine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XANtpp" name="xanthine reversible transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XMPtex" name="XMP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xmp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XPPT" name="xanthine phosphoribosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0317</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_c" stoichiometry="1"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XTSNH" name="Xanthosine hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0051</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_xtsn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_c" stoichiometry="1"/>
+ <speciesReference species="M_xan_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XTSNt2rpp" name="Xanthosine transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XTSNtex" name="xanthosine transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLI1" name="xylose isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3661</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLI2" name="xylose isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3661</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLK" name="xylulokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3660 or STM0103 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu__D_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLK2" name="L xylulokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0103 or STM3674 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__L_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLUt2pp" name="L xylulose transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3671 and STM3672 and STM3673 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_xylu__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLUtex" name="L xylulose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLtex" name="D xylose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xyl__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_XYLt2pp" name="D xylose transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0042</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_xyl__D_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xyl__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZN2abcpp" name="Zinc Zn2 ABC transporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_zn2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_zn2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZN2t3pp" name="zinc Zn2 transport out via proton antiport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0758 or STM4061 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZN2tpp" name="zinc transport in via permease no H " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ZNabcpp" name="zinc Zn2 transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1891 and STM1893 and STM1892.S )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_zn2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Zn2tex" name="zinc Zn2 transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GCALDD" name="Glycolaldehyde dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_gcald_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THZPSN" name="thiazole phosphate synthesis" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2543 and STM4162 and ( STM4159 and STM4160 ) and STM0425 and STM4161 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ <speciesReference species="M_4hba_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_4mpetz_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_AEP_e" name="AEP exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_AEP_e" stoichiometry="1"/>
+ <speciesReference species="M_AEP_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AEPtex" name="AEP transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_AEP_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_AEP_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AEPabcpp" name="AEP transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0426 and STM0427 and STM0429 and STM0428 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_AEP_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_AEP_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AEPPYRTA" name="2 aminoethylphosphonate pyruvate transaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0431</p>
+ <p>SUBSYSTEM: aminophosphonate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_AEP_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_Pald_c" stoichiometry="1"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PALDH" name="phosphonoacetaldehyde hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0432</p>
+ <p>SUBSYSTEM: aminophosphonate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_Pald_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_4hoxpac_e" name="4 hydroxyphenylacetate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpac_e" stoichiometry="1"/>
+ <speciesReference species="M_4hoxpac_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4hoxpactex" name="4 hydroxyphenylacetate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpac_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpac_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HOXPACt2pp" name="4 hydroxyphenylacetate transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1107</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_4hoxpac_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_4hoxpac_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FLAVNADR" name="Flavin NAD P H reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1098</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HOXPACMON" name="4 hydroxyphenylacetate 3 monooxygenase nadh" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1098 or STM1099)</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_4hoxpac_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_34dhpacet_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HOXPACMOF" name="4 hydroxyphenylacetate 3 monooxygenase FADH2" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1099</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_4hoxpac_c" stoichiometry="1"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_34dhpacet_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_34DHPACDO" name="3 4 dihydroxyphenylacetate 2 3 dioxygenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1103</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpacet_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_2h5cmmusa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4C2HM6SADH" name="4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1102</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_2h5cmmusa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5cm2hmu_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5CM2HMUDI" name="5 carboxymethyl 2 hydroxymuconate delta isomerase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1104</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5cm2hmu_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5c2o3ed_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_5C2O3EDDC" name="5 carboxy 2 oxohept 3 enedioate decarboxylation" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1101</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5c2o3ed_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2HH24DDH" name="2hh24dd hydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1105</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4h2kpi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4H2KPILY" name="4h2kpi Lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1106</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4h2kpi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_sucsal_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDS2tpp" name=" S Propane 1 2 diol facilitated transport 2 periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2037</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDRDH" name=" R Propane 1 2 diol dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2040 and STM2041 and STM2042 and STM2043 and STM2044)</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_ppal_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12PPDSDH" name=" S Propane 1 2 diol dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2040 and STM2041 and STM2042 and STM2043 and STM2044)</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALCDPPAL" name="alcohol dehydrogenase Propanal " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2052</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppoh_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COAPPALDH" name="CoA dependent Propanal dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2051</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_ppal_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DSCLCOCH" name="Sirohydrochlorin cobaltochelatase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2025 or STM3477 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1"/>
+ <speciesReference species="M_dscl_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Cobalt2abcppI" name="cobalt II transport via ABC system periplasm I" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2023 and STM2022 and STM2021 and STM2020 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_Cobalt2abcppII" name="cobalt II transport via ABC system periplasm II" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2023 and STM2022 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL2MT" name="Cobalt precorrin 2 methyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2024</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl3_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL3MT" name="Cobalt precorrin 3 C17 methyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2027</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl3_c" stoichiometry="1"/>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl4_c" stoichiometry="1"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL4MT" name="Cobalt precorrin 4 methyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2029</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl5a_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL5DA" name="Cobalt precorrin 5a deacetylation" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2028</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl5a_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl5b_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL5BMT" name="Cobalt precorrin 5b methyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2032</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl5b_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl6a_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL6ARED" name="Cobalt precorrin 6a reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2026</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl6a_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl6b_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL6BMT" name="Cobalt precorrin 6b methyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2031</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl6b_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl7_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL7MTDC" name="Cobalt precorrin 7 methyltransferase decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2030</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl7_c" stoichiometry="1"/>
+ <speciesReference species="M_amet_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_codscl8x_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CODSCL8XI" name="Cobalt precorrin 8x isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2033</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl8x_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COBNAD" name="Cobyrinate amidation" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2035</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="2"/>
+ <speciesReference species="M_cobn_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_cob2nda_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COB2NDARED" name="cob II yrinate a c diamide reductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cob2nda_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cob1nda_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COB1NDAAT1" name="cob I yrinate a c diamide adenosyltransferase 1" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2050 or STM1718 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cob1nda_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1"/>
+ <speciesReference species="M_adcob1nda_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_COB1NDAAT2" name="cob I yrinate a c diamide adenosyltransferase 2" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2467</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_cob1nda_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adcob1nda_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADCOBNSYN" name="adenosylcobyric acid synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2019</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="4"/>
+ <speciesReference species="M_adcob1nda_c" stoichiometry="1"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="4"/>
+ <speciesReference species="M_atp_c" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adcobn_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="4"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_adp_c" stoichiometry="4"/>
+ <speciesReference species="M_pi_c" stoichiometry="4"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LTHRK" name="L threonine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2058</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thrp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_THRPDC" name="L threonine phosphate decarboxylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0644</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_appp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBIPS" name="Adenosyl cobinamide phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2034</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adcobn_c" stoichiometry="1"/>
+ <speciesReference species="M_appp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbip_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBLPS" name="Adenosylcobalamin phosphate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2017</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5prdmbz_c" stoichiometry="1"/>
+ <speciesReference species="M_agdpcbi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adocblp_c" stoichiometry="1"/>
+ <speciesReference species="M_gmp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBLPP" name="Adenosylcobalamin phosphate phosphatase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0643</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_adocblp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ADOCBIK" name="Adenosyl cobinamide kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2018 or STM1208 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbi_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbip_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBLAT" name="cob I alamin adenosyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1718 or STM2050 or STM2467 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbl1_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c" stoichiometry="1"/>
+ <speciesReference species="M_pppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APPK" name="1 amino 2 propanol kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_app_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_appp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_remnant1_e" name="residual atoms of reaction DMBZIDSYN exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_remnant1_e" stoichiometry="1"/>
+ <speciesReference species="M_remnant1_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_REMNANT1tex" name="residual atoms of reaction DMBZIDSYN transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_remnant1_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_remnant1_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_colipa20Oag_e" name="O antigen x20 core oligosaccharide lipid A exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa20Oag_e" stoichiometry="1"/>
+ <speciesReference species="M_colipa20Oag_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_colipa20Oagtex" name="O antigen x20 core oligosaccharide lipid A transport periplasm to extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa20Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipa20Oag_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_udcdp20OagLpp" name="O antigen x20 ligase periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3713</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp20Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_colipa20Oag_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_udcdpgalrmnmanabetpp" name="Undecaprenyl diphosphate galactose rhamnose mannose abequose flippase cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2088</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OGLT" name="galactosyltransferase LPS O antigen biosynthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2082</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ <speciesReference species="M_udpgal_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdpgal_c" stoichiometry="1"/>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ORLT" name="rhamnosyl transferase LPS O antigen biosynthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2085</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgal_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdpgalrmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OMLT" name="mannosyl transferase LPS O antigen biosynthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2086</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmn_c" stoichiometry="1"/>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnman_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OALT" name="abequosyl transferase LPS O antigen biosynthesis " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2087</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpabeq_c" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnman_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp_c" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MAN1PT2" name="mannose 1 phosphate guanylyltransferase GDP " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2105.S or STM2084 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man1p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PMANM" name="phosphomannomutase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2104 or STM2083 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP1pp" name="O antigen polymerase 1 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp2Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP2pp" name="O antigen polymerase 2 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp2Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp3Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP3pp" name="O antigen polymerase 3 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp3Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp4Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP4pp" name="O antigen polymerase 4 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp4Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp5Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP5pp" name="O antigen polymerase 5 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp5Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp6Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP6pp" name="O antigen polymerase 6 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp6Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp7Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP7pp" name="O antigen polymerase 7 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp7Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp8Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP8pp" name="O antigen polymerase 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp8Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp9Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP9pp" name="O antigen polymerase 9 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp9Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp10Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP10pp" name="O antigen polymerase 10 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp10Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp11Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP11pp" name="O antigen polymerase 11 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp11Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp12Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP12pp" name="O antigen polymerase 12 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp12Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp13Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP13pp" name="O antigen polymerase 13 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp13Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp14Oag_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP14pp" name="O antigen polymerase 14 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp14Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp15Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP15pp" name="O antigen polymerase 15 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp15Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp16Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP16pp" name="O antigen polymerase 16 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp16Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp17Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP17pp" name="O antigen polymerase 17 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp17Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp18Oag_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP18pp" name="O antigen polymerase 18 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp18Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp19Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAP19pp" name="O antigen polymerase 19 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp19Oag_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_udcdp20Oag_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_G1PCT" name="glucose 1 phosphate cytidylyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2092</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_g1p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpglc_c" stoichiometry="1"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDPGLC46DH" name="CDP glucose 4 6 dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2091</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpglc_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp4dh6doglc_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDP4D6DGLCRx" name="CDP 4 dehydro 6 deoxyglucose reductase " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2090 and STM2093 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdp4dh6doglc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_cdp4dh36ddglc_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CDPABEQS" name="CDP abequose synthase " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2089</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_cdp4dh36ddglc_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpabeq_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4FEexs" name="Salmochelin S4 Fe III binding spontaneous " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ <speciesReference species="M_salchs4_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4fe_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_SALCHS4_e" name="Salmochelin S4 exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4_e" stoichiometry="1"/>
+ <speciesReference species="M_salchs4_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_SALCHS4FE_e" name="Salmochelin S4 Fe III exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_e" stoichiometry="1"/>
+ <speciesReference species="M_salchs4fe_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4FEabcpp" name="Salmochelin S4 Fe III transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs4fe_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4tex" name="Salmochelin S4 transport secretion periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_salchs4_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4_e" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4abcpp" name="Salmochelin S4 transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2774</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs4_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTER2tpp" name="enterochelin transport2 via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2774</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_enter_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_SALCHSX_e" name="Salmochelin SX exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchsx_e" stoichiometry="1"/>
+ <speciesReference species="M_salchsx_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHSXtex" name="Salmochelin SX via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchsx_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchsx_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHSXtpp" name="Salmochelin SX facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchsx_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchsx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CSNt2pp" name="cytosine transport in via proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3333</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CSND" name="Cytosine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3334</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_csn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALCD19" name="alcohol dehydrogenase glycerol " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1627</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_glyc_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALCD2x" name="alcohol dehydrogenase ethanol " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1627 or STM1567 or STM1749 or STM2461 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FALDH2" name="formaldehyde dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1627</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hmgth_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_Sfglutth_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DPR" name="2 dehydropantoate 2 reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3909 or STM0434 or STM2573 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhp_c" stoichiometry="1"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pant__R_c" stoichiometry="1"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAHT2ex" name="core oligosaccharide lipid Ahexadecanoate transferase n C160 extracellular membrane " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0628</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_hdca_e" stoichiometry="1"/>
+ <speciesReference species="M_colipa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hacolipa_e" stoichiometry="1"/>
+ <speciesReference species="M_h2o_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LIPAHTex" name="Lipid Ahexadecanoate transferase n C160 extracellular membrane " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0628</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_hdca_e" stoichiometry="1"/>
+ <speciesReference species="M_lipa_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_halipa_e" stoichiometry="1"/>
+ <speciesReference species="M_h2o_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTBD2pp" name="cytochrome oxidase bd menaquinol 8 2 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1792 and STM1793 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYTBDpp" name="cytochrome oxidase bd ubiquinol 8 2 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1792 and STM1793 ) or ( STM0740 and STM0741 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACANTHAT" name="acetyl CoAanthranilate acetyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1582</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anth_c" stoichiometry="1"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acanth_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLTPD" name="Galactitol 1 phosphate dehydrogenase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3261</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt1p_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tag6p__D_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TGBPA" name="Tagatose bisphosphate aldolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3257 and STM3253 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tagdp__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUI1" name="glucuronate isomerase D glucuronate " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3137</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GUI2" name="glucuronate isomerase D galacturonate " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3137</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tagur_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MNNH" name="D mannonate hydrolyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3135</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mana_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2ddglcn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MANAO" name="Mannonate oxidoreductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3136</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mana_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAADCS" name="oxaloacetate decarboxylase sodium pump" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0054 and STM0055 and STM0056 ) or ( STM3351 and STM3352 and STM3353 ))</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c" stoichiometry="2"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_na1_p" stoichiometry="2"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITt4pp" name="Citrate transport via sodium symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0057</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="2"/>
+ <speciesReference species="M_cit_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="2"/>
+ <speciesReference species="M_cit_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDGLCNt2rpp" name="2 dehydro 3 deoxy D gluconate transport via proton symport reversible periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0161</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITt2pp" name="Citrate proton symport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0689</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_cit_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_cit_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CITtupp" name="Citrate transport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ICITtupp" name="Isocitrate transport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ACONCtupp" name="Cisaconitate transport periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__C_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2uabcpp" name="nickel transport via ABC system uptake periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4456 or ( STM1255 and STM1256 and STM1257 and STM1258 and STM1259 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_ni2_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALTptspp" name="Galactitol transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3258 and STM3259 and STM3260 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galt1p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tag__D_e" name="D Tagatose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag__D_e" stoichiometry="1"/>
+ <speciesReference species="M_tag__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAGtex" name="D Tagatose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tag__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAGptspp" name="D Tagatose transport via PEPPyr PTS periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3255 and STM3256 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag__D_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_tag1p__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TAG1PK" name="D Tagatose 1 phosphate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1326 or STM3254)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag1p__D_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tagdp__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE2abcpp" name="iron II transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3506 or ( STM2861 and STM2862 and STM2863 and STM2864 ))</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_fe2_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MN2abcpp" name="Manganese Mn2 transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2861 and STM2862 and STM2863 and STM2864 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_mn2_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_mn2_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TETDHpp1" name="Tetrathionate Dehydrogenase menaquinone 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tet_p" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_tsul_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TSULDHpp1" name="Thiosulfate Dehydrogenase menaquinone 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2s_p" stoichiometry="1"/>
+ <speciesReference species="M_so3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TETDHpp2" name="Tetrathionate Dehydrogenase Demethylmenaquinol 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tet_p" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ <speciesReference species="M_tsul_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TSULDHpp2" name="Thiosulfate Dehydrogenase Demethylmenaquinol 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2s_p" stoichiometry="1"/>
+ <speciesReference species="M_so3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TETDHpp3" name="Tetrathionate Dehydrogenase ubiquinone 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_tet_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_tsul_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TSULDHpp3" name="Thiosulfate Dehydrogenase ubiquinone 8 periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_so3_p" stoichiometry="1"/>
+ <speciesReference species="M_h2s_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SO3R" name="Sulfite reductase " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2548 and STM2549 and STM2550 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so3_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="5"/>
+ <speciesReference species="M_nadh_c" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="3"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MG2uabcpp" name="Magnesium Mg2 ABC transporter ubtake periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4456 or STM3763 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_mg2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPPDC1" name="uroporphyrinogen decarboxylase uroporphyrinogen III " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4167</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uppg3_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpppg3_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="4"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AIRSK" name="Aminoimidazole riboside kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4066</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_airs_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_air_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_airs_e" name="Aminoimidazole riboside exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_airs_e" stoichiometry="1"/>
+ <speciesReference species="M_airs_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AIRStex" name="Aminoimidazole riboside transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_airs_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_airs_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AIRStpp" name="Aminoimidazole riboside facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_airs_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_airs_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_REMNANT1tpp" name="residual atoms of reaction DMBZIDSYN facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_remnant1_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_remnant1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ARGDA" name="Arginine deiminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4467</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_citr__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCBT" name="ornithine carbamoyltransferase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4469 or STM4465 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbp_c" stoichiometry="1"/>
+ <speciesReference species="M_orn_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_citr__L_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CBMKr" name="Carbamate kinase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0532 or STM4466 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3PGt6pp" name="3 Phospho D glycerate phosphate antiporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_3pg_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2PGt6pp" name="D Glycerate 2 phosphate phosphate antiporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_2pg_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2pg_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PEPt6pp" name="Phosphoenolpyruvate phosphate antiporter periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_p" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_pep_e" name="Phosphoenolpyruvate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_e" stoichiometry="1"/>
+ <speciesReference species="M_pep_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PEPtex" name="Phosphoenolpyruvate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pep_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_2pg_e" name="D Glycerate 2 phosphate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_e" stoichiometry="1"/>
+ <speciesReference species="M_2pg_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2PGtex" name="D Glycerate 2 phosphate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2pg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_3pg_e" name="3 Phospho D glycerate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_e" stoichiometry="1"/>
+ <speciesReference species="M_3pg_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_3PGtex" name="3 Phospho D glycerate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SERD_L" name="L serine deaminase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3240 or STM1826 or STM2971 or STM2196 )</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTD" name="L tartrate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3355 and STM3354 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTRtpp" name="Tartrate facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NI2tpp" name="nickel 2 transport in via permease no H " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3952 or STM2783 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CAT" name="catalase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1318 or STM4106 or STM1731 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHORM" name="chorismate mutase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2667 or STM2669 or STM1269 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pphn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DAPAL" name="2 3 diaminopropionate amonnia lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1002</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDPGALM" name="UDPgalactopyranose mutase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0719</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgalfur_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYD1pp" name="hydrogenase ubiquinone 8 2 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852 ) or ( STM1538 and STM1539 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYD2pp" name="Hydrogenase menaquinone8 2 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM1538 and STM1539 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_h2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HYD3pp" name="Hydrogenase Demethylmenaquinone 8 2 protons periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM1538 and STM1539 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ <speciesReference species="M_h2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tet_e" name="Tetrathionate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tet_e" stoichiometry="1"/>
+ <speciesReference species="M_tet_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TETtex" name="Tetrathionate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tet_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tet_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_foam_e" name="Formamide exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_foam_e" stoichiometry="1"/>
+ <speciesReference species="M_foam_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FOAMtex" name="Formamide transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_foam_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_foam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tartr__D_e" name="D tartrate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_e" stoichiometry="1"/>
+ <speciesReference species="M_tartr__D_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTRDtex" name="D Tartrate transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__D_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TARTRDtpp" name="D Tartrate facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3356</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__D_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTD" name="galactarate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3250 or STM3697 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dh4dglc_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SHSL1" name="O succinylhomoserine lyase L cysteine " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4100 or STM3624A )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_suchms_c" stoichiometry="1"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cyst__L_c" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ASPt2_3pp" name="L asparate transport via proton symport 3 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4325 or STM4301 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCFUMtpp" name="succinatefumarate antiporter periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4301 or STM0627 or STM4325 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_p" stoichiometry="1"/>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_p" stoichiometry="1"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SUCCt2_3pp" name="Succintate transport via proton symport 3 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4301 or STM4325 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ <speciesReference species="M_succ_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FUMt2_3pp" name="Fumarate transport via proton symport 3 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4325 or STM4301 or STM0627 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ <speciesReference species="M_fum_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MALt2_3pp" name="Malate transport via proton symport 3 H periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4301 or STM4325 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3"/>
+ <speciesReference species="M_mal__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="3"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALAALAD" name="D alanine D alanine dipeptidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1599</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOR1" name="Dimethyl sulfoxide reductase Menaquinol 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1499 and STM1498 and STM1497 and STM1496 ) or ( STM0964 and STM0965 and STM0966 ) or ( STM4305.S and STM4306 and STM4307 ) or ( STM2528 and STM2530 and STM2529 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_p" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dms_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMSOR2" name="Dimethyl sulfoxide reductase Demethylmenaquinol 8 " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0964 and STM0965 and STM0966 ) or ( STM4305.S and STM4306 and STM4307 ) or ( STM2528 and STM2530 and STM2529 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_p" stoichiometry="1"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dms_p" stoichiometry="1"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NAt3pp" name="sodium transport out via proton antiport cytoplasm to periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0866 or STM1771 or STM1556 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4IZ5PPH" name="4 Imidazolone 5 propanoate propionase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0787</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4iz5pp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nflgln_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NFLGLNH" name="N Formimino L glutamate formiminohydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0788</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_nflgln_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_foam_c" stoichiometry="1"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_4abz_e" name="4 Aminobenzoate exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abz_e" stoichiometry="1"/>
+ <speciesReference species="M_4abz_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ABZtex" name="4 aminobenzoate extracellular to cytosol " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abz_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abz_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feroxB_e" name="Ferrioxamine B exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxB_e" stoichiometry="1"/>
+ <speciesReference species="M_feroxB_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feroxBfe_e" name="Ferrioxamine B fe exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_e" stoichiometry="1"/>
+ <speciesReference species="M_feroxBfe_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feroxE_e" name="Ferrioxamine E exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxE_e" stoichiometry="1"/>
+ <speciesReference species="M_feroxE_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feroxEfe_e" name="Ferrioxamine E fe exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxEfe_e" stoichiometry="1"/>
+ <speciesReference species="M_feroxEfe_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feroxG_e" name="Ferrioxamine G exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxG_e" stoichiometry="1"/>
+ <speciesReference species="M_feroxG_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_feroxGfe_e" name="Ferrioxamine G fe exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxGfe_e" stoichiometry="1"/>
+ <speciesReference species="M_feroxGfe_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXBFEabcpp" name="Ferrioxamine B fe transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxBfe_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXEFEabcpp" name="Ferrioxamine E fe transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxEfe_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXGFEabcpp" name="Ferrioxamine G fe transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxGfe_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXGFEtonex" name="Ferrioxamine G fe transport via ton system extermal " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0364 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxGfe_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxGfe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXBFEtex" name="Ferrioxamine B fe transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0364</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxBfe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXEFEtex" name="Ferrioxamine E fe transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0364</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxEfe_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxEfe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXGtex" name="Ferrioxamine G transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxG_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxG_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXEtex" name="Ferrioxamine E transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxE_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxE_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXBtex" name="Ferrioxamine B transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxB_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXBtpp" name="Ferrioxamine B facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxB_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXEtpp" name="Ferrioxamine E facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxE_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxE_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXGtpp" name="Ferrioxamine G facilitated transport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxG_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxG_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_drib_e" name="deoxy D Ribose exchange" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_drib_e" stoichiometry="1"/>
+ <speciesReference species="M_drib_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DRIBtpp" name="deoxy D ribose transport via proton symport periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3792</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_drib_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_drib_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DRBK" name="deoxyribokinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3793</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_drib_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DRIBtex" name="deoxyribose transport via diffusion extracellular to periplasm " reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_drib_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_drib_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SCYSSL" name="S-sulfo-L-cysteine sulfite lyase " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ <speciesReference species="M_slcys_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_so3_c" stoichiometry="1"/>
+ <speciesReference species="M_gthox_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SLCYSS" name="O-acetyl-L-serine sulfhydrylase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2440</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_c" stoichiometry="1"/>
+ <speciesReference species="M_acser_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1"/>
+ <speciesReference species="M_slcys_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GSHPO" name="glutathione peroxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1341</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HHDDI" name="2-hydroxyhepta-2,4-diene-1,7-dioate isomerase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1101</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2oh3d_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INOSR" name="Ketoinositol reductase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM4433 or STM4425)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1"/>
+ <speciesReference species="M_inost_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_2ins_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MMSAD3" name="methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4421</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_msa_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHITPH" name="chitobiose-6-phosphate hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1316</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_chit6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1"/>
+ <speciesReference species="M_acgam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_D5KGK" name="2-Deoxy-5-Keto-D-gluconate kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4420</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_d5kg_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_d5kgp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_D5KGPA" name="2-Deoxy-5-keto-D-gluconate 6-phosphate aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_d5kgp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_msa_c" stoichiometry="1"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHEDAA" name="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1106 and STM2289)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_24dhhed_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_sucsal_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DKDID" name="D-2,3-Diketo 4-deoxy-epi-inositol dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dkdi_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_d5kg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2INSD" name="2-Inosose dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4424.S</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ins_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_dkdi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DTARTD" name="D-tartrate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2949</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NMNR" name="nmn hydrolysis" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2949</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e" stoichiometry="1"/>
+ <speciesReference species="M_nmn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rnam_e" stoichiometry="1"/>
+ <speciesReference species="M_pi_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNMK" name="ribosylnicotinamide kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4580.S</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rnam_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OACT" name="O-antigen Acetyl-Transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2232</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_udcpo4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo5_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPAT" name="Abequosyl transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2087</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpgrm_c" stoichiometry="1"/>
+ <speciesReference species="M_cdpabeq_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_udcpo4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPMT" name="mannosyl transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2086</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpgr_c" stoichiometry="1"/>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpgrm_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPRT" name="rhamnosyl transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2085</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1"/>
+ <speciesReference species="M_udcpg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpgr_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UDCPGT" name="undecaprenol-phosphate galactosephosphotransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2082</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_udpgal_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpg_c" stoichiometry="1"/>
+ <speciesReference species="M_ump_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TCBO" name="Tricarballylate oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM0690 and STM0691)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_tcb_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_acon__C_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYBt6ex" name="betaine (glycine betaine) transport into periplasm" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GLYBt6pp" name="betaine (glycine betaine) transport in/out via proton symport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHITOBex" name="Chitobiose transport into periplasm" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chitob_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chitob_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CHITOBpts" name="Chitobiose transport via PTS" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1314 and STM1312 and STM1313 and STM2431 and STM2432)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_chitob_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chit6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNAMtex" name="Nicotinamide riboside transport into periplasm" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rnam_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rnam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_RNAMtpp" name="Nicotinamide riboside transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0757</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rnam_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rnam_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAO5t3ex" name="O-antigen unit (O5) translocase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo5_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAO5t3pp" name="O-antigen unit (O5) translocase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3926</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_c" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_udcpo5_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TCBt2pp" name="tricarballylate transport in via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0689</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcb_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_tcb_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TCBt2ex" name="tricarballylate transport into periplasm" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcb_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcb_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTONR1pp" name="Trithionate Reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1383 and STM1384 and STM1385)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tton_p" stoichiometry="1"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ <speciesReference species="M_so3_p" stoichiometry="1"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTONtex" name="Trithionate transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tton_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tton_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTONR2pp" name="Trithionate Reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1383 and STM1384 and STM1385)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1"/>
+ <speciesReference species="M_tton_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_e" stoichiometry="1"/>
+ <speciesReference species="M_so3_e" stoichiometry="1"/>
+ <speciesReference species="M_q8_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="4"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_LEUt4rpp" name="L-leucine transport in via sodium symport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_p" stoichiometry="1"/>
+ <speciesReference species="M_na1_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_c" stoichiometry="1"/>
+ <speciesReference species="M_na1_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UPLA4NT" name="Undecaprenyl phosphate 4-amino-4-deoxy L-arabinose synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2298</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpLa4n_c" stoichiometry="1"/>
+ <speciesReference species="M_udcpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_uLa4n_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PSUDS" name="Pseudouridylate synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2662</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_psd5p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PFOR" name="Pyruvate flavodoxin oxidoreductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((STM0694 and STM1651) or (STM3045 and STM1651))</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_fldox_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_coa_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1"/>
+ <speciesReference species="M_fldrd_c" stoichiometry="1"/>
+ <speciesReference species="M_co2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_NNDMBRT" name="Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM2016 or STM1221)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmbzid_c" stoichiometry="1"/>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5prdmbz_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_nac_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_biomass_iRR1083" name="biomass equation from http://www.biomedcentral.com/1752-0509/3/38" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c" stoichiometry="0.028567"/>
+ <speciesReference species="M_succoa_c" stoichiometry="3e-06"/>
+ <speciesReference species="M_spmd_c" stoichiometry="0.007"/>
+ <speciesReference species="M_pe2_ST_p" stoichiometry="0.001531"/>
+ <speciesReference species="M_accoa_c" stoichiometry="5e-05"/>
+ <speciesReference species="M_val__L_c" stoichiometry="0.284577"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="0.087887"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="0.130805"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="0.040246"/>
+ <speciesReference species="M_12dgr2_ST_p" stoichiometry="0.000188"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.186332"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.154549"/>
+ <speciesReference species="M_his__L_c" stoichiometry="0.067143"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.166895"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="0.035"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="0.017197"/>
+ <speciesReference species="M_glycogen_c" stoichiometry="0.027476"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="0.256971"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="0.748399"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.026137"/>
+ <speciesReference species="M_nad_c" stoichiometry="0.00215"/>
+ <speciesReference species="M_pg2_ST_p" stoichiometry="0.00042"/>
+ <speciesReference species="M_udpg_c" stoichiometry="0.003"/>
+ <speciesReference species="M_nadh_c" stoichiometry="5e-05"/>
+ <speciesReference species="M_5mthf_c" stoichiometry="0.05"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="0.272689"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="0.349831"/>
+ <speciesReference species="M_nadph_c" stoichiometry="0.0004"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="0.256058"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="0.087361"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="0.206491"/>
+ <speciesReference species="M_colipaOA_e" stoichiometry="0.000937"/>
+ <speciesReference species="M_coa_c" stoichiometry="6e-06"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="0.311404"/>
+ <speciesReference species="M_h2o_c" stoichiometry="53.303945"/>
+ <speciesReference species="M_atp_c" stoichiometry="59.964348"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="0.374015"/>
+ <speciesReference species="M_fad_c" stoichiometry="1e-05"/>
+ <speciesReference species="M_clpn2_ST_p" stoichiometry="1.4e-05"/>
+ <speciesReference species="M_pa2_ST_p" stoichiometry="4e-06"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.00013"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="0.13874"/>
+ <speciesReference species="M_peptido_ST_p" stoichiometry="0.049404"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.026137"/>
+ <speciesReference species="M_amp_c" stoichiometry="0.001"/>
+ <speciesReference species="M_ps2_ST_p" stoichiometry="4e-06"/>
+ <speciesReference species="M_met__L_c" stoichiometry="0.104726"/>
+ <speciesReference species="M_gly_c" stoichiometry="1.498961"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="0.317225"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="0.200228"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.028567"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="59.81"/>
+ <speciesReference species="M_pi_c" stoichiometry="59.81"/>
+ <speciesReference species="M_ppi_c" stoichiometry="0.771532"/>
+ <speciesReference species="M_h_c" stoichiometry="58.266936"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_peptido_ST" name="peptido_ST formation reaction" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_peptido_ST_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_pe2_ST" name="membrane phosphatidylethanolamine composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe160_p" stoichiometry="76"/>
+ <speciesReference species="M_pe140_p" stoichiometry="14"/>
+ <speciesReference species="M_pe181_p" stoichiometry="3"/>
+ <speciesReference species="M_pe161_p" stoichiometry="4"/>
+ <speciesReference species="M_pe180_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe2_ST_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_pg2_ST" name="membrane phosphatidylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_p" stoichiometry="2"/>
+ <speciesReference species="M_pg161_p" stoichiometry="4"/>
+ <speciesReference species="M_pg160_p" stoichiometry="76"/>
+ <speciesReference species="M_pg181_p" stoichiometry="3"/>
+ <speciesReference species="M_pg140_p" stoichiometry="14"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg2_ST_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_clpn2_ST" name="membrane cardiolipin composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn181_p" stoichiometry="3"/>
+ <speciesReference species="M_clpn140_p" stoichiometry="14"/>
+ <speciesReference species="M_clpn161_p" stoichiometry="4"/>
+ <speciesReference species="M_clpn160_p" stoichiometry="76"/>
+ <speciesReference species="M_clpn180_p" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn2_ST_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_pa2_ST" name="membrane phosphatidate composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_p" stoichiometry="14"/>
+ <speciesReference species="M_pa180_p" stoichiometry="2"/>
+ <speciesReference species="M_pa161_p" stoichiometry="4"/>
+ <speciesReference species="M_pa160_p" stoichiometry="76"/>
+ <speciesReference species="M_pa181_p" stoichiometry="3"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa2_ST_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ps2_ST" name="membrane phosphatidylserine composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps180_c" stoichiometry="2"/>
+ <speciesReference species="M_ps160_c" stoichiometry="76"/>
+ <speciesReference species="M_ps181_c" stoichiometry="3"/>
+ <speciesReference species="M_ps140_c" stoichiometry="14"/>
+ <speciesReference species="M_ps161_c" stoichiometry="4"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ps2_ST_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_12dgr2_ST" name="membrane 1-2-diacylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr180_p" stoichiometry="2"/>
+ <speciesReference species="M_12dgr160_p" stoichiometry="76"/>
+ <speciesReference species="M_12dgr161_p" stoichiometry="4"/>
+ <speciesReference species="M_12dgr181_p" stoichiometry="3"/>
+ <speciesReference species="M_12dgr140_p" stoichiometry="14"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr2_ST_p" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAL_ST" name="O-antigen ligase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3713</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_colipaOA_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OA4L_ST" name="O-antigen 4 polymerase with long chain" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM2079)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_p" stoichiometry="25"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="24"/>
+ <speciesReference species="M_h_p" stoichiometry="24"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OA5L_ST" name="O-antigen 5 polymerase with long chain" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM2079)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_p" stoichiometry="25"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="24"/>
+ <speciesReference species="M_h_p" stoichiometry="24"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OA4VL_ST" name="O-antigen 4 polymerase with very long chain" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM0589)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_p" stoichiometry="100"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="99"/>
+ <speciesReference species="M_h_p" stoichiometry="99"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OA5VL_ST" name="O-antigen 5 polymerase with very long chain" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM0589)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_p" stoichiometry="100"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_p" stoichiometry="99"/>
+ <speciesReference species="M_h_p" stoichiometry="99"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAO4t3pp" name="O-antigen translocase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3926</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo4_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OAO4t3ex" name="O-antigen translocase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo4_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXtex" name="Pyridoxal transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXtpp" name="Pyridoxal transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXNtex" name="Pyrdoxine transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PYDXNtpp" name="Pyrdoxine transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HEXt2rpp" name="hexanoate transport via proton symport, reversible (periplasm)" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxa_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_hxa_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HTHRtex" name="4-hydroxy-L-threonine transport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hthr_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hthr_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HTHRtrpp" name="4-hydroxy-L-threonine transport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3243</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_4hthr_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hthr_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_4HTHRK" name="4-Hydroxy-L-threonine kinase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0003</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hthr_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phthr_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_35PDE" name="3,5-cAMP Phosphodiesterase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_camp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_amp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_UROCANH" name="urocanate hydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_urocan_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4iz5pp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AADDFT" name="4-alpha-L-fucosyltransferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3927</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4aaddg_c" stoichiometry="1"/>
+ <speciesReference species="M_unagamu_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_unagamuf_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTERHpp" name="enterobactin hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2776</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_enter_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs3_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0.0001" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4Hpp" name="salmochelin s4 hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2776</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ <speciesReference species="M_salchs4_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0.0001" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4FEHpp" name="salmochelin s4 fe3 hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2776</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2fe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0.0001" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBSZ3tex" name="23dhbsz secretion" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs3_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs3_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBSZ3FEexs" name="23dhbsz3 Fe III sequestration" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs3_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBSZ3FEtonex" name="23dhbsz3 Fe III import" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM2199 or STM0585 or STM2777) and (STM1737 and STM3159 and STM3158)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs3_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBSZ3FEabcpp" name="23dhbsz3 Fe III transport via ABC system periplasm" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_p" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEDHBZS3R1" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEDHBZS3R2" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEDHBZS3R3" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2tex" name="Salmochelin s2 secretion" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2FEexs" name="Salmochelin s2 Fe III sequestration" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2fe_e" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2FEtonex" name="Salmochelin s2 Fe III import" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2777</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2fe_e" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs2fe_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2FEabcpp" name="Salmochelin s2 Fe III transport via ABC system periplasm" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM0594 and STM0590 and STM0592 and STM0591)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs2fe_p" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2FER1" name="salmochelin s2 Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_salchs2_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2FER2" name="salmochelin s2 Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_salchs2_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2FER3" name="salmochelin s2 Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_salchs2_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS2H" name="Salmochelin s2 hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs1_c" stoichiometry="1"/>
+ <speciesReference species="M_salchsx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS1H" name="Salmochelin s1 hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs1_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1"/>
+ <speciesReference species="M_salchsx_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTERH" name="enterobactin hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBZS3H" name="23DHBS polymer hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhbzs2_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBZS2H" name="23DHBS polymer hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_23dhbzs2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTERtex" name="Enterobactin secretion" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3186</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_e" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTERGLCT1" name="Glycosyl transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2773</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ <speciesReference species="M_enter_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_entermg_c" stoichiometry="1"/>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ENTERGLCT2" name="Glycosyl transferase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2773</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_entermg_c" stoichiometry="1"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1"/>
+ <speciesReference species="M_salchs4_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXBFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxB_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXBFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXBFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXEFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_feroxE_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXEFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_feroxE_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXEFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxE_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXGFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxG_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXGFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_feroxG_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEROXGFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_feroxG_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GULNLtex" name="L-gulonate transport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_guln__L_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_guln__L_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GULNLtpp" name="L-gulonate transport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_guln__L_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_guln__L_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GULNLR" name="L-gulonate reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_guln__L_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXYLUDtex" name="1-deoxy-d-xyluose transport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dxyl_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DXYLUDtpp" name="1-deoxy-d-xyluose transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dxyl_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_MUREINLPPTP" name="L,D-transpeptidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM0837 or STM1215 or STM1375)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lpp_p" stoichiometry="1"/>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1"/>
+ <speciesReference species="M_murein_lpp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_APOLPPS" name="lpp signal peptidase - murein" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0047</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apolpp_p" stoichiometry="1"/>
+ <speciesReference species="M_lpp_sp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROLPPOATPE160" name="O-acyl Transferase - murein" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe160_c" stoichiometry="1"/>
+ <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1"/>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROLPPOATPG160" name="O-acyl Transferase - murein" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1"/>
+ <speciesReference species="M_pg160_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1"/>
+ <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_PROLPPGT160" name="Glyceryl Transferase - murein" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3002</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_c" stoichiometry="1"/>
+ <speciesReference species="M_prolpp_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1"/>
+ <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DMBZIDS" name="DMB synthase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2016</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmbzid_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_2HH24DDH1" name="2hh24dd hydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1105</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_24dhhed_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_GALCTND" name="galactonate dehydratase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3828</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_2dh3dgal_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDPGALA" name="2-dehydro-3-deoxy-6-phosphogalactonate aldolase" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dh3dgal6p_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FOAMtrpp" name="Formamide transport" reversible="true">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_foam_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_foam_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERR1" name="Fe enterobactin reduction Fe III unloading " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERR2" name="Fe enterobactin reduction Fe III unloading " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_feenter_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEENTERR3" name="Fe enterobactin reduction Fe III unloading " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ <speciesReference species="M_feenter_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4FER1" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4FER2" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="2"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4FER3" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="2"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SALCHS4FEtonex" name="Salmochelin S4 Fe III transport via ton system extracellular " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0585 or STM2199 or STM2777 ) and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ <speciesReference species="M_salchs4fe_e" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4fe_p" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HISNH4L" name="Histidine ammonia lyase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0791</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urocan_c" stoichiometry="1"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_AB6PGH" name="Arbutin 6 phosphate glucohydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3051</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbt6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_hqn_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_SARCOX" name="sarcosine oxidase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1160</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_sarcs_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1"/>
+ <speciesReference species="M_gly_c" stoichiometry="1"/>
+ <speciesReference species="M_fald_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FE3HOXabcpp" name="ferric hydroxamate transport via ABC system periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_fe3hox_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMR1" name="ferroxamine reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_c" stoichiometry="2"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_fad_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMR2" name="ferroxamine reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_FEOXAMR3" name="ferroxamine reductase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="2"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="2"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2"/>
+ <speciesReference species="M_h_c" stoichiometry="2"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DHBSH" name="2 3 dihydroxybenzoylserine hydrolase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhb_c" stoichiometry="1"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALPATE160pp" name="apolipoprotein N acyltransferase phosphatidylethanolamine periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0666 and STM1377 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_apolpp_p" stoichiometry="1"/>
+ <speciesReference species="M_pe160_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_p" stoichiometry="1"/>
+ <speciesReference species="M_lpp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_ALPATG160pp" name="apolipoprotein N acyltransferase phosphatidylglycerol periplasm " reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0666 and STM1377 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_p" stoichiometry="1"/>
+ <speciesReference species="M_apolpp_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_p" stoichiometry="1"/>
+ <speciesReference species="M_lpp_p" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_CYSLDS" name="L-cysteine desulfhydrase" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_INOSTtpp" name="myo-inositol transport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_HDCAt2pp" name="Hexadecanoate transport via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCDCAt2pp" name="Octadecanoate transport via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2392</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_OCDCEAt2pp" name="Octadecenoate transport via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2392</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_TTDCAt2pp" name="Tetradecanoate transport via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2393</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_DDCAt2pp" name="Dodecanoate transport via proton symport" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2393</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_p" stoichiometry="1"/>
+ <speciesReference species="M_h_p" stoichiometry="1"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_biomass_iRR1083_metals" name="biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succoa_c" stoichiometry="3e-06"/>
+ <speciesReference species="M_pe2_ST_p" stoichiometry="0.001531"/>
+ <speciesReference species="M_accoa_c" stoichiometry="5e-05"/>
+ <speciesReference species="M_val__L_c" stoichiometry="0.284577"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="0.087887"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="0.130805"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="0.040246"/>
+ <speciesReference species="M_zn2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_12dgr2_ST_p" stoichiometry="0.000188"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.186332"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.154549"/>
+ <speciesReference species="M_his__L_c" stoichiometry="0.067143"/>
+ <speciesReference species="M_mobd_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="0.087361"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.166895"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="0.035"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="0.017197"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.00013"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="0.256971"/>
+ <speciesReference species="M_k_c" stoichiometry="0.1776"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.026137"/>
+ <speciesReference species="M_udpg_c" stoichiometry="0.003"/>
+ <speciesReference species="M_pg2_ST_p" stoichiometry="0.00042"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="0.748399"/>
+ <speciesReference species="M_atp_c" stoichiometry="59.964348"/>
+ <speciesReference species="M_5mthf_c" stoichiometry="0.05"/>
+ <speciesReference species="M_nad_c" stoichiometry="0.00215"/>
+ <speciesReference species="M_ps2_ST_p" stoichiometry="4e-06"/>
+ <speciesReference species="M_sheme_c" stoichiometry="0.000223"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.026137"/>
+ <speciesReference species="M_cl_c" stoichiometry="0.004737"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="0.374015"/>
+ <speciesReference species="M_nadph_c" stoichiometry="0.0004"/>
+ <speciesReference species="M_glycogen_c" stoichiometry="0.027476"/>
+ <speciesReference species="M_spmd_c" stoichiometry="0.007"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="0.256058"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="0.206491"/>
+ <speciesReference species="M_colipaOA_e" stoichiometry="0.000937"/>
+ <speciesReference species="M_coa_c" stoichiometry="6e-06"/>
+ <speciesReference species="M_nadh_c" stoichiometry="5e-05"/>
+ <speciesReference species="M_cu2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_h2o_c" stoichiometry="53.303945"/>
+ <speciesReference species="M_dctp_c" stoichiometry="0.028567"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="0.349831"/>
+ <speciesReference species="M_fad_c" stoichiometry="1e-05"/>
+ <speciesReference species="M_pa2_ST_p" stoichiometry="4e-06"/>
+ <speciesReference species="M_fe2_c" stoichiometry="0.007106"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="0.13874"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="0.272689"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_peptido_ST_p" stoichiometry="0.049404"/>
+ <speciesReference species="M_clpn2_ST_p" stoichiometry="1.4e-05"/>
+ <speciesReference species="M_mn2_c" stoichiometry="0.003158"/>
+ <speciesReference species="M_amp_c" stoichiometry="0.001"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="0.311404"/>
+ <speciesReference species="M_ca2_c" stoichiometry="0.004737"/>
+ <speciesReference species="M_met__L_c" stoichiometry="0.104726"/>
+ <speciesReference species="M_gly_c" stoichiometry="1.498961"/>
+ <speciesReference species="M_mg2_c" stoichiometry="0.007895"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="0.317225"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="0.200228"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.028567"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="59.81"/>
+ <speciesReference species="M_adp_c" stoichiometry="59.81"/>
+ <speciesReference species="M_ppi_c" stoichiometry="0.771532"/>
+ <speciesReference species="M_h_c" stoichiometry="58.266936"/>
+ </listOfProducts>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="1" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_dxyl_e" name="dxyl_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl_e" stoichiometry="1"/>
+ <speciesReference species="M_dxyl_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_salchs2fe_e" name="salchs2fe_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2fe_e" stoichiometry="1"/>
+ <speciesReference species="M_salchs2fe_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_rnam_e" name="rnam_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rnam_e" stoichiometry="1"/>
+ <speciesReference species="M_rnam_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_colipaOA_e" name="colipaOA_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipaOA_e" stoichiometry="1"/>
+ <speciesReference species="M_colipaOA_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udcpo4_e" name="udcpo4_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_e" stoichiometry="1"/>
+ <speciesReference species="M_udcpo4_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tcb_e" name="tcb_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcb_e" stoichiometry="1"/>
+ <speciesReference species="M_tcb_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_fe3dhbzs3_e" name="fe3dhbzs3_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1"/>
+ <speciesReference species="M_fe3dhbzs3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_23dhbzs3_e" name="23dhbzs3_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs3_e" stoichiometry="1"/>
+ <speciesReference species="M_23dhbzs3_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_guln__L_e" name="guln__L_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_guln__L_e" stoichiometry="1"/>
+ <speciesReference species="M_guln__L_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_udcpo5_e" name="udcpo5_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_e" stoichiometry="1"/>
+ <speciesReference species="M_udcpo5_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_4hthr_e" name="4hthr_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hthr_e" stoichiometry="1"/>
+ <speciesReference species="M_4hthr_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_salchs2_e" name="salchs2_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2_e" stoichiometry="1"/>
+ <speciesReference species="M_salchs2_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ <reaction id="R_EX_tton_e" name="tton_e Boundary Reaction" reversible="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tton_e" stoichiometry="1"/>
+ <speciesReference species="M_tton_e_boundary" stoichiometry="1"/>
+ </listOfReactants>
+ <kineticLaw>
+ <math xmlns="http://www.w3.org/1998/Math/MathML">
+ <ci> FLUX_VALUE </ci>
+ </math>
+ <listOfParameters>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
+ <parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
+ </listOfParameters>
+ </kineticLaw>
+ </reaction>
+ </listOfReactions>
+ </model>
+</sbml>
diff --git a/cobra/test/data/salmonella_fbc.xml b/cobra/test/data/salmonella_fbc.xml
new file mode 100644
index 0000000..2116d02
--- /dev/null
+++ b/cobra/test/data/salmonella_fbc.xml
@@ -0,0 +1,77257 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version1" level="3" version="1" fbc:required="false">
+ <model id="Salmonella_consensus_build_1" substanceUnits="substance" timeUnits="dimensionless" volumeUnits="volume" areaUnits="area" lengthUnits="metre" extentUnits="substance">
+ <annotation>
+ <listOfGeneAssociations xmlns="http://www.sbml.org/sbml/level3/version1/fbc/version1">
+ <geneAssociation id="ga_1" reaction="R_12PPDRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_2" reaction="R_12PPDRtpp">
+ <gene reference="STM2037"/>
+ </geneAssociation>
+ <geneAssociation id="ga_3" reaction="R_12PPDStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_4" reaction="R_12PPDStpp">
+ <gene reference="STM2037"/>
+ </geneAssociation>
+ <geneAssociation id="ga_5" reaction="R_14GLUCANabcpp">
+ <and>
+ <gene reference="STM4229"/>
+ <gene reference="STM4228"/>
+ <gene reference="STM4227"/>
+ <gene reference="STM4230"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_6" reaction="R_14GLUCANtexi">
+ <gene reference="STM4231"/>
+ </geneAssociation>
+ <geneAssociation id="ga_7" reaction="R_23CAMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_8" reaction="R_23CCMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_9" reaction="R_23CGMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_10" reaction="R_23CUMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_11" reaction="R_23DAPPAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_12" reaction="R_23PDE2pp">
+ <gene reference="STM4403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_13" reaction="R_23PDE4pp">
+ <gene reference="STM4403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_14" reaction="R_23PDE7pp">
+ <gene reference="STM4403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_15" reaction="R_23PDE9pp">
+ <gene reference="STM4403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_16" reaction="R_26DAHtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_17" reaction="R_2AGPA120tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_18" reaction="R_2AGPA140tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_19" reaction="R_2AGPA141tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_20" reaction="R_2AGPA160tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_21" reaction="R_2AGPA161tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_22" reaction="R_2AGPA180tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_23" reaction="R_2AGPA181tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_24" reaction="R_2AGPE120tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_25" reaction="R_2AGPE140tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_26" reaction="R_2AGPE141tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_27" reaction="R_2AGPE160tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_28" reaction="R_2AGPE161tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_29" reaction="R_2AGPE180tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_30" reaction="R_2AGPE181tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_31" reaction="R_2AGPEAT120">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_32" reaction="R_2AGPEAT140">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_33" reaction="R_2AGPEAT141">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_34" reaction="R_2AGPEAT160">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_35" reaction="R_2AGPEAT161">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_36" reaction="R_2AGPEAT180">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_37" reaction="R_2AGPEAT181">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_38" reaction="R_2AGPG120tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_39" reaction="R_2AGPG140tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_40" reaction="R_2AGPG141tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_41" reaction="R_2AGPG160tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_42" reaction="R_2AGPG161tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_43" reaction="R_2AGPG180tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_44" reaction="R_2AGPG181tipp">
+ <gene reference="STM3009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_45" reaction="R_2AGPGAT120">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_46" reaction="R_2AGPGAT140">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_47" reaction="R_2AGPGAT141">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_48" reaction="R_2AGPGAT160">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_49" reaction="R_2AGPGAT161">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_50" reaction="R_2AGPGAT180">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_51" reaction="R_2AGPGAT181">
+ <gene reference="STM3010"/>
+ </geneAssociation>
+ <geneAssociation id="ga_52" reaction="R_2DGLCNRx">
+ <gene reference="STM3646"/>
+ </geneAssociation>
+ <geneAssociation id="ga_53" reaction="R_2DGLCNRy">
+ <gene reference="STM3646"/>
+ </geneAssociation>
+ <geneAssociation id="ga_54" reaction="R_2DGULRx">
+ <gene reference="STM3646"/>
+ </geneAssociation>
+ <geneAssociation id="ga_55" reaction="R_2DGULRy">
+ <gene reference="STM3646"/>
+ </geneAssociation>
+ <geneAssociation id="ga_56" reaction="R_2MAHMP">
+ <or>
+ <gene reference="STM0457"/>
+ <gene reference="STM1235"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_57" reaction="R_34dhpactex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_58" reaction="R_3AMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_59" reaction="R_3CMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_60" reaction="R_3GMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0999"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_61" reaction="R_3HAD100">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_62" reaction="R_3HAD120">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_63" reaction="R_3HAD121">
+ <or>
+ <gene reference="STM0227"/>
+ <gene reference="STM1067"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_64" reaction="R_3HAD140">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_65" reaction="R_3HAD141">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_66" reaction="R_3HAD160">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_67" reaction="R_3HAD161">
+ <or>
+ <gene reference="STM0227"/>
+ <gene reference="STM1067"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_68" reaction="R_3HAD180">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_69" reaction="R_3HAD181">
+ <or>
+ <gene reference="STM0227"/>
+ <gene reference="STM1067"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_70" reaction="R_3HAD40">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_71" reaction="R_3HAD60">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_72" reaction="R_3HAD80">
+ <or>
+ <gene reference="STM1067"/>
+ <gene reference="STM0227"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_73" reaction="R_3KGK">
+ <gene reference="STM3674"/>
+ </geneAssociation>
+ <geneAssociation id="ga_74" reaction="R_3NTD2pp">
+ <gene reference="STM4403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_75" reaction="R_3NTD4pp">
+ <or>
+ <gene reference="STM4403"/>
+ <gene reference="STM2927"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_76" reaction="R_3NTD7pp">
+ <or>
+ <gene reference="STM4403"/>
+ <gene reference="STM2927"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_77" reaction="R_3NTD9pp">
+ <gene reference="STM4403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_78" reaction="R_3OAR100">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_79" reaction="R_3OAR120">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_80" reaction="R_3OAR121">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_81" reaction="R_3OAR140">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_82" reaction="R_3OAR141">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_83" reaction="R_3OAR160">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_84" reaction="R_3OAR161">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_85" reaction="R_3OAR180">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_86" reaction="R_3OAR181">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_87" reaction="R_3OAR40">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_88" reaction="R_3OAR60">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_89" reaction="R_3OAR80">
+ <gene reference="STM1195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_90" reaction="R_3OAS100">
+ <or>
+ <gene reference="STM2378"/>
+ <gene reference="STM1197"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_91" reaction="R_3OAS120">
+ <or>
+ <gene reference="STM2378"/>
+ <gene reference="STM1197"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_92" reaction="R_3OAS121">
+ <gene reference="STM2378"/>
+ </geneAssociation>
+ <geneAssociation id="ga_93" reaction="R_3OAS140">
+ <or>
+ <gene reference="STM2378"/>
+ <gene reference="STM1197"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_94" reaction="R_3OAS141">
+ <gene reference="STM2378"/>
+ </geneAssociation>
+ <geneAssociation id="ga_95" reaction="R_3OAS160">
+ <or>
+ <gene reference="STM2378"/>
+ <gene reference="STM1197"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_96" reaction="R_3OAS161">
+ <gene reference="STM2378"/>
+ </geneAssociation>
+ <geneAssociation id="ga_97" reaction="R_3OAS180">
+ <or>
+ <gene reference="STM1197"/>
+ <gene reference="STM2378"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_98" reaction="R_3OAS181">
+ <gene reference="STM1197"/>
+ </geneAssociation>
+ <geneAssociation id="ga_99" reaction="R_3OAS60">
+ <or>
+ <gene reference="STM2378"/>
+ <gene reference="STM1197"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_100" reaction="R_3OAS80">
+ <or>
+ <gene reference="STM2378"/>
+ <gene reference="STM1197"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_101" reaction="R_3PEPTabcpp">
+ <and>
+ <gene reference="STM1679"/>
+ <gene reference="STM1745"/>
+ <gene reference="STM1744"/>
+ <gene reference="STM1743"/>
+ <gene reference="STM1742"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_102" reaction="R_3PEPTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_103" reaction="R_3UMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_104" reaction="R_4HOXPACDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_105" reaction="R_4PCP">
+ <gene reference="STM1800"/>
+ </geneAssociation>
+ <geneAssociation id="ga_106" reaction="R_4PEPTabcpp">
+ <and>
+ <gene reference="STM1746.S"/>
+ <gene reference="STM1745"/>
+ <gene reference="STM1744"/>
+ <gene reference="STM1743"/>
+ <gene reference="STM1742"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_107" reaction="R_4PEPTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_108" reaction="R_5DGLCNR">
+ <gene reference="STM4483"/>
+ </geneAssociation>
+ <geneAssociation id="ga_109" reaction="R_5DGLCNt2rpp">
+ <gene reference="STM4482"/>
+ </geneAssociation>
+ <geneAssociation id="ga_110" reaction="R_5DGLCNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_111" reaction="R_5DOAN">
+ <gene reference="STM0207"/>
+ </geneAssociation>
+ <geneAssociation id="ga_112" reaction="R_A5PISO">
+ <or>
+ <gene reference="STM2838.S"/>
+ <gene reference="STM3315"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_113" reaction="R_AACPS1">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_114" reaction="R_AACPS2">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_115" reaction="R_AACPS3">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_116" reaction="R_AACPS4">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_117" reaction="R_AACPS5">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_118" reaction="R_AACPS6">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_119" reaction="R_AACPS7">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_120" reaction="R_AACPS8">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_121" reaction="R_AACPS9">
+ <and>
+ <gene reference="STM3010"/>
+ <gene reference="STM1196"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_122" reaction="R_AAMYL">
+ <gene reference="STM1963"/>
+ </geneAssociation>
+ <geneAssociation id="ga_123" reaction="R_AAMYLpp">
+ <gene reference="STM3664"/>
+ </geneAssociation>
+ <geneAssociation id="ga_124" reaction="R_ABTA">
+ <gene reference="STM2792"/>
+ </geneAssociation>
+ <geneAssociation id="ga_125" reaction="R_ABUTD">
+ <gene reference="STM1597"/>
+ </geneAssociation>
+ <geneAssociation id="ga_126" reaction="R_ABUTt2pp">
+ <gene reference="STM2793"/>
+ </geneAssociation>
+ <geneAssociation id="ga_127" reaction="R_ABUTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_128" reaction="R_ACACtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_129" reaction="R_ACALD">
+ <or>
+ <gene reference="STM1749"/>
+ <gene reference="STM2463"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_130" reaction="R_ACALDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_131" reaction="R_ACALDtpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_132" reaction="R_ACBIPGT">
+ <gene reference="STM2018"/>
+ </geneAssociation>
+ <geneAssociation id="ga_133" reaction="R_ACCOAC">
+ <and>
+ <gene reference="STM0232"/>
+ <gene reference="STM2366"/>
+ <gene reference="STM3379"/>
+ <gene reference="STM3380"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_134" reaction="R_ACCOAL">
+ <or>
+ <gene reference="STM0371"/>
+ <gene reference="STM4275"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_135" reaction="R_ACGAL1Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_136" reaction="R_ACGALtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_137" reaction="R_ACGAM1Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_138" reaction="R_ACGAMK">
+ <gene reference="STM1220"/>
+ </geneAssociation>
+ <geneAssociation id="ga_139" reaction="R_ACGAMT">
+ <gene reference="STM3918"/>
+ </geneAssociation>
+ <geneAssociation id="ga_140" reaction="R_ACGAptspp">
+ <or>
+ <and>
+ <gene reference="STM2433"/>
+ <gene reference="STM1203"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ <and>
+ <gene reference="STM0685"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_141" reaction="R_ACGAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_142" reaction="R_ACGK">
+ <gene reference="STM4122"/>
+ </geneAssociation>
+ <geneAssociation id="ga_143" reaction="R_ACGS">
+ <gene reference="STM2992"/>
+ </geneAssociation>
+ <geneAssociation id="ga_144" reaction="R_ACHBS">
+ <or>
+ <and>
+ <gene reference="STM3795"/>
+ <gene reference="STM3796"/>
+ </and>
+ <and>
+ <gene reference="STM3901"/>
+ <gene reference="STM3902"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_145" reaction="R_ACKr">
+ <or>
+ <gene reference="STM3242"/>
+ <gene reference="STM2337"/>
+ <gene reference="STM1883"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_146" reaction="R_ACLS">
+ <or>
+ <and>
+ <gene reference="STM3795"/>
+ <gene reference="STM3796"/>
+ </and>
+ <and>
+ <gene reference="STM3901"/>
+ <gene reference="STM3902"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_147" reaction="R_ACMAMUT">
+ <gene reference="STM3929"/>
+ </geneAssociation>
+ <geneAssociation id="ga_148" reaction="R_ACMANAptspp">
+ <and>
+ <gene reference="STM1830"/>
+ <gene reference="STM1831"/>
+ <gene reference="STM1832"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_149" reaction="R_ACMANAtex">
+ <or>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_150" reaction="R_ACMUMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_151" reaction="R_ACNAMt2pp">
+ <gene reference="STM3338"/>
+ </geneAssociation>
+ <geneAssociation id="ga_152" reaction="R_ACNAMtex">
+ <or>
+ <gene reference="STM0999"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_153" reaction="R_ACNML">
+ <gene reference="STM3339"/>
+ </geneAssociation>
+ <geneAssociation id="ga_154" reaction="R_ACOAD1f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_155" reaction="R_ACOAD2f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_156" reaction="R_ACOAD3f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_157" reaction="R_ACOAD4f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_158" reaction="R_ACOAD5f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_159" reaction="R_ACOAD6f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_160" reaction="R_ACOAD7f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_161" reaction="R_ACOAD8f">
+ <gene reference="STM0309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_162" reaction="R_ACOATA">
+ <and>
+ <gene reference="STM1196"/>
+ <gene reference="STM1193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_163" reaction="R_ACODA">
+ <gene reference="STM4120"/>
+ </geneAssociation>
+ <geneAssociation id="ga_164" reaction="R_ACONIs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_165" reaction="R_ACONTa">
+ <or>
+ <gene reference="STM0158"/>
+ <gene reference="STM1712"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_166" reaction="R_ACONTb">
+ <or>
+ <gene reference="STM0158"/>
+ <gene reference="STM1712"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_167" reaction="R_ACOTA">
+ <or>
+ <gene reference="STM3468"/>
+ <gene reference="STM1303"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_168" reaction="R_ACPS1">
+ <or>
+ <gene reference="STM2577"/>
+ <gene reference="STM3583"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_169" reaction="R_ACS">
+ <gene reference="STM4275"/>
+ </geneAssociation>
+ <geneAssociation id="ga_170" reaction="R_ACSERtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_171" reaction="R_ACSERtpp">
+ <or>
+ <gene reference="STM2645"/>
+ <gene reference="STM1517"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_172" reaction="R_ACt4pp">
+ <gene reference="STM4273"/>
+ </geneAssociation>
+ <geneAssociation id="ga_173" reaction="R_ACtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_174" reaction="R_ADA">
+ <gene reference="STM1463"/>
+ </geneAssociation>
+ <geneAssociation id="ga_175" reaction="R_ADCL">
+ <gene reference="STM1198"/>
+ </geneAssociation>
+ <geneAssociation id="ga_176" reaction="R_ADCS">
+ <and>
+ <gene reference="STM3469"/>
+ <gene reference="STM1824"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_177" reaction="R_ADEt2rpp">
+ <gene reference="STM3747"/>
+ </geneAssociation>
+ <geneAssociation id="ga_178" reaction="R_ADEtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_179" reaction="R_ADK1">
+ <gene reference="STM0488"/>
+ </geneAssociation>
+ <geneAssociation id="ga_180" reaction="R_ADK3">
+ <gene reference="STM0488"/>
+ </geneAssociation>
+ <geneAssociation id="ga_181" reaction="R_ADK4">
+ <gene reference="STM0488"/>
+ </geneAssociation>
+ <geneAssociation id="ga_182" reaction="R_ADMDC">
+ <gene reference="STM0165"/>
+ </geneAssociation>
+ <geneAssociation id="ga_183" reaction="R_ADNCYC">
+ <gene reference="STM3939"/>
+ </geneAssociation>
+ <geneAssociation id="ga_184" reaction="R_ADNK1">
+ <gene reference="STM0488"/>
+ </geneAssociation>
+ <geneAssociation id="ga_185" reaction="R_ADNUC">
+ <gene reference="STM0051"/>
+ </geneAssociation>
+ <geneAssociation id="ga_186" reaction="R_ADNt2pp">
+ <or>
+ <gene reference="STM3113"/>
+ <gene reference="STM2409"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_187" reaction="R_ADNt2rpp">
+ <gene reference="STM2421"/>
+ </geneAssociation>
+ <geneAssociation id="ga_188" reaction="R_ADNtex">
+ <gene reference="STM0413"/>
+ </geneAssociation>
+ <geneAssociation id="ga_189" reaction="R_ADOCBLabcpp">
+ <and>
+ <gene reference="STM1340"/>
+ <gene reference="STM1342"/>
+ <gene reference="STM0206"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_190" reaction="R_ADOCBLtonex">
+ <and>
+ <gene reference="STM4130"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_191" reaction="R_ADPRDP">
+ <gene reference="STM3185"/>
+ </geneAssociation>
+ <geneAssociation id="ga_192" reaction="R_ADPT">
+ <gene reference="STM0483"/>
+ </geneAssociation>
+ <geneAssociation id="ga_193" reaction="R_ADSK">
+ <gene reference="STM2933"/>
+ </geneAssociation>
+ <geneAssociation id="ga_194" reaction="R_ADSL1r">
+ <gene reference="STM1232"/>
+ </geneAssociation>
+ <geneAssociation id="ga_195" reaction="R_ADSL2r">
+ <gene reference="STM1232"/>
+ </geneAssociation>
+ <geneAssociation id="ga_196" reaction="R_ADSS">
+ <gene reference="STM4366"/>
+ </geneAssociation>
+ <geneAssociation id="ga_197" reaction="R_AGDC">
+ <gene reference="STM0683"/>
+ </geneAssociation>
+ <geneAssociation id="ga_198" reaction="R_AGM3PA">
+ <gene reference="STM0146"/>
+ </geneAssociation>
+ <geneAssociation id="ga_199" reaction="R_AGM3PApp">
+ <or>
+ <gene reference="STM4358"/>
+ <gene reference="STM2450"/>
+ <gene reference="STM2991"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_200" reaction="R_AGM3PH">
+ <gene reference="STM1209"/>
+ </geneAssociation>
+ <geneAssociation id="ga_201" reaction="R_AGM3Pt2pp">
+ <gene reference="STM0444"/>
+ </geneAssociation>
+ <geneAssociation id="ga_202" reaction="R_AGM4PA">
+ <gene reference="STM0146"/>
+ </geneAssociation>
+ <geneAssociation id="ga_203" reaction="R_AGM4PApp">
+ <or>
+ <gene reference="STM2991"/>
+ <gene reference="STM4358"/>
+ <gene reference="STM2450"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_204" reaction="R_AGM4PCP">
+ <gene reference="STM1800"/>
+ </geneAssociation>
+ <geneAssociation id="ga_205" reaction="R_AGM4PH">
+ <gene reference="STM1209"/>
+ </geneAssociation>
+ <geneAssociation id="ga_206" reaction="R_AGM4Pt2pp">
+ <gene reference="STM0444"/>
+ </geneAssociation>
+ <geneAssociation id="ga_207" reaction="R_AGMH">
+ <gene reference="STM1209"/>
+ </geneAssociation>
+ <geneAssociation id="ga_208" reaction="R_AGMHE">
+ <gene reference="STM3710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_209" reaction="R_AGMT">
+ <gene reference="STM3078"/>
+ </geneAssociation>
+ <geneAssociation id="ga_210" reaction="R_AGMt2pp">
+ <gene reference="STM0444"/>
+ </geneAssociation>
+ <geneAssociation id="ga_211" reaction="R_AGMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_212" reaction="R_AGPAT120">
+ <gene reference="STM3173"/>
+ </geneAssociation>
+ <geneAssociation id="ga_213" reaction="R_AGPAT140">
+ <gene reference="STM3173"/>
+ </geneAssociation>
+ <geneAssociation id="ga_214" reaction="R_AGPAT141">
+ <gene reference="STM3173"/>
+ </geneAssociation>
+ <geneAssociation id="ga_215" reaction="R_AGPAT160">
+ <gene reference="STM3173"/>
+ </geneAssociation>
+ <geneAssociation id="ga_216" reaction="R_AGPAT161">
+ <gene reference="STM3173"/>
+ </geneAssociation>
+ <geneAssociation id="ga_217" reaction="R_AGPAT180">
+ <gene reference="STM3173"/>
+ </geneAssociation>
+ <geneAssociation id="ga_218" reaction="R_AGPAT181">
+ <gene reference="STM3173"/>
+ </geneAssociation>
+ <geneAssociation id="ga_219" reaction="R_AGPR">
+ <gene reference="STM4121"/>
+ </geneAssociation>
+ <geneAssociation id="ga_220" reaction="R_AHCYSNS">
+ <gene reference="STM0207"/>
+ </geneAssociation>
+ <geneAssociation id="ga_221" reaction="R_AICART">
+ <gene reference="STM4176"/>
+ </geneAssociation>
+ <geneAssociation id="ga_222" reaction="R_AIRC2">
+ <gene reference="STM0533"/>
+ </geneAssociation>
+ <geneAssociation id="ga_223" reaction="R_AIRC3">
+ <gene reference="STM0534"/>
+ </geneAssociation>
+ <geneAssociation id="ga_224" reaction="R_AKGDH">
+ <and>
+ <gene reference="STM0154"/>
+ <gene reference="STM0736"/>
+ <gene reference="STM0737"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_225" reaction="R_AKGt2rpp">
+ <gene reference="STM2654"/>
+ </geneAssociation>
+ <geneAssociation id="ga_226" reaction="R_AKGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_227" reaction="R_ALAALAabcpp">
+ <and>
+ <gene reference="STM3630"/>
+ <gene reference="STM3629"/>
+ <gene reference="STM3628"/>
+ <gene reference="STM3627"/>
+ <gene reference="STM3626"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_228" reaction="R_ALAALAr">
+ <or>
+ <gene reference="STM0380"/>
+ <gene reference="STM0130"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_229" reaction="R_ALAALAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_230" reaction="R_ALAGLUE">
+ <gene reference="STM1681"/>
+ </geneAssociation>
+ <geneAssociation id="ga_231" reaction="R_ALAR">
+ <or>
+ <gene reference="STM4247"/>
+ <gene reference="STM1802"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_232" reaction="R_ALATA_D2">
+ <or>
+ <gene reference="STM2555"/>
+ <gene reference="STM0934"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_233" reaction="R_ALATA_L2">
+ <or>
+ <gene reference="STM0934"/>
+ <gene reference="STM2555"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_234" reaction="R_ALATRS">
+ <gene reference="STM2827"/>
+ </geneAssociation>
+ <geneAssociation id="ga_235" reaction="R_ALAabcpp">
+ <and>
+ <gene reference="STM3560"/>
+ <gene reference="STM3561"/>
+ <gene reference="STM3563"/>
+ <gene reference="STM3567"/>
+ <gene reference="STM3562"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_236" reaction="R_ALAt2pp">
+ <gene reference="STM4398"/>
+ </geneAssociation>
+ <geneAssociation id="ga_237" reaction="R_ALAt4pp">
+ <gene reference="STM0006"/>
+ </geneAssociation>
+ <geneAssociation id="ga_238" reaction="R_ALAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_239" reaction="R_ALDD2y">
+ <gene reference="STM3680"/>
+ </geneAssociation>
+ <geneAssociation id="ga_240" reaction="R_ALDD3y">
+ <gene reference="STM3680"/>
+ </geneAssociation>
+ <geneAssociation id="ga_241" reaction="R_ALLTAMH">
+ <gene reference="STM0527"/>
+ </geneAssociation>
+ <geneAssociation id="ga_242" reaction="R_ALLTN">
+ <gene reference="STM0523"/>
+ </geneAssociation>
+ <geneAssociation id="ga_243" reaction="R_ALLTNt2rpp">
+ <gene reference="STM0522"/>
+ </geneAssociation>
+ <geneAssociation id="ga_244" reaction="R_ALLTNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_245" reaction="R_ALLtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_246" reaction="R_ALR2">
+ <or>
+ <gene reference="STM3165"/>
+ <gene reference="STM0255"/>
+ <gene reference="STM1288"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_247" reaction="R_ALR4x">
+ <gene reference="STM4108"/>
+ </geneAssociation>
+ <geneAssociation id="ga_248" reaction="R_AM3PA">
+ <gene reference="STM0146"/>
+ </geneAssociation>
+ <geneAssociation id="ga_249" reaction="R_AM4PA">
+ <gene reference="STM0146"/>
+ </geneAssociation>
+ <geneAssociation id="ga_250" reaction="R_AM4PCP">
+ <gene reference="STM1800"/>
+ </geneAssociation>
+ <geneAssociation id="ga_251" reaction="R_AMALT1">
+ <gene reference="STM3513"/>
+ </geneAssociation>
+ <geneAssociation id="ga_252" reaction="R_AMALT2">
+ <gene reference="STM3513"/>
+ </geneAssociation>
+ <geneAssociation id="ga_253" reaction="R_AMALT3">
+ <gene reference="STM3513"/>
+ </geneAssociation>
+ <geneAssociation id="ga_254" reaction="R_AMALT4">
+ <gene reference="STM3513"/>
+ </geneAssociation>
+ <geneAssociation id="ga_255" reaction="R_AMANAPEr">
+ <gene reference="STM3337"/>
+ </geneAssociation>
+ <geneAssociation id="ga_256" reaction="R_AMANK">
+ <gene reference="STM3336"/>
+ </geneAssociation>
+ <geneAssociation id="ga_257" reaction="R_AMAOTr">
+ <gene reference="STM0793"/>
+ </geneAssociation>
+ <geneAssociation id="ga_258" reaction="R_AMMQLT8">
+ <gene reference="STM3970"/>
+ </geneAssociation>
+ <geneAssociation id="ga_259" reaction="R_AMPMS2">
+ <gene reference="STM4164"/>
+ </geneAssociation>
+ <geneAssociation id="ga_260" reaction="R_AMPN">
+ <gene reference="STM2009"/>
+ </geneAssociation>
+ <geneAssociation id="ga_261" reaction="R_AMPTASECG">
+ <or>
+ <gene reference="STM1057"/>
+ <gene reference="STM0316"/>
+ <gene reference="STM4477"/>
+ <gene reference="STM2536"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_262" reaction="R_AMPTASEPG">
+ <or>
+ <gene reference="STM2536"/>
+ <gene reference="STM4477"/>
+ <gene reference="STM0316"/>
+ <gene reference="STM1057"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_263" reaction="R_AMPtex">
+ <or>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_264" reaction="R_ANHGMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_265" reaction="R_ANHMK">
+ <gene reference="STM1446"/>
+ </geneAssociation>
+ <geneAssociation id="ga_266" reaction="R_ANPRT">
+ <gene reference="STM1724"/>
+ </geneAssociation>
+ <geneAssociation id="ga_267" reaction="R_ANS">
+ <and>
+ <gene reference="STM1724"/>
+ <gene reference="STM1723"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_268" reaction="R_AOBUTDs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_269" reaction="R_AOXSr">
+ <gene reference="STM0795"/>
+ </geneAssociation>
+ <geneAssociation id="ga_270" reaction="R_AP4AH">
+ <gene reference="STM0088"/>
+ </geneAssociation>
+ <geneAssociation id="ga_271" reaction="R_AP5AH">
+ <gene reference="STM0088"/>
+ </geneAssociation>
+ <geneAssociation id="ga_272" reaction="R_APRAUR">
+ <gene reference="STM0416"/>
+ </geneAssociation>
+ <geneAssociation id="ga_273" reaction="R_ARAI">
+ <gene reference="STM0102"/>
+ </geneAssociation>
+ <geneAssociation id="ga_274" reaction="R_ARBTNabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_275" reaction="R_ARBTNexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_276" reaction="R_ARBt2rpp">
+ <gene reference="STM3016"/>
+ </geneAssociation>
+ <geneAssociation id="ga_277" reaction="R_ARBt3ipp">
+ <gene reference="STM1522"/>
+ </geneAssociation>
+ <geneAssociation id="ga_278" reaction="R_ARBtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_279" reaction="R_ARGAGMt7pp">
+ <gene reference="STM4294"/>
+ </geneAssociation>
+ <geneAssociation id="ga_280" reaction="R_ARGDC">
+ <or>
+ <gene reference="STM4296"/>
+ <gene reference="STM3086"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_281" reaction="R_ARGDCpp">
+ <gene reference="STM3086"/>
+ </geneAssociation>
+ <geneAssociation id="ga_282" reaction="R_ARGORNt7pp">
+ <gene reference="STM1477"/>
+ </geneAssociation>
+ <geneAssociation id="ga_283" reaction="R_ARGSL">
+ <gene reference="STM4123"/>
+ </geneAssociation>
+ <geneAssociation id="ga_284" reaction="R_ARGSS">
+ <gene reference="STM3290.S"/>
+ </geneAssociation>
+ <geneAssociation id="ga_285" reaction="R_ARGTRS">
+ <gene reference="STM1909"/>
+ </geneAssociation>
+ <geneAssociation id="ga_286" reaction="R_ARGabcpp">
+ <or>
+ <and>
+ <gene reference="STM2355"/>
+ <gene reference="STM2352"/>
+ <gene reference="STM2351"/>
+ <gene reference="STM2353"/>
+ </and>
+ <and>
+ <gene reference="STM0890"/>
+ <gene reference="STM0887"/>
+ <gene reference="STM0888"/>
+ <gene reference="STM0891"/>
+ <gene reference="STM0889"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_287" reaction="R_ARGt3pp">
+ <gene reference="STM3066"/>
+ </geneAssociation>
+ <geneAssociation id="ga_288" reaction="R_ARGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_289" reaction="R_ASAD">
+ <gene reference="STM3539"/>
+ </geneAssociation>
+ <geneAssociation id="ga_290" reaction="R_ASCBPL">
+ <gene reference="STM4382"/>
+ </geneAssociation>
+ <geneAssociation id="ga_291" reaction="R_ASCBptspp">
+ <and>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ <gene reference="STM4385"/>
+ <gene reference="STM4384"/>
+ <gene reference="STM4383.S"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_292" reaction="R_ASCBtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_293" reaction="R_ASNN">
+ <or>
+ <gene reference="STM1294"/>
+ <gene reference="STM0847"/>
+ <gene reference="STM3598"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_294" reaction="R_ASNNpp">
+ <gene reference="STM3106"/>
+ </geneAssociation>
+ <geneAssociation id="ga_295" reaction="R_ASNS1">
+ <gene reference="STM0680"/>
+ </geneAssociation>
+ <geneAssociation id="ga_296" reaction="R_ASNS2">
+ <gene reference="STM3877"/>
+ </geneAssociation>
+ <geneAssociation id="ga_297" reaction="R_ASNTRS">
+ <gene reference="STM1000"/>
+ </geneAssociation>
+ <geneAssociation id="ga_298" reaction="R_ASNt2rpp">
+ <gene reference="STM1584"/>
+ </geneAssociation>
+ <geneAssociation id="ga_299" reaction="R_ASNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_300" reaction="R_ASO3tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_301" reaction="R_ASP1DC">
+ <gene reference="STM0180"/>
+ </geneAssociation>
+ <geneAssociation id="ga_302" reaction="R_ASPCT">
+ <and>
+ <gene reference="STM4459"/>
+ <gene reference="STM4460"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_303" reaction="R_ASPK">
+ <or>
+ <gene reference="STM0002"/>
+ <gene reference="STM4101"/>
+ <gene reference="STM4220"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_304" reaction="R_ASPO3">
+ <gene reference="STM2641"/>
+ </geneAssociation>
+ <geneAssociation id="ga_305" reaction="R_ASPO4">
+ <gene reference="STM2641"/>
+ </geneAssociation>
+ <geneAssociation id="ga_306" reaction="R_ASPO5">
+ <gene reference="STM2641"/>
+ </geneAssociation>
+ <geneAssociation id="ga_307" reaction="R_ASPO6">
+ <gene reference="STM2641"/>
+ </geneAssociation>
+ <geneAssociation id="ga_308" reaction="R_ASPT">
+ <gene reference="STM4326"/>
+ </geneAssociation>
+ <geneAssociation id="ga_309" reaction="R_ASPTA">
+ <gene reference="STM0998"/>
+ </geneAssociation>
+ <geneAssociation id="ga_310" reaction="R_ASPTRS">
+ <gene reference="STM1901"/>
+ </geneAssociation>
+ <geneAssociation id="ga_311" reaction="R_ASPabcpp">
+ <and>
+ <gene reference="STM0665"/>
+ <gene reference="STM0664"/>
+ <gene reference="STM0663"/>
+ <gene reference="STM0662"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_312" reaction="R_ASPt2_2pp">
+ <gene reference="STM3614"/>
+ </geneAssociation>
+ <geneAssociation id="ga_313" reaction="R_ASPt2pp">
+ <gene reference="STM4283"/>
+ </geneAssociation>
+ <geneAssociation id="ga_314" reaction="R_ASPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_315" reaction="R_AST">
+ <gene reference="STM1304"/>
+ </geneAssociation>
+ <geneAssociation id="ga_316" reaction="R_ATHRDHr">
+ <gene reference="STM1511"/>
+ </geneAssociation>
+ <geneAssociation id="ga_317" reaction="R_ATPHs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_318" reaction="R_ATPPRT">
+ <gene reference="STM2071"/>
+ </geneAssociation>
+ <geneAssociation id="ga_319" reaction="R_ATPS4rpp">
+ <or>
+ <and>
+ <gene reference="STM3869"/>
+ <gene reference="STM3870"/>
+ <gene reference="STM3871"/>
+ <gene reference="STM3864"/>
+ <gene reference="STM3865"/>
+ <gene reference="STM3866"/>
+ <gene reference="STM3867"/>
+ <gene reference="STM3868"/>
+ </and>
+ <and>
+ <gene reference="STM3869"/>
+ <gene reference="STM3870"/>
+ <gene reference="STM3871"/>
+ <gene reference="STM3864"/>
+ <gene reference="STM3865"/>
+ <gene reference="STM3866"/>
+ <gene reference="STM3867"/>
+ <gene reference="STM3868"/>
+ <gene reference="STM3872"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_320" reaction="R_BALAt2pp">
+ <gene reference="STM4398"/>
+ </geneAssociation>
+ <geneAssociation id="ga_321" reaction="R_BALAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_322" reaction="R_BSORx">
+ <gene reference="STM3644"/>
+ </geneAssociation>
+ <geneAssociation id="ga_323" reaction="R_BSORy">
+ <gene reference="STM3644"/>
+ </geneAssociation>
+ <geneAssociation id="ga_324" reaction="R_BTS4">
+ <gene reference="STM0794"/>
+ </geneAssociation>
+ <geneAssociation id="ga_325" reaction="R_BUTSO3tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_326" reaction="R_BUTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_327" reaction="R_CA2t3pp">
+ <gene reference="STM1771"/>
+ </geneAssociation>
+ <geneAssociation id="ga_328" reaction="R_CA2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_329" reaction="R_CADVtpp">
+ <gene reference="STM2558"/>
+ </geneAssociation>
+ <geneAssociation id="ga_330" reaction="R_CAt6pp">
+ <gene reference="STM3314"/>
+ </geneAssociation>
+ <geneAssociation id="ga_331" reaction="R_CBIAT">
+ <gene reference="STM1718"/>
+ </geneAssociation>
+ <geneAssociation id="ga_332" reaction="R_CBItonex">
+ <and>
+ <gene reference="STM4130"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_333" reaction="R_CBIuabcpp">
+ <and>
+ <gene reference="STM1340"/>
+ <gene reference="STM1342"/>
+ <gene reference="STM0206"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_334" reaction="R_CBL1abcpp">
+ <and>
+ <gene reference="STM1340"/>
+ <gene reference="STM1342"/>
+ <gene reference="STM0206"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_335" reaction="R_CBL1tonex">
+ <and>
+ <gene reference="STM4130"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_336" reaction="R_CBPS">
+ <and>
+ <gene reference="STM0066"/>
+ <gene reference="STM0067"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_337" reaction="R_CD2abcpp">
+ <gene reference="STM3576"/>
+ </geneAssociation>
+ <geneAssociation id="ga_338" reaction="R_CD2t3pp">
+ <or>
+ <gene reference="STM0758"/>
+ <gene reference="STM4061"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_339" reaction="R_CD2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_340" reaction="R_CD2tpp">
+ <gene reference="STM3190"/>
+ </geneAssociation>
+ <geneAssociation id="ga_341" reaction="R_CDAPPA120">
+ <gene reference="STM4064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_342" reaction="R_CDAPPA140">
+ <gene reference="STM4064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_343" reaction="R_CDAPPA141">
+ <gene reference="STM4064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_344" reaction="R_CDAPPA160">
+ <gene reference="STM4064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_345" reaction="R_CDAPPA161">
+ <gene reference="STM4064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_346" reaction="R_CDAPPA180">
+ <gene reference="STM4064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_347" reaction="R_CDAPPA181">
+ <gene reference="STM4064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_348" reaction="R_CDPMEK">
+ <gene reference="STM1779"/>
+ </geneAssociation>
+ <geneAssociation id="ga_349" reaction="R_CFAS160E">
+ <gene reference="STM1427"/>
+ </geneAssociation>
+ <geneAssociation id="ga_350" reaction="R_CFAS160G">
+ <gene reference="STM1427"/>
+ </geneAssociation>
+ <geneAssociation id="ga_351" reaction="R_CFAS180E">
+ <gene reference="STM1427"/>
+ </geneAssociation>
+ <geneAssociation id="ga_352" reaction="R_CFAS180G">
+ <gene reference="STM1427"/>
+ </geneAssociation>
+ <geneAssociation id="ga_353" reaction="R_CGLYabcpp">
+ <and>
+ <gene reference="STM3630"/>
+ <gene reference="STM3629"/>
+ <gene reference="STM3628"/>
+ <gene reference="STM3627"/>
+ <gene reference="STM3626"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_354" reaction="R_CGLYtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_355" reaction="R_CHLabcpp">
+ <and>
+ <gene reference="STM2162"/>
+ <gene reference="STM2163"/>
+ <gene reference="STM2164"/>
+ <gene reference="STM2165"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_356" reaction="R_CHLtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_357" reaction="R_CHORS">
+ <gene reference="STM2384"/>
+ </geneAssociation>
+ <geneAssociation id="ga_358" reaction="R_CHRPL">
+ <gene reference="STM4233"/>
+ </geneAssociation>
+ <geneAssociation id="ga_359" reaction="R_CITL">
+ <and>
+ <or>
+ <and>
+ <gene reference="STM0621"/>
+ <gene reference="STM0622"/>
+ <gene reference="STM0623"/>
+ </and>
+ <and>
+ <gene reference="STM0059"/>
+ <gene reference="STM0060"/>
+ <gene reference="STM0061"/>
+ </and>
+ </or>
+ <gene reference="STM0620"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_360" reaction="R_CITt7pp">
+ <gene reference="STM0618"/>
+ </geneAssociation>
+ <geneAssociation id="ga_361" reaction="R_CITtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_362" reaction="R_ICITtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_363" reaction="R_ACONCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_364" reaction="R_CLPNS120pp">
+ <or>
+ <gene reference="STM1739"/>
+ <gene reference="STM0812"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_365" reaction="R_CLPNS140pp">
+ <or>
+ <gene reference="STM1739"/>
+ <gene reference="STM0812"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_366" reaction="R_CLPNS141pp">
+ <or>
+ <gene reference="STM1739"/>
+ <gene reference="STM0812"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_367" reaction="R_CLPNS160pp">
+ <or>
+ <gene reference="STM1739"/>
+ <gene reference="STM0812"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_368" reaction="R_CLPNS161pp">
+ <or>
+ <gene reference="STM1739"/>
+ <gene reference="STM0812"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_369" reaction="R_CLPNS180pp">
+ <or>
+ <gene reference="STM1739"/>
+ <gene reference="STM0812"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_370" reaction="R_CLPNS181pp">
+ <or>
+ <gene reference="STM1739"/>
+ <gene reference="STM0812"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_371" reaction="R_CLt3_2pp">
+ <or>
+ <gene reference="STM0203"/>
+ <gene reference="STM1490"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_372" reaction="R_CLtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_373" reaction="R_CMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_374" reaction="R_CO2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_375" reaction="R_CO2tpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_376" reaction="R_COBALT2abcpp">
+ <gene reference="STM3576"/>
+ </geneAssociation>
+ <geneAssociation id="ga_377" reaction="R_COBALT2t3pp">
+ <or>
+ <gene reference="STM4061"/>
+ <gene reference="STM0758"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_378" reaction="R_COBALT2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_379" reaction="R_COBALT2tpp">
+ <or>
+ <gene reference="STM3190"/>
+ <gene reference="STM3952"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_380" reaction="R_COLIPAabcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_381" reaction="R_CPGNabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_382" reaction="R_CPGNexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_383" reaction="R_CPGNtonex">
+ <and>
+ <gene reference="STM1204"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_384" reaction="R_CPPPGO">
+ <gene reference="STM2451"/>
+ </geneAssociation>
+ <geneAssociation id="ga_385" reaction="R_CPPPGO2">
+ <gene reference="STM4004"/>
+ </geneAssociation>
+ <geneAssociation id="ga_386" reaction="R_CRNBTCT">
+ <gene reference="STM0072"/>
+ </geneAssociation>
+ <geneAssociation id="ga_387" reaction="R_CRNCAL2">
+ <gene reference="STM0071"/>
+ </geneAssociation>
+ <geneAssociation id="ga_388" reaction="R_CRNCAR">
+ <gene reference="STM0070"/>
+ </geneAssociation>
+ <geneAssociation id="ga_389" reaction="R_CRNCBCT">
+ <gene reference="STM0072"/>
+ </geneAssociation>
+ <geneAssociation id="ga_390" reaction="R_CRNCDH">
+ <gene reference="STM0070"/>
+ </geneAssociation>
+ <geneAssociation id="ga_391" reaction="R_CRNDCAL2">
+ <gene reference="STM0071"/>
+ </geneAssociation>
+ <geneAssociation id="ga_392" reaction="R_CRNDabcpp">
+ <and>
+ <gene reference="STM2809"/>
+ <gene reference="STM2810"/>
+ <gene reference="STM2811"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_393" reaction="R_CRNDt2rpp">
+ <gene reference="STM4290"/>
+ </geneAssociation>
+ <geneAssociation id="ga_394" reaction="R_CRNabcpp">
+ <and>
+ <gene reference="STM2809"/>
+ <gene reference="STM2810"/>
+ <gene reference="STM2811"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_395" reaction="R_CRNt2rpp">
+ <gene reference="STM4290"/>
+ </geneAssociation>
+ <geneAssociation id="ga_396" reaction="R_CRNt7pp">
+ <gene reference="STM0074"/>
+ </geneAssociation>
+ <geneAssociation id="ga_397" reaction="R_CRNt8pp">
+ <gene reference="STM0074"/>
+ </geneAssociation>
+ <geneAssociation id="ga_398" reaction="R_CRNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_399" reaction="R_CS">
+ <gene reference="STM0730"/>
+ </geneAssociation>
+ <geneAssociation id="ga_400" reaction="R_CSNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_401" reaction="R_CTBTCAL2">
+ <gene reference="STM0071"/>
+ </geneAssociation>
+ <geneAssociation id="ga_402" reaction="R_CTBTabcpp">
+ <and>
+ <gene reference="STM2809"/>
+ <gene reference="STM2810"/>
+ <gene reference="STM2811"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_403" reaction="R_CTBTt2rpp">
+ <gene reference="STM4290"/>
+ </geneAssociation>
+ <geneAssociation id="ga_404" reaction="R_CTPS2">
+ <gene reference="STM2953"/>
+ </geneAssociation>
+ <geneAssociation id="ga_405" reaction="R_CU1Opp">
+ <gene reference="STM0168"/>
+ </geneAssociation>
+ <geneAssociation id="ga_406" reaction="R_CU1abcpp">
+ <gene reference="STM0498"/>
+ </geneAssociation>
+ <geneAssociation id="ga_407" reaction="R_AU1abcpp">
+ <gene reference="STM0353"/>
+ </geneAssociation>
+ <geneAssociation id="ga_408" reaction="R_CU2abcpp">
+ <gene reference="STM3576"/>
+ </geneAssociation>
+ <geneAssociation id="ga_409" reaction="R_CU2tex">
+ <or>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_410" reaction="R_CU2tpp">
+ <gene reference="STM3190"/>
+ </geneAssociation>
+ <geneAssociation id="ga_411" reaction="R_CUtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_412" reaction="R_CYANST">
+ <gene reference="STM3525"/>
+ </geneAssociation>
+ <geneAssociation id="ga_413" reaction="R_CYANSTpp">
+ <gene reference="STM1686"/>
+ </geneAssociation>
+ <geneAssociation id="ga_414" reaction="R_CYANtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_415" reaction="R_CYNTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_416" reaction="R_CYSDS">
+ <gene reference="STM3161"/>
+ </geneAssociation>
+ <geneAssociation id="ga_417" reaction="R_CYSDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_418" reaction="R_CYSS">
+ <or>
+ <gene reference="STM2430"/>
+ <gene reference="STM2440"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_419" reaction="R_CYSSADS">
+ <gene reference="STM2984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_420" reaction="R_CYSTL">
+ <or>
+ <gene reference="STM3161"/>
+ <gene reference="STM1557"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_421" reaction="R_CYSTRS">
+ <gene reference="STM0537"/>
+ </geneAssociation>
+ <geneAssociation id="ga_422" reaction="R_CYSabc2pp">
+ <and>
+ <gene reference="STM0956"/>
+ <gene reference="STM0957"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_423" reaction="R_CYStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_424" reaction="R_CYSItex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_425" reaction="R_CYStpp">
+ <or>
+ <gene reference="STM2645"/>
+ <gene reference="STM1517"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_426" reaction="R_CYTBO3_4pp">
+ <and>
+ <gene reference="STM0440"/>
+ <gene reference="STM0441"/>
+ <gene reference="STM0442"/>
+ <gene reference="STM0443"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_427" reaction="R_CYTD">
+ <gene reference="STM2183"/>
+ </geneAssociation>
+ <geneAssociation id="ga_428" reaction="R_CYTDH">
+ <or>
+ <gene reference="STM0661"/>
+ <gene reference="STM0051"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_429" reaction="R_CYTDK2">
+ <gene reference="STM2122"/>
+ </geneAssociation>
+ <geneAssociation id="ga_430" reaction="R_CYTDt2pp">
+ <or>
+ <gene reference="STM3113"/>
+ <gene reference="STM2409"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_431" reaction="R_CYTDt2rpp">
+ <gene reference="STM2421"/>
+ </geneAssociation>
+ <geneAssociation id="ga_432" reaction="R_CYTDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_433" reaction="R_CYTK1">
+ <gene reference="STM0980"/>
+ </geneAssociation>
+ <geneAssociation id="ga_434" reaction="R_CYTK2">
+ <gene reference="STM0980"/>
+ </geneAssociation>
+ <geneAssociation id="ga_435" reaction="R_DAAD">
+ <gene reference="STM1803"/>
+ </geneAssociation>
+ <geneAssociation id="ga_436" reaction="R_DADA">
+ <gene reference="STM1463"/>
+ </geneAssociation>
+ <geneAssociation id="ga_437" reaction="R_DADK">
+ <gene reference="STM0488"/>
+ </geneAssociation>
+ <geneAssociation id="ga_438" reaction="R_DADNt2pp">
+ <or>
+ <gene reference="STM2409"/>
+ <gene reference="STM3113"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_439" reaction="R_DADNtex">
+ <gene reference="STM0413"/>
+ </geneAssociation>
+ <geneAssociation id="ga_440" reaction="R_DAGK120">
+ <gene reference="STM4236"/>
+ </geneAssociation>
+ <geneAssociation id="ga_441" reaction="R_DAGK140">
+ <gene reference="STM4236"/>
+ </geneAssociation>
+ <geneAssociation id="ga_442" reaction="R_DAGK141">
+ <gene reference="STM4236"/>
+ </geneAssociation>
+ <geneAssociation id="ga_443" reaction="R_DAGK160">
+ <gene reference="STM4236"/>
+ </geneAssociation>
+ <geneAssociation id="ga_444" reaction="R_DAGK161">
+ <gene reference="STM4236"/>
+ </geneAssociation>
+ <geneAssociation id="ga_445" reaction="R_DAGK180">
+ <gene reference="STM4236"/>
+ </geneAssociation>
+ <geneAssociation id="ga_446" reaction="R_DAGK181">
+ <gene reference="STM4236"/>
+ </geneAssociation>
+ <geneAssociation id="ga_447" reaction="R_DALAt2pp">
+ <gene reference="STM4398"/>
+ </geneAssociation>
+ <geneAssociation id="ga_448" reaction="R_DALAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_449" reaction="R_DAMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_450" reaction="R_DAPDC">
+ <gene reference="STM3013"/>
+ </geneAssociation>
+ <geneAssociation id="ga_451" reaction="R_DAPE">
+ <gene reference="STM3947"/>
+ </geneAssociation>
+ <geneAssociation id="ga_452" reaction="R_DAPabcpp">
+ <gene reference="STM1954"/>
+ </geneAssociation>
+ <geneAssociation id="ga_453" reaction="R_DAPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_454" reaction="R_DASYN120">
+ <gene reference="STM0222"/>
+ </geneAssociation>
+ <geneAssociation id="ga_455" reaction="R_DASYN140">
+ <gene reference="STM0222"/>
+ </geneAssociation>
+ <geneAssociation id="ga_456" reaction="R_DASYN141">
+ <gene reference="STM0222"/>
+ </geneAssociation>
+ <geneAssociation id="ga_457" reaction="R_DASYN160">
+ <gene reference="STM0222"/>
+ </geneAssociation>
+ <geneAssociation id="ga_458" reaction="R_DASYN161">
+ <gene reference="STM0222"/>
+ </geneAssociation>
+ <geneAssociation id="ga_459" reaction="R_DASYN180">
+ <gene reference="STM0222"/>
+ </geneAssociation>
+ <geneAssociation id="ga_460" reaction="R_DASYN181">
+ <gene reference="STM0222"/>
+ </geneAssociation>
+ <geneAssociation id="ga_461" reaction="R_DATPHs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_462" reaction="R_DB4PS">
+ <gene reference="STM3195"/>
+ </geneAssociation>
+ <geneAssociation id="ga_463" reaction="R_DBTS">
+ <or>
+ <gene reference="STM0797"/>
+ <gene reference="STM1489"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_464" reaction="R_DCAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_465" reaction="R_DCMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_466" reaction="R_DCTPD">
+ <gene reference="STM2121"/>
+ </geneAssociation>
+ <geneAssociation id="ga_467" reaction="R_DCYTD">
+ <gene reference="STM2183"/>
+ </geneAssociation>
+ <geneAssociation id="ga_468" reaction="R_DCYTt2pp">
+ <or>
+ <gene reference="STM3113"/>
+ <gene reference="STM2409"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_469" reaction="R_DCYTtex">
+ <gene reference="STM0413"/>
+ </geneAssociation>
+ <geneAssociation id="ga_470" reaction="R_DDCAtexi">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_471" reaction="R_DDGALK">
+ <gene reference="STM3829"/>
+ </geneAssociation>
+ <geneAssociation id="ga_472" reaction="R_DDGLCNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_473" reaction="R_DDGLK">
+ <gene reference="STM3612"/>
+ </geneAssociation>
+ <geneAssociation id="ga_474" reaction="R_DDPA">
+ <or>
+ <gene reference="STM2670"/>
+ <gene reference="STM0760"/>
+ <gene reference="STM1347"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_475" reaction="R_DGK1">
+ <gene reference="STM3740"/>
+ </geneAssociation>
+ <geneAssociation id="ga_476" reaction="R_DGMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_477" reaction="R_DGSNt2pp">
+ <gene reference="STM3113"/>
+ </geneAssociation>
+ <geneAssociation id="ga_478" reaction="R_DGSNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_479" reaction="R_DHAD1">
+ <gene reference="STM3904"/>
+ </geneAssociation>
+ <geneAssociation id="ga_480" reaction="R_DHAD2">
+ <gene reference="STM3904"/>
+ </geneAssociation>
+ <geneAssociation id="ga_481" reaction="R_DHAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_482" reaction="R_DHBD">
+ <gene reference="STM0598"/>
+ </geneAssociation>
+ <geneAssociation id="ga_483" reaction="R_DHBS">
+ <gene reference="STM0596"/>
+ </geneAssociation>
+ <geneAssociation id="ga_484" reaction="R_DHDPRy">
+ <gene reference="STM0064"/>
+ </geneAssociation>
+ <geneAssociation id="ga_485" reaction="R_DHDPS">
+ <gene reference="STM2489"/>
+ </geneAssociation>
+ <geneAssociation id="ga_486" reaction="R_DHFR">
+ <gene reference="STM0087"/>
+ </geneAssociation>
+ <geneAssociation id="ga_487" reaction="R_DHFS">
+ <gene reference="STM2365"/>
+ </geneAssociation>
+ <geneAssociation id="ga_488" reaction="R_DHNAOT4">
+ <gene reference="STM4090"/>
+ </geneAssociation>
+ <geneAssociation id="ga_489" reaction="R_DHNPA2">
+ <gene reference="STM3206"/>
+ </geneAssociation>
+ <geneAssociation id="ga_490" reaction="R_DHORD2">
+ <gene reference="STM1058"/>
+ </geneAssociation>
+ <geneAssociation id="ga_491" reaction="R_DHORD5">
+ <gene reference="STM1058"/>
+ </geneAssociation>
+ <geneAssociation id="ga_492" reaction="R_DHORTS">
+ <gene reference="STM1163"/>
+ </geneAssociation>
+ <geneAssociation id="ga_493" reaction="R_DHPPDA2">
+ <gene reference="STM0416"/>
+ </geneAssociation>
+ <geneAssociation id="ga_494" reaction="R_DHPS2">
+ <gene reference="STM3295"/>
+ </geneAssociation>
+ <geneAssociation id="ga_495" reaction="R_DHPTDCs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_496" reaction="R_DHQS">
+ <gene reference="STM3486"/>
+ </geneAssociation>
+ <geneAssociation id="ga_497" reaction="R_DHQTi">
+ <gene reference="STM1358"/>
+ </geneAssociation>
+ <geneAssociation id="ga_498" reaction="R_DIMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_499" reaction="R_DINSt2pp">
+ <gene reference="STM3113"/>
+ </geneAssociation>
+ <geneAssociation id="ga_500" reaction="R_DINStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_501" reaction="R_DKGLCNR1">
+ <or>
+ <gene reference="STM3165"/>
+ <gene reference="STM0255"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_502" reaction="R_DKGLCNR2x">
+ <gene reference="STM3646"/>
+ </geneAssociation>
+ <geneAssociation id="ga_503" reaction="R_DKGLCNR2y">
+ <gene reference="STM3646"/>
+ </geneAssociation>
+ <geneAssociation id="ga_504" reaction="R_DMATT">
+ <gene reference="STM0423"/>
+ </geneAssociation>
+ <geneAssociation id="ga_505" reaction="R_DMPPS">
+ <gene reference="STM0049"/>
+ </geneAssociation>
+ <geneAssociation id="ga_506" reaction="R_DMQMT">
+ <gene reference="STM2276"/>
+ </geneAssociation>
+ <geneAssociation id="ga_507" reaction="R_DMSOtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_508" reaction="R_DMStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_509" reaction="R_DNTPPA">
+ <or>
+ <gene reference="STM1900"/>
+ <gene reference="STM0137"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_510" reaction="R_DOGULNR">
+ <gene reference="STM3668"/>
+ </geneAssociation>
+ <geneAssociation id="ga_511" reaction="R_DOPAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_512" reaction="R_DPCOAK">
+ <gene reference="STM0140"/>
+ </geneAssociation>
+ <geneAssociation id="ga_513" reaction="R_DRPA">
+ <gene reference="STM4567"/>
+ </geneAssociation>
+ <geneAssociation id="ga_514" reaction="R_DSBAO1">
+ <and>
+ <gene reference="STM3997"/>
+ <gene reference="STM1807"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_515" reaction="R_DSBAO2">
+ <and>
+ <gene reference="STM3997"/>
+ <gene reference="STM1807"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_516" reaction="R_DSBCGT">
+ <gene reference="STM3043"/>
+ </geneAssociation>
+ <geneAssociation id="ga_517" reaction="R_DSBDR">
+ <or>
+ <and>
+ <gene reference="STM4323"/>
+ <gene reference="STM3915"/>
+ </and>
+ <and>
+ <gene reference="STM4323"/>
+ <gene reference="STM2649"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_518" reaction="R_DSBGGT">
+ <gene reference="STM0607"/>
+ </geneAssociation>
+ <geneAssociation id="ga_519" reaction="R_DSERDHr">
+ <gene reference="STM1511"/>
+ </geneAssociation>
+ <geneAssociation id="ga_520" reaction="R_DSERt2pp">
+ <gene reference="STM4398"/>
+ </geneAssociation>
+ <geneAssociation id="ga_521" reaction="R_DSERtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_522" reaction="R_DTMPK">
+ <gene reference="STM1200"/>
+ </geneAssociation>
+ <geneAssociation id="ga_523" reaction="R_DTMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_524" reaction="R_DUMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_525" reaction="R_DURIK1">
+ <gene reference="STM1750"/>
+ </geneAssociation>
+ <geneAssociation id="ga_526" reaction="R_DURIPP">
+ <or>
+ <gene reference="STM4568"/>
+ <gene reference="STM4570"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_527" reaction="R_DURIt2pp">
+ <or>
+ <gene reference="STM2409"/>
+ <gene reference="STM3113"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_528" reaction="R_DURItex">
+ <gene reference="STM0413"/>
+ </geneAssociation>
+ <geneAssociation id="ga_529" reaction="R_DUTPDP">
+ <gene reference="STM3731"/>
+ </geneAssociation>
+ <geneAssociation id="ga_530" reaction="R_DXPRIi">
+ <gene reference="STM0220"/>
+ </geneAssociation>
+ <geneAssociation id="ga_531" reaction="R_DXPS">
+ <gene reference="STM0422"/>
+ </geneAssociation>
+ <geneAssociation id="ga_532" reaction="R_DXYLK">
+ <gene reference="STM3660"/>
+ </geneAssociation>
+ <geneAssociation id="ga_533" reaction="R_D_LACt2pp">
+ <gene reference="STM3692"/>
+ </geneAssociation>
+ <geneAssociation id="ga_534" reaction="R_D_LACtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_535" reaction="R_E4PD">
+ <gene reference="STM3070"/>
+ </geneAssociation>
+ <geneAssociation id="ga_536" reaction="R_EAR100x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_537" reaction="R_EAR100y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_538" reaction="R_EAR120x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_539" reaction="R_EAR120y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_540" reaction="R_EAR121x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_541" reaction="R_EAR121y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_542" reaction="R_EAR140x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_543" reaction="R_EAR140y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_544" reaction="R_EAR141x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_545" reaction="R_EAR141y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_546" reaction="R_EAR160x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_547" reaction="R_EAR160y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_548" reaction="R_EAR161x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_549" reaction="R_EAR161y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_550" reaction="R_EAR180x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_551" reaction="R_EAR180y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_552" reaction="R_EAR181x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_553" reaction="R_EAR181y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_554" reaction="R_EAR40x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_555" reaction="R_EAR40y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_556" reaction="R_EAR60x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_557" reaction="R_EAR60y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_558" reaction="R_EAR80x">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_559" reaction="R_EAR80y">
+ <gene reference="STM1700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_560" reaction="R_ECA4OALpp">
+ <gene reference="STM3713"/>
+ </geneAssociation>
+ <geneAssociation id="ga_561" reaction="R_ECAP1pp">
+ <and>
+ <gene reference="STM3928"/>
+ <gene reference="STM3919"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_562" reaction="R_ECAP2pp">
+ <and>
+ <gene reference="STM3928"/>
+ <gene reference="STM3919"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_563" reaction="R_ECAP3pp">
+ <and>
+ <gene reference="STM3928"/>
+ <gene reference="STM3919"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_564" reaction="R_ECAtpp">
+ <gene reference="STM3926"/>
+ </geneAssociation>
+ <geneAssociation id="ga_565" reaction="R_ECOAH1">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_566" reaction="R_ECOAH2">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_567" reaction="R_ECOAH3">
+ <or>
+ <gene reference="STM2388"/>
+ <gene reference="STM3983"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_568" reaction="R_ECOAH4">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_569" reaction="R_ECOAH5">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_570" reaction="R_ECOAH6">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_571" reaction="R_ECOAH7">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_572" reaction="R_ECOAH8">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_573" reaction="R_EDA">
+ <gene reference="STM1884"/>
+ </geneAssociation>
+ <geneAssociation id="ga_574" reaction="R_EDD">
+ <gene reference="STM1885"/>
+ </geneAssociation>
+ <geneAssociation id="ga_575" reaction="R_EDTXS1">
+ <gene reference="STM1155"/>
+ </geneAssociation>
+ <geneAssociation id="ga_576" reaction="R_EDTXS2">
+ <gene reference="STM1889"/>
+ </geneAssociation>
+ <geneAssociation id="ga_577" reaction="R_EDTXS3">
+ <gene reference="STM2401"/>
+ </geneAssociation>
+ <geneAssociation id="ga_578" reaction="R_EDTXS4">
+ <gene reference="STM1889"/>
+ </geneAssociation>
+ <geneAssociation id="ga_579" reaction="R_ENO">
+ <gene reference="STM2952"/>
+ </geneAssociation>
+ <geneAssociation id="ga_580" reaction="R_ENTCS">
+ <gene reference="STM0584"/>
+ </geneAssociation>
+ <geneAssociation id="ga_581" reaction="R_ETHAAL">
+ <and>
+ <gene reference="STM2457"/>
+ <gene reference="STM2458"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_582" reaction="R_ETHAt2pp">
+ <gene reference="STM2460"/>
+ </geneAssociation>
+ <geneAssociation id="ga_583" reaction="R_ETHAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_584" reaction="R_ETHSO3tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_585" reaction="R_ETOHtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_586" reaction="R_F6PA">
+ <gene reference="STM4109"/>
+ </geneAssociation>
+ <geneAssociation id="ga_587" reaction="R_F6PP">
+ <or>
+ <gene reference="STM0840"/>
+ <gene reference="STM0842"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_588" reaction="R_F6Pt6_2pp">
+ <gene reference="STM3787"/>
+ </geneAssociation>
+ <geneAssociation id="ga_589" reaction="R_F6Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_590" reaction="R_FA100ACPHi">
+ <gene reference="STM0403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_591" reaction="R_FA120ACPHi">
+ <gene reference="STM0403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_592" reaction="R_FA140ACPHi">
+ <gene reference="STM0403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_593" reaction="R_FA141ACPHi">
+ <gene reference="STM0403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_594" reaction="R_FA160ACPHi">
+ <gene reference="STM0403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_595" reaction="R_FA161ACPHi">
+ <gene reference="STM0403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_596" reaction="R_FA80ACPHi">
+ <gene reference="STM0403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_597" reaction="R_FACOAE100">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_598" reaction="R_FACOAE120">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_599" reaction="R_FACOAE140">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_600" reaction="R_FACOAE141">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_601" reaction="R_FACOAE160">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_602" reaction="R_FACOAE161">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_603" reaction="R_FACOAE180">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_604" reaction="R_FACOAE181">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_605" reaction="R_FACOAE60">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_606" reaction="R_FACOAE80">
+ <gene reference="STM0464"/>
+ </geneAssociation>
+ <geneAssociation id="ga_607" reaction="R_FACOAL100t2pp">
+ <or>
+ <gene reference="STM1818"/>
+ <gene reference="STM1350"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_608" reaction="R_FACOAL120t2pp">
+ <or>
+ <gene reference="STM1350"/>
+ <gene reference="STM1818"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_609" reaction="R_FACOAL140t2pp">
+ <or>
+ <gene reference="STM1818"/>
+ <gene reference="STM1350"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_610" reaction="R_FACOAL141t2pp">
+ <or>
+ <gene reference="STM1350"/>
+ <gene reference="STM1818"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_611" reaction="R_FACOAL160t2pp">
+ <or>
+ <gene reference="STM1350"/>
+ <gene reference="STM1818"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_612" reaction="R_FACOAL161t2pp">
+ <or>
+ <gene reference="STM1818"/>
+ <gene reference="STM1350"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_613" reaction="R_FACOAL180t2pp">
+ <or>
+ <gene reference="STM1818"/>
+ <gene reference="STM1350"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_614" reaction="R_FACOAL181t2pp">
+ <or>
+ <gene reference="STM1818"/>
+ <gene reference="STM1350"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_615" reaction="R_FACOAL60t2pp">
+ <or>
+ <gene reference="STM1818"/>
+ <gene reference="STM1350"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_616" reaction="R_FACOAL80t2pp">
+ <or>
+ <gene reference="STM1818"/>
+ <gene reference="STM1350"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_617" reaction="R_FADRx">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_618" reaction="R_FADRx2">
+ <and>
+ <gene reference="STM2947"/>
+ <gene reference="STM2948"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_619" reaction="R_FALDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_620" reaction="R_FALDtpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_621" reaction="R_FALGTHLs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_622" reaction="R_FBA">
+ <or>
+ <gene reference="STM2141"/>
+ <gene reference="STM3068"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_623" reaction="R_FBP">
+ <or>
+ <gene reference="STM4085"/>
+ <gene reference="STM4415"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_624" reaction="R_FCI">
+ <gene reference="STM2976"/>
+ </geneAssociation>
+ <geneAssociation id="ga_625" reaction="R_FCLK">
+ <gene reference="STM2977"/>
+ </geneAssociation>
+ <geneAssociation id="ga_626" reaction="R_FCLPA">
+ <or>
+ <gene reference="STM2974"/>
+ <gene reference="STM2916"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_627" reaction="R_FCLT">
+ <gene reference="STM0489"/>
+ </geneAssociation>
+ <geneAssociation id="ga_628" reaction="R_FDH4pp">
+ <or>
+ <and>
+ <gene reference="STM4035"/>
+ <gene reference="STM4036"/>
+ <gene reference="STM4037"/>
+ </and>
+ <and>
+ <gene reference="STM1570"/>
+ <gene reference="STM1569"/>
+ <gene reference="STM1568"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_629" reaction="R_FDH5pp">
+ <or>
+ <and>
+ <gene reference="STM1570"/>
+ <gene reference="STM1569"/>
+ <gene reference="STM1568"/>
+ </and>
+ <and>
+ <gene reference="STM4035"/>
+ <gene reference="STM4036"/>
+ <gene reference="STM4037"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_630" reaction="R_FE2t2pp">
+ <gene reference="STM2408"/>
+ </geneAssociation>
+ <geneAssociation id="ga_631" reaction="R_FE2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_632" reaction="R_FE2tpp">
+ <gene reference="STM3190"/>
+ </geneAssociation>
+ <geneAssociation id="ga_633" reaction="R_FE3DHBZSabcpp">
+ <and>
+ <gene reference="STM0594"/>
+ <gene reference="STM0590"/>
+ <gene reference="STM0592"/>
+ <gene reference="STM0591"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_634" reaction="R_FE3DHBZStonex">
+ <and>
+ <gene reference="STM2199"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_635" reaction="R_FE3HOXexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_636" reaction="R_FE3HOXtonex">
+ <and>
+ <gene reference="STM0191"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_637" reaction="R_FE3Ri">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_638" reaction="R_FE3tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_639" reaction="R_FECRMabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_640" reaction="R_FECRMexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_641" reaction="R_FECRMtonex">
+ <and>
+ <gene reference="STM0191"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_642" reaction="R_FEENTERabcpp">
+ <and>
+ <gene reference="STM0594"/>
+ <gene reference="STM0590"/>
+ <gene reference="STM0592"/>
+ <gene reference="STM0591"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_643" reaction="R_FEENTERexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_644" reaction="R_FEENTERtonex">
+ <and>
+ <gene reference="STM0585"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_645" reaction="R_FEENTERtpp">
+ <gene reference="STM0593"/>
+ </geneAssociation>
+ <geneAssociation id="ga_646" reaction="R_FEOXAMabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_647" reaction="R_FEOXAMexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_648" reaction="R_FEOXAMtonex">
+ <and>
+ <gene reference="STM0191"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_649" reaction="R_FEROpp">
+ <gene reference="STM0168"/>
+ </geneAssociation>
+ <geneAssociation id="ga_650" reaction="R_FHL">
+ <and>
+ <gene reference="STM4285"/>
+ <gene reference="STM2847"/>
+ <gene reference="STM2848"/>
+ <gene reference="STM2849"/>
+ <gene reference="STM2850"/>
+ <gene reference="STM2851"/>
+ <gene reference="STM2852"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_651" reaction="R_FLDR">
+ <or>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4084"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4084"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_652" reaction="R_FLVR">
+ <or>
+ <and>
+ <gene reference="STM2947"/>
+ <gene reference="STM2948"/>
+ </and>
+ <gene reference="STM3979"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_653" reaction="R_FLVRx">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_654" reaction="R_FMETTRS">
+ <gene reference="STM3407"/>
+ </geneAssociation>
+ <geneAssociation id="ga_655" reaction="R_FMNAT">
+ <gene reference="STM0045"/>
+ </geneAssociation>
+ <geneAssociation id="ga_656" reaction="R_FMNRx">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_657" reaction="R_FMNRx2">
+ <or>
+ <and>
+ <gene reference="STM2947"/>
+ <gene reference="STM2948"/>
+ </and>
+ <gene reference="STM3979"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_658" reaction="R_FORt2pp">
+ <gene reference="STM0974"/>
+ </geneAssociation>
+ <geneAssociation id="ga_659" reaction="R_FORtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_660" reaction="R_FORtppi">
+ <gene reference="STM0974"/>
+ </geneAssociation>
+ <geneAssociation id="ga_661" reaction="R_FRD2">
+ <and>
+ <gene reference="STM4340"/>
+ <gene reference="STM4341"/>
+ <gene reference="STM4342"/>
+ <gene reference="STM4343"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_662" reaction="R_FRD3">
+ <and>
+ <gene reference="STM4340"/>
+ <gene reference="STM4341"/>
+ <gene reference="STM4342"/>
+ <gene reference="STM4343"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_663" reaction="R_FRUK">
+ <gene reference="STM2205"/>
+ </geneAssociation>
+ <geneAssociation id="ga_664" reaction="R_FRULYStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_665" reaction="R_FRUURtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_666" reaction="R_FRUpts2pp">
+ <and>
+ <gene reference="STM1830"/>
+ <gene reference="STM1831"/>
+ <gene reference="STM1832"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_667" reaction="R_FRUptspp">
+ <and>
+ <gene reference="STM2204"/>
+ <gene reference="STM2206"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_668" reaction="R_FRUtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_669" reaction="R_FTHFD">
+ <gene reference="STM1756"/>
+ </geneAssociation>
+ <geneAssociation id="ga_670" reaction="R_FUCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_671" reaction="R_FUCtpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_672" reaction="R_FUM">
+ <or>
+ <gene reference="STM1468"/>
+ <gene reference="STM4300"/>
+ <gene reference="STM1469"/>
+ <and>
+ <gene reference="STM0761"/>
+ <gene reference="STM0762"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_673" reaction="R_FUMt2_2pp">
+ <gene reference="STM3614"/>
+ </geneAssociation>
+ <geneAssociation id="ga_674" reaction="R_FUMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_675" reaction="R_G1PACT">
+ <gene reference="STM3862"/>
+ </geneAssociation>
+ <geneAssociation id="ga_676" reaction="R_G1PPpp">
+ <gene reference="STM1117"/>
+ </geneAssociation>
+ <geneAssociation id="ga_677" reaction="R_G1PTT">
+ <or>
+ <gene reference="STM3923"/>
+ <gene reference="STM2095"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_678" reaction="R_G1Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_679" reaction="R_G1SAT">
+ <gene reference="STM0202"/>
+ </geneAssociation>
+ <geneAssociation id="ga_680" reaction="R_G2PPpp">
+ <gene reference="STM4249"/>
+ </geneAssociation>
+ <geneAssociation id="ga_681" reaction="R_G3PAT120">
+ <gene reference="STM4235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_682" reaction="R_G3PAT140">
+ <gene reference="STM4235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_683" reaction="R_G3PAT141">
+ <gene reference="STM4235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_684" reaction="R_G3PAT160">
+ <gene reference="STM4235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_685" reaction="R_G3PAT161">
+ <gene reference="STM4235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_686" reaction="R_G3PAT180">
+ <gene reference="STM4235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_687" reaction="R_G3PAT181">
+ <gene reference="STM4235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_688" reaction="R_G3PCabcpp">
+ <and>
+ <gene reference="STM3556"/>
+ <gene reference="STM3557"/>
+ <gene reference="STM3554"/>
+ <gene reference="STM3555"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_689" reaction="R_G3PCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_690" reaction="R_G3PD2">
+ <gene reference="STM3700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_691" reaction="R_G3PD5">
+ <or>
+ <and>
+ <gene reference="STM2284"/>
+ <gene reference="STM2285"/>
+ <gene reference="STM2286"/>
+ </and>
+ <gene reference="STM3526"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_692" reaction="R_G3PD6">
+ <and>
+ <gene reference="STM2284"/>
+ <gene reference="STM2285"/>
+ <gene reference="STM2286"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_693" reaction="R_G3PD7">
+ <and>
+ <gene reference="STM2284"/>
+ <gene reference="STM2285"/>
+ <gene reference="STM2286"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_694" reaction="R_G3PEabcpp">
+ <and>
+ <gene reference="STM3556"/>
+ <gene reference="STM3557"/>
+ <gene reference="STM3554"/>
+ <gene reference="STM3555"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_695" reaction="R_G3PEtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_696" reaction="R_G3PGabcpp">
+ <and>
+ <gene reference="STM3556"/>
+ <gene reference="STM3557"/>
+ <gene reference="STM3554"/>
+ <gene reference="STM3555"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_697" reaction="R_G3PGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_698" reaction="R_G3PIabcpp">
+ <and>
+ <gene reference="STM3556"/>
+ <gene reference="STM3557"/>
+ <gene reference="STM3554"/>
+ <gene reference="STM3555"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_699" reaction="R_G3PItex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_700" reaction="R_G3PSabcpp">
+ <and>
+ <gene reference="STM3556"/>
+ <gene reference="STM3557"/>
+ <gene reference="STM3554"/>
+ <gene reference="STM3555"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_701" reaction="R_G3PStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_702" reaction="R_G3PT">
+ <or>
+ <gene reference="STM0840"/>
+ <gene reference="STM0842"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_703" reaction="R_G5SADs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_704" reaction="R_G5SD">
+ <gene reference="STM0322"/>
+ </geneAssociation>
+ <geneAssociation id="ga_705" reaction="R_G6PDA">
+ <gene reference="STM0684"/>
+ </geneAssociation>
+ <geneAssociation id="ga_706" reaction="R_G6PDH2r">
+ <gene reference="STM1886"/>
+ </geneAssociation>
+ <geneAssociation id="ga_707" reaction="R_G6PP">
+ <or>
+ <gene reference="STM0840"/>
+ <gene reference="STM0842"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_708" reaction="R_G6Pt6_2pp">
+ <gene reference="STM3787"/>
+ </geneAssociation>
+ <geneAssociation id="ga_709" reaction="R_G6Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_710" reaction="R_GAL1PPpp">
+ <gene reference="STM1117"/>
+ </geneAssociation>
+ <geneAssociation id="ga_711" reaction="R_GAL1Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_712" reaction="R_GALBDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_713" reaction="R_GALCTNLtex">
+ <or>
+ <gene reference="STM2267"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM0320"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_714" reaction="R_GALCTNt2pp">
+ <gene reference="STM3827"/>
+ </geneAssociation>
+ <geneAssociation id="ga_715" reaction="R_GALCTNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_716" reaction="R_GALCTt2rpp">
+ <gene reference="STM2962"/>
+ </geneAssociation>
+ <geneAssociation id="ga_717" reaction="R_GALCTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_718" reaction="R_GALKr">
+ <or>
+ <gene reference="STM0774"/>
+ <gene reference="STM2101"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_719" reaction="R_GALM2pp">
+ <gene reference="STM0773"/>
+ </geneAssociation>
+ <geneAssociation id="ga_720" reaction="R_GALS3">
+ <gene reference="STM4298"/>
+ </geneAssociation>
+ <geneAssociation id="ga_721" reaction="R_GALT1">
+ <gene reference="STM3719"/>
+ </geneAssociation>
+ <geneAssociation id="ga_722" reaction="R_GALTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_723" reaction="R_GALURt2rpp">
+ <gene reference="STM3134"/>
+ </geneAssociation>
+ <geneAssociation id="ga_724" reaction="R_GALURtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_725" reaction="R_GALUi">
+ <and>
+ <gene reference="STM1752"/>
+ <gene reference="STM2098"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_726" reaction="R_GALabcpp">
+ <and>
+ <gene reference="STM2189"/>
+ <gene reference="STM2190"/>
+ <gene reference="STM2188"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_727" reaction="R_GALt2pp">
+ <gene reference="STM3091"/>
+ </geneAssociation>
+ <geneAssociation id="ga_728" reaction="R_GALtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_729" reaction="R_GAM6Pt6_2pp">
+ <gene reference="STM3787"/>
+ </geneAssociation>
+ <geneAssociation id="ga_730" reaction="R_GAMAN6Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_731" reaction="R_GAMptspp">
+ <and>
+ <gene reference="STM1830"/>
+ <gene reference="STM1831"/>
+ <gene reference="STM1832"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_732" reaction="R_GAMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_733" reaction="R_GAPD">
+ <gene reference="STM1290"/>
+ </geneAssociation>
+ <geneAssociation id="ga_734" reaction="R_GARFT">
+ <gene reference="STM2500"/>
+ </geneAssociation>
+ <geneAssociation id="ga_735" reaction="R_GART">
+ <gene reference="STM1883"/>
+ </geneAssociation>
+ <geneAssociation id="ga_736" reaction="R_GBBTNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_737" reaction="R_GDMANE">
+ <gene reference="STM2108"/>
+ </geneAssociation>
+ <geneAssociation id="ga_738" reaction="R_GDPDPK">
+ <or>
+ <gene reference="STM2956"/>
+ <gene reference="STM3742"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_739" reaction="R_GDPMNH">
+ <gene reference="STM2107"/>
+ </geneAssociation>
+ <geneAssociation id="ga_740" reaction="R_GDPMNP">
+ <gene reference="STM2477"/>
+ </geneAssociation>
+ <geneAssociation id="ga_741" reaction="R_GDPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0999"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_742" reaction="R_GF6PTA">
+ <gene reference="STM3861"/>
+ </geneAssociation>
+ <geneAssociation id="ga_743" reaction="R_GHMT2r">
+ <gene reference="STM2555"/>
+ </geneAssociation>
+ <geneAssociation id="ga_744" reaction="R_GK1">
+ <gene reference="STM3740"/>
+ </geneAssociation>
+ <geneAssociation id="ga_745" reaction="R_GLBRAN2">
+ <gene reference="STM3538"/>
+ </geneAssociation>
+ <geneAssociation id="ga_746" reaction="R_GLCATr">
+ <gene reference="STM0472"/>
+ </geneAssociation>
+ <geneAssociation id="ga_747" reaction="R_GLCDpp">
+ <gene reference="STM0169"/>
+ </geneAssociation>
+ <geneAssociation id="ga_748" reaction="R_GLCNt2rpp">
+ <or>
+ <gene reference="STM3512"/>
+ <gene reference="STM4482"/>
+ <gene reference="STM3541"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_749" reaction="R_GLCNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_750" reaction="R_GLCP">
+ <or>
+ <gene reference="STM3534"/>
+ <gene reference="STM3514"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_751" reaction="R_GLCP2">
+ <or>
+ <gene reference="STM3514"/>
+ <gene reference="STM3534"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_752" reaction="R_GLCRAL">
+ <gene reference="STM3249"/>
+ </geneAssociation>
+ <geneAssociation id="ga_753" reaction="R_GLCRD">
+ <or>
+ <gene reference="STM2960"/>
+ <gene reference="STM2961"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_754" reaction="R_GLCRt2rpp">
+ <gene reference="STM2962"/>
+ </geneAssociation>
+ <geneAssociation id="ga_755" reaction="R_GLCRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_756" reaction="R_GLCS1">
+ <gene reference="STM3535"/>
+ </geneAssociation>
+ <geneAssociation id="ga_757" reaction="R_GLCTR1">
+ <gene reference="STM3722"/>
+ </geneAssociation>
+ <geneAssociation id="ga_758" reaction="R_GLCTR2">
+ <gene reference="STM3718"/>
+ </geneAssociation>
+ <geneAssociation id="ga_759" reaction="R_GLCTR3">
+ <gene reference="STM3717"/>
+ </geneAssociation>
+ <geneAssociation id="ga_760" reaction="R_GLCUR1Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_761" reaction="R_GLCURt2rpp">
+ <or>
+ <gene reference="STM3134"/>
+ <gene reference="STM0161"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_762" reaction="R_GLCURtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_763" reaction="R_GLCabcpp">
+ <and>
+ <gene reference="STM2189"/>
+ <gene reference="STM2190"/>
+ <gene reference="STM2188"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_764" reaction="R_GLCptspp">
+ <or>
+ <and>
+ <gene reference="STM2433"/>
+ <gene reference="STM1203"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ <and>
+ <gene reference="STM1830"/>
+ <gene reference="STM1831"/>
+ <gene reference="STM1832"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ <and>
+ <gene reference="STM2433"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_765" reaction="R_GLCt2pp">
+ <gene reference="STM3091"/>
+ </geneAssociation>
+ <geneAssociation id="ga_766" reaction="R_GLCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_767" reaction="R_GLCtexi">
+ <gene reference="STM4231"/>
+ </geneAssociation>
+ <geneAssociation id="ga_768" reaction="R_GLDBRAN2">
+ <gene reference="STM3537"/>
+ </geneAssociation>
+ <geneAssociation id="ga_769" reaction="R_GLGC">
+ <gene reference="STM3536"/>
+ </geneAssociation>
+ <geneAssociation id="ga_770" reaction="R_GLNS">
+ <gene reference="STM4007"/>
+ </geneAssociation>
+ <geneAssociation id="ga_771" reaction="R_GLNTRS">
+ <gene reference="STM0686"/>
+ </geneAssociation>
+ <geneAssociation id="ga_772" reaction="R_GLNabcpp">
+ <and>
+ <gene reference="STM0830"/>
+ <gene reference="STM0829"/>
+ <gene reference="STM0828"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_773" reaction="R_GLNtex">
+ <or>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_774" reaction="R_GLU5K">
+ <gene reference="STM0321"/>
+ </geneAssociation>
+ <geneAssociation id="ga_775" reaction="R_GLUCYS">
+ <gene reference="STM2818"/>
+ </geneAssociation>
+ <geneAssociation id="ga_776" reaction="R_GLUDy">
+ <gene reference="STM1299"/>
+ </geneAssociation>
+ <geneAssociation id="ga_777" reaction="R_GLUN">
+ <gene reference="STM1525"/>
+ </geneAssociation>
+ <geneAssociation id="ga_778" reaction="R_GLUNpp">
+ <gene reference="STM3106"/>
+ </geneAssociation>
+ <geneAssociation id="ga_779" reaction="R_GLUPRT">
+ <gene reference="STM2362"/>
+ </geneAssociation>
+ <geneAssociation id="ga_780" reaction="R_GLUR">
+ <gene reference="STM4131"/>
+ </geneAssociation>
+ <geneAssociation id="ga_781" reaction="R_GLUSy">
+ <and>
+ <gene reference="STM3330"/>
+ <gene reference="STM3331"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_782" reaction="R_GLUTRR">
+ <gene reference="STM1777"/>
+ </geneAssociation>
+ <geneAssociation id="ga_783" reaction="R_GLUTRS">
+ <gene reference="STM2415"/>
+ </geneAssociation>
+ <geneAssociation id="ga_784" reaction="R_GLUabcpp">
+ <and>
+ <gene reference="STM0665"/>
+ <gene reference="STM0664"/>
+ <gene reference="STM0663"/>
+ <gene reference="STM0662"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_785" reaction="R_GLUt2rpp">
+ <gene reference="STM4283"/>
+ </geneAssociation>
+ <geneAssociation id="ga_786" reaction="R_GLUt4pp">
+ <gene reference="STM3746"/>
+ </geneAssociation>
+ <geneAssociation id="ga_787" reaction="R_GLUtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_788" reaction="R_GLXCL">
+ <gene reference="STM0517"/>
+ </geneAssociation>
+ <geneAssociation id="ga_789" reaction="R_GLYALDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_790" reaction="R_GLYALDtpp">
+ <gene reference="STM4087"/>
+ </geneAssociation>
+ <geneAssociation id="ga_791" reaction="R_GLYAT">
+ <gene reference="STM3709"/>
+ </geneAssociation>
+ <geneAssociation id="ga_792" reaction="R_GLYBabcpp">
+ <and>
+ <gene reference="STM2162"/>
+ <gene reference="STM2163"/>
+ <gene reference="STM2164"/>
+ <gene reference="STM2165"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_793" reaction="R_GLYBtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_794" reaction="R_GLYC2Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_795" reaction="R_GLYC3Pabcpp">
+ <and>
+ <gene reference="STM3556"/>
+ <gene reference="STM3557"/>
+ <gene reference="STM3554"/>
+ <gene reference="STM3555"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_796" reaction="R_GLYC3Pt6pp">
+ <gene reference="STM2283"/>
+ </geneAssociation>
+ <geneAssociation id="ga_797" reaction="R_GLYC3Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_798" reaction="R_GLYCAt2rpp">
+ <gene reference="STM2962"/>
+ </geneAssociation>
+ <geneAssociation id="ga_799" reaction="R_GLYCAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_800" reaction="R_GLYCDx">
+ <or>
+ <gene reference="STM4108"/>
+ <gene reference="STM3529"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_801" reaction="R_GLYCK">
+ <or>
+ <gene reference="STM2959"/>
+ <gene reference="STM2492"/>
+ <gene reference="STM3247"/>
+ <gene reference="STM0525"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_802" reaction="R_GLYCK2">
+ <gene reference="STM3247"/>
+ </geneAssociation>
+ <geneAssociation id="ga_803" reaction="R_GLYCL">
+ <and>
+ <gene reference="STM3054"/>
+ <gene reference="STM3053"/>
+ <gene reference="STM3055"/>
+ <gene reference="STM0154"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_804" reaction="R_GLYCLTDx">
+ <or>
+ <gene reference="STM3646"/>
+ <gene reference="STM1135"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_805" reaction="R_GLYCLTDy">
+ <or>
+ <gene reference="STM3646"/>
+ <gene reference="STM1135"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_806" reaction="R_GLYCLTt2rpp">
+ <gene reference="STM3692"/>
+ </geneAssociation>
+ <geneAssociation id="ga_807" reaction="R_GLYCLTt4pp">
+ <gene reference="STM4273"/>
+ </geneAssociation>
+ <geneAssociation id="ga_808" reaction="R_GLYCLTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_809" reaction="R_GLYCTO2">
+ <gene reference="STM1620"/>
+ </geneAssociation>
+ <geneAssociation id="ga_810" reaction="R_GLYCTO3">
+ <gene reference="STM1620"/>
+ </geneAssociation>
+ <geneAssociation id="ga_811" reaction="R_GLYCTO4">
+ <gene reference="STM1620"/>
+ </geneAssociation>
+ <geneAssociation id="ga_812" reaction="R_GLYCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_813" reaction="R_GLYCtpp">
+ <or>
+ <gene reference="s0001"/>
+ <gene reference="STM4087"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_814" reaction="R_GLYK">
+ <gene reference="STM4086"/>
+ </geneAssociation>
+ <geneAssociation id="ga_815" reaction="R_GLYOX">
+ <gene reference="STM0261"/>
+ </geneAssociation>
+ <geneAssociation id="ga_816" reaction="R_GLYTRS">
+ <and>
+ <gene reference="STM3655"/>
+ <gene reference="STM3656"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_817" reaction="R_GLYt2pp">
+ <gene reference="STM4398"/>
+ </geneAssociation>
+ <geneAssociation id="ga_818" reaction="R_GLYtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_819" reaction="R_GMAND">
+ <gene reference="STM2109"/>
+ </geneAssociation>
+ <geneAssociation id="ga_820" reaction="R_GMHEPAT">
+ <gene reference="STM3200"/>
+ </geneAssociation>
+ <geneAssociation id="ga_821" reaction="R_GMHEPK">
+ <gene reference="STM3200"/>
+ </geneAssociation>
+ <geneAssociation id="ga_822" reaction="R_GMHEPPA">
+ <gene reference="STM0248"/>
+ </geneAssociation>
+ <geneAssociation id="ga_823" reaction="R_GMPR">
+ <gene reference="STM0141"/>
+ </geneAssociation>
+ <geneAssociation id="ga_824" reaction="R_GMPS2">
+ <gene reference="STM2510"/>
+ </geneAssociation>
+ <geneAssociation id="ga_825" reaction="R_GMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_826" reaction="R_GND">
+ <gene reference="STM2081"/>
+ </geneAssociation>
+ <geneAssociation id="ga_827" reaction="R_GNK">
+ <or>
+ <gene reference="STM4485"/>
+ <gene reference="STM3542"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_828" reaction="R_GOFUCR">
+ <gene reference="STM2108"/>
+ </geneAssociation>
+ <geneAssociation id="ga_829" reaction="R_GPDDA1">
+ <gene reference="STM3553"/>
+ </geneAssociation>
+ <geneAssociation id="ga_830" reaction="R_GPDDA1pp">
+ <gene reference="STM2282"/>
+ </geneAssociation>
+ <geneAssociation id="ga_831" reaction="R_GPDDA2">
+ <gene reference="STM3553"/>
+ </geneAssociation>
+ <geneAssociation id="ga_832" reaction="R_GPDDA2pp">
+ <gene reference="STM2282"/>
+ </geneAssociation>
+ <geneAssociation id="ga_833" reaction="R_GPDDA3">
+ <gene reference="STM3553"/>
+ </geneAssociation>
+ <geneAssociation id="ga_834" reaction="R_GPDDA3pp">
+ <gene reference="STM2282"/>
+ </geneAssociation>
+ <geneAssociation id="ga_835" reaction="R_GPDDA4">
+ <gene reference="STM3553"/>
+ </geneAssociation>
+ <geneAssociation id="ga_836" reaction="R_GPDDA4pp">
+ <gene reference="STM2282"/>
+ </geneAssociation>
+ <geneAssociation id="ga_837" reaction="R_GPDDA5">
+ <gene reference="STM3553"/>
+ </geneAssociation>
+ <geneAssociation id="ga_838" reaction="R_GPDDA5pp">
+ <gene reference="STM2282"/>
+ </geneAssociation>
+ <geneAssociation id="ga_839" reaction="R_GRTT">
+ <gene reference="STM0423"/>
+ </geneAssociation>
+ <geneAssociation id="ga_840" reaction="R_GRXR">
+ <or>
+ <gene reference="STM3702"/>
+ <gene reference="STM0872"/>
+ <gene reference="STM1433"/>
+ <gene reference="STM1165"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_841" reaction="R_GSNK">
+ <gene reference="STM0491"/>
+ </geneAssociation>
+ <geneAssociation id="ga_842" reaction="R_GSNt2pp">
+ <gene reference="STM3113"/>
+ </geneAssociation>
+ <geneAssociation id="ga_843" reaction="R_GSNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_844" reaction="R_GSPMDA">
+ <gene reference="STM3139"/>
+ </geneAssociation>
+ <geneAssociation id="ga_845" reaction="R_GSPMDS">
+ <gene reference="STM3139"/>
+ </geneAssociation>
+ <geneAssociation id="ga_846" reaction="R_GTHOXtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_847" reaction="R_GTHOr">
+ <gene reference="STM3597"/>
+ </geneAssociation>
+ <geneAssociation id="ga_848" reaction="R_GTHRDHpp">
+ <gene reference="STM3551"/>
+ </geneAssociation>
+ <geneAssociation id="ga_849" reaction="R_GTHRDabc2pp">
+ <and>
+ <gene reference="STM0956"/>
+ <gene reference="STM0957"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_850" reaction="R_GTHRDabcpp">
+ <and>
+ <gene reference="STM0848"/>
+ <gene reference="STM0849"/>
+ <gene reference="STM0850"/>
+ <gene reference="STM0851"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_851" reaction="R_GTHRDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_852" reaction="R_GTHS">
+ <gene reference="STM3095"/>
+ </geneAssociation>
+ <geneAssociation id="ga_853" reaction="R_GTPCI">
+ <gene reference="STM2193"/>
+ </geneAssociation>
+ <geneAssociation id="ga_854" reaction="R_GTPCII2">
+ <gene reference="STM1711"/>
+ </geneAssociation>
+ <geneAssociation id="ga_855" reaction="R_GTPDPDP">
+ <gene reference="STM3913"/>
+ </geneAssociation>
+ <geneAssociation id="ga_856" reaction="R_GTPDPK">
+ <gene reference="STM2956"/>
+ </geneAssociation>
+ <geneAssociation id="ga_857" reaction="R_GTPHs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_858" reaction="R_GTPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_859" reaction="R_GUAPRT">
+ <or>
+ <gene reference="STM0317"/>
+ <gene reference="STM0170"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_860" reaction="R_GUAt2pp">
+ <gene reference="STM3747"/>
+ </geneAssociation>
+ <geneAssociation id="ga_861" reaction="R_GUAtex">
+ <gene reference="STM0413"/>
+ </geneAssociation>
+ <geneAssociation id="ga_862" reaction="R_H2O2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_863" reaction="R_H2Otex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ <gene reference="s0001"/>
+ <gene reference="STM4016"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_864" reaction="R_H2Otpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_865" reaction="R_H2St1pp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_866" reaction="R_H2Stex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_867" reaction="R_H2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_868" reaction="R_H2tpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_869" reaction="R_HACD1i">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_870" reaction="R_HACD2i">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_871" reaction="R_HACD3i">
+ <or>
+ <gene reference="STM2388"/>
+ <gene reference="STM3983"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_872" reaction="R_HACD4i">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_873" reaction="R_HACD5i">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_874" reaction="R_HACD6i">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_875" reaction="R_HACD7i">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_876" reaction="R_HACD8i">
+ <or>
+ <gene reference="STM3983"/>
+ <gene reference="STM2388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_877" reaction="R_HBZOPT">
+ <gene reference="STM4234"/>
+ </geneAssociation>
+ <geneAssociation id="ga_878" reaction="R_HCINNMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_879" reaction="R_HCO3E">
+ <gene reference="STM0171"/>
+ </geneAssociation>
+ <geneAssociation id="ga_880" reaction="R_HDCAtexi">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_881" reaction="R_HDCEAtexi">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_882" reaction="R_HDCOAI">
+ <gene reference="STM3983"/>
+ </geneAssociation>
+ <geneAssociation id="ga_883" reaction="R_HEMEOS">
+ <gene reference="STM0439"/>
+ </geneAssociation>
+ <geneAssociation id="ga_884" reaction="R_HEPK1">
+ <gene reference="STM3721"/>
+ </geneAssociation>
+ <geneAssociation id="ga_885" reaction="R_HEPK2">
+ <gene reference="STM3716"/>
+ </geneAssociation>
+ <geneAssociation id="ga_886" reaction="R_HEPT1">
+ <gene reference="STM3712"/>
+ </geneAssociation>
+ <geneAssociation id="ga_887" reaction="R_HEPT2">
+ <gene reference="STM3711"/>
+ </geneAssociation>
+ <geneAssociation id="ga_888" reaction="R_HEPT3">
+ <gene reference="STM3723"/>
+ </geneAssociation>
+ <geneAssociation id="ga_889" reaction="R_HEPT4">
+ <gene reference="STM3714"/>
+ </geneAssociation>
+ <geneAssociation id="ga_890" reaction="R_HETZK">
+ <gene reference="STM2147"/>
+ </geneAssociation>
+ <geneAssociation id="ga_891" reaction="R_HEX1">
+ <gene reference="STM2403"/>
+ </geneAssociation>
+ <geneAssociation id="ga_892" reaction="R_HEX7">
+ <gene reference="STM0393"/>
+ </geneAssociation>
+ <geneAssociation id="ga_893" reaction="R_HG2abcpp">
+ <gene reference="STM3576"/>
+ </geneAssociation>
+ <geneAssociation id="ga_894" reaction="R_HG2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_895" reaction="R_HISTD">
+ <gene reference="STM2072"/>
+ </geneAssociation>
+ <geneAssociation id="ga_896" reaction="R_HISTP">
+ <gene reference="STM2074"/>
+ </geneAssociation>
+ <geneAssociation id="ga_897" reaction="R_HISTRS">
+ <gene reference="STM2522"/>
+ </geneAssociation>
+ <geneAssociation id="ga_898" reaction="R_HISabcpp">
+ <and>
+ <gene reference="STM2354"/>
+ <gene reference="STM2352"/>
+ <gene reference="STM2351"/>
+ <gene reference="STM2353"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_899" reaction="R_HISt2rpp">
+ <gene reference="STM0150"/>
+ </geneAssociation>
+ <geneAssociation id="ga_900" reaction="R_HIStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_901" reaction="R_HMBS">
+ <gene reference="STM3938"/>
+ </geneAssociation>
+ <geneAssociation id="ga_902" reaction="R_HMPK1">
+ <or>
+ <gene reference="STM2146"/>
+ <gene reference="STM2435"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_903" reaction="R_HOMt2pp">
+ <or>
+ <gene reference="STM0832"/>
+ <gene reference="STM3960"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_904" reaction="R_HOMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_905" reaction="R_HPPK2">
+ <gene reference="STM0183"/>
+ </geneAssociation>
+ <geneAssociation id="ga_906" reaction="R_HPPPNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_907" reaction="R_HPYRI">
+ <gene reference="STM0518"/>
+ </geneAssociation>
+ <geneAssociation id="ga_908" reaction="R_HPYRRx">
+ <or>
+ <gene reference="STM1135"/>
+ <gene reference="STM3646"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_909" reaction="R_HPYRRy">
+ <or>
+ <gene reference="STM3646"/>
+ <gene reference="STM1135"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_910" reaction="R_HSDy">
+ <or>
+ <gene reference="STM4101"/>
+ <gene reference="STM0002"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_911" reaction="R_HSK">
+ <gene reference="STM0003"/>
+ </geneAssociation>
+ <geneAssociation id="ga_912" reaction="R_HSST">
+ <gene reference="STM4182"/>
+ </geneAssociation>
+ <geneAssociation id="ga_913" reaction="R_HSTPT">
+ <gene reference="STM2073"/>
+ </geneAssociation>
+ <geneAssociation id="ga_914" reaction="R_HXAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_915" reaction="R_HXPRT">
+ <or>
+ <gene reference="STM0317"/>
+ <gene reference="STM0170"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_916" reaction="R_HYXNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_917" reaction="R_Htex">
+ <or>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_918" reaction="R_ICDHyr">
+ <gene reference="STM1238"/>
+ </geneAssociation>
+ <geneAssociation id="ga_919" reaction="R_ICHORS">
+ <gene reference="STM2310"/>
+ </geneAssociation>
+ <geneAssociation id="ga_920" reaction="R_ICHORSi">
+ <or>
+ <gene reference="STM0595"/>
+ <gene reference="STM2310"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_921" reaction="R_ICHORT">
+ <gene reference="STM0597"/>
+ </geneAssociation>
+ <geneAssociation id="ga_922" reaction="R_ICL">
+ <gene reference="STM4184"/>
+ </geneAssociation>
+ <geneAssociation id="ga_923" reaction="R_IDOND">
+ <gene reference="STM4484"/>
+ </geneAssociation>
+ <geneAssociation id="ga_924" reaction="R_IDOND2">
+ <gene reference="STM4484"/>
+ </geneAssociation>
+ <geneAssociation id="ga_925" reaction="R_IDONt2rpp">
+ <gene reference="STM4482"/>
+ </geneAssociation>
+ <geneAssociation id="ga_926" reaction="R_IDONtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_927" reaction="R_IG3PS">
+ <and>
+ <gene reference="STM2075"/>
+ <gene reference="STM2077"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_928" reaction="R_IGPDH">
+ <gene reference="STM2074"/>
+ </geneAssociation>
+ <geneAssociation id="ga_929" reaction="R_IGPS">
+ <gene reference="STM1725"/>
+ </geneAssociation>
+ <geneAssociation id="ga_930" reaction="R_ILETA">
+ <gene reference="STM3903"/>
+ </geneAssociation>
+ <geneAssociation id="ga_931" reaction="R_ILETRS">
+ <gene reference="STM0046"/>
+ </geneAssociation>
+ <geneAssociation id="ga_932" reaction="R_ILEabcpp">
+ <and>
+ <gene reference="STM3560"/>
+ <gene reference="STM3561"/>
+ <gene reference="STM3563"/>
+ <gene reference="STM3567"/>
+ <gene reference="STM3562"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_933" reaction="R_ILEt2rpp">
+ <gene reference="STM0399"/>
+ </geneAssociation>
+ <geneAssociation id="ga_934" reaction="R_ILEtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_935" reaction="R_IMPC">
+ <gene reference="STM4176"/>
+ </geneAssociation>
+ <geneAssociation id="ga_936" reaction="R_IMPD">
+ <gene reference="STM2511"/>
+ </geneAssociation>
+ <geneAssociation id="ga_937" reaction="R_IMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_938" reaction="R_INDOLEt2pp">
+ <and>
+ <gene reference="STM3390"/>
+ <gene reference="STM3391"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_939" reaction="R_INDOLEt2rpp">
+ <gene reference="STM3279"/>
+ </geneAssociation>
+ <geneAssociation id="ga_940" reaction="R_INDOLEtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_941" reaction="R_INSH">
+ <gene reference="STM0051"/>
+ </geneAssociation>
+ <geneAssociation id="ga_942" reaction="R_INSK">
+ <gene reference="STM0491"/>
+ </geneAssociation>
+ <geneAssociation id="ga_943" reaction="R_INSTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_944" reaction="R_INSt2pp">
+ <gene reference="STM3113"/>
+ </geneAssociation>
+ <geneAssociation id="ga_945" reaction="R_INSt2rpp">
+ <gene reference="STM2421"/>
+ </geneAssociation>
+ <geneAssociation id="ga_946" reaction="R_INStex">
+ <gene reference="STM0413"/>
+ </geneAssociation>
+ <geneAssociation id="ga_947" reaction="R_IPDDI">
+ <gene reference="STM3039"/>
+ </geneAssociation>
+ <geneAssociation id="ga_948" reaction="R_IPDPS">
+ <gene reference="STM0049"/>
+ </geneAssociation>
+ <geneAssociation id="ga_949" reaction="R_IPMD">
+ <gene reference="STM0112"/>
+ </geneAssociation>
+ <geneAssociation id="ga_950" reaction="R_IPPMIa">
+ <or>
+ <and>
+ <gene reference="STM0110"/>
+ <gene reference="STM0111"/>
+ </and>
+ <and>
+ <gene reference="STM0329"/>
+ <gene reference="STM0330"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_951" reaction="R_IPPMIb">
+ <or>
+ <and>
+ <gene reference="STM0110"/>
+ <gene reference="STM0111"/>
+ </and>
+ <and>
+ <gene reference="STM0329"/>
+ <gene reference="STM0330"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_952" reaction="R_IPPS">
+ <gene reference="STM0113"/>
+ </geneAssociation>
+ <geneAssociation id="ga_953" reaction="R_ISETACtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_954" reaction="R_K2L4Aabcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_955" reaction="R_KARA1">
+ <gene reference="STM3909"/>
+ </geneAssociation>
+ <geneAssociation id="ga_956" reaction="R_KARA2">
+ <gene reference="STM3909"/>
+ </geneAssociation>
+ <geneAssociation id="ga_957" reaction="R_KAS14">
+ <or>
+ <gene reference="STM2378"/>
+ <gene reference="STM1197"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_958" reaction="R_KAS15">
+ <gene reference="STM1193"/>
+ </geneAssociation>
+ <geneAssociation id="ga_959" reaction="R_KAT1">
+ <or>
+ <gene reference="STM2389"/>
+ <gene reference="STM3982"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_960" reaction="R_KAT2">
+ <or>
+ <gene reference="STM3982"/>
+ <gene reference="STM2389"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_961" reaction="R_KAT3">
+ <or>
+ <gene reference="STM2389"/>
+ <gene reference="STM3982"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_962" reaction="R_KAT4">
+ <or>
+ <gene reference="STM2389"/>
+ <gene reference="STM3982"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_963" reaction="R_KAT5">
+ <or>
+ <gene reference="STM2389"/>
+ <gene reference="STM3982"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_964" reaction="R_KAT6">
+ <or>
+ <gene reference="STM3982"/>
+ <gene reference="STM2389"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_965" reaction="R_KAT7">
+ <or>
+ <gene reference="STM3982"/>
+ <gene reference="STM2389"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_966" reaction="R_KAT8">
+ <or>
+ <gene reference="STM3982"/>
+ <gene reference="STM2389"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_967" reaction="R_KDOCT2">
+ <gene reference="STM0988"/>
+ </geneAssociation>
+ <geneAssociation id="ga_968" reaction="R_KDOPP">
+ <gene reference="STM3316"/>
+ </geneAssociation>
+ <geneAssociation id="ga_969" reaction="R_KDOPS">
+ <gene reference="STM1772"/>
+ </geneAssociation>
+ <geneAssociation id="ga_970" reaction="R_KG6PDC">
+ <or>
+ <gene reference="STM4386"/>
+ <gene reference="STM3675"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_971" reaction="R_Kabcpp">
+ <and>
+ <gene reference="STM0706"/>
+ <gene reference="STM0705"/>
+ <gene reference="STM0704"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_972" reaction="R_Kt2pp">
+ <or>
+ <gene reference="STM3880"/>
+ <and>
+ <gene reference="STM1695"/>
+ <gene reference="STM3409"/>
+ <gene reference="STM3986"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_973" reaction="R_Kt3pp">
+ <or>
+ <gene reference="STM3457"/>
+ <gene reference="STM0086"/>
+ <gene reference="STM1771"/>
+ <gene reference="STM0866"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_974" reaction="R_Ktex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_975" reaction="R_LA4NTpp">
+ <gene reference="STM2301"/>
+ </geneAssociation>
+ <geneAssociation id="ga_976" reaction="R_LADGMDH">
+ <gene reference="STM1680"/>
+ </geneAssociation>
+ <geneAssociation id="ga_977" reaction="R_LALDO2x">
+ <gene reference="STM4108"/>
+ </geneAssociation>
+ <geneAssociation id="ga_978" reaction="R_LALGP">
+ <gene reference="STM0316"/>
+ </geneAssociation>
+ <geneAssociation id="ga_979" reaction="R_LCARS">
+ <gene reference="STM2973"/>
+ </geneAssociation>
+ <geneAssociation id="ga_980" reaction="R_LCTStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_981" reaction="R_LDH_D">
+ <or>
+ <gene reference="STM2167"/>
+ <gene reference="STM1647"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_982" reaction="R_LDH_D2">
+ <gene reference="STM2167"/>
+ </geneAssociation>
+ <geneAssociation id="ga_983" reaction="R_LEUTAi">
+ <or>
+ <gene reference="STM3903"/>
+ <gene reference="STM4248"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_984" reaction="R_LEUTRS">
+ <gene reference="STM0648"/>
+ </geneAssociation>
+ <geneAssociation id="ga_985" reaction="R_LEUabcpp">
+ <or>
+ <and>
+ <gene reference="STM3560"/>
+ <gene reference="STM3561"/>
+ <gene reference="STM3563"/>
+ <gene reference="STM3567"/>
+ <gene reference="STM3562"/>
+ </and>
+ <and>
+ <gene reference="STM3560"/>
+ <gene reference="STM3561"/>
+ <gene reference="STM3563"/>
+ <gene reference="STM3564"/>
+ <gene reference="STM3562"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_986" reaction="R_LEUt2rpp">
+ <gene reference="STM0399"/>
+ </geneAssociation>
+ <geneAssociation id="ga_987" reaction="R_LEUtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_988" reaction="R_LGTHL">
+ <or>
+ <gene reference="STM1435"/>
+ <gene reference="STM0235"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_989" reaction="R_LIPACabcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_990" reaction="R_LIPAabcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_991" reaction="R_LPADSS">
+ <gene reference="STM0229"/>
+ </geneAssociation>
+ <geneAssociation id="ga_992" reaction="R_LPLIPAL1A120pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_993" reaction="R_LPLIPAL1A140pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_994" reaction="R_LPLIPAL1A141pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_995" reaction="R_LPLIPAL1A160pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_996" reaction="R_LPLIPAL1A161pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_997" reaction="R_LPLIPAL1A180pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_998" reaction="R_LPLIPAL1A181pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_999" reaction="R_LPLIPAL1E120pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1000" reaction="R_LPLIPAL1E140pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1001" reaction="R_LPLIPAL1E141pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1002" reaction="R_LPLIPAL1E160pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1003" reaction="R_LPLIPAL1E161pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1004" reaction="R_LPLIPAL1E180pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1005" reaction="R_LPLIPAL1E181pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1006" reaction="R_LPLIPAL1G120pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1007" reaction="R_LPLIPAL1G140pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1008" reaction="R_LPLIPAL1G141pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1009" reaction="R_LPLIPAL1G160pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1010" reaction="R_LPLIPAL1G161pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1011" reaction="R_LPLIPAL1G180pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1012" reaction="R_LPLIPAL1G181pp">
+ <gene reference="STM0506"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1013" reaction="R_LPLIPAL2A120">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1014" reaction="R_LPLIPAL2A140">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1015" reaction="R_LPLIPAL2A141">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1016" reaction="R_LPLIPAL2A160">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1017" reaction="R_LPLIPAL2A161">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1018" reaction="R_LPLIPAL2A180">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1019" reaction="R_LPLIPAL2A181">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1020" reaction="R_LPLIPAL2ATE120">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1021" reaction="R_LPLIPAL2ATE140">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1022" reaction="R_LPLIPAL2ATE141">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1023" reaction="R_LPLIPAL2ATE160">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1024" reaction="R_LPLIPAL2ATE161">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1025" reaction="R_LPLIPAL2ATE180">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1026" reaction="R_LPLIPAL2ATE181">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1027" reaction="R_LPLIPAL2ATG120">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1028" reaction="R_LPLIPAL2ATG140">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1029" reaction="R_LPLIPAL2ATG141">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1030" reaction="R_LPLIPAL2ATG160">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1031" reaction="R_LPLIPAL2ATG161">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1032" reaction="R_LPLIPAL2ATG180">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1033" reaction="R_LPLIPAL2ATG181">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1034" reaction="R_LPLIPAL2E120">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1035" reaction="R_LPLIPAL2E140">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1036" reaction="R_LPLIPAL2E141">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1037" reaction="R_LPLIPAL2E160">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1038" reaction="R_LPLIPAL2E161">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1039" reaction="R_LPLIPAL2E180">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1040" reaction="R_LPLIPAL2E181">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1041" reaction="R_LPLIPAL2G120">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1042" reaction="R_LPLIPAL2G140">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1043" reaction="R_LPLIPAL2G141">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1044" reaction="R_LPLIPAL2G160">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1045" reaction="R_LPLIPAL2G161">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1046" reaction="R_LPLIPAL2G180">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1047" reaction="R_LPLIPAL2G181">
+ <gene reference="STM3961"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1048" reaction="R_LSERDHr">
+ <gene reference="STM1511"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1049" reaction="R_LYSDC">
+ <or>
+ <gene reference="STM0234"/>
+ <gene reference="STM2559"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1050" reaction="R_LYSTRS">
+ <gene reference="STM3040"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1051" reaction="R_LYSabcpp">
+ <and>
+ <gene reference="STM2355"/>
+ <gene reference="STM2352"/>
+ <gene reference="STM2351"/>
+ <gene reference="STM2353"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1052" reaction="R_LYSt2pp">
+ <gene reference="STM2200"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1053" reaction="R_LYSt3pp">
+ <gene reference="STM3066"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1054" reaction="R_LYStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1055" reaction="R_LYXI">
+ <gene reference="STM4046"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1056" reaction="R_LYXt2pp">
+ <gene reference="STM4050"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1057" reaction="R_LYXtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1058" reaction="R_L_LACD2">
+ <gene reference="STM3694"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1059" reaction="R_L_LACD3">
+ <gene reference="STM3694"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1060" reaction="R_L_LACt2rpp">
+ <gene reference="STM3692"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1061" reaction="R_L_LACtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1062" reaction="R_M1PD">
+ <gene reference="STM3686"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1063" reaction="R_MACPD">
+ <gene reference="STM2378"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1064" reaction="R_MALDt2_2pp">
+ <gene reference="STM3614"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1065" reaction="R_MALDtex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1066" reaction="R_MALS">
+ <gene reference="STM4183"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1067" reaction="R_MALTATr">
+ <gene reference="STM0472"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1068" reaction="R_MALTHXabcpp">
+ <and>
+ <gene reference="STM4229"/>
+ <gene reference="STM4228"/>
+ <gene reference="STM4227"/>
+ <gene reference="STM4230"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1069" reaction="R_MALTHXtexi">
+ <gene reference="STM4231"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1070" reaction="R_MALTPTabcpp">
+ <and>
+ <gene reference="STM4229"/>
+ <gene reference="STM4228"/>
+ <gene reference="STM4227"/>
+ <gene reference="STM4230"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1071" reaction="R_MALTPTtexi">
+ <gene reference="STM4231"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1072" reaction="R_MALTTRabcpp">
+ <and>
+ <gene reference="STM4229"/>
+ <gene reference="STM4228"/>
+ <gene reference="STM4227"/>
+ <gene reference="STM4230"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1073" reaction="R_MALTTRtexi">
+ <gene reference="STM4231"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1074" reaction="R_MALTTTRabcpp">
+ <and>
+ <gene reference="STM4229"/>
+ <gene reference="STM4228"/>
+ <gene reference="STM4227"/>
+ <gene reference="STM4230"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1075" reaction="R_MALTTTRtexi">
+ <gene reference="STM4231"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1076" reaction="R_MALTabcpp">
+ <and>
+ <gene reference="STM4229"/>
+ <gene reference="STM4228"/>
+ <gene reference="STM4227"/>
+ <gene reference="STM4230"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1077" reaction="R_MALTptspp">
+ <and>
+ <gene reference="STM2433"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1078" reaction="R_MALTtexi">
+ <gene reference="STM4231"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1079" reaction="R_MALt2_2pp">
+ <gene reference="STM3614"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1080" reaction="R_MALtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1081" reaction="R_MAN6PI">
+ <gene reference="STM1467"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1082" reaction="R_MAN6Pt6_2pp">
+ <gene reference="STM3787"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1083" reaction="R_MAN6Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1084" reaction="R_MANGLYCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1085" reaction="R_MANptspp">
+ <and>
+ <gene reference="STM1830"/>
+ <gene reference="STM1831"/>
+ <gene reference="STM1832"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1086" reaction="R_MANtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1087" reaction="R_MCITD">
+ <gene reference="STM0370"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1088" reaction="R_MCITL2">
+ <gene reference="STM0368"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1089" reaction="R_MCITS">
+ <gene reference="STM0369"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1090" reaction="R_MCOATA">
+ <and>
+ <gene reference="STM1196"/>
+ <gene reference="STM1194"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1091" reaction="R_MCPST">
+ <gene reference="STM2533"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1092" reaction="R_MCTP1App">
+ <or>
+ <gene reference="STM0122"/>
+ <gene reference="STM0640"/>
+ <gene reference="STM0190"/>
+ <gene reference="STM3493"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1093" reaction="R_MCTP1Bpp">
+ <or>
+ <gene reference="STM0190"/>
+ <gene reference="STM3493"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1094" reaction="R_MCTP2App">
+ <or>
+ <gene reference="STM0122"/>
+ <gene reference="STM0640"/>
+ <gene reference="STM3493"/>
+ <gene reference="STM0190"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1095" reaction="R_MDDCP1pp">
+ <or>
+ <gene reference="STM0637"/>
+ <gene reference="STM3300"/>
+ <gene reference="STM0863"/>
+ <gene reference="STM2062"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1096" reaction="R_MDDCP2pp">
+ <or>
+ <gene reference="STM0637"/>
+ <gene reference="STM3300"/>
+ <gene reference="STM0863"/>
+ <gene reference="STM2062"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1097" reaction="R_MDDCP3pp">
+ <or>
+ <gene reference="STM0637"/>
+ <gene reference="STM3300"/>
+ <gene reference="STM0863"/>
+ <gene reference="STM2062"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1098" reaction="R_MDDCP4pp">
+ <or>
+ <gene reference="STM0637"/>
+ <gene reference="STM3300"/>
+ <gene reference="STM0863"/>
+ <gene reference="STM2062"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1099" reaction="R_MDDCP5pp">
+ <or>
+ <gene reference="STM0637"/>
+ <gene reference="STM3300"/>
+ <gene reference="STM0863"/>
+ <gene reference="STM2062"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1100" reaction="R_MDDEP1pp">
+ <or>
+ <gene reference="STM3300"/>
+ <gene reference="STM2383"/>
+ <gene reference="STM2168"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1101" reaction="R_MDDEP2pp">
+ <or>
+ <gene reference="STM3300"/>
+ <gene reference="STM2383"/>
+ <gene reference="STM2168"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1102" reaction="R_MDDEP3pp">
+ <or>
+ <gene reference="STM3300"/>
+ <gene reference="STM2383"/>
+ <gene reference="STM2168"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1103" reaction="R_MDDEP4pp">
+ <or>
+ <gene reference="STM3300"/>
+ <gene reference="STM2383"/>
+ <gene reference="STM2168"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1104" reaction="R_MDH">
+ <gene reference="STM3359"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1105" reaction="R_ME1">
+ <gene reference="STM1566"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1106" reaction="R_ME2">
+ <gene reference="STM2472"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1107" reaction="R_MECDPDH2">
+ <gene reference="STM2523"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1108" reaction="R_MECDPS">
+ <gene reference="STM2929"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1109" reaction="R_MELIBt2pp">
+ <gene reference="STM4299"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1110" reaction="R_MELIBt3ipp">
+ <gene reference="STM1522"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1111" reaction="R_MELIBtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1112" reaction="R_MEPCT">
+ <gene reference="STM2930"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1113" reaction="R_METAT">
+ <gene reference="STM3090"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1114" reaction="R_METDabcpp">
+ <and>
+ <gene reference="STM0246"/>
+ <gene reference="STM0247"/>
+ <gene reference="STM0245"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1115" reaction="R_METDtex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1116" reaction="R_METOX1s">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1117" reaction="R_METOX2s">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1118" reaction="R_METS">
+ <or>
+ <gene reference="STM4188.S"/>
+ <gene reference="STM3965"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1119" reaction="R_METSOX1tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1120" reaction="R_METSOX2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1121" reaction="R_METSOXR1">
+ <or>
+ <and>
+ <gene reference="STM4408"/>
+ <gene reference="STM2649"/>
+ </and>
+ <and>
+ <gene reference="STM4408"/>
+ <gene reference="STM3915"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1122" reaction="R_METSOXR2">
+ <or>
+ <and>
+ <gene reference="STM1291"/>
+ <gene reference="STM2649"/>
+ </and>
+ <and>
+ <gene reference="STM1291"/>
+ <gene reference="STM3915"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1123" reaction="R_METTRS">
+ <gene reference="STM2155"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1124" reaction="R_METabcpp">
+ <and>
+ <gene reference="STM0246"/>
+ <gene reference="STM0247"/>
+ <gene reference="STM0245"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1125" reaction="R_METtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1126" reaction="R_MG2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1127" reaction="R_MG2tpp">
+ <gene reference="STM3952"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1128" reaction="R_MGSA">
+ <gene reference="STM1076"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1129" reaction="R_MI1PP">
+ <gene reference="STM2546"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1130" reaction="R_MICITD">
+ <gene reference="STM0158"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1131" reaction="R_MLTG1">
+ <gene reference="STM0401"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1132" reaction="R_MLTG2">
+ <gene reference="STM0401"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1133" reaction="R_MLTG3">
+ <gene reference="STM0401"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1134" reaction="R_MLTG4">
+ <gene reference="STM0401"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1135" reaction="R_MLTG5">
+ <gene reference="STM0401"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1136" reaction="R_MLTGY1pp">
+ <or>
+ <gene reference="STM4582"/>
+ <gene reference="STM2988"/>
+ <gene reference="STM2831"/>
+ <gene reference="STM1799"/>
+ <gene reference="STM3112"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1137" reaction="R_MLTGY2pp">
+ <or>
+ <gene reference="STM4582"/>
+ <gene reference="STM2988"/>
+ <gene reference="STM2831"/>
+ <gene reference="STM1799"/>
+ <gene reference="STM3112"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1138" reaction="R_MLTGY3pp">
+ <or>
+ <gene reference="STM4582"/>
+ <gene reference="STM2988"/>
+ <gene reference="STM2831"/>
+ <gene reference="STM1799"/>
+ <gene reference="STM3112"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1139" reaction="R_MLTGY4pp">
+ <or>
+ <gene reference="STM4582"/>
+ <gene reference="STM2988"/>
+ <gene reference="STM2831"/>
+ <gene reference="STM1799"/>
+ <gene reference="STM3112"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1140" reaction="R_MLTP1">
+ <gene reference="STM3514"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1141" reaction="R_MLTP2">
+ <gene reference="STM3514"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1142" reaction="R_MLTP3">
+ <gene reference="STM3514"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1143" reaction="R_MMETtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1144" reaction="R_MN2t3pp">
+ <or>
+ <gene reference="STM4061"/>
+ <gene reference="STM0758"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1145" reaction="R_MN2tpp">
+ <gene reference="STM3190"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1146" reaction="R_MN6PP">
+ <or>
+ <gene reference="STM0840"/>
+ <gene reference="STM0842"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1147" reaction="R_MNLptspp">
+ <and>
+ <gene reference="STM3685"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1148" reaction="R_MNLtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1149" reaction="R_MNt2pp">
+ <gene reference="STM2408"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1150" reaction="R_MNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1151" reaction="R_MOAT">
+ <gene reference="STM3724"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1152" reaction="R_MOAT2">
+ <gene reference="STM3724"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1153" reaction="R_MOAT3C">
+ <gene reference="STM3715"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1154" reaction="R_MOBDabcpp">
+ <or>
+ <and>
+ <gene reference="STM2441"/>
+ <gene reference="STM2444"/>
+ <gene reference="STM2443"/>
+ <gene reference="STM2442"/>
+ </and>
+ <and>
+ <gene reference="STM0781"/>
+ <gene reference="STM0782"/>
+ <gene reference="STM0783"/>
+ </and>
+ <and>
+ <gene reference="STM2441"/>
+ <gene reference="STM2443"/>
+ <gene reference="STM2442"/>
+ <gene reference="STM4063"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1155" reaction="R_MOBDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1156" reaction="R_MOHMT">
+ <gene reference="STM0182"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1157" reaction="R_MPTG">
+ <or>
+ <gene reference="STM2531"/>
+ <gene reference="STM0190"/>
+ <gene reference="STM3493"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1158" reaction="R_MPTG2">
+ <or>
+ <gene reference="STM0190"/>
+ <gene reference="STM2531"/>
+ <gene reference="STM3493"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1159" reaction="R_MSO3tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1160" reaction="R_MTAN">
+ <gene reference="STM0207"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1161" reaction="R_MTHFC">
+ <gene reference="STM0542"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1162" reaction="R_MTHFD">
+ <gene reference="STM0542"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1163" reaction="R_MTHFR2">
+ <gene reference="STM4105"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1164" reaction="R_MTRPOX">
+ <gene reference="STM1160"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1165" reaction="R_N2Otex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1166" reaction="R_N2Otpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1167" reaction="R_NACODA">
+ <gene reference="STM4120"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1168" reaction="R_NACtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1169" reaction="R_NADDP">
+ <or>
+ <gene reference="STM2427"/>
+ <gene reference="STM4166"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1170" reaction="R_NADH10">
+ <gene reference="STM1211"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1171" reaction="R_NADH16pp">
+ <and>
+ <gene reference="STM2316.S"/>
+ <gene reference="STM2317"/>
+ <gene reference="STM2318"/>
+ <gene reference="STM2319"/>
+ <gene reference="STM2320"/>
+ <gene reference="STM2321"/>
+ <gene reference="STM2322"/>
+ <gene reference="STM2323.S"/>
+ <gene reference="STM2324"/>
+ <gene reference="STM2325"/>
+ <gene reference="STM2326"/>
+ <gene reference="STM2327"/>
+ <gene reference="STM2328"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1172" reaction="R_NADH17pp">
+ <and>
+ <gene reference="STM2316.S"/>
+ <gene reference="STM2317"/>
+ <gene reference="STM2318"/>
+ <gene reference="STM2319"/>
+ <gene reference="STM2320"/>
+ <gene reference="STM2321"/>
+ <gene reference="STM2322"/>
+ <gene reference="STM2323.S"/>
+ <gene reference="STM2324"/>
+ <gene reference="STM2325"/>
+ <gene reference="STM2326"/>
+ <gene reference="STM2327"/>
+ <gene reference="STM2328"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1173" reaction="R_NADH18pp">
+ <and>
+ <gene reference="STM2316.S"/>
+ <gene reference="STM2317"/>
+ <gene reference="STM2318"/>
+ <gene reference="STM2319"/>
+ <gene reference="STM2320"/>
+ <gene reference="STM2321"/>
+ <gene reference="STM2322"/>
+ <gene reference="STM2323.S"/>
+ <gene reference="STM2324"/>
+ <gene reference="STM2325"/>
+ <gene reference="STM2326"/>
+ <gene reference="STM2327"/>
+ <gene reference="STM2328"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1174" reaction="R_NADH5">
+ <gene reference="STM1211"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1175" reaction="R_NADH9">
+ <gene reference="STM1211"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1176" reaction="R_NADK">
+ <gene reference="STM2683"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1177" reaction="R_NADPHQR2">
+ <gene reference="STM3179"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1178" reaction="R_NADPHQR3">
+ <gene reference="STM3179"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1179" reaction="R_NADPHQR4">
+ <gene reference="STM3179"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1180" reaction="R_NADS1">
+ <gene reference="STM1310"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1181" reaction="R_NADTRHD">
+ <or>
+ <gene reference="STM4126"/>
+ <and>
+ <gene reference="STM1480"/>
+ <gene reference="STM1479"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1182" reaction="R_NAMNPP">
+ <gene reference="STM1004"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1183" reaction="R_NAt3_1p5pp">
+ <gene reference="STM1806"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1184" reaction="R_NAt3_2pp">
+ <gene reference="STM0039"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1185" reaction="R_NAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1186" reaction="R_NDPK1">
+ <or>
+ <gene reference="STM0488"/>
+ <gene reference="STM2526"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1187" reaction="R_NDPK2">
+ <or>
+ <gene reference="STM0488"/>
+ <gene reference="STM2526"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1188" reaction="R_NDPK3">
+ <or>
+ <gene reference="STM0488"/>
+ <gene reference="STM2526"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1189" reaction="R_NDPK4">
+ <or>
+ <gene reference="STM2526"/>
+ <gene reference="STM0488"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1190" reaction="R_NDPK5">
+ <or>
+ <gene reference="STM2526"/>
+ <gene reference="STM0488"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1191" reaction="R_NDPK6">
+ <or>
+ <gene reference="STM0488"/>
+ <gene reference="STM2526"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1192" reaction="R_NDPK7">
+ <or>
+ <gene reference="STM2526"/>
+ <gene reference="STM0488"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1193" reaction="R_NDPK8">
+ <or>
+ <gene reference="STM2526"/>
+ <gene reference="STM0488"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1194" reaction="R_NH4tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1195" reaction="R_NH4tpp">
+ <or>
+ <gene reference="s0001"/>
+ <gene reference="STM0463"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1196" reaction="R_NHFRBO">
+ <and>
+ <gene reference="STM2840"/>
+ <gene reference="STM2841"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1197" reaction="R_NI2abcpp">
+ <gene reference="STM3576"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1198" reaction="R_NI2t3pp">
+ <or>
+ <gene reference="STM4061"/>
+ <gene reference="STM0758"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1199" reaction="R_NI2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1200" reaction="R_NMNAT">
+ <or>
+ <gene reference="STM0645"/>
+ <gene reference="STM4580.S"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1201" reaction="R_NMNPtpp">
+ <gene reference="STM0757"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1202" reaction="R_NMNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1203" reaction="R_NNAM">
+ <gene reference="STM1293"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1204" reaction="R_NNATr">
+ <gene reference="STM0645"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1205" reaction="R_NNDPR">
+ <gene reference="STM0145"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1206" reaction="R_NO2t2rpp">
+ <or>
+ <gene reference="STM1765"/>
+ <gene reference="STM3476"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1207" reaction="R_NO2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1208" reaction="R_NO3R1bpp">
+ <and>
+ <gene reference="STM2256"/>
+ <gene reference="STM2259"/>
+ <gene reference="STM2255"/>
+ <gene reference="STM2258"/>
+ <gene reference="STM2257"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1209" reaction="R_NO3R1pp">
+ <or>
+ <and>
+ <gene reference="STM1580"/>
+ <gene reference="STM1579"/>
+ <gene reference="STM1578"/>
+ <gene reference="STM1577"/>
+ </and>
+ <and>
+ <gene reference="STM1764"/>
+ <gene reference="STM1763"/>
+ <gene reference="STM1762"/>
+ <gene reference="STM1761"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1210" reaction="R_NO3R2bpp">
+ <and>
+ <gene reference="STM2255"/>
+ <gene reference="STM2256"/>
+ <gene reference="STM2259"/>
+ <gene reference="STM2260"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1211" reaction="R_NO3R2pp">
+ <or>
+ <and>
+ <gene reference="STM1580"/>
+ <gene reference="STM1579"/>
+ <gene reference="STM1578"/>
+ <gene reference="STM1577"/>
+ </and>
+ <and>
+ <gene reference="STM1764"/>
+ <gene reference="STM1763"/>
+ <gene reference="STM1762"/>
+ <gene reference="STM1761"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1212" reaction="R_NO3t7pp">
+ <or>
+ <gene reference="STM1765"/>
+ <gene reference="STM1576"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1213" reaction="R_NO3tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM1473"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1214" reaction="R_NODOx">
+ <gene reference="STM2556"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1215" reaction="R_NODOy">
+ <gene reference="STM2556"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1216" reaction="R_NOtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1217" reaction="R_NOtpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1218" reaction="R_NPHS">
+ <gene reference="STM2307"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1219" reaction="R_NTD1">
+ <or>
+ <gene reference="STM2332"/>
+ <gene reference="STM2927"/>
+ <gene reference="STM4559.S"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1220" reaction="R_NTD10">
+ <gene reference="STM2927"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1221" reaction="R_NTD10pp">
+ <or>
+ <gene reference="STM0494"/>
+ <gene reference="STM4249"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1222" reaction="R_NTD11">
+ <gene reference="STM2927"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1223" reaction="R_NTD11pp">
+ <or>
+ <gene reference="STM4249"/>
+ <gene reference="STM0494"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1224" reaction="R_NTD12">
+ <or>
+ <gene reference="STM2332"/>
+ <gene reference="STM2927"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1225" reaction="R_NTD12pp">
+ <or>
+ <gene reference="STM0494"/>
+ <gene reference="STM4249"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1226" reaction="R_NTD1pp">
+ <or>
+ <gene reference="STM0494"/>
+ <gene reference="STM4249"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1227" reaction="R_NTD2">
+ <or>
+ <gene reference="STM4559.S"/>
+ <gene reference="STM2927"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1228" reaction="R_NTD2pp">
+ <or>
+ <gene reference="STM4249"/>
+ <gene reference="STM0494"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1229" reaction="R_NTD3">
+ <or>
+ <gene reference="STM2927"/>
+ <gene reference="STM2332"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1230" reaction="R_NTD3pp">
+ <or>
+ <gene reference="STM0494"/>
+ <gene reference="STM4249"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1231" reaction="R_NTD4">
+ <gene reference="STM2927"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1232" reaction="R_NTD4pp">
+ <or>
+ <gene reference="STM4249"/>
+ <gene reference="STM0494"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1233" reaction="R_NTD5">
+ <or>
+ <gene reference="STM2332"/>
+ <gene reference="STM2927"/>
+ <gene reference="STM4559.S"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1234" reaction="R_NTD5pp">
+ <or>
+ <gene reference="STM0494"/>
+ <gene reference="STM4249"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1235" reaction="R_NTD6">
+ <or>
+ <gene reference="STM2332"/>
+ <gene reference="STM2927"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1236" reaction="R_NTD6pp">
+ <or>
+ <gene reference="STM4249"/>
+ <gene reference="STM0494"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1237" reaction="R_NTD7">
+ <gene reference="STM2927"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1238" reaction="R_NTD7pp">
+ <or>
+ <gene reference="STM0494"/>
+ <gene reference="STM4249"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1239" reaction="R_NTD8">
+ <or>
+ <gene reference="STM2332"/>
+ <gene reference="STM2927"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1240" reaction="R_NTD8pp">
+ <or>
+ <gene reference="STM0494"/>
+ <gene reference="STM4249"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1241" reaction="R_NTD9">
+ <gene reference="STM2927"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1242" reaction="R_NTD9pp">
+ <or>
+ <gene reference="STM4249"/>
+ <gene reference="STM0494"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1243" reaction="R_NTP1">
+ <or>
+ <gene reference="STM0659"/>
+ <gene reference="STM4349"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1244" reaction="R_NTP10">
+ <or>
+ <gene reference="STM4584"/>
+ <gene reference="STM4349"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1245" reaction="R_NTP11">
+ <gene reference="STM4584"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1246" reaction="R_NTP12">
+ <gene reference="STM4584"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1247" reaction="R_NTP3">
+ <gene reference="STM4349"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1248" reaction="R_NTP5">
+ <gene reference="STM4349"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1249" reaction="R_NTPP1">
+ <or>
+ <gene reference="STM2954"/>
+ <gene reference="STM0137"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1250" reaction="R_NTPP10">
+ <gene reference="STM3103"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1251" reaction="R_NTPP11">
+ <gene reference="STM3103"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1252" reaction="R_NTPP2">
+ <or>
+ <gene reference="STM0137"/>
+ <gene reference="STM2954"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1253" reaction="R_NTPP3">
+ <or>
+ <gene reference="STM2954"/>
+ <gene reference="STM2295"/>
+ <gene reference="STM1301"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1254" reaction="R_NTPP4">
+ <or>
+ <gene reference="STM2954"/>
+ <gene reference="STM1301"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1255" reaction="R_NTPP5">
+ <or>
+ <gene reference="STM2954"/>
+ <gene reference="STM1900"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1256" reaction="R_NTPP6">
+ <gene reference="STM2954"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1257" reaction="R_NTPP7">
+ <or>
+ <gene reference="STM2295"/>
+ <gene reference="STM2954"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1258" reaction="R_NTPP8">
+ <gene reference="STM2954"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1259" reaction="R_NTPP9">
+ <gene reference="STM3103"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1260" reaction="R_NTPTP1">
+ <gene reference="STM0208"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1261" reaction="R_NTPTP2">
+ <gene reference="STM0208"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1262" reaction="R_NTRIR2x">
+ <and>
+ <gene reference="STM3474"/>
+ <gene reference="STM3475"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1263" reaction="R_NTRIR3pp">
+ <and>
+ <gene reference="STM4277"/>
+ <gene reference="STM4278.S"/>
+ <gene reference="STM4279"/>
+ <gene reference="STM4280"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1264" reaction="R_NTRIR4pp">
+ <and>
+ <gene reference="STM4277"/>
+ <gene reference="STM4278.S"/>
+ <gene reference="STM4279"/>
+ <gene reference="STM4280"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1265" reaction="R_O2Stex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1266" reaction="R_O2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1267" reaction="R_O2tpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1268" reaction="R_OAADC">
+ <gene reference="STM1884"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1269" reaction="R_OBTFL">
+ <or>
+ <and>
+ <gene reference="STM0970"/>
+ <gene reference="STM0973"/>
+ <gene reference="STM2646"/>
+ </and>
+ <and>
+ <gene reference="STM0970"/>
+ <gene reference="STM0973"/>
+ </and>
+ <and>
+ <gene reference="STM0970"/>
+ <gene reference="STM3241"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1270" reaction="R_OCDCAtexi">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1271" reaction="R_OCDCEAtexi">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1272" reaction="R_OCTAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1273" reaction="R_OCTDPS">
+ <gene reference="STM3305"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1274" reaction="R_ODECOAI">
+ <gene reference="STM3983"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1275" reaction="R_OHPBAT">
+ <gene reference="STM0977"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1276" reaction="R_OHPHM">
+ <gene reference="STM2276"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1277" reaction="R_OMBZLM">
+ <gene reference="STM3970"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1278" reaction="R_OMCDC">
+ <gene reference="STM0112"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1279" reaction="R_OMMBLHX">
+ <gene reference="STM0671"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1280" reaction="R_OMPDC">
+ <gene reference="STM1707"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1281" reaction="R_OMPHHX">
+ <gene reference="STM3057"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1282" reaction="R_OPHBDC">
+ <or>
+ <gene reference="STM3978"/>
+ <gene reference="STM2356"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1283" reaction="R_OPHHX">
+ <gene reference="STM3972"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1284" reaction="R_ORNDC">
+ <or>
+ <gene reference="STM3114"/>
+ <gene reference="STM0701"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1285" reaction="R_ORNabcpp">
+ <and>
+ <gene reference="STM2355"/>
+ <gene reference="STM2352"/>
+ <gene reference="STM2351"/>
+ <gene reference="STM2353"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1286" reaction="R_ORNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1287" reaction="R_OROTt2_2pp">
+ <gene reference="STM3614"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1288" reaction="R_OAAt2_2pp">
+ <gene reference="STM3614"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1289" reaction="R_OROTtex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1290" reaction="R_OAAtex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1291" reaction="R_ORPT">
+ <gene reference="STM3733"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1292" reaction="R_OXGDC2">
+ <gene reference="STM2309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1293" reaction="R_P5CD">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1294" reaction="R_P5CR">
+ <gene reference="STM0386"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1295" reaction="R_PA120abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1296" reaction="R_PA140abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1297" reaction="R_PA141abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1298" reaction="R_PA160abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1299" reaction="R_PA161abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1300" reaction="R_PA180abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1301" reaction="R_PA181abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1302" reaction="R_PACALDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1303" reaction="R_PANTS">
+ <gene reference="STM0181"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1304" reaction="R_PAPA120">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1305" reaction="R_PAPA120pp">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1306" reaction="R_PAPA140">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1307" reaction="R_PAPA140pp">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1308" reaction="R_PAPA141">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1309" reaction="R_PAPA141pp">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1310" reaction="R_PAPA160">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1311" reaction="R_PAPA160pp">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1312" reaction="R_PAPA161">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1313" reaction="R_PAPA161pp">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1314" reaction="R_PAPA180">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1315" reaction="R_PAPA180pp">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1316" reaction="R_PAPA181">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1317" reaction="R_PAPA181pp">
+ <gene reference="STM1710"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1318" reaction="R_PAPPT3">
+ <gene reference="STM0125"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1319" reaction="R_PAPSR">
+ <or>
+ <and>
+ <gene reference="STM2946"/>
+ <gene reference="STM2649"/>
+ </and>
+ <and>
+ <gene reference="STM2946"/>
+ <gene reference="STM3915"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1320" reaction="R_PAPSR2">
+ <or>
+ <and>
+ <gene reference="STM2946"/>
+ <gene reference="STM0872"/>
+ </and>
+ <and>
+ <gene reference="STM2946"/>
+ <gene reference="STM1165"/>
+ </and>
+ <and>
+ <gene reference="STM2946"/>
+ <gene reference="STM1433"/>
+ </and>
+ <and>
+ <gene reference="STM2946"/>
+ <gene reference="STM3702"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1321" reaction="R_PDH">
+ <and>
+ <gene reference="STM0152"/>
+ <gene reference="STM0153"/>
+ <gene reference="STM0154"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1322" reaction="R_PDX5POi">
+ <gene reference="STM1448"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1323" reaction="R_PDX5PS">
+ <and>
+ <or>
+ <gene reference="STM0091"/>
+ <gene reference="STM0163"/>
+ </or>
+ <gene reference="STM2578"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1324" reaction="R_PE120abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1325" reaction="R_PE140abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1326" reaction="R_PE141abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1327" reaction="R_PE160abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1328" reaction="R_PE161abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1329" reaction="R_PE180abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1330" reaction="R_PE181abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1331" reaction="R_PEAMNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1332" reaction="R_PERD">
+ <gene reference="STM2370"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1333" reaction="R_PETNT161pp">
+ <gene reference="STM3635"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1334" reaction="R_PETNT181pp">
+ <gene reference="STM3635"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1335" reaction="R_PFK">
+ <or>
+ <gene reference="STM4062"/>
+ <gene reference="STM1326"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1336" reaction="R_PFK_2">
+ <or>
+ <gene reference="STM4062"/>
+ <gene reference="STM3257"/>
+ <gene reference="STM1326"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1337" reaction="R_PFL">
+ <or>
+ <and>
+ <gene reference="STM0970"/>
+ <gene reference="STM0973"/>
+ </and>
+ <and>
+ <gene reference="STM0970"/>
+ <gene reference="STM3241"/>
+ </and>
+ <and>
+ <gene reference="STM4114"/>
+ <gene reference="STM4115"/>
+ </and>
+ <and>
+ <gene reference="STM0843"/>
+ <gene reference="STM0844"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1338" reaction="R_PG120abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1339" reaction="R_PG140abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1340" reaction="R_PG141abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1341" reaction="R_PG160abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1342" reaction="R_PG161abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1343" reaction="R_PG180abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1344" reaction="R_PG181abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1345" reaction="R_PGAMT">
+ <gene reference="STM3294"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1346" reaction="R_PGCD">
+ <gene reference="STM3062"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1347" reaction="R_PGI">
+ <gene reference="STM4221"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1348" reaction="R_PGK">
+ <gene reference="STM3069"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1349" reaction="R_PGL">
+ <gene reference="STM0785"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1350" reaction="R_PGLYCP">
+ <gene reference="STM3482"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1351" reaction="R_PGM">
+ <or>
+ <gene reference="STM3704"/>
+ <gene reference="STM4585"/>
+ <gene reference="STM0772"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1352" reaction="R_PGMT">
+ <or>
+ <gene reference="STM0698"/>
+ <gene reference="STM2820"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1353" reaction="R_PGP120abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1354" reaction="R_PGP140abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1355" reaction="R_PGP141abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1356" reaction="R_PGP160abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1357" reaction="R_PGP161abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1358" reaction="R_PGP180abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1359" reaction="R_PGP181abcpp">
+ <gene reference="STM0984"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1360" reaction="R_PGPP120">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1361" reaction="R_PGPP120pp">
+ <or>
+ <gene reference="STM1710"/>
+ <gene reference="STM0420"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1362" reaction="R_PGPP140">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1363" reaction="R_PGPP140pp">
+ <or>
+ <gene reference="STM1710"/>
+ <gene reference="STM0420"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1364" reaction="R_PGPP141">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1365" reaction="R_PGPP141pp">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1366" reaction="R_PGPP160">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1367" reaction="R_PGPP160pp">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1368" reaction="R_PGPP161">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1369" reaction="R_PGPP161pp">
+ <or>
+ <gene reference="STM1710"/>
+ <gene reference="STM0420"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1370" reaction="R_PGPP180">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1371" reaction="R_PGPP180pp">
+ <or>
+ <gene reference="STM1710"/>
+ <gene reference="STM0420"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1372" reaction="R_PGPP181">
+ <or>
+ <gene reference="STM1710"/>
+ <gene reference="STM0420"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1373" reaction="R_PGPP181pp">
+ <or>
+ <gene reference="STM0420"/>
+ <gene reference="STM1710"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1374" reaction="R_PGSA120">
+ <gene reference="STM1945"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1375" reaction="R_PGSA140">
+ <gene reference="STM1945"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1376" reaction="R_PGSA141">
+ <gene reference="STM1945"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1377" reaction="R_PGSA160">
+ <gene reference="STM1945"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1378" reaction="R_PGSA161">
+ <gene reference="STM1945"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1379" reaction="R_PGSA180">
+ <gene reference="STM1945"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1380" reaction="R_PGSA181">
+ <gene reference="STM1945"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1381" reaction="R_PHEMEabcpp">
+ <and>
+ <gene reference="STM2254"/>
+ <gene reference="STM2253"/>
+ <gene reference="STM2252"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1382" reaction="R_PHETA1">
+ <or>
+ <gene reference="STM3903"/>
+ <gene reference="STM0998"/>
+ <gene reference="STM4248"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1383" reaction="R_PHETRS">
+ <and>
+ <gene reference="STM1338"/>
+ <gene reference="STM1337"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1384" reaction="R_PHEt2rpp">
+ <or>
+ <gene reference="STM0568"/>
+ <gene reference="STM0150"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1385" reaction="R_PHEtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1386" reaction="R_PIt2rpp">
+ <gene reference="STM3589"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1387" reaction="R_PItex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1388" reaction="R_PIuabcpp">
+ <and>
+ <gene reference="STM3855"/>
+ <gene reference="STM3854"/>
+ <gene reference="STM3856"/>
+ <gene reference="STM3857"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1389" reaction="R_PLIPA1A120pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1390" reaction="R_PLIPA1A140pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1391" reaction="R_PLIPA1A141pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1392" reaction="R_PLIPA1A160pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1393" reaction="R_PLIPA1A161pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1394" reaction="R_PLIPA1A180pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1395" reaction="R_PLIPA1A181pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1396" reaction="R_PLIPA1E120pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1397" reaction="R_PLIPA1E140pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1398" reaction="R_PLIPA1E141pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1399" reaction="R_PLIPA1E160pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1400" reaction="R_PLIPA1E161pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1401" reaction="R_PLIPA1E180pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1402" reaction="R_PLIPA1E181pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1403" reaction="R_PLIPA1G120pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1404" reaction="R_PLIPA1G140pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1405" reaction="R_PLIPA1G141pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1406" reaction="R_PLIPA1G160pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1407" reaction="R_PLIPA1G161pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1408" reaction="R_PLIPA1G180pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1409" reaction="R_PLIPA1G181pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1410" reaction="R_PLIPA2A120pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1411" reaction="R_PLIPA2A140pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1412" reaction="R_PLIPA2A141pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1413" reaction="R_PLIPA2A160pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1414" reaction="R_PLIPA2A161pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1415" reaction="R_PLIPA2A180pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1416" reaction="R_PLIPA2A181pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1417" reaction="R_PLIPA2E120pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1418" reaction="R_PLIPA2E140pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1419" reaction="R_PLIPA2E141pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1420" reaction="R_PLIPA2E160pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1421" reaction="R_PLIPA2E161pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1422" reaction="R_PLIPA2E180pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1423" reaction="R_PLIPA2E181pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1424" reaction="R_PLIPA2G120pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1425" reaction="R_PLIPA2G140pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1426" reaction="R_PLIPA2G141pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1427" reaction="R_PLIPA2G160pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1428" reaction="R_PLIPA2G161pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1429" reaction="R_PLIPA2G180pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1430" reaction="R_PLIPA2G181pp">
+ <gene reference="STM3957"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1431" reaction="R_PMPK">
+ <gene reference="STM2146"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1432" reaction="R_PNTK">
+ <gene reference="STM4139"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1433" reaction="R_PNTOt4pp">
+ <gene reference="STM3382"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1434" reaction="R_PNTOtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1435" reaction="R_POX">
+ <gene reference="STM0935"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1436" reaction="R_PPA">
+ <or>
+ <gene reference="STM4414"/>
+ <gene reference="STM2502"/>
+ <gene reference="STM2927"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1437" reaction="R_PPA2">
+ <or>
+ <gene reference="STM2927"/>
+ <gene reference="STM2502"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1438" reaction="R_PPAKr">
+ <or>
+ <gene reference="STM3242"/>
+ <gene reference="STM2057"/>
+ <gene reference="STM2337"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1439" reaction="R_PPALtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1440" reaction="R_PPAt4pp">
+ <gene reference="STM1125"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1441" reaction="R_PPAtex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1442" reaction="R_PPBNGS">
+ <gene reference="STM0372"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1443" reaction="R_PPC">
+ <gene reference="STM4119"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1444" reaction="R_PPCDC">
+ <gene reference="STM3730"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1445" reaction="R_PPCK">
+ <gene reference="STM3500"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1446" reaction="R_PPGPPDP">
+ <gene reference="STM3742"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1447" reaction="R_PPK2r">
+ <gene reference="STM2501"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1448" reaction="R_PPKr">
+ <gene reference="STM2501"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1449" reaction="R_PPM">
+ <gene reference="STM4569"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1450" reaction="R_PPM2">
+ <gene reference="STM4569"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1451" reaction="R_PPNCL2">
+ <gene reference="STM3730"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1452" reaction="R_PPND">
+ <gene reference="STM2669"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1453" reaction="R_PPNDH">
+ <gene reference="STM2667"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1454" reaction="R_PPPGO">
+ <gene reference="STM3987"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1455" reaction="R_PPPGO3">
+ <gene reference="STM3987"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1456" reaction="R_PPPNt2rpp">
+ <gene reference="STM2554"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1457" reaction="R_PPPNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1458" reaction="R_PPS">
+ <gene reference="STM1349"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1459" reaction="R_PPTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1460" reaction="R_PRAGSr">
+ <gene reference="STM4175"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1461" reaction="R_PRAIS">
+ <gene reference="STM2499.S"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1462" reaction="R_PRAIi">
+ <gene reference="STM1725"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1463" reaction="R_PRAMPC">
+ <gene reference="STM2078"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1464" reaction="R_PRASCSi">
+ <gene reference="STM2487"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1465" reaction="R_PRATPP">
+ <gene reference="STM2078"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1466" reaction="R_PRFGS">
+ <gene reference="STM2565"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1467" reaction="R_PRMICI">
+ <gene reference="STM2076"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1468" reaction="R_PROD2">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1469" reaction="R_PROGLYabcpp">
+ <and>
+ <gene reference="STM3630"/>
+ <gene reference="STM3629"/>
+ <gene reference="STM3628"/>
+ <gene reference="STM3627"/>
+ <gene reference="STM3626"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1470" reaction="R_PROGLYtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1471" reaction="R_PROTRS">
+ <gene reference="STM0242"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1472" reaction="R_PROabcpp">
+ <and>
+ <gene reference="STM2809"/>
+ <gene reference="STM2810"/>
+ <gene reference="STM2811"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1473" reaction="R_PROt4pp">
+ <gene reference="STM1125"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1474" reaction="R_PROtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1475" reaction="R_PRPPS">
+ <gene reference="STM1780"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1476" reaction="R_PSCLYStex">
+ <or>
+ <gene reference="STM2267"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1477" reaction="R_PSCVT">
+ <gene reference="STM0978"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1478" reaction="R_PSD120">
+ <gene reference="STM4348"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1479" reaction="R_PSD140">
+ <gene reference="STM4348"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1480" reaction="R_PSD141">
+ <gene reference="STM4348"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1481" reaction="R_PSD160">
+ <gene reference="STM4348"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1482" reaction="R_PSD161">
+ <gene reference="STM4348"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1483" reaction="R_PSD180">
+ <gene reference="STM4348"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1484" reaction="R_PSD181">
+ <gene reference="STM4348"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1485" reaction="R_PSERT">
+ <gene reference="STM0977"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1486" reaction="R_PSERtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1487" reaction="R_PSP_L">
+ <gene reference="STM4578"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1488" reaction="R_PSP_Lpp">
+ <gene reference="STM4249"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1489" reaction="R_PSSA120">
+ <gene reference="STM2652"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1490" reaction="R_PSSA140">
+ <gene reference="STM2652"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1491" reaction="R_PSSA141">
+ <gene reference="STM2652"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1492" reaction="R_PSSA160">
+ <gene reference="STM2652"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1493" reaction="R_PSSA161">
+ <gene reference="STM2652"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1494" reaction="R_PSSA180">
+ <gene reference="STM2652"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1495" reaction="R_PSSA181">
+ <gene reference="STM2652"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1496" reaction="R_PTA2">
+ <or>
+ <gene reference="STM2338"/>
+ <gene reference="STM2047"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1497" reaction="R_PTAr">
+ <or>
+ <gene reference="STM2338"/>
+ <gene reference="STM2466"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1498" reaction="R_PTHRpp">
+ <gene reference="STM4249"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1499" reaction="R_PTPATi">
+ <gene reference="STM3725"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1500" reaction="R_PTRCORNt7pp">
+ <gene reference="STM0700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1501" reaction="R_PTRCTA">
+ <gene reference="STM3218"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1502" reaction="R_PTRCabcpp">
+ <or>
+ <and>
+ <gene reference="STM0877"/>
+ <gene reference="STM0878"/>
+ <gene reference="STM0879"/>
+ <gene reference="STM0880"/>
+ </and>
+ <and>
+ <gene reference="STM1226"/>
+ <gene reference="STM1225"/>
+ <gene reference="STM1223"/>
+ <gene reference="STM1222"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1503" reaction="R_PTRCt2pp">
+ <gene reference="STM0700"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1504" reaction="R_PTRCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1505" reaction="R_PUNP1">
+ <gene reference="STM4570"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1506" reaction="R_PUNP2">
+ <gene reference="STM4570"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1507" reaction="R_PUNP3">
+ <gene reference="STM4570"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1508" reaction="R_PUNP4">
+ <gene reference="STM4570"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1509" reaction="R_PUNP5">
+ <gene reference="STM4570"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1510" reaction="R_PUNP6">
+ <gene reference="STM4570"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1511" reaction="R_PUNP7">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1512" reaction="R_PYAM5PO">
+ <gene reference="STM1448"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1513" reaction="R_PYDAMK">
+ <gene reference="STM2435"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1514" reaction="R_PYDXK">
+ <or>
+ <gene reference="STM2435"/>
+ <gene reference="STM1450"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1515" reaction="R_PYDXNK">
+ <gene reference="STM2435"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1516" reaction="R_PYK">
+ <or>
+ <gene reference="STM1888"/>
+ <gene reference="STM1378"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1517" reaction="R_PYNP2r">
+ <gene reference="STM3968"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1518" reaction="R_PYRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1519" reaction="R_QMO2">
+ <gene reference="STM3180"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1520" reaction="R_QMO3">
+ <gene reference="STM3180"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1521" reaction="R_QULNS">
+ <gene reference="STM0756"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1522" reaction="R_R5PP">
+ <or>
+ <gene reference="STM0840"/>
+ <gene reference="STM0842"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1523" reaction="R_R5PPpp">
+ <gene reference="STM4249"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1524" reaction="R_R5Ptex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1525" reaction="R_RBFK">
+ <gene reference="STM0045"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1526" reaction="R_RBFSa">
+ <gene reference="STM1426"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1527" reaction="R_RBFSb">
+ <gene reference="STM0417"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1528" reaction="R_RBK">
+ <or>
+ <gene reference="STM3885"/>
+ <gene reference="STM3793"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1529" reaction="R_RBK_L1">
+ <gene reference="STM0103"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1530" reaction="R_RBP4E">
+ <or>
+ <gene reference="STM0101"/>
+ <gene reference="STM4388"/>
+ <gene reference="STM3677"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1531" reaction="R_RHAT1">
+ <gene reference="STM3720"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1532" reaction="R_RHCCE">
+ <gene reference="STM2817"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1533" reaction="R_RIBabcpp">
+ <and>
+ <gene reference="STM3882"/>
+ <gene reference="STM3884"/>
+ <gene reference="STM3883"/>
+ <gene reference="STM3881"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1534" reaction="R_RIBtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1535" reaction="R_RMI">
+ <gene reference="STM4046"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1536" reaction="R_RMK">
+ <gene reference="STM4047"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1537" reaction="R_RMNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1538" reaction="R_RMNtpp">
+ <gene reference="STM4050"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1539" reaction="R_RMPA">
+ <gene reference="STM4045"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1540" reaction="R_RNDR1">
+ <or>
+ <and>
+ <gene reference="STM2277"/>
+ <gene reference="STM2278"/>
+ </and>
+ <and>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1541" reaction="R_RNDR1b">
+ <or>
+ <and>
+ <gene reference="STM1433"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM0872"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM1165"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM3702"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1542" reaction="R_RNDR2">
+ <or>
+ <and>
+ <gene reference="STM2277"/>
+ <gene reference="STM2278"/>
+ </and>
+ <and>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1543" reaction="R_RNDR2b">
+ <or>
+ <and>
+ <gene reference="STM3702"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM1165"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM1433"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM0872"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1544" reaction="R_RNDR3">
+ <or>
+ <and>
+ <gene reference="STM2277"/>
+ <gene reference="STM2278"/>
+ </and>
+ <and>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1545" reaction="R_RNDR3b">
+ <or>
+ <and>
+ <gene reference="STM1433"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM1165"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM0872"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM3702"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1546" reaction="R_RNDR4">
+ <or>
+ <and>
+ <gene reference="STM2277"/>
+ <gene reference="STM2278"/>
+ </and>
+ <and>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1547" reaction="R_RNDR4b">
+ <or>
+ <and>
+ <gene reference="STM1165"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM3702"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM1433"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ <and>
+ <gene reference="STM0872"/>
+ <gene reference="STM2807"/>
+ <gene reference="STM2808"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1548" reaction="R_RNTR1c">
+ <or>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1549" reaction="R_RNTR2c">
+ <or>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1550" reaction="R_RNTR3c">
+ <or>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1551" reaction="R_RNTR4c">
+ <or>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM4452"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM4084"/>
+ <gene reference="STM4452"/>
+ <gene reference="STM4451"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1552" reaction="R_RPE">
+ <or>
+ <gene reference="STM3483"/>
+ <gene reference="STM4080"/>
+ <gene reference="STM1617"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1553" reaction="R_RPI">
+ <or>
+ <gene reference="STM3063"/>
+ <gene reference="STM1933"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1554" reaction="R_S7PI">
+ <gene reference="STM0310"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1555" reaction="R_SADH">
+ <gene reference="STM1306"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1556" reaction="R_SADT2">
+ <and>
+ <gene reference="STM2934"/>
+ <gene reference="STM2935"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1557" reaction="R_SBTPD">
+ <gene reference="STM2835"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1558" reaction="R_SBTptspp">
+ <and>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ <gene reference="STM2832"/>
+ <gene reference="STM2834"/>
+ <gene reference="STM2833"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1559" reaction="R_SBTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1560" reaction="R_SDPDS">
+ <gene reference="STM2483"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1561" reaction="R_SDPTA">
+ <gene reference="STM3468"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1562" reaction="R_SELCYSS">
+ <gene reference="STM3683"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1563" reaction="R_SELNPS">
+ <gene reference="STM1297"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1564" reaction="R_SERASr">
+ <gene reference="STM0588"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1565" reaction="R_SERAT">
+ <gene reference="STM3699"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1566" reaction="R_SERD_D">
+ <gene reference="STM3802"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1567" reaction="R_SERTRS">
+ <gene reference="STM0963"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1568" reaction="R_SERTRS2">
+ <gene reference="STM0963"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1569" reaction="R_SERt2rpp">
+ <or>
+ <gene reference="STM2970"/>
+ <gene reference="STM3243"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1570" reaction="R_SERt4pp">
+ <gene reference="STM3225"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1571" reaction="R_SERtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1572" reaction="R_SFGTHi">
+ <gene reference="STM2194"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1573" reaction="R_SGDS">
+ <gene reference="STM1307"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1574" reaction="R_SGSAD">
+ <gene reference="STM1305"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1575" reaction="R_SHCHCS2">
+ <gene reference="STM2309"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1576" reaction="R_SHCHD2">
+ <gene reference="STM3477"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1577" reaction="R_SHCHF">
+ <gene reference="STM3477"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1578" reaction="R_SHK3Dr">
+ <or>
+ <gene reference="STM1359"/>
+ <gene reference="STM3401"/>
+ <gene reference="STM3859"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1579" reaction="R_SHKK">
+ <or>
+ <gene reference="STM3487"/>
+ <gene reference="STM0388"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1580" reaction="R_SKMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1581" reaction="R_SO2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1582" reaction="R_SO2tpp">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1583" reaction="R_SO3tex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1584" reaction="R_SO4tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1585" reaction="R_SOTA">
+ <gene reference="STM1303"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1586" reaction="R_SPMDAT1">
+ <gene reference="STM1502"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1587" reaction="R_SPMDAT2">
+ <gene reference="STM1502"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1588" reaction="R_SPMDabcpp">
+ <and>
+ <gene reference="STM1226"/>
+ <gene reference="STM1225"/>
+ <gene reference="STM1223"/>
+ <gene reference="STM1222"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1589" reaction="R_SPMDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1590" reaction="R_SPMS">
+ <gene reference="STM0166"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1591" reaction="R_SPODM">
+ <or>
+ <gene reference="STM4055"/>
+ <gene reference="STM1431"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1592" reaction="R_SPODMpp">
+ <or>
+ <gene reference="STM1440"/>
+ <gene reference="STM1044"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1593" reaction="R_SSALy">
+ <gene reference="STM2791"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1594" reaction="R_SUCBZL">
+ <gene reference="STM2305"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1595" reaction="R_SUCBZS">
+ <gene reference="STM2306"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1596" reaction="R_SUCCt2_2pp">
+ <gene reference="STM3614"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1597" reaction="R_SUCCtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1598" reaction="R_SUCDi">
+ <and>
+ <gene reference="STM0732"/>
+ <gene reference="STM0733"/>
+ <gene reference="STM0734"/>
+ <gene reference="STM0735"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1599" reaction="R_SUCOAS">
+ <and>
+ <gene reference="STM0738"/>
+ <gene reference="STM0739"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1600" reaction="R_SUCRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1601" reaction="R_SULFACtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1602" reaction="R_SULRi">
+ <and>
+ <gene reference="STM2947"/>
+ <gene reference="STM2948"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1603" reaction="R_SULabcpp">
+ <or>
+ <and>
+ <gene reference="STM2441"/>
+ <gene reference="STM2443"/>
+ <gene reference="STM2442"/>
+ <gene reference="STM4063"/>
+ </and>
+ <and>
+ <gene reference="STM0781"/>
+ <gene reference="STM0782"/>
+ <gene reference="STM0783"/>
+ </and>
+ <and>
+ <gene reference="STM2441"/>
+ <gene reference="STM2444"/>
+ <gene reference="STM2443"/>
+ <gene reference="STM2442"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1604" reaction="R_T2DECAI">
+ <gene reference="STM1067"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1605" reaction="R_TALA">
+ <or>
+ <gene reference="STM2473"/>
+ <gene reference="STM0007"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1606" reaction="R_TARTRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1607" reaction="R_TAURtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1608" reaction="R_TCYNTtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1609" reaction="R_TDECOAI">
+ <gene reference="STM3983"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1610" reaction="R_TDP">
+ <gene reference="STM1235"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1611" reaction="R_TDPADGAT">
+ <gene reference="STM3924"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1612" reaction="R_TDPAGTA">
+ <gene reference="STM3925"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1613" reaction="R_TDPDRE">
+ <gene reference="STM2094"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1614" reaction="R_TDPDRR">
+ <gene reference="STM2096"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1615" reaction="R_TDPGDH">
+ <or>
+ <gene reference="STM2097"/>
+ <gene reference="STM3922"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1616" reaction="R_TDSK">
+ <gene reference="STM0985"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1617" reaction="R_TDSR1">
+ <and>
+ <gene reference="STM3043"/>
+ <gene reference="STM4323"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1618" reaction="R_TDSR2">
+ <and>
+ <gene reference="STM4323"/>
+ <gene reference="STM0607"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1619" reaction="R_THD2pp">
+ <and>
+ <gene reference="STM1480"/>
+ <gene reference="STM1479"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1620" reaction="R_THDPS">
+ <gene reference="STM0213"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1621" reaction="R_THIORDXi">
+ <and>
+ <or>
+ <and>
+ <gene reference="STM0609"/>
+ <gene reference="STM0608"/>
+ </and>
+ <and>
+ <gene reference="STM0609"/>
+ <gene reference="STM0402"/>
+ </and>
+ </or>
+ <or>
+ <gene reference="STM2649"/>
+ <gene reference="STM3915"/>
+ </or>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1622" reaction="R_THMDt2pp">
+ <or>
+ <gene reference="STM3113"/>
+ <gene reference="STM2409"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1623" reaction="R_THMDt2rpp">
+ <gene reference="STM2421"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1624" reaction="R_THMDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1625" reaction="R_THMabcpp">
+ <and>
+ <gene reference="STM0108"/>
+ <gene reference="STM0107"/>
+ <gene reference="STM0106"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1626" reaction="R_THMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1627" reaction="R_THRA2i">
+ <or>
+ <gene reference="STM2555"/>
+ <gene reference="STM0934"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1628" reaction="R_THRAi">
+ <or>
+ <gene reference="STM2555"/>
+ <gene reference="STM0934"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1629" reaction="R_THRD">
+ <gene reference="STM3708"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1630" reaction="R_THRD_L">
+ <or>
+ <gene reference="STM3244"/>
+ <gene reference="STM1826"/>
+ <gene reference="STM2971"/>
+ <gene reference="STM3905"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1631" reaction="R_THRPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1632" reaction="R_THRS">
+ <gene reference="STM0004"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1633" reaction="R_THRTRS">
+ <gene reference="STM1333"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1634" reaction="R_THRabcpp">
+ <and>
+ <gene reference="STM3560"/>
+ <gene reference="STM3561"/>
+ <gene reference="STM3563"/>
+ <gene reference="STM3567"/>
+ <gene reference="STM3562"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1635" reaction="R_THRt2pp">
+ <or>
+ <gene reference="STM0832"/>
+ <gene reference="STM3959"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1636" reaction="R_THRt2rpp">
+ <gene reference="STM3243"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1637" reaction="R_THRt4pp">
+ <gene reference="STM3225"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1638" reaction="R_THRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1639" reaction="R_THYMtex">
+ <or>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1640" reaction="R_TKT1">
+ <or>
+ <gene reference="STM3076"/>
+ <gene reference="STM2474"/>
+ <gene reference="STM2341"/>
+ <gene reference="STM2340"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1641" reaction="R_TKT2">
+ <or>
+ <gene reference="STM3076"/>
+ <gene reference="STM2474"/>
+ <gene reference="STM2341"/>
+ <gene reference="STM2340"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1642" reaction="R_TMAOR1pp">
+ <and>
+ <gene reference="STM3823"/>
+ <gene reference="STM3822"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1643" reaction="R_TMAOR2pp">
+ <and>
+ <gene reference="STM3823"/>
+ <gene reference="STM3822"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1644" reaction="R_TMAOtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1645" reaction="R_TMAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1646" reaction="R_TMDK1">
+ <gene reference="STM1750"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1647" reaction="R_TMDPP">
+ <gene reference="STM4568"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1648" reaction="R_TMDS">
+ <gene reference="STM3001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1649" reaction="R_TMK">
+ <gene reference="STM1208"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1650" reaction="R_TMPK">
+ <gene reference="STM0419"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1651" reaction="R_TMPPP">
+ <gene reference="STM4163"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1652" reaction="R_TPI">
+ <gene reference="STM4081"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1653" reaction="R_TPRDCOAS">
+ <gene reference="STM0619"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1654" reaction="R_TRDR">
+ <or>
+ <and>
+ <gene reference="STM3915"/>
+ <gene reference="STM0958"/>
+ <gene reference="STM0958"/>
+ </and>
+ <gene reference="STM2649"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1655" reaction="R_TRE6PH">
+ <gene reference="STM4453"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1656" reaction="R_TRE6PP">
+ <gene reference="STM1929"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1657" reaction="R_TRE6PS">
+ <gene reference="STM1928"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1658" reaction="R_TREH">
+ <gene reference="STM3603"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1659" reaction="R_TREHpp">
+ <gene reference="STM1796"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1660" reaction="R_TREptspp">
+ <and>
+ <gene reference="STM2433"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1661" reaction="R_TREtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1662" reaction="R_TRPS1">
+ <and>
+ <gene reference="STM1727"/>
+ <gene reference="STM1726"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1663" reaction="R_TRPS2">
+ <and>
+ <gene reference="STM1727"/>
+ <gene reference="STM1726"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1664" reaction="R_TRPS3">
+ <and>
+ <gene reference="STM1727"/>
+ <gene reference="STM1726"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1665" reaction="R_TRPTRS">
+ <gene reference="STM3481"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1666" reaction="R_TRPt2rpp">
+ <or>
+ <gene reference="STM0150"/>
+ <gene reference="STM3279"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1667" reaction="R_TRPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1668" reaction="R_TRSARr">
+ <or>
+ <gene reference="STM0519"/>
+ <gene reference="STM3248"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1669" reaction="R_TSULabcpp">
+ <or>
+ <and>
+ <gene reference="STM2441"/>
+ <gene reference="STM2444"/>
+ <gene reference="STM2443"/>
+ <gene reference="STM2442"/>
+ </and>
+ <and>
+ <gene reference="STM2441"/>
+ <gene reference="STM2443"/>
+ <gene reference="STM2442"/>
+ <gene reference="STM4063"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1670" reaction="R_TSULtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1671" reaction="R_TTDCAtexi">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1672" reaction="R_TTDCEAtexi">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1673" reaction="R_TUNGSabcpp">
+ <and>
+ <gene reference="STM0781"/>
+ <gene reference="STM0782"/>
+ <gene reference="STM0783"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1674" reaction="R_TUNGStex">
+ <or>
+ <gene reference="STM2267"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1675" reaction="R_TYMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1676" reaction="R_TYRPpp">
+ <gene reference="STM4249"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1677" reaction="R_TYRPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1678" reaction="R_TYRTA">
+ <or>
+ <gene reference="STM4248"/>
+ <gene reference="STM0998"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1679" reaction="R_TYRTRS">
+ <gene reference="STM1449"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1680" reaction="R_TYRt2rpp">
+ <or>
+ <gene reference="STM1937"/>
+ <gene reference="STM0150"/>
+ <gene reference="STM0568"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1681" reaction="R_TYRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1682" reaction="R_U23GAAT">
+ <gene reference="STM0226"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1683" reaction="R_UAAGDS">
+ <gene reference="STM0123"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1684" reaction="R_UACGALPpp">
+ <gene reference="STM0494"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1685" reaction="R_UACGAMPpp">
+ <gene reference="STM0494"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1686" reaction="R_UACGAMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1687" reaction="R_UACMAMO">
+ <gene reference="STM3921"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1688" reaction="R_UAG2E">
+ <gene reference="STM3920"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1689" reaction="R_UAGAAT">
+ <and>
+ <gene reference="STM1196"/>
+ <gene reference="STM0228"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1690" reaction="R_UAGCVT">
+ <gene reference="STM3307"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1691" reaction="R_UAGDP">
+ <gene reference="STM3862"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1692" reaction="R_UAGPT3">
+ <gene reference="STM0128"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1693" reaction="R_UAMAGS">
+ <gene reference="STM0126"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1694" reaction="R_UAMAS">
+ <gene reference="STM0129"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1695" reaction="R_UAPGR">
+ <gene reference="STM4137"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1696" reaction="R_UDCPDP">
+ <or>
+ <gene reference="STM1710"/>
+ <gene reference="STM0865"/>
+ <gene reference="STM3205"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1697" reaction="R_UDCPDPS">
+ <gene reference="STM0221"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1698" reaction="R_UDCPDPpp">
+ <or>
+ <gene reference="STM0865"/>
+ <gene reference="STM1710"/>
+ <gene reference="STM3205"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1699" reaction="R_UDPACGALtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1700" reaction="R_UDPG4E">
+ <gene reference="STM0776"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1701" reaction="R_UDPGALPpp">
+ <gene reference="STM0494"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1702" reaction="R_UDPGALtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1703" reaction="R_UDPGD">
+ <gene reference="STM2080"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1704" reaction="R_UDPGDC">
+ <gene reference="STM2299"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1705" reaction="R_UDPGLCURtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1706" reaction="R_UDPGPpp">
+ <gene reference="STM0494"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1707" reaction="R_UDPGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1708" reaction="R_UDPKAAT">
+ <gene reference="STM2297"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1709" reaction="R_UGLCURPpp">
+ <gene reference="STM0494"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1710" reaction="R_UGLT">
+ <gene reference="STM0775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1711" reaction="R_UGLYCH">
+ <gene reference="STM0515"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1712" reaction="R_UGMDDS">
+ <gene reference="STM0124"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1713" reaction="R_UHGADA">
+ <gene reference="STM0134"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1714" reaction="R_ULA4NFT">
+ <gene reference="STM2299"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1715" reaction="R_UM3PL">
+ <gene reference="STM4416"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1716" reaction="R_UM4PCP">
+ <gene reference="STM1800"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1717" reaction="R_UM4PL">
+ <gene reference="STM4416"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1718" reaction="R_UMPK">
+ <or>
+ <gene reference="STM0980"/>
+ <gene reference="STM0218"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1719" reaction="R_UMPtex">
+ <or>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ <gene reference="STM0320"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1720" reaction="R_UNK3">
+ <gene reference="STM4248"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1721" reaction="R_UPLA4FNT">
+ <gene reference="STM2298"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1722" reaction="R_UPP3MT">
+ <or>
+ <gene reference="STM3936"/>
+ <gene reference="STM3477"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1723" reaction="R_UPP3S">
+ <gene reference="STM3937"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1724" reaction="R_UPPRT">
+ <gene reference="STM2498"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1725" reaction="R_URAt2pp">
+ <gene reference="STM2497"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1726" reaction="R_URAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1727" reaction="R_URDGLYCD">
+ <gene reference="STM0528"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1728" reaction="R_UREAtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1729" reaction="R_UREAtpp">
+ <gene reference="STM4087"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1730" reaction="R_URIDK2r">
+ <gene reference="STM0218"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1731" reaction="R_URIH">
+ <or>
+ <gene reference="STM0661"/>
+ <gene reference="STM0051"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1732" reaction="R_URIK2">
+ <gene reference="STM2122"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1733" reaction="R_URIt2pp">
+ <or>
+ <gene reference="STM3113"/>
+ <gene reference="STM2409"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1734" reaction="R_URIt2rpp">
+ <gene reference="STM2421"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1735" reaction="R_URItex">
+ <gene reference="STM0413"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1736" reaction="R_USHD">
+ <gene reference="STM0535"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1737" reaction="R_VALTA">
+ <gene reference="STM3903"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1738" reaction="R_VALTRS">
+ <gene reference="STM4475"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1739" reaction="R_VALabcpp">
+ <and>
+ <gene reference="STM3560"/>
+ <gene reference="STM3561"/>
+ <gene reference="STM3563"/>
+ <gene reference="STM3567"/>
+ <gene reference="STM3562"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1740" reaction="R_VALt2rpp">
+ <gene reference="STM0399"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1741" reaction="R_VALtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1742" reaction="R_VPAMT">
+ <gene reference="STM3665"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1743" reaction="R_X5PL3E">
+ <gene reference="STM4387"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1744" reaction="R_XANt2pp">
+ <gene reference="STM3747"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1745" reaction="R_XANtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1746" reaction="R_XMPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1747" reaction="R_XPPT">
+ <gene reference="STM0317"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1748" reaction="R_XTSNH">
+ <gene reference="STM0051"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1749" reaction="R_XTSNt2rpp">
+ <gene reference="STM2421"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1750" reaction="R_XTSNtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1751" reaction="R_XYLI1">
+ <gene reference="STM3661"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1752" reaction="R_XYLI2">
+ <gene reference="STM3661"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1753" reaction="R_XYLK">
+ <or>
+ <gene reference="STM3660"/>
+ <gene reference="STM0103"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1754" reaction="R_XYLK2">
+ <or>
+ <gene reference="STM0103"/>
+ <gene reference="STM3674"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1755" reaction="R_XYLUt2pp">
+ <and>
+ <gene reference="STM3671"/>
+ <gene reference="STM3672"/>
+ <gene reference="STM3673"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1756" reaction="R_XYLUtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1757" reaction="R_XYLtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1758" reaction="R_XYLt2pp">
+ <gene reference="STM0042"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1759" reaction="R_ZN2abcpp">
+ <gene reference="STM3576"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1760" reaction="R_ZN2t3pp">
+ <or>
+ <gene reference="STM0758"/>
+ <gene reference="STM4061"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1761" reaction="R_ZN2tpp">
+ <gene reference="STM3190"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1762" reaction="R_ZNabcpp">
+ <and>
+ <gene reference="STM1891"/>
+ <gene reference="STM1893"/>
+ <gene reference="STM1892.S"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1763" reaction="R_Zn2tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1764" reaction="R_THZPSN">
+ <and>
+ <gene reference="STM2543"/>
+ <gene reference="STM4162"/>
+ <gene reference="STM4159"/>
+ <gene reference="STM4160"/>
+ <gene reference="STM0425"/>
+ <gene reference="STM4161"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1765" reaction="R_AEPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1766" reaction="R_AEPabcpp">
+ <and>
+ <gene reference="STM0426"/>
+ <gene reference="STM0427"/>
+ <gene reference="STM0429"/>
+ <gene reference="STM0428"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1767" reaction="R_AEPPYRTA">
+ <gene reference="STM0431"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1768" reaction="R_PALDH">
+ <gene reference="STM0432"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1769" reaction="R_4hoxpactex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1770" reaction="R_4HOXPACt2pp">
+ <gene reference="STM1107"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1771" reaction="R_FLAVNADR">
+ <gene reference="STM1098"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1772" reaction="R_4HOXPACMON">
+ <or>
+ <gene reference="STM1098"/>
+ <gene reference="STM1099"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1773" reaction="R_4HOXPACMOF">
+ <gene reference="STM1099"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1774" reaction="R_34DHPACDO">
+ <gene reference="STM1103"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1775" reaction="R_4C2HM6SADH">
+ <gene reference="STM1102"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1776" reaction="R_5CM2HMUDI">
+ <gene reference="STM1104"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1777" reaction="R_5C2O3EDDC">
+ <gene reference="STM1101"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1778" reaction="R_2HH24DDH">
+ <gene reference="STM1105"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1779" reaction="R_4H2KPILY">
+ <gene reference="STM1106"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1780" reaction="R_12PPDS2tpp">
+ <gene reference="STM2037"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1781" reaction="R_12PPDRDH">
+ <and>
+ <gene reference="STM2040"/>
+ <gene reference="STM2041"/>
+ <gene reference="STM2042"/>
+ <gene reference="STM2043"/>
+ <gene reference="STM2044"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1782" reaction="R_12PPDSDH">
+ <and>
+ <gene reference="STM2040"/>
+ <gene reference="STM2041"/>
+ <gene reference="STM2042"/>
+ <gene reference="STM2043"/>
+ <gene reference="STM2044"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1783" reaction="R_ALCDPPAL">
+ <gene reference="STM2052"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1784" reaction="R_COAPPALDH">
+ <gene reference="STM2051"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1785" reaction="R_DSCLCOCH">
+ <or>
+ <gene reference="STM2025"/>
+ <gene reference="STM3477"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1786" reaction="R_Cobalt2abcppI">
+ <and>
+ <gene reference="STM2023"/>
+ <gene reference="STM2022"/>
+ <gene reference="STM2021"/>
+ <gene reference="STM2020"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1787" reaction="R_Cobalt2abcppII">
+ <and>
+ <gene reference="STM2023"/>
+ <gene reference="STM2022"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1788" reaction="R_CODSCL2MT">
+ <gene reference="STM2024"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1789" reaction="R_CODSCL3MT">
+ <gene reference="STM2027"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1790" reaction="R_CODSCL4MT">
+ <gene reference="STM2029"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1791" reaction="R_CODSCL5DA">
+ <gene reference="STM2028"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1792" reaction="R_CODSCL5BMT">
+ <gene reference="STM2032"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1793" reaction="R_CODSCL6ARED">
+ <gene reference="STM2026"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1794" reaction="R_CODSCL6BMT">
+ <gene reference="STM2031"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1795" reaction="R_CODSCL7MTDC">
+ <gene reference="STM2030"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1796" reaction="R_CODSCL8XI">
+ <gene reference="STM2033"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1797" reaction="R_COBNAD">
+ <gene reference="STM2035"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1798" reaction="R_COB2NDARED">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1799" reaction="R_COB1NDAAT1">
+ <or>
+ <gene reference="STM2050"/>
+ <gene reference="STM1718"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1800" reaction="R_COB1NDAAT2">
+ <gene reference="STM2467"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1801" reaction="R_ADCOBNSYN">
+ <gene reference="STM2019"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1802" reaction="R_LTHRK">
+ <gene reference="STM2058"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1803" reaction="R_THRPDC">
+ <gene reference="STM0644"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1804" reaction="R_ADOCBIPS">
+ <gene reference="STM2034"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1805" reaction="R_ADOCBLPS">
+ <gene reference="STM2017"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1806" reaction="R_ADOCBLPP">
+ <gene reference="STM0643"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1807" reaction="R_ADOCBIK">
+ <or>
+ <gene reference="STM2018"/>
+ <gene reference="STM1208"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1808" reaction="R_CBLAT">
+ <or>
+ <gene reference="STM1718"/>
+ <gene reference="STM2050"/>
+ <gene reference="STM2467"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1809" reaction="R_REMNANT1tex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1810" reaction="R_udcdp20OagLpp">
+ <gene reference="STM3713"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1811" reaction="R_udcdpgalrmnmanabetpp">
+ <gene reference="STM2088"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1812" reaction="R_OGLT">
+ <gene reference="STM2082"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1813" reaction="R_ORLT">
+ <gene reference="STM2085"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1814" reaction="R_OMLT">
+ <gene reference="STM2086"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1815" reaction="R_OALT">
+ <gene reference="STM2087"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1816" reaction="R_MAN1PT2">
+ <or>
+ <gene reference="STM2105.S"/>
+ <gene reference="STM2084"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1817" reaction="R_PMANM">
+ <or>
+ <gene reference="STM2104"/>
+ <gene reference="STM2083"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1818" reaction="R_OAP1pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1819" reaction="R_OAP2pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1820" reaction="R_OAP3pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1821" reaction="R_OAP4pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1822" reaction="R_OAP5pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1823" reaction="R_OAP6pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1824" reaction="R_OAP7pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1825" reaction="R_OAP8pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1826" reaction="R_OAP9pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1827" reaction="R_OAP10pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1828" reaction="R_OAP11pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1829" reaction="R_OAP12pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1830" reaction="R_OAP13pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1831" reaction="R_OAP14pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1832" reaction="R_OAP15pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1833" reaction="R_OAP16pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1834" reaction="R_OAP17pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1835" reaction="R_OAP18pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1836" reaction="R_OAP19pp">
+ <gene reference="STM1332"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1837" reaction="R_G1PCT">
+ <gene reference="STM2092"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1838" reaction="R_CDPGLC46DH">
+ <gene reference="STM2091"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1839" reaction="R_CDP4D6DGLCRx">
+ <and>
+ <gene reference="STM2090"/>
+ <gene reference="STM2093"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1840" reaction="R_CDPABEQS">
+ <gene reference="STM2089"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1841" reaction="R_SALCHS4FEexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1842" reaction="R_SALCHS4FEabcpp">
+ <and>
+ <gene reference="STM0594"/>
+ <gene reference="STM0590"/>
+ <gene reference="STM0592"/>
+ <gene reference="STM0591"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1843" reaction="R_SALCHS4abcpp">
+ <gene reference="STM2774"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1844" reaction="R_FEENTER2tpp">
+ <gene reference="STM2774"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1845" reaction="R_SALCHSXtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1846" reaction="R_CSNt2pp">
+ <gene reference="STM3333"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1847" reaction="R_CSND">
+ <gene reference="STM3334"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1848" reaction="R_ALCD19">
+ <gene reference="STM1627"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1849" reaction="R_ALCD2x">
+ <or>
+ <gene reference="STM1627"/>
+ <gene reference="STM1567"/>
+ <gene reference="STM1749"/>
+ <gene reference="STM2461"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1850" reaction="R_FALDH2">
+ <gene reference="STM1627"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1851" reaction="R_DPR">
+ <or>
+ <gene reference="STM3909"/>
+ <gene reference="STM0434"/>
+ <gene reference="STM2573"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1852" reaction="R_LIPAHT2ex">
+ <gene reference="STM0628"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1853" reaction="R_LIPAHTex">
+ <gene reference="STM0628"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1854" reaction="R_CYTBD2pp">
+ <and>
+ <gene reference="STM1792"/>
+ <gene reference="STM1793"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1855" reaction="R_CYTBDpp">
+ <or>
+ <and>
+ <gene reference="STM1792"/>
+ <gene reference="STM1793"/>
+ </and>
+ <and>
+ <gene reference="STM0740"/>
+ <gene reference="STM0741"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1856" reaction="R_ACANTHAT">
+ <gene reference="STM1582"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1857" reaction="R_GLTPD">
+ <gene reference="STM3261"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1858" reaction="R_TGBPA">
+ <and>
+ <gene reference="STM3257"/>
+ <gene reference="STM3253"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1859" reaction="R_GUI1">
+ <gene reference="STM3137"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1860" reaction="R_GUI2">
+ <gene reference="STM3137"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1861" reaction="R_MNNH">
+ <gene reference="STM3135"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1862" reaction="R_MANAO">
+ <gene reference="STM3136"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1863" reaction="R_OAADCS">
+ <or>
+ <and>
+ <gene reference="STM0054"/>
+ <gene reference="STM0055"/>
+ <gene reference="STM0056"/>
+ </and>
+ <and>
+ <gene reference="STM3351"/>
+ <gene reference="STM3352"/>
+ <gene reference="STM3353"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1864" reaction="R_CITt4pp">
+ <gene reference="STM0057"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1865" reaction="R_DDGLCNt2rpp">
+ <gene reference="STM0161"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1866" reaction="R_CITt2pp">
+ <gene reference="STM0689"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1867" reaction="R_CITtupp">
+ <and>
+ <gene reference="STM2786"/>
+ <gene reference="STM2787"/>
+ <gene reference="STM2788"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1868" reaction="R_ICITtupp">
+ <and>
+ <gene reference="STM2786"/>
+ <gene reference="STM2787"/>
+ <gene reference="STM2788"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1869" reaction="R_ACONCtupp">
+ <and>
+ <gene reference="STM2786"/>
+ <gene reference="STM2787"/>
+ <gene reference="STM2788"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1870" reaction="R_NI2uabcpp">
+ <or>
+ <gene reference="STM4456"/>
+ <and>
+ <gene reference="STM1255"/>
+ <gene reference="STM1256"/>
+ <gene reference="STM1257"/>
+ <gene reference="STM1258"/>
+ <gene reference="STM1259"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1871" reaction="R_GALTptspp">
+ <and>
+ <gene reference="STM3258"/>
+ <gene reference="STM3259"/>
+ <gene reference="STM3260"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1872" reaction="R_TAGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1873" reaction="R_TAGptspp">
+ <and>
+ <gene reference="STM3255"/>
+ <gene reference="STM3256"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1874" reaction="R_TAG1PK">
+ <or>
+ <gene reference="STM1326"/>
+ <gene reference="STM3254"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1875" reaction="R_FE2abcpp">
+ <or>
+ <gene reference="STM3506"/>
+ <and>
+ <gene reference="STM2861"/>
+ <gene reference="STM2862"/>
+ <gene reference="STM2863"/>
+ <gene reference="STM2864"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1876" reaction="R_MN2abcpp">
+ <and>
+ <gene reference="STM2861"/>
+ <gene reference="STM2862"/>
+ <gene reference="STM2863"/>
+ <gene reference="STM2864"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1877" reaction="R_TETDHpp1">
+ <and>
+ <gene reference="STM1383"/>
+ <gene reference="STM1385"/>
+ <gene reference="STM1384"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1878" reaction="R_TSULDHpp1">
+ <and>
+ <gene reference="STM2065"/>
+ <gene reference="STM2064"/>
+ <gene reference="STM2063"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1879" reaction="R_TETDHpp2">
+ <and>
+ <gene reference="STM1383"/>
+ <gene reference="STM1385"/>
+ <gene reference="STM1384"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1880" reaction="R_TSULDHpp2">
+ <and>
+ <gene reference="STM2065"/>
+ <gene reference="STM2064"/>
+ <gene reference="STM2063"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1881" reaction="R_TETDHpp3">
+ <and>
+ <gene reference="STM1383"/>
+ <gene reference="STM1385"/>
+ <gene reference="STM1384"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1882" reaction="R_TSULDHpp3">
+ <and>
+ <gene reference="STM2065"/>
+ <gene reference="STM2064"/>
+ <gene reference="STM2063"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1883" reaction="R_SO3R">
+ <and>
+ <gene reference="STM2548"/>
+ <gene reference="STM2549"/>
+ <gene reference="STM2550"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1884" reaction="R_MG2uabcpp">
+ <or>
+ <gene reference="STM4456"/>
+ <gene reference="STM3763"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1885" reaction="R_UPPDC1">
+ <gene reference="STM4167"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1886" reaction="R_AIRSK">
+ <gene reference="STM4066"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1887" reaction="R_AIRStex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1888" reaction="R_ARGDA">
+ <gene reference="STM4467"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1889" reaction="R_OCBT">
+ <or>
+ <gene reference="STM4469"/>
+ <gene reference="STM4465"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1890" reaction="R_CBMKr">
+ <or>
+ <gene reference="STM0532"/>
+ <gene reference="STM4466"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1891" reaction="R_3PGt6pp">
+ <gene reference="STM2399"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1892" reaction="R_2PGt6pp">
+ <gene reference="STM2399"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1893" reaction="R_PEPt6pp">
+ <gene reference="STM2399"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1894" reaction="R_PEPtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1895" reaction="R_2PGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1896" reaction="R_3PGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1897" reaction="R_SERD_L">
+ <or>
+ <gene reference="STM3240"/>
+ <gene reference="STM1826"/>
+ <gene reference="STM2971"/>
+ <gene reference="STM2196"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1898" reaction="R_TARTD">
+ <and>
+ <gene reference="STM3355"/>
+ <gene reference="STM3354"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1899" reaction="R_NI2tpp">
+ <or>
+ <gene reference="STM3952"/>
+ <gene reference="STM2783"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1900" reaction="R_CAT">
+ <or>
+ <gene reference="STM1318"/>
+ <gene reference="STM4106"/>
+ <gene reference="STM1731"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1901" reaction="R_CHORM">
+ <or>
+ <gene reference="STM2667"/>
+ <gene reference="STM2669"/>
+ <gene reference="STM1269"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1902" reaction="R_DAPAL">
+ <gene reference="STM1002"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1903" reaction="R_UDPGALM">
+ <gene reference="STM0719"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1904" reaction="R_HYD1pp">
+ <or>
+ <and>
+ <gene reference="STM1786"/>
+ <gene reference="STM1787"/>
+ <gene reference="STM1788"/>
+ </and>
+ <and>
+ <gene reference="STM3147"/>
+ <gene reference="STM3150"/>
+ </and>
+ <and>
+ <gene reference="STM2847"/>
+ <gene reference="STM2848"/>
+ <gene reference="STM2849"/>
+ <gene reference="STM2850"/>
+ <gene reference="STM2851"/>
+ <gene reference="STM2852"/>
+ </and>
+ <and>
+ <gene reference="STM1538"/>
+ <gene reference="STM1539"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1905" reaction="R_HYD2pp">
+ <or>
+ <and>
+ <gene reference="STM1786"/>
+ <gene reference="STM1787"/>
+ <gene reference="STM1788"/>
+ </and>
+ <and>
+ <gene reference="STM3147"/>
+ <gene reference="STM3150"/>
+ </and>
+ <and>
+ <gene reference="STM1538"/>
+ <gene reference="STM1539"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1906" reaction="R_HYD3pp">
+ <or>
+ <and>
+ <gene reference="STM1786"/>
+ <gene reference="STM1787"/>
+ <gene reference="STM1788"/>
+ </and>
+ <and>
+ <gene reference="STM3147"/>
+ <gene reference="STM3150"/>
+ </and>
+ <and>
+ <gene reference="STM1538"/>
+ <gene reference="STM1539"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1907" reaction="R_TETtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1908" reaction="R_FOAMtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1909" reaction="R_TARTRDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1910" reaction="R_TARTRDtpp">
+ <gene reference="STM3356"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1911" reaction="R_GALCTD">
+ <or>
+ <gene reference="STM3250"/>
+ <gene reference="STM3697"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1912" reaction="R_SHSL1">
+ <or>
+ <gene reference="STM4100"/>
+ <gene reference="STM3624A"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1913" reaction="R_ASPt2_3pp">
+ <or>
+ <gene reference="STM4325"/>
+ <gene reference="STM4301"/>
+ <gene reference="STM3599"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1914" reaction="R_SUCFUMtpp">
+ <or>
+ <gene reference="STM4301"/>
+ <gene reference="STM0627"/>
+ <gene reference="STM4325"/>
+ <gene reference="STM3599"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1915" reaction="R_SUCCt2_3pp">
+ <or>
+ <gene reference="STM4301"/>
+ <gene reference="STM4325"/>
+ <gene reference="STM3599"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1916" reaction="R_FUMt2_3pp">
+ <or>
+ <gene reference="STM4325"/>
+ <gene reference="STM4301"/>
+ <gene reference="STM0627"/>
+ <gene reference="STM3599"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1917" reaction="R_MALt2_3pp">
+ <or>
+ <gene reference="STM4301"/>
+ <gene reference="STM4325"/>
+ <gene reference="STM3599"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1918" reaction="R_ALAALAD">
+ <gene reference="STM1599"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1919" reaction="R_DMSOR1">
+ <or>
+ <and>
+ <gene reference="STM1499"/>
+ <gene reference="STM1498"/>
+ <gene reference="STM1497"/>
+ <gene reference="STM1496"/>
+ </and>
+ <and>
+ <gene reference="STM0964"/>
+ <gene reference="STM0965"/>
+ <gene reference="STM0966"/>
+ </and>
+ <and>
+ <gene reference="STM4305.S"/>
+ <gene reference="STM4306"/>
+ <gene reference="STM4307"/>
+ </and>
+ <and>
+ <gene reference="STM2528"/>
+ <gene reference="STM2530"/>
+ <gene reference="STM2529"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1920" reaction="R_DMSOR2">
+ <or>
+ <and>
+ <gene reference="STM0964"/>
+ <gene reference="STM0965"/>
+ <gene reference="STM0966"/>
+ </and>
+ <and>
+ <gene reference="STM4305.S"/>
+ <gene reference="STM4306"/>
+ <gene reference="STM4307"/>
+ </and>
+ <and>
+ <gene reference="STM2528"/>
+ <gene reference="STM2530"/>
+ <gene reference="STM2529"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1921" reaction="R_NAt3pp">
+ <or>
+ <gene reference="STM0866"/>
+ <gene reference="STM1771"/>
+ <gene reference="STM1556"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1922" reaction="R_4IZ5PPH">
+ <gene reference="STM0787"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1923" reaction="R_NFLGLNH">
+ <gene reference="STM0788"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1924" reaction="R_FEROXBFEabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1925" reaction="R_FEROXEFEabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1926" reaction="R_FEROXGFEabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1927" reaction="R_FEROXGFEtonex">
+ <and>
+ <gene reference="STM0364"/>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1928" reaction="R_FEROXBFEtex">
+ <gene reference="STM0364"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1929" reaction="R_FEROXEFEtex">
+ <gene reference="STM0364"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1930" reaction="R_FEROXGtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1931" reaction="R_FEROXEtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1932" reaction="R_FEROXBtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1933" reaction="R_DRIBtpp">
+ <gene reference="STM3792"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1934" reaction="R_DRBK">
+ <gene reference="STM3793"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1935" reaction="R_DRIBtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1936" reaction="R_SLCYSS">
+ <gene reference="STM2440"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1937" reaction="R_GSHPO">
+ <gene reference="STM1341"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1938" reaction="R_HHDDI">
+ <gene reference="STM1101"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1939" reaction="R_INOSR">
+ <or>
+ <gene reference="STM4433"/>
+ <gene reference="STM4425"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1940" reaction="R_MMSAD3">
+ <gene reference="STM4421"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1941" reaction="R_CHITPH">
+ <gene reference="STM1316"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1942" reaction="R_D5KGK">
+ <gene reference="STM4420"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1943" reaction="R_DHEDAA">
+ <and>
+ <gene reference="STM1106"/>
+ <gene reference="STM2289"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1944" reaction="R_2INSD">
+ <gene reference="STM4424.S"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1945" reaction="R_DTARTD">
+ <gene reference="STM2949"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1946" reaction="R_NMNR">
+ <gene reference="STM2949"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1947" reaction="R_RNMK">
+ <gene reference="STM4580.S"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1948" reaction="R_OACT">
+ <gene reference="STM2232"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1949" reaction="R_UDCPAT">
+ <gene reference="STM2087"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1950" reaction="R_UDCPMT">
+ <gene reference="STM2086"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1951" reaction="R_UDCPRT">
+ <gene reference="STM2085"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1952" reaction="R_UDCPGT">
+ <gene reference="STM2082"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1953" reaction="R_TCBO">
+ <and>
+ <gene reference="STM0690"/>
+ <gene reference="STM0691"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1954" reaction="R_GLYBt6pp">
+ <gene reference="STM4290"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1955" reaction="R_CHITOBpts">
+ <and>
+ <gene reference="STM1314"/>
+ <gene reference="STM1312"/>
+ <gene reference="STM1313"/>
+ <gene reference="STM2431"/>
+ <gene reference="STM2432"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1956" reaction="R_RNAMtpp">
+ <gene reference="STM0757"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1957" reaction="R_OAO5t3pp">
+ <gene reference="STM3926"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1958" reaction="R_TCBt2pp">
+ <gene reference="STM0689"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1959" reaction="R_TTONR1pp">
+ <and>
+ <gene reference="STM1383"/>
+ <gene reference="STM1384"/>
+ <gene reference="STM1385"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1960" reaction="R_TTONR2pp">
+ <and>
+ <gene reference="STM1383"/>
+ <gene reference="STM1384"/>
+ <gene reference="STM1385"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1961" reaction="R_LEUt4rpp">
+ <gene reference="STM0399"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1962" reaction="R_UPLA4NT">
+ <gene reference="STM2298"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1963" reaction="R_PSUDS">
+ <gene reference="STM2662"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1964" reaction="R_PFOR">
+ <or>
+ <and>
+ <gene reference="STM0694"/>
+ <gene reference="STM1651"/>
+ </and>
+ <and>
+ <gene reference="STM3045"/>
+ <gene reference="STM1651"/>
+ </and>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1965" reaction="R_NNDMBRT">
+ <or>
+ <gene reference="STM2016"/>
+ <gene reference="STM1221"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1966" reaction="R_OAL_ST">
+ <gene reference="STM3713"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1967" reaction="R_OA4L_ST">
+ <and>
+ <gene reference="STM1332"/>
+ <gene reference="STM2079"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1968" reaction="R_OA5L_ST">
+ <and>
+ <gene reference="STM1332"/>
+ <gene reference="STM2079"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1969" reaction="R_OA4VL_ST">
+ <and>
+ <gene reference="STM1332"/>
+ <gene reference="STM0589"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1970" reaction="R_OA5VL_ST">
+ <and>
+ <gene reference="STM1332"/>
+ <gene reference="STM0589"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1971" reaction="R_OAO4t3pp">
+ <gene reference="STM3926"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1972" reaction="R_4HTHRtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1973" reaction="R_4HTHRtrpp">
+ <gene reference="STM3243"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1974" reaction="R_4HTHRK">
+ <gene reference="STM0003"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1975" reaction="R_AADDFT">
+ <gene reference="STM3927"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1976" reaction="R_ENTERHpp">
+ <gene reference="STM2776"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1977" reaction="R_SALCHS4Hpp">
+ <gene reference="STM2776"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1978" reaction="R_SALCHS4FEHpp">
+ <gene reference="STM2776"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1979" reaction="R_DHBSZ3FEexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1980" reaction="R_DHBSZ3FEtonex">
+ <and>
+ <or>
+ <gene reference="STM2199"/>
+ <gene reference="STM0585"/>
+ <gene reference="STM2777"/>
+ </or>
+ <gene reference="STM1737"/>
+ <gene reference="STM3159"/>
+ <gene reference="STM3158"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1981" reaction="R_FEDHBZS3R1">
+ <or>
+ <gene reference="STM2775"/>
+ <gene reference="STM0586"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1982" reaction="R_FEDHBZS3R2">
+ <or>
+ <gene reference="STM2775"/>
+ <gene reference="STM0586"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1983" reaction="R_FEDHBZS3R3">
+ <or>
+ <gene reference="STM2775"/>
+ <gene reference="STM0586"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1984" reaction="R_SALCHS2FEexs">
+ <gene reference="s0001"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1985" reaction="R_SALCHS2FEtonex">
+ <gene reference="STM2777"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1986" reaction="R_SALCHS2FEabcpp">
+ <and>
+ <gene reference="STM0594"/>
+ <gene reference="STM0590"/>
+ <gene reference="STM0592"/>
+ <gene reference="STM0591"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_1987" reaction="R_SALCHS2FER1">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1988" reaction="R_SALCHS2FER2">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1989" reaction="R_SALCHS2FER3">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1990" reaction="R_SALCHS2H">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1991" reaction="R_SALCHS1H">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1992" reaction="R_ENTERH">
+ <or>
+ <gene reference="STM2775"/>
+ <gene reference="STM0586"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1993" reaction="R_DHBZS3H">
+ <or>
+ <gene reference="STM2775"/>
+ <gene reference="STM0586"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1994" reaction="R_DHBZS2H">
+ <or>
+ <gene reference="STM2775"/>
+ <gene reference="STM0586"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_1995" reaction="R_ENTERtex">
+ <gene reference="STM3186"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1996" reaction="R_ENTERGLCT1">
+ <gene reference="STM2773"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1997" reaction="R_ENTERGLCT2">
+ <gene reference="STM2773"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1998" reaction="R_FEROXBFER1">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_1999" reaction="R_FEROXBFER2">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2000" reaction="R_FEROXBFER3">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2001" reaction="R_FEROXEFER1">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2002" reaction="R_FEROXEFER2">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2003" reaction="R_FEROXEFER3">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2004" reaction="R_FEROXGFER1">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2005" reaction="R_FEROXGFER2">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2006" reaction="R_FEROXGFER3">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2007" reaction="R_GULNLtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_2008" reaction="R_DXYLUDtex">
+ <or>
+ <gene reference="STM0320"/>
+ <gene reference="STM0999"/>
+ <gene reference="STM1473"/>
+ <gene reference="STM2267"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_2009" reaction="R_MUREINLPPTP">
+ <or>
+ <gene reference="STM0837"/>
+ <gene reference="STM1215"/>
+ <gene reference="STM1375"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_2010" reaction="R_APOLPPS">
+ <gene reference="STM0047"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2011" reaction="R_PROLPPGT160">
+ <gene reference="STM3002"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2012" reaction="R_DMBZIDS">
+ <gene reference="STM2016"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2013" reaction="R_2HH24DDH1">
+ <gene reference="STM1105"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2014" reaction="R_GALCTND">
+ <gene reference="STM3828"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2015" reaction="R_FEENTERR1">
+ <gene reference="STM0586"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2016" reaction="R_FEENTERR2">
+ <gene reference="STM0586"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2017" reaction="R_FEENTERR3">
+ <gene reference="STM0586"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2018" reaction="R_SALCHS4FER1">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2019" reaction="R_SALCHS4FER2">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2020" reaction="R_SALCHS4FER3">
+ <gene reference="STM2775"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2021" reaction="R_SALCHS4FEtonex">
+ <and>
+ <or>
+ <gene reference="STM0585"/>
+ <gene reference="STM2199"/>
+ <gene reference="STM2777"/>
+ </or>
+ <gene reference="STM1737"/>
+ <gene reference="STM3158"/>
+ <gene reference="STM3159"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_2022" reaction="R_HISNH4L">
+ <gene reference="STM0791"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2023" reaction="R_AB6PGH">
+ <gene reference="STM3051"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2024" reaction="R_SARCOX">
+ <gene reference="STM1160"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2025" reaction="R_FE3HOXabcpp">
+ <and>
+ <gene reference="STM0194"/>
+ <gene reference="STM0192"/>
+ <gene reference="STM0193"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_2026" reaction="R_FEOXAMR1">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2027" reaction="R_FEOXAMR2">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2028" reaction="R_FEOXAMR3">
+ <gene reference="STM3979"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2029" reaction="R_ALPATE160pp">
+ <and>
+ <gene reference="STM0666"/>
+ <gene reference="STM1377"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_2030" reaction="R_ALPATG160pp">
+ <and>
+ <gene reference="STM0666"/>
+ <gene reference="STM1377"/>
+ </and>
+ </geneAssociation>
+ <geneAssociation id="ga_2031" reaction="R_HDCAt2pp">
+ <gene reference="STM2391"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2032" reaction="R_OCDCAt2pp">
+ <gene reference="STM2392"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2033" reaction="R_OCDCEAt2pp">
+ <gene reference="STM2392"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2034" reaction="R_TTDCAt2pp">
+ <gene reference="STM2393"/>
+ </geneAssociation>
+ <geneAssociation id="ga_2035" reaction="R_DDCAt2pp">
+ <gene reference="STM2393"/>
+ </geneAssociation>
+ </listOfGeneAssociations>
+ </annotation>
+ <listOfCompartments>
+ <compartment id="p" name="Periplasm" spatialDimensions="3" size="1" constant="true"/>
+ <compartment id="c" name="Cytoplasm" spatialDimensions="3" size="1" constant="true"/>
+ <compartment id="e" name="Extracellular" spatialDimensions="3" size="1" constant="true"/>
+ </listOfCompartments>
+ <listOfSpecies>
+ <species id="M_dcaACP_c" name="Decanoyl-ACP-n-C100ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05755</p>
+ <p>PUBCHEM: 8050</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2aobut_c" name="L-2-Amino-3-oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7NO3</p>
+ <p>CHEBI: 16944</p>
+ <p>KEGG: C03508</p>
+ <p>PUBCHEM: 6318</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pglyc_c" name="2-Phosphoglycolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C2H2O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O6P</p>
+ <p>CHEBI: 17150</p>
+ <p>KEGG: C00988</p>
+ <p>PUBCHEM: 4234</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eig3p_c" name="D-erythro-1-Imidazol-4-yl-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9N2O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N2O6P</p>
+ <p>CHEBI: 17805</p>
+ <p>KEGG: C04666</p>
+ <p>PUBCHEM: 7249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ahbut_c" name="S-2-Aceto-2-hydroxybutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O4</p>
+ <p>CHEBI: 27681 49256</p>
+ <p>KEGG: C06006</p>
+ <p>PUBCHEM: 8279</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_p" name="ferroxamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C07597</p>
+ <p>PUBCHEM: 9799</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_c" name="Pyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>CHEBI: 32816</p>
+ <p>KEGG: C00022</p>
+ <p>PUBCHEM: 3324</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_e" name="Pyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>CHEBI: 32816</p>
+ <p>KEGG: C00022</p>
+ <p>PUBCHEM: 3324</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_p" name="Pyruvate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>CHEBI: 32816</p>
+ <p>KEGG: C00022</p>
+ <p>PUBCHEM: 3324</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdecoa_c" name="Tetradecenoyl-CoA-n-C141CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O17P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06737</p>
+ <p>PUBCHEM: 8959</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg161_c" name="acyl-phosphatidylglycerol-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C54H98O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C54H98O11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_p" name="L-Methionine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>CHEBI: 16643</p>
+ <p>KEGG: C00073</p>
+ <p>PUBCHEM: 3373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_e" name="Xanthosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>CHEBI: 18107</p>
+ <p>KEGG: C01762</p>
+ <p>PUBCHEM: 4895</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_e" name="L-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 16977</p>
+ <p>KEGG: C00041</p>
+ <p>PUBCHEM: 3343</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_c" name="L-Alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 16977</p>
+ <p>KEGG: C00041</p>
+ <p>PUBCHEM: 3343</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_c" name="octanoate-n-C80" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>CHEBI: 28837</p>
+ <p>KEGG: C06423</p>
+ <p>PUBCHEM: 8658</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_e" name="L-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>CHEBI: 16643</p>
+ <p>KEGG: C00073</p>
+ <p>PUBCHEM: 3373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hmrsACP_c" name="R-3-Hydroxytetradecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H47N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04688</p>
+ <p>PUBCHEM: 7269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_c" name="L-Methionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>CHEBI: 16643</p>
+ <p>KEGG: C00073</p>
+ <p>PUBCHEM: 3373</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_p" name="octanoate-n-C80" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>CHEBI: 28837</p>
+ <p>KEGG: C06423</p>
+ <p>PUBCHEM: 8658</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_p" name="L-Alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 16977</p>
+ <p>KEGG: C00041</p>
+ <p>PUBCHEM: 3343</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_p" name="beta-Alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 16958</p>
+ <p>KEGG: C00099</p>
+ <p>PUBCHEM: 3399</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_e" name="beta-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 16958</p>
+ <p>KEGG: C00099</p>
+ <p>PUBCHEM: 3399</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_e" name="R-Pantothenate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ <p>KEGG: C00864</p>
+ <p>PUBCHEM: 4121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_c" name="beta-Alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 16958</p>
+ <p>KEGG: C00099</p>
+ <p>PUBCHEM: 3399</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_8aonn_c" name="8-Amino-7-oxononanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H17NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H17NO3</p>
+ <p>CHEBI: 12266 15830</p>
+ <p>KEGG: C01092</p>
+ <p>PUBCHEM: 4327</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmso_e" name="Dimethyl-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6OS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>CHEBI: 28262</p>
+ <p>KEGG: C11143</p>
+ <p>PUBCHEM: 13325</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_c" name="R-Pantothenate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ <p>KEGG: C00864</p>
+ <p>PUBCHEM: 4121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe180_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H48NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_e" name="5-Dehydro-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 17426</p>
+ <p>KEGG: C01062</p>
+ <p>PUBCHEM: 4301</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmso_p" name="Dimethyl-sulfoxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6OS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>CHEBI: 28262</p>
+ <p>KEGG: C11143</p>
+ <p>PUBCHEM: 13325</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps141_c" name="phosphatidylserine-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H61N1O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61N1O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ <p>PUBCHEM: 5698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbt6p_c" name="Arbutin-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H15O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H15O10P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06187</p>
+ <p>PUBCHEM: 8438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe180_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H48NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uamag_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H39N5O23P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H39N5O23P2</p>
+ <p>CHEBI: 16970</p>
+ <p>KEGG: C00692</p>
+ <p>PUBCHEM: 3960</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pmcoa_c" name="Pimeloyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C28H41N7O19P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H41N7O19P3S</p>
+ <p>CHEBI: 15504</p>
+ <p>KEGG: C01063</p>
+ <p>PUBCHEM: 4302</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_atp_c" name="ATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O13P3</p>
+ <p>CHEBI: 15422</p>
+ <p>KEGG: C00002</p>
+ <p>PUBCHEM: 3304</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_e" name="UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHEBI: 16695</p>
+ <p>KEGG: C00105</p>
+ <p>PUBCHEM: 3405</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_e" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_p" name="UMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHEBI: 16695</p>
+ <p>KEGG: C00105</p>
+ <p>PUBCHEM: 3405</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_coa_c" name="Coenzyme-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H32N7O16P3S</p>
+ <p>CHEBI: 15346</p>
+ <p>KEGG: C00010</p>
+ <p>PUBCHEM: 3312</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDglu_c" name="L-alanine-D-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_p" name="Deoxyinosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>CHEBI: 28997</p>
+ <p>KEGG: C05512</p>
+ <p>PUBCHEM: 7859</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hbcoa_c" name="S-3-Hydroxybutanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H38N7O18P3S</p>
+ <p>CHEBI: 15453</p>
+ <p>KEGG: C01144</p>
+ <p>PUBCHEM: 4375</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dutp_c" name="dUTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O14P3</p>
+ <p>CHEBI: 17625</p>
+ <p>KEGG: C00460</p>
+ <p>PUBCHEM: 3744</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_c" name="Deoxyinosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>CHEBI: 28997</p>
+ <p>KEGG: C05512</p>
+ <p>PUBCHEM: 7859</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crnDcoa_c" name="D-carnitinyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O18P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 605</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_e" name="Deoxyinosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>CHEBI: 28997</p>
+ <p>KEGG: C05512</p>
+ <p>PUBCHEM: 7859</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur1p_e" name="D-Glucuronate-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>CHEBI: 28547</p>
+ <p>KEGG: C05385</p>
+ <p>PUBCHEM: 7759</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ohph_c" name="2-Octaprenyl-6-hydroxyphenol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C46H70O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C46H70O2</p>
+ <p>CHEBI: 1233</p>
+ <p>KEGG: C05811</p>
+ <p>PUBCHEM: 8106</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_p" name="GTP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>CHEBI: 15996</p>
+ <p>KEGG: C00044</p>
+ <p>PUBCHEM: 3346</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amob_c" name="S-Adenosyl-4-methylthio-2-oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C15H19N5O6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O6S</p>
+ <p>CHEBI: 16490</p>
+ <p>KEGG: C04425</p>
+ <p>PUBCHEM: 7057</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp3Oag_p" name="Undecaprenyl-diphosphate-O-antigene-3x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C127H210O58P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C127H210O58P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_e" name="GTP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>CHEBI: 15996</p>
+ <p>KEGG: C00044</p>
+ <p>PUBCHEM: 3346</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_c" name="GTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>CHEBI: 15996</p>
+ <p>KEGG: C00044</p>
+ <p>PUBCHEM: 3346</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyst__L_c" name="L-Cystathionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4S</p>
+ <p>CHEBI: 17482</p>
+ <p>KEGG: C02291</p>
+ <p>PUBCHEM: 5347</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_p" name="Adenosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHEBI: 16335</p>
+ <p>KEGG: C00212</p>
+ <p>PUBCHEM: 3512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3mop_c" name="S-3-Methyl-2-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O3</p>
+ <p>CHEBI: 15614</p>
+ <p>KEGG: C00671</p>
+ <p>PUBCHEM: 3940</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_p" name="Cob-I-alamin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>CHEBI: 15982</p>
+ <p>KEGG: C00853</p>
+ <p>PUBCHEM: 4110</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_valtrna_c" name="L-Valyl-tRNA-Val" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10NOR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NOR</p>
+ <p>CHEBI: 29164</p>
+ <p>KEGG: C02554</p>
+ <p>PUBCHEM: 5555</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_p" name="Nitrite" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>CHEBI: 16301</p>
+ <p>KEGG: C00088</p>
+ <p>PUBCHEM: 3388</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_p" name="fe3dhbzs3_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_c" name="Cob-I-alamin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>CHEBI: 15982</p>
+ <p>KEGG: C00853</p>
+ <p>PUBCHEM: 4110</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_e" name="Cob-I-alamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>CHEBI: 15982</p>
+ <p>KEGG: C00853</p>
+ <p>PUBCHEM: 4110</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_e" name="Nitrite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>CHEBI: 16301</p>
+ <p>KEGG: C00088</p>
+ <p>PUBCHEM: 3388</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_e" name="fe3dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_c" name="fe3dhbzs3_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_c" name="Nitrite" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>CHEBI: 16301</p>
+ <p>KEGG: C00088</p>
+ <p>PUBCHEM: 3388</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mecdp_c" name="2-C-methyl-D-erythritol-2-4-cyclodiphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H10O9P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O9P2</p>
+ <p>CHEBI: 18425</p>
+ <p>KEGG: C11453</p>
+ <p>PUBCHEM: 13625</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ncam_c" name="Nicotinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H6N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6N2O</p>
+ <p>CHEBI: 17154</p>
+ <p>KEGG: C00153</p>
+ <p>PUBCHEM: 3453</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_p" name="KDO-2-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>CHEBI: 27963</p>
+ <p>KEGG: C06026</p>
+ <p>PUBCHEM: 8298</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ombzl_c" name="2-Octaprenyl-6-methoxy-1-4-benzoquinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C47H72O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H72O3</p>
+ <p>CHEBI: 17551</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 958 ??5650</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_e" name="KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>CHEBI: 27963</p>
+ <p>KEGG: C06026</p>
+ <p>PUBCHEM: 8298</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb6p_c" name="L-ascorbate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O9P</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 656479???3385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_c" name="KDO-2-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>CHEBI: 27963</p>
+ <p>KEGG: C06026</p>
+ <p>PUBCHEM: 8298</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbp_c" name="Carbamoyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CH2NO5P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2NO5P</p>
+ <p>CHEBI: 17672</p>
+ <p>KEGG: C00169</p>
+ <p>PUBCHEM: 3469</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_e" name="aerobactin-minus-Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_c" name="L-Asparagine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H8N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>CHEBI: 17196</p>
+ <p>KEGG: C00152</p>
+ <p>PUBCHEM: 3452</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_e" name="L-Asparagine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H8N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>CHEBI: 17196</p>
+ <p>KEGG: C00152</p>
+ <p>PUBCHEM: 3452</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_p" name="D-Alanyl-D-alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>CHEBI: 16576</p>
+ <p>KEGG: C00993</p>
+ <p>PUBCHEM: 4239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_c" name="aerobactin-minus-Fe3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_e" name="D-Alanyl-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>CHEBI: 16576</p>
+ <p>KEGG: C00993</p>
+ <p>PUBCHEM: 4239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_p" name="L-Asparagine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H8N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>CHEBI: 17196</p>
+ <p>KEGG: C00152</p>
+ <p>PUBCHEM: 3452</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2omph_c" name="2-Octaprenyl-6-methoxyphenol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C47H72O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H72O2</p>
+ <p>CHEBI: 1235</p>
+ <p>KEGG: C05812</p>
+ <p>PUBCHEM: 8107</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_p" name="aerobactin-minus-Fe3" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_c" name="D-Alanyl-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>CHEBI: 16576</p>
+ <p>KEGG: C00993</p>
+ <p>PUBCHEM: 4239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_p" name="Hydrogen-peroxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>CHEBI: 16240</p>
+ <p>KEGG: C00027</p>
+ <p>PUBCHEM: 3329</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5aizc_c" name="5-amino-1-5-phospho-D-ribosyl-imidazole-4-carboxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N3O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O9P</p>
+ <p>CHEBI: 28413</p>
+ <p>KEGG: C04751</p>
+ <p>PUBCHEM: 7321</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl7_c" name="Cobalt-precorrin-7" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H49CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H49CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16244</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_c" name="Hydrogen-peroxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>CHEBI: 16240</p>
+ <p>KEGG: C00027</p>
+ <p>PUBCHEM: 3329</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nflgln_c" name="N-Formimino-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N2O4</p>
+ <p>CHEBI: 7274</p>
+ <p>KEGG: C00439</p>
+ <p>PUBCHEM: 3728</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_e" name="Hydrogen-peroxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>CHEBI: 16240</p>
+ <p>KEGG: C00027</p>
+ <p>PUBCHEM: 3329</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hddecACP_c" name="R-3-Hydroxydodecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H43N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05757</p>
+ <p>PUBCHEM: 8052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhba_c" name="2-3-Dihydroxybenzoyl-adenylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H17N5O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H17N5O10P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04030</p>
+ <p>PUBCHEM: 6734</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_e" name="octanoate-n-C80" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>CHEBI: 28837</p>
+ <p>KEGG: C06423</p>
+ <p>PUBCHEM: 8658</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acglu_c" name="N-Acetyl-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9NO5</p>
+ <p>CHEBI: 17533 44337</p>
+ <p>KEGG: C00624</p>
+ <p>PUBCHEM: 3897</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_p" name="tetradecanoate-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>CHEBI: 28875 30807</p>
+ <p>KEGG: C06424</p>
+ <p>PUBCHEM: 8659</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl3_c" name="Cobalt-precorrin-3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C43H41CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H41CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11539</p>
+ <p>PUBCHEM: 13706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cddec5eACP_c" name="cis-dodec-5-enoyl-acyl-carrier-protein-n-C121" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_e" name="tetradecanoate-n-C140" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>CHEBI: 28875 30807</p>
+ <p>KEGG: C06424</p>
+ <p>PUBCHEM: 8659</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_c" name="tetradecanoate-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>CHEBI: 28875 30807</p>
+ <p>KEGG: C06424</p>
+ <p>PUBCHEM: 8659</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_c" name="Uracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H4N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>CHEBI: 17568</p>
+ <p>KEGG: C00106</p>
+ <p>PUBCHEM: 3406</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_e" name="Glycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>CHEBI: 17754</p>
+ <p>KEGG: C00116</p>
+ <p>PUBCHEM: 3416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_c" name="Glycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>CHEBI: 17754</p>
+ <p>KEGG: C00116</p>
+ <p>PUBCHEM: 3416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_e" name="Uracil" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H4N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>CHEBI: 17568</p>
+ <p>KEGG: C00106</p>
+ <p>PUBCHEM: 3406</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum_p" name="N-Acetylmuramate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02713</p>
+ <p>PUBCHEM: 5676</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_au_c" name="Gold-Au" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 29287</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_p" name="Uracil" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H4N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>CHEBI: 17568</p>
+ <p>KEGG: C00106</p>
+ <p>PUBCHEM: 3406</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4p_c" name="KDO-2-lipid-IV-A-with-palmitoleoyl" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C100H176N2O38P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C100H176N2O38P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_p" name="Glycerol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>CHEBI: 17754</p>
+ <p>KEGG: C00116</p>
+ <p>PUBCHEM: 3416</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chit6p_c" name="chit6p_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 853844</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_p" name="Trehalose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 16551</p>
+ <p>KEGG: C01083</p>
+ <p>PUBCHEM: 4320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_c" name="Trehalose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 16551</p>
+ <p>KEGG: C01083</p>
+ <p>PUBCHEM: 4320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpglc_c" name="CDP-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H23N3O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H23N3O16P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00501</p>
+ <p>PUBCHEM: 3784</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_e" name="Trehalose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 16551</p>
+ <p>KEGG: C01083</p>
+ <p>PUBCHEM: 4320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps2_ST_p" name="ps2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_p" name="L-Serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHEBI: 17115</p>
+ <p>KEGG: C00065</p>
+ <p>PUBCHEM: 3365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_p" name="Acetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>CHEBI: 15366</p>
+ <p>KEGG: C00033</p>
+ <p>PUBCHEM: 3335</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_c" name="L-Serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHEBI: 17115</p>
+ <p>KEGG: C00065</p>
+ <p>PUBCHEM: 3365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_e" name="L-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHEBI: 17115</p>
+ <p>KEGG: C00065</p>
+ <p>PUBCHEM: 3365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ahmmp_c" name="4-Amino-5-hydroxymethyl-2-methylpyrimidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O</p>
+ <p>CHEBI: 16892</p>
+ <p>KEGG: C01279</p>
+ <p>PUBCHEM: 4498</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhmb_c" name="R-2-3-Dihydroxy-3-methylbutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O4</p>
+ <p>CHEBI: 15684 49072</p>
+ <p>KEGG: C04272</p>
+ <p>PUBCHEM: 6935</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_c" name="Acetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>CHEBI: 15366</p>
+ <p>KEGG: C00033</p>
+ <p>PUBCHEM: 3335</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_e" name="Acetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>CHEBI: 15366</p>
+ <p>KEGG: C00033</p>
+ <p>PUBCHEM: 3335</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odecg3p_c" name="2-octadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H42O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_p" name="Thiocyanate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>CHEBI: 29200</p>
+ <p>KEGG: C01755</p>
+ <p>PUBCHEM: 4888</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dmmql8_c" name="2-Demethylmenaquinol-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C50H72O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C50H72O2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbzcoa_c" name="O-Succinylbenzoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C32H39N7O20P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C32H39N7O20P3S</p>
+ <p>CHEBI: 15509</p>
+ <p>KEGG: C03160</p>
+ <p>PUBCHEM: 6045</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_e" name="Thiocyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>CHEBI: 29200</p>
+ <p>KEGG: C01755</p>
+ <p>PUBCHEM: 4888</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_c" name="Thiocyanate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>CHEBI: 29200</p>
+ <p>KEGG: C01755</p>
+ <p>PUBCHEM: 4888</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_p" name="Cobinamide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>CHEBI: 28956</p>
+ <p>KEGG: C05774</p>
+ <p>PUBCHEM: 8069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm3p_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H52N6O19">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H52N6O19</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_c" name="Acetaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>CHEBI: 15343</p>
+ <p>KEGG: C00084</p>
+ <p>PUBCHEM: 3384</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_p" name="core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr141_c" name="1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H56O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H56O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_e" name="Acetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>CHEBI: 15343</p>
+ <p>KEGG: C00084</p>
+ <p>PUBCHEM: 3384</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_c" name="Cobinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>CHEBI: 28956</p>
+ <p>KEGG: C05774</p>
+ <p>PUBCHEM: 8069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_e" name="Cobinamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>CHEBI: 28956</p>
+ <p>KEGG: C05774</p>
+ <p>PUBCHEM: 8069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_c" name="core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_p" name="Acetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>CHEBI: 15343</p>
+ <p>KEGG: C00084</p>
+ <p>PUBCHEM: 3384</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_e" name="core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr141_p" name="1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H56O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H56O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_c" name="Xanthosine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>CHEBI: 15652</p>
+ <p>KEGG: C00655</p>
+ <p>PUBCHEM: 3925</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_e" name="Xanthosine-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>CHEBI: 15652</p>
+ <p>KEGG: C00655</p>
+ <p>PUBCHEM: 3925</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_p" name="magnesium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>CHEBI: 18420</p>
+ <p>KEGG: C00305</p>
+ <p>PUBCHEM: 3599</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_p" name="Xanthosine-5-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>CHEBI: 15652</p>
+ <p>KEGG: C00655</p>
+ <p>PUBCHEM: 3925</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmalt_c" name="Acetyl-maltose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C14H24O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H24O12</p>
+ <p>CHEBI: 2411</p>
+ <p>KEGG: C02130</p>
+ <p>PUBCHEM: 5209</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhpmp_c" name="Dihydroneopterin-monophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N5O7P</p>
+ <p>CHEBI: 48954</p>
+ <p>KEGG: C05925</p>
+ <p>PUBCHEM: 8213</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_e" name="magnesium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>CHEBI: 18420</p>
+ <p>KEGG: C00305</p>
+ <p>PUBCHEM: 3599</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_c" name="magnesium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>CHEBI: 18420</p>
+ <p>KEGG: C00305</p>
+ <p>PUBCHEM: 3599</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhq_c" name="3-Dehydroquinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O6</p>
+ <p>CHEBI: 17947 32364</p>
+ <p>KEGG: C00944</p>
+ <p>PUBCHEM: 4196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhptd_c" name="4-5-dihydroxy-2-3-pentanedione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H8O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11838</p>
+ <p>PUBCHEM: 14000</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uLa4n_p" name="undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C60H100N1O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H100N1O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_minohp_p" name="myo-Inositol-hexakisphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>CHEBI: 17401</p>
+ <p>KEGG: C01204</p>
+ <p>PUBCHEM: 4428</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_p" name="Ammonium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>CHEBI: 28938</p>
+ <p>KEGG: C01342</p>
+ <p>PUBCHEM: 4547</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_e" name="Inosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>CHEBI: 17596</p>
+ <p>KEGG: C00294</p>
+ <p>PUBCHEM: 3588</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uLa4n_c" name="undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C60H100N1O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H100N1O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_e" name="Ammonium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>CHEBI: 28938</p>
+ <p>KEGG: C01342</p>
+ <p>PUBCHEM: 4547</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_c" name="Ammonium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>CHEBI: 28938</p>
+ <p>KEGG: C01342</p>
+ <p>PUBCHEM: 4547</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_minohp_e" name="myo-Inositol-hexakisphosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>CHEBI: 17401</p>
+ <p>KEGG: C01204</p>
+ <p>PUBCHEM: 4428</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mdru1p_c" name="5-Methylthio-5-deoxy-D-ribulose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7PS</p>
+ <p>CHEBI: 28096</p>
+ <p>KEGG: C04582</p>
+ <p>PUBCHEM: 7183</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_e" name="salchs2_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_c" name="salchs2_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dr5p_c" name="2-Deoxy-D-ribose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>CHEBI: 16132</p>
+ <p>KEGG: C00673</p>
+ <p>PUBCHEM: 3942</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_p" name="salchs2_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe160_p" name="phosphatidylethanolamine-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H74N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H74N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p5p_p" name="two-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C80H124N16O42">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C80H124N16O42</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe160_c" name="phosphatidylethanolamine-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H74N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H74N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_e" name="GDP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>CHEBI: 17552</p>
+ <p>KEGG: C00035</p>
+ <p>PUBCHEM: 3337</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_c" name="GDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>CHEBI: 17552</p>
+ <p>KEGG: C00035</p>
+ <p>PUBCHEM: 3337</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre6p_c" name="alpha-alpha-Trehalose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H21O14P</p>
+ <p>CHEBI: 18283</p>
+ <p>KEGG: C00689</p>
+ <p>PUBCHEM: 3958</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5aop_c" name="5-Amino-4-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>CHEBI: 17549</p>
+ <p>KEGG: C00430</p>
+ <p>PUBCHEM: 3719</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_p" name="GDP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>CHEBI: 17552</p>
+ <p>KEGG: C00035</p>
+ <p>PUBCHEM: 3337</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mta_c" name="5-Methylthioadenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H15N5O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H15N5O3S</p>
+ <p>CHEBI: 17509</p>
+ <p>KEGG: C00170</p>
+ <p>PUBCHEM: 3470</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdecg3p_c" name="1-tetradecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H33O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H33O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_c" name="5-Dehydro-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 17426</p>
+ <p>KEGG: C01062</p>
+ <p>PUBCHEM: 4301</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3c3hmp_c" name="3-Carboxy-3-hydroxy-4-methylpentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O5</p>
+ <p>CHEBI: 1178 35128</p>
+ <p>KEGG: C02504</p>
+ <p>PUBCHEM: 5516</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddcacoa_c" name="Dodecanoyl-CoA-n-C120CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H54N7O17P3S</p>
+ <p>CHEBI: 15521</p>
+ <p>KEGG: C01832</p>
+ <p>PUBCHEM: 4951</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_e" name="S-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHEBI: 29002</p>
+ <p>KEGG: C02917</p>
+ <p>PUBCHEM: 5840</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_c" name="S-Propane-1-2-diol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHEBI: 29002</p>
+ <p>KEGG: C02917</p>
+ <p>PUBCHEM: 5840</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdecg3p_p" name="1-tetradecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H33O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H33O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmfurn_c" name="4-hydroxy-5-methyl-3-2H-furanone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6O3</p>
+ <p>CHEBI: 11851 16530</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 4564493??3441</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_p" name="S-Propane-1-2-diol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHEBI: 29002</p>
+ <p>KEGG: C02917</p>
+ <p>PUBCHEM: 5840</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp12Oag_p" name="Undecaprenyl-diphosphate-O-antigene-12x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C343H570O211P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C343H570O211P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p4p_p" name="two-linked-disacharide-pentapeptide-and-tetrapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C77H119N15O41">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C77H119N15O41</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaarg_c" name="tRNA-Arg" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29171</p>
+ <p>KEGG: C01636</p>
+ <p>PUBCHEM: 4785</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4pasp_c" name="4-Phospho-L-aspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6NO7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO7P</p>
+ <p>CHEBI: 15836</p>
+ <p>KEGG: C03082</p>
+ <p>PUBCHEM: 5980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_c" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_e" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_p" name="Cytosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>CHEBI: 16040</p>
+ <p>KEGG: C00380</p>
+ <p>PUBCHEM: 3670</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_p" name="5-Dehydro-D-gluconate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 17426</p>
+ <p>KEGG: C01062</p>
+ <p>PUBCHEM: 4301</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp15Oag_p" name="Undecaprenyl-diphosphate-O-antigene-15x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C415H690O262P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C415H690O262P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam1p_c" name="D-Glucosamine-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHEBI: 27625</p>
+ <p>KEGG: C06156</p>
+ <p>PUBCHEM: 8412</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_c" name="Cytosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>CHEBI: 16040</p>
+ <p>KEGG: C00380</p>
+ <p>PUBCHEM: 3670</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_e" name="Cytosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>CHEBI: 16040</p>
+ <p>KEGG: C00380</p>
+ <p>PUBCHEM: 3670</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_p" name="alpha-D-Galactose-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 17973</p>
+ <p>KEGG: C00446</p>
+ <p>PUBCHEM: 3734</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtbt_c" name="Dethiobiotin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N2O3</p>
+ <p>CHEBI: 16691</p>
+ <p>KEGG: C01909</p>
+ <p>PUBCHEM: 5017</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3mob_c" name="3-Methyl-2-oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O3</p>
+ <p>CHEBI: 11851 16530</p>
+ <p>KEGG: C00141</p>
+ <p>PUBCHEM: 3441</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_e" name="alpha-D-Galactose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 17973</p>
+ <p>KEGG: C00446</p>
+ <p>PUBCHEM: 3734</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_25drapp_c" name="2-5-Diamino-6-ribosylamino-4-3H-pyrimidinone-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H14N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H14N5O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_c" name="alpha-D-Galactose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 17973</p>
+ <p>KEGG: C00446</p>
+ <p>PUBCHEM: 3734</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_c" name="UMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHEBI: 16695</p>
+ <p>KEGG: C00105</p>
+ <p>PUBCHEM: 3405</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg160_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H44O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xdp_c" name="XDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O12P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O12P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01337</p>
+ <p>PUBCHEM: 4545</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnagly_c" name="tRNA-Gly" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29176</p>
+ <p>KEGG: C01642</p>
+ <p>PUBCHEM: 4791</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_e" name="Xanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>CHEBI: 17712</p>
+ <p>KEGG: C00385</p>
+ <p>PUBCHEM: 3675</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4h2kpi_c" name="4-Hydroxy-2-ketopimelate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05601</p>
+ <p>PUBCHEM: 7924</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_c" name="Xanthine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>CHEBI: 17712</p>
+ <p>KEGG: C00385</p>
+ <p>PUBCHEM: 3675</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_p" name="Protoheme" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>CHEBI: 17627</p>
+ <p>KEGG: C00032</p>
+ <p>PUBCHEM: 3334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_p" name="Salmochelin-SX" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6hmhpt_c" name="6-hydroxymethyl-dihydropterin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H9N5O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9N5O2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_p" name="Xanthine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>CHEBI: 17712</p>
+ <p>KEGG: C00385</p>
+ <p>PUBCHEM: 3675</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum6p_c" name="N-acetylmuramate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H17NO11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H17NO11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_iasp_c" name="Iminoaspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H3NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H3NO4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05840</p>
+ <p>PUBCHEM: 8133</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_didp_c" name="dIDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O10P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01344</p>
+ <p>PUBCHEM: 4549</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg161_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_e" name="Hypoxanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>CHEBI: 17368</p>
+ <p>KEGG: C00262</p>
+ <p>PUBCHEM: 3560</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_c" name="Hypoxanthine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>CHEBI: 17368</p>
+ <p>KEGG: C00262</p>
+ <p>PUBCHEM: 3560</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_p" name="Salmochelin-S4" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H47N3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg161_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_p" name="Hypoxanthine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>CHEBI: 17368</p>
+ <p>KEGG: C00262</p>
+ <p>PUBCHEM: 3560</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_p" name="Propionate-n-C30" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>CHEBI: 30768</p>
+ <p>KEGG: C00163</p>
+ <p>PUBCHEM: 3463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_c" name="Spermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>CHEBI: 16610</p>
+ <p>KEGG: C00315</p>
+ <p>PUBCHEM: 3609</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_e" name="Spermidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>CHEBI: 16610</p>
+ <p>KEGG: C00315</p>
+ <p>PUBCHEM: 3609</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein3px3p_p" name="two-disacharide-linked-murein-units-tripeptide-crosslinked-tripeptide-A2pm-A2pm--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C68H102N12O37">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H102N12O37</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_p" name="Spermidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>CHEBI: 16610</p>
+ <p>KEGG: C00315</p>
+ <p>PUBCHEM: 3609</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_c" name="Propionate-n-C30" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>CHEBI: 30768</p>
+ <p>KEGG: C00163</p>
+ <p>PUBCHEM: 3463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_e" name="Propionate-n-C30" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>CHEBI: 30768</p>
+ <p>KEGG: C00163</p>
+ <p>PUBCHEM: 3463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbgrd_p" name="periplasmic-disulfide-isomerasethiol-disulphide-oxidase-reduced" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hexACP_c" name="Hexanoyl-ACP-n-C60ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05749</p>
+ <p>PUBCHEM: 8044</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_c" name="dCMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>CHEBI: 15918</p>
+ <p>KEGG: C00239</p>
+ <p>PUBCHEM: 3538</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal__bD_e" name="beta-D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 28260</p>
+ <p>KEGG: C01582</p>
+ <p>PUBCHEM: 4738</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_e" name="dCMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>CHEBI: 15918</p>
+ <p>KEGG: C00239</p>
+ <p>PUBCHEM: 3538</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg120_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H36O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_p" name="dCMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>CHEBI: 15918</p>
+ <p>KEGG: C00239</p>
+ <p>PUBCHEM: 3538</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg120_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H36O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_c" name="L-Fucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 2181</p>
+ <p>KEGG: C01019</p>
+ <p>PUBCHEM: 4264</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_e" name="L-Fucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 2181</p>
+ <p>KEGG: C01019</p>
+ <p>PUBCHEM: 4264</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocpalm9eACP_c" name="3-oxo-cis-palm-9-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H47N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H47N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppi_c" name="Diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO7P2</p>
+ <p>CHEBI: 18361 29888</p>
+ <p>KEGG: C00013</p>
+ <p>PUBCHEM: 3315</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oxam_c" name="Oxamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2NO3</p>
+ <p>CHEBI: 18058</p>
+ <p>KEGG: C01444</p>
+ <p>PUBCHEM: 4622</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malACP_c" name="Malonyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H22N2O10PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N2O10PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01209</p>
+ <p>PUBCHEM: 4431</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_p" name="L-Fucose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 2181</p>
+ <p>KEGG: C01019</p>
+ <p>PUBCHEM: 4264</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uaagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-N-acetylglucosamine-L-ala-D-glu-meso-2-6-diaminopimeloyl-D-ala-D-ala" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C95H152N8O28P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C95H152N8O28P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05898</p>
+ <p>PUBCHEM: 8186</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5apru_c" name="5-Amino-6-5-phosphoribosylamino-uracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N4O9P</p>
+ <p>CHEBI: 18337</p>
+ <p>KEGG: C01268</p>
+ <p>PUBCHEM: 4487</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_p" name="Guanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>CHEBI: 16235</p>
+ <p>KEGG: C00242</p>
+ <p>PUBCHEM: 3541</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fprica_c" name="5-Formamido-1-5-phospho-D-ribosyl-imidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N4O9P</p>
+ <p>CHEBI: 18381</p>
+ <p>KEGG: C04734</p>
+ <p>PUBCHEM: 7305</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu5sa_c" name="L-Glutamate-5-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>CHEBI: 17232</p>
+ <p>KEGG: C01165</p>
+ <p>PUBCHEM: 4392</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmet_p" name="S-Methyl-L-methionine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>CHEBI: 17728</p>
+ <p>KEGG: C03172</p>
+ <p>PUBCHEM: 6054</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_c" name="D-Galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4139</p>
+ <p>KEGG: C00124</p>
+ <p>PUBCHEM: 3424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_e" name="D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4139</p>
+ <p>KEGG: C00124</p>
+ <p>PUBCHEM: 3424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmet_e" name="S-Methyl-L-methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>CHEBI: 17728</p>
+ <p>KEGG: C03172</p>
+ <p>PUBCHEM: 6054</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_p" name="D-Galactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4139</p>
+ <p>KEGG: C00124</p>
+ <p>PUBCHEM: 3424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gar_c" name="N1-5-Phospho-D-ribosyl-glycinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H14N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O8P</p>
+ <p>CHEBI: 18349</p>
+ <p>KEGG: C03838</p>
+ <p>PUBCHEM: 6578</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur1p_p" name="D-Glucuronate-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>CHEBI: 28547</p>
+ <p>KEGG: C05385</p>
+ <p>PUBCHEM: 7759</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_e" name="Salmochelin-S4-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_p" name="Cytidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>CHEBI: 17562</p>
+ <p>KEGG: C00475</p>
+ <p>PUBCHEM: 3758</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_c" name="Salmochelin-S4-Fe-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_c" name="Cytidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>CHEBI: 17562</p>
+ <p>KEGG: C00475</p>
+ <p>PUBCHEM: 3758</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpp_p" name="Undecaprenyl-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C55H89O4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O4P</p>
+ <p>CHEBI: 16141</p>
+ <p>KEGG: C00348</p>
+ <p>PUBCHEM: 3641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_p" name="Salmochelin-S4-Fe-III" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_e" name="Cytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>CHEBI: 17562</p>
+ <p>KEGG: C00475</p>
+ <p>PUBCHEM: 3758</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tpr3dpcoa_c" name="2--5--triphosphoribosyl-3-dephospho-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C26H40N7O26P5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C26H40N7O26P5S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg180_c" name="Phosphatidylglycerol-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H82O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H82O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn120_p" name="cardiolipin-tetradodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C57H108O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C57H108O17P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ <p>PUBCHEM: 8259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_p" name="Ferrioxamine-E-fe" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 167864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_c" name="Guanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>CHEBI: 16235</p>
+ <p>KEGG: C00242</p>
+ <p>PUBCHEM: 3541</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbaox_p" name="periplasmic-protein-disulfide-isomerase-I-oxidized" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_c" name="Ferrioxamine-E-fe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 167864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_e" name="Guanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>CHEBI: 16235</p>
+ <p>KEGG: C00242</p>
+ <p>PUBCHEM: 3541</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_e" name="Ferrioxamine-E-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 167864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_e" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-15" fbc:chemicalFormula="C272H447N14O160P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4d6dg_c" name="dTDP-4-dehydro-6-deoxy-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H22N2O15P2</p>
+ <p>CHEBI: 16128</p>
+ <p>KEGG: C00687</p>
+ <p>PUBCHEM: 3956</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_halipa_e" name="hepta-acylated-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C126H226N2O40P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C126H226N2O40P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpabeq_c" name="CDP-abequose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H23N3O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H23N3O14P2</p>
+ <p>CHEBI: 16049</p>
+ <p>KEGG: C01788</p>
+ <p>PUBCHEM: 4916</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psd5p_c" name="psd5p_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 18116</p>
+ <p>KEGG: C01168</p>
+ <p>PUBCHEM: 4395</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_p" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-15" fbc:chemicalFormula="C272H447N14O160P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_c" name="coprogen-unloaded-no-Fe-III-" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_e" name="coprogen-unloaded-no-Fe-III-" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trdox_c" name="Oxidized-thioredoxin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHEBI: 18191</p>
+ <p>KEGG: C00343</p>
+ <p>PUBCHEM: 3636</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_p" name="coprogen-unloaded-no-Fe-III-" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa140_c" name="1-2-ditetradecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H59O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H59O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdecg3p_p" name="1-hexadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H37O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adpglc_c" name="ADPglucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O15P2</p>
+ <p>CHEBI: 15751</p>
+ <p>KEGG: C00498</p>
+ <p>PUBCHEM: 3781</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acg5sa_c" name="N-Acetyl-L-glutamate-5-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10NO4</p>
+ <p>CHEBI: 16319 29123</p>
+ <p>KEGG: C01250</p>
+ <p>PUBCHEM: 4470</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa140_p" name="1-2-ditetradecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H59O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H59O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2me4p_c" name="2-C-methyl-D-erythritol-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H11O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11O7P</p>
+ <p>CHEBI: 17764</p>
+ <p>KEGG: C11434</p>
+ <p>PUBCHEM: 13606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt6p_c" name="Maltose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H21O14P</p>
+ <p>CHEBI: 15703</p>
+ <p>KEGG: C02995</p>
+ <p>PUBCHEM: 5904</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_c" name="Reduced-glutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>CHEBI: 16856</p>
+ <p>KEGG: C00051</p>
+ <p>PUBCHEM: 3353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4p4p_p" name="two-linked-disacharide-tetrapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H114N14O40">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H114N14O40</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_p" name="Aerobactin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>CHEBI: 18157</p>
+ <p>KEGG: C05554</p>
+ <p>PUBCHEM: 7887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5prdmbz_c" name="N1-5-Phospho-alpha-D-ribosyl-5-6-dimethylbenzimidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N2O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H17N2O7P</p>
+ <p>CHEBI: 16837</p>
+ <p>KEGG: C04778</p>
+ <p>PUBCHEM: 7342</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_e" name="Shikimate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>CHEBI: 16119</p>
+ <p>KEGG: C00493</p>
+ <p>PUBCHEM: 3776</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_c" name="Adenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHEBI: 16335</p>
+ <p>KEGG: C00212</p>
+ <p>PUBCHEM: 3512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_c" name="Aerobactin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>CHEBI: 18157</p>
+ <p>KEGG: C05554</p>
+ <p>PUBCHEM: 7887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_e" name="Aerobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>CHEBI: 18157</p>
+ <p>KEGG: C05554</p>
+ <p>PUBCHEM: 7887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_c" name="Enterochelin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H27N3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>CHEBI: 28855</p>
+ <p>KEGG: C05821</p>
+ <p>PUBCHEM: 8116</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_entermg_c" name="entermg_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_p" name="R-Pantothenate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ <p>KEGG: C00864</p>
+ <p>PUBCHEM: 4121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_p" name="Ferrioxamine-E" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H48N6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 167864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_p" name="H" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>CHEBI: 15378</p>
+ <p>KEGG: C00080</p>
+ <p>PUBCHEM: 3380</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppt_e" name="Phosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO3P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06701</p>
+ <p>PUBCHEM: 8926</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_p" name="1-5-Diaminopentane" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>CHEBI: 18127</p>
+ <p>KEGG: C01672</p>
+ <p>PUBCHEM: 4816</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lcts_e" name="Lactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 36219</p>
+ <p>KEGG: C00243</p>
+ <p>PUBCHEM: 3542</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_e" name="H" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>CHEBI: 15378</p>
+ <p>KEGG: C00080</p>
+ <p>PUBCHEM: 3380</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_c" name="H" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>CHEBI: 15378</p>
+ <p>KEGG: C00080</p>
+ <p>PUBCHEM: 3380</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_c" name="1-5-Diaminopentane" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>CHEBI: 18127</p>
+ <p>KEGG: C01672</p>
+ <p>PUBCHEM: 4816</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2amsa_c" name="2-Aminomalonate-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H5NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5NO3</p>
+ <p>CHEBI: 37012</p>
+ <p>KEGG: C11822</p>
+ <p>PUBCHEM: 13986</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_e" name="Salmochelin-S4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H47N3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lcts_p" name="Lactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 36219</p>
+ <p>KEGG: C00243</p>
+ <p>PUBCHEM: 3542</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppt_p" name="Phosphonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO3P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06701</p>
+ <p>PUBCHEM: 8926</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_e" name="1-5-Diaminopentane" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>CHEBI: 18127</p>
+ <p>KEGG: C01672</p>
+ <p>PUBCHEM: 4816</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dcit_e" name="Fe-III-dicitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H10FeO14">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H10FeO14</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06229</p>
+ <p>PUBCHEM: 8472</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malcoa_c" name="Malonyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H33N7O19P3S</p>
+ <p>CHEBI: 15531</p>
+ <p>KEGG: C00083</p>
+ <p>PUBCHEM: 3383</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fldrd_c" name="flavodoxin-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02745</p>
+ <p>PUBCHEM: 5705</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ins_c" name="2ins_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 17811</p>
+ <p>KEGG: C00691</p>
+ <p>PUBCHEM: 3959</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_p" name="Oxidized-glutathione" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>CHEBI: 17858</p>
+ <p>KEGG: C00127</p>
+ <p>PUBCHEM: 3427</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4d6dm_c" name="dTDP-4-dehydro-6-deoxy-L-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H22N2O15P2</p>
+ <p>CHEBI: 15744</p>
+ <p>KEGG: C00688</p>
+ <p>PUBCHEM: 3957</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adp_c" name="ADP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10P2</p>
+ <p>CHEBI: 16761</p>
+ <p>KEGG: C00008</p>
+ <p>PUBCHEM: 3310</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_e" name="Oxidized-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>CHEBI: 17858</p>
+ <p>KEGG: C00127</p>
+ <p>PUBCHEM: 3427</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ugmd_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H51N7O26P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H51N7O26P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04877</p>
+ <p>PUBCHEM: 7429</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_e" name="Zinc" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>CHEBI: 29105</p>
+ <p>KEGG: C00038</p>
+ <p>PUBCHEM: 3340</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_c" name="D-Malate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHEBI: 30796</p>
+ <p>KEGG: C00497</p>
+ <p>PUBCHEM: 3780</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_e" name="D-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHEBI: 30796</p>
+ <p>KEGG: C00497</p>
+ <p>PUBCHEM: 3780</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_e" name="udcpo5_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe141_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H38NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_e" name="Protoheme" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>CHEBI: 17627</p>
+ <p>KEGG: C00032</p>
+ <p>PUBCHEM: 3334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdeACP_c" name="cis-tetradec-7-enoyl-acyl-carrier-protein-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp4Oag_p" name="Undecaprenyl-diphosphate-O-antigene-4x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C151H250O75P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H250O75P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_c" name="Protoheme" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>CHEBI: 17627</p>
+ <p>KEGG: C00032</p>
+ <p>PUBCHEM: 3334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_p" name="D-Malate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHEBI: 30796</p>
+ <p>KEGG: C00497</p>
+ <p>PUBCHEM: 3780</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe120_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H36NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ <p>PUBCHEM: 7069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe141_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H38NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3psme_c" name="5-O-1-Carboxyvinyl-3-phosphoshikimate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H9O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H9O10P</p>
+ <p>CHEBI: 16257</p>
+ <p>KEGG: C01269</p>
+ <p>PUBCHEM: 4488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl5b_c" name="Cobalt-precorrin-5b" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C43H43CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H43CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16243</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_c" name="Fumarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>CHEBI: 18012</p>
+ <p>KEGG: C00122</p>
+ <p>PUBCHEM: 3422</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adphep__DD_c" name="ADP-D-glycero-D-manno-heptose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N5O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N5O16P2</p>
+ <p>CHEBI: 16693</p>
+ <p>KEGG: C06397</p>
+ <p>PUBCHEM: 8633</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_e" name="Fumarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>CHEBI: 18012</p>
+ <p>KEGG: C00122</p>
+ <p>PUBCHEM: 3422</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5caiz_c" name="5-phosphoribosyl-5-carboxyaminoimidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N3O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O9P</p>
+ <p>CHEBI: 28413</p>
+ <p>KEGG: C04751</p>
+ <p>PUBCHEM: 7321</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_p" name="alpha-D-Ribose-5-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 17797</p>
+ <p>KEGG: C00117</p>
+ <p>PUBCHEM: 3417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cgmp_e" name="2-3-Cyclic-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06194</p>
+ <p>PUBCHEM: 8444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_p" name="Fumarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>CHEBI: 18012</p>
+ <p>KEGG: C00122</p>
+ <p>PUBCHEM: 3422</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmn_c" name="Undecaprenyl-diphosphate-galactose-rhamnose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C67H110O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C67H110O16P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cgmp_p" name="2-3-Cyclic-GMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06194</p>
+ <p>PUBCHEM: 8444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_c" name="alpha-D-Ribose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 17797</p>
+ <p>KEGG: C00117</p>
+ <p>PUBCHEM: 3417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_e" name="alpha-D-Ribose-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 17797</p>
+ <p>KEGG: C00117</p>
+ <p>PUBCHEM: 3417</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnalys_c" name="tRNA-Lys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29185</p>
+ <p>KEGG: C01646</p>
+ <p>PUBCHEM: 4795</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp160_p" name="Phosphatidylglycerophosphate-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H73O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_p" name="Enterochelin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H27N3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>CHEBI: 28855</p>
+ <p>KEGG: C05821</p>
+ <p>PUBCHEM: 8116</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp160_c" name="Phosphatidylglycerophosphate-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H73O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tet_p" name="Tetrathionate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O6S4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O6S4</p>
+ <p>CHEBI: 15226 16853</p>
+ <p>KEGG: C02084</p>
+ <p>PUBCHEM: 5169</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apoACP_c" name="apoprotein-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="RHO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: RHO</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03688</p>
+ <p>PUBCHEM: 6463</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmpp_c" name="Dimethylallyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P2</p>
+ <p>CHEBI: 16057</p>
+ <p>KEGG: C00235</p>
+ <p>PUBCHEM: 3534</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_e" name="Enterochelin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H27N3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>CHEBI: 28855</p>
+ <p>KEGG: C05821</p>
+ <p>PUBCHEM: 8116</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtp_c" name="XTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O15P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O15P3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00700</p>
+ <p>PUBCHEM: 3968</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_c" name="Adenine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>CHEBI: 16708</p>
+ <p>KEGG: C00147</p>
+ <p>PUBCHEM: 3447</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_e" name="Adenine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>CHEBI: 16708</p>
+ <p>KEGG: C00147</p>
+ <p>PUBCHEM: 3447</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_c" name="Salmochelin-S4" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H47N3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt_p" name="Galactitol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHEBI: 16813</p>
+ <p>KEGG: C01697</p>
+ <p>PUBCHEM: 4837</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpg160_c" name="cyclopropane-phosphatidylglycerol-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C40H74O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H74O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_p" name="Adenine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>CHEBI: 16708</p>
+ <p>KEGG: C00147</p>
+ <p>PUBCHEM: 3447</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt_e" name="Galactitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHEBI: 16813</p>
+ <p>KEGG: C01697</p>
+ <p>PUBCHEM: 4837</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_odecoa_c" name="Octadecenoyl-CoA-n-C181CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O17P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16218</p>
+ <p>PUBCHEM: 47205526</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odecg3p_p" name="2-octadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H42O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_e" name="4hthr_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06056</p>
+ <p>PUBCHEM: 8326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_app_c" name="R-1-Amino-2-propanol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H9NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>CHEBI: 15675</p>
+ <p>KEGG: C03194</p>
+ <p>PUBCHEM: 6071</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_p" name="2-3-diaminopropionate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>CHEBI: 18383</p>
+ <p>KEGG: C06393</p>
+ <p>PUBCHEM: 8629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_c" name="4-Hydroxy-L-threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06056</p>
+ <p>PUBCHEM: 8326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppp9_c" name="Protoporphyrin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H32N4O4</p>
+ <p>CHEBI: 15430</p>
+ <p>KEGG: C02191</p>
+ <p>PUBCHEM: 5261</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_e" name="2-3-diaminopropionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>CHEBI: 18383</p>
+ <p>KEGG: C06393</p>
+ <p>PUBCHEM: 8629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dh3dgal6p_c" name="2-Dehydro-3-deoxy-D-galactonate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O9P</p>
+ <p>CHEBI: 17860</p>
+ <p>KEGG: C01286</p>
+ <p>PUBCHEM: 4505</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_p" name="4hthr_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06056</p>
+ <p>PUBCHEM: 8326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_c" name="2-3-diaminopropionate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>CHEBI: 18383</p>
+ <p>KEGG: C06393</p>
+ <p>PUBCHEM: 8629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urdglyc_c" name="--Ureidoglycolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5N2O4</p>
+ <p>CHEBI: 15412</p>
+ <p>KEGG: C00603</p>
+ <p>PUBCHEM: 3878</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_p" name="octadecanoate-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>CHEBI: 25629</p>
+ <p>KEGG: C01530</p>
+ <p>PUBCHEM: 4692</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_c" name="L-Isoleucine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHEBI: 17191</p>
+ <p>KEGG: C00407</p>
+ <p>PUBCHEM: 3697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chitob_e" name="Chitobiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C16H28N2O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H28N2O11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01674</p>
+ <p>PUBCHEM: 4818</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobn_c" name="Cobyrinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H52CoN4O14">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H52CoN4O14</p>
+ <p>CHEBI: 33907</p>
+ <p>KEGG: C05773</p>
+ <p>PUBCHEM: 8068</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacmam_c" name="UDP-N-acetyl-D-mannosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHEBI: 16287</p>
+ <p>KEGG: C01170</p>
+ <p>PUBCHEM: 4397</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_e" name="L-Isoleucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHEBI: 17191</p>
+ <p>KEGG: C00407</p>
+ <p>PUBCHEM: 3697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_p" name="Reduced-glutathione" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>CHEBI: 16856</p>
+ <p>KEGG: C00051</p>
+ <p>PUBCHEM: 3353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_e" name="octadecanoate-n-C180" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>CHEBI: 25629</p>
+ <p>KEGG: C01530</p>
+ <p>PUBCHEM: 4692</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_c" name="octadecanoate-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>CHEBI: 25629</p>
+ <p>KEGG: C01530</p>
+ <p>PUBCHEM: 4692</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urocan_c" name="Urocanate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5N2O2</p>
+ <p>CHEBI: 30817</p>
+ <p>KEGG: C00785</p>
+ <p>PUBCHEM: 4043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_e" name="Reduced-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>CHEBI: 16856</p>
+ <p>KEGG: C00051</p>
+ <p>PUBCHEM: 3353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_p" name="L-Isoleucine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHEBI: 17191</p>
+ <p>KEGG: C00407</p>
+ <p>PUBCHEM: 3697</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chitob_p" name="chitob_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01674</p>
+ <p>PUBCHEM: 4818</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_p" name="D-Lactate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHEBI: 42111</p>
+ <p>KEGG: C00256</p>
+ <p>PUBCHEM: 3555</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl8x_c" name="Cobalt-precorrin-8x" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H52CoN4O14">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H52CoN4O14</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11545</p>
+ <p>PUBCHEM: 13712</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_c" name="sulfur-dioxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>CHEBI: 18422</p>
+ <p>KEGG: C09306</p>
+ <p>PUBCHEM: 11497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpppg3_c" name="Coproporphyrinogen-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H40N4O8</p>
+ <p>CHEBI: 15439</p>
+ <p>KEGG: C03263</p>
+ <p>PUBCHEM: 6127</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_selnp_c" name="Selenophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="H2O3PSe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O3PSe</p>
+ <p>CHEBI: 16144</p>
+ <p>KEGG: C05172</p>
+ <p>PUBCHEM: 7583</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_e" name="D-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHEBI: 42111</p>
+ <p>KEGG: C00256</p>
+ <p>PUBCHEM: 3555</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_c" name="D-Lactate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHEBI: 42111</p>
+ <p>KEGG: C00256</p>
+ <p>PUBCHEM: 3555</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_p" name="sulfur-dioxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>CHEBI: 18422</p>
+ <p>KEGG: C09306</p>
+ <p>PUBCHEM: 11497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ophb_c" name="3-Octaprenyl-4-hydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C47H69O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C47H69O3</p>
+ <p>CHEBI: 1617 50116</p>
+ <p>KEGG: C05809</p>
+ <p>PUBCHEM: 8104</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhm3p_c" name="1-6-anhydrous-N-Acetylmuramyl-tripeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H39N5O14">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C26H39N5O14</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_e" name="guln__L_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb__L_p" name="L-Ascorbate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H8O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>CHEBI: 29073 38290</p>
+ <p>KEGG: C00072</p>
+ <p>PUBCHEM: 3372</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_c" name="guln__L_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phpyr_c" name="Phenylpyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>CHEBI: 30851</p>
+ <p>KEGG: C00166</p>
+ <p>PUBCHEM: 3466</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mthf_c" name="5-Methyltetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N7O6</p>
+ <p>CHEBI: 15641</p>
+ <p>KEGG: C00440</p>
+ <p>PUBCHEM: 3729</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5cm2hmu_c" name="5-Carboxymethyl-2-hydroxymuconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H5O7</p>
+ <p>CHEBI: 2040</p>
+ <p>KEGG: C04186</p>
+ <p>PUBCHEM: 6862</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_p" name="guln__L_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb__L_e" name="L-Ascorbate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H8O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>CHEBI: 29073 38290</p>
+ <p>KEGG: C00072</p>
+ <p>PUBCHEM: 3372</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_p" name="Melibiose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 28053</p>
+ <p>KEGG: C05402</p>
+ <p>PUBCHEM: 7769</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_p" name="Putrescine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>CHEBI: 17148</p>
+ <p>KEGG: C00134</p>
+ <p>PUBCHEM: 3434</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl1p_c" name="D-Mannitol-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>CHEBI: 16298</p>
+ <p>KEGG: C00644</p>
+ <p>PUBCHEM: 3917</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_c" name="Putrescine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>CHEBI: 17148</p>
+ <p>KEGG: C00134</p>
+ <p>PUBCHEM: 3434</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_c" name="Melibiose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 28053</p>
+ <p>KEGG: C05402</p>
+ <p>PUBCHEM: 7769</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uama_c" name="UDP-N-acetylmuramoyl-L-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C23H33N4O20P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H33N4O20P2</p>
+ <p>CHEBI: 16932</p>
+ <p>KEGG: C01212</p>
+ <p>PUBCHEM: 4434</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_e" name="Putrescine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>CHEBI: 17148</p>
+ <p>KEGG: C00134</p>
+ <p>PUBCHEM: 3434</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_c" name="L-Glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHEBI: 16015</p>
+ <p>KEGG: C00025</p>
+ <p>PUBCHEM: 3327</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_e" name="L-Glutamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHEBI: 16015</p>
+ <p>KEGG: C00025</p>
+ <p>PUBCHEM: 3327</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnatrp_c" name="tRNA-Trp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29181</p>
+ <p>KEGG: C01652</p>
+ <p>PUBCHEM: 4801</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_p" name="L-Glutamate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHEBI: 16015</p>
+ <p>KEGG: C00025</p>
+ <p>PUBCHEM: 3327</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_c" name="L-tartrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHEBI: 15671 30924</p>
+ <p>KEGG: C00898</p>
+ <p>PUBCHEM: 4154</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_e" name="L-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHEBI: 15671 30924</p>
+ <p>KEGG: C00898</p>
+ <p>PUBCHEM: 4154</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_p" name="L-tartrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHEBI: 15671 30924</p>
+ <p>KEGG: C00898</p>
+ <p>PUBCHEM: 4154</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe180_c" name="phosphatidylethanolamine-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H82N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H82N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O10P2</p>
+ <p>CHEBI: 16001</p>
+ <p>KEGG: C00236</p>
+ <p>PUBCHEM: 3535</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu1sa_c" name="L-Glutamate-1-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO3</p>
+ <p>CHEBI: 15757</p>
+ <p>KEGG: C03741</p>
+ <p>PUBCHEM: 6504</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thmmp_c" name="Thiamin-monophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16N4O4PS</p>
+ <p>CHEBI: 9533</p>
+ <p>KEGG: C01081</p>
+ <p>PUBCHEM: 4319</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ag_e" name="silver" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Ag">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ag</p>
+ <p>CHEBI: 9141</p>
+ <p>KEGG: C06710</p>
+ <p>PUBCHEM: 8935</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag6p__D_c" name="D-Tagatose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 4251</p>
+ <p>KEGG: C01097</p>
+ <p>PUBCHEM: 4332</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp19Oag_p" name="Undecaprenyl-diphosphate-O-antigene-19x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C511H850O330P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C511H850O330P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdp_c" name="CDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O11P2</p>
+ <p>CHEBI: 17239</p>
+ <p>KEGG: C00112</p>
+ <p>PUBCHEM: 3412</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mso3_e" name="methanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH3O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>CHEBI: 25224</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 49991312</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg140_p" name="Phosphatidylglycerol-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H66O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H66O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_e" name="Glycerophosphoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3081457</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_c" name="Glycerophosphoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3081457</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_p" name="L-Arginine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>CHEBI: 16467</p>
+ <p>KEGG: C00062</p>
+ <p>PUBCHEM: 3362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_p" name="Thiosulfate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>CHEBI: 16094</p>
+ <p>KEGG: C00320</p>
+ <p>PUBCHEM: 3614</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg140_c" name="Phosphatidylglycerol-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H66O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H66O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_e" name="L-Arginine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>CHEBI: 16467</p>
+ <p>KEGG: C00062</p>
+ <p>PUBCHEM: 3362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_p" name="Phosphoenolpyruvate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>CHEBI: 18021 44897</p>
+ <p>KEGG: C00074</p>
+ <p>PUBCHEM: 3374</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_c" name="L-Arginine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>CHEBI: 16467</p>
+ <p>KEGG: C00062</p>
+ <p>PUBCHEM: 3362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trdrd_c" name="Reduced-thioredoxin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHEBI: 15967</p>
+ <p>KEGG: C00342</p>
+ <p>PUBCHEM: 3635</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_p" name="Glycerophosphoserine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3081457</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_e" name="Thiosulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>CHEBI: 16094</p>
+ <p>KEGG: C00320</p>
+ <p>PUBCHEM: 3614</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_c" name="Thiosulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>CHEBI: 16094</p>
+ <p>KEGG: C00320</p>
+ <p>PUBCHEM: 3614</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dudp_c" name="dUDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O11P2</p>
+ <p>CHEBI: 28850</p>
+ <p>KEGG: C01346</p>
+ <p>PUBCHEM: 4551</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_msa_c" name="msa_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 17960</p>
+ <p>KEGG: C00222</p>
+ <p>PUBCHEM: 3522</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_e" name="D-Glucarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHEBI: 16002</p>
+ <p>KEGG: C00818</p>
+ <p>PUBCHEM: 4076</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_c" name="Pyridoxine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H11NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>CHEBI: 16709</p>
+ <p>KEGG: C00314</p>
+ <p>PUBCHEM: 3608</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr2_ST_p" name="12dgr2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_e" name="Citrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: C00158</p>
+ <p>PUBCHEM: 3458</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdodecg_c" name="CDP-1-2-dioctadecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C48H87N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H87N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ <p>PUBCHEM: 3567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_c" name="Citrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: C00158</p>
+ <p>PUBCHEM: 3458</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_p" name="D-Glucarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHEBI: 16002</p>
+ <p>KEGG: C00818</p>
+ <p>PUBCHEM: 4076</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_p" name="Citrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: C00158</p>
+ <p>PUBCHEM: 3458</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fdp_c" name="D-Fructose-1-6-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O12P2</p>
+ <p>CHEBI: 16905</p>
+ <p>KEGG: C00354</p>
+ <p>PUBCHEM: 3647</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_isetac_e" name="Isethionic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05123</p>
+ <p>PUBCHEM: 7545</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg181_p" name="Phosphatidylglycerol-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H78O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H78O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aacoa_c" name="Acetoacetyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H36N7O18P3S</p>
+ <p>CHEBI: 15345</p>
+ <p>KEGG: C00332</p>
+ <p>PUBCHEM: 3626</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_isetac_p" name="Isethionic-acid" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05123</p>
+ <p>PUBCHEM: 7545</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg181_c" name="Phosphatidylglycerol-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H78O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H78O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c11vaceACP_c" name="trans-3-cis-11-vacceoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H51N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odec11eg3p_p" name="1-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ampm_c" name="4-Amino-2-methyl-5-phosphomethylpyrimidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8N3O4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3O4P</p>
+ <p>CHEBI: 18032</p>
+ <p>KEGG: C04556</p>
+ <p>PUBCHEM: 7161</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odec11eg3p_c" name="1-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpe180_c" name="cyclopropane-phosphatidylethanolamine-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C43H82N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H82N1O8P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4adcho_c" name="4-amino-4-deoxychorismate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO5</p>
+ <p>CHEBI: 18198 35181</p>
+ <p>KEGG: C11355</p>
+ <p>PUBCHEM: 13530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpalmACP_c" name="R-3-hydroxypalmitoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04633</p>
+ <p>PUBCHEM: 7222</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_p" name="Hexadecenoate-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ <p>PUBCHEM: 3548</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp180_c" name="Phosphatidylglycerophosphate-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H81O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_p" name="D-Galacturonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00333</p>
+ <p>PUBCHEM: 3627</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_c" name="Hexadecenoate-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ <p>PUBCHEM: 3548</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pphn_c" name="Prephenate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>CHEBI: 16666</p>
+ <p>KEGG: C00254</p>
+ <p>PUBCHEM: 3553</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_e" name="Hexadecenoate-n-C161" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ <p>PUBCHEM: 3548</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_e" name="D-Galacturonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00333</p>
+ <p>PUBCHEM: 3627</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_c" name="D-Galacturonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00333</p>
+ <p>PUBCHEM: 3627</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp180_p" name="Phosphatidylglycerophosphate-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H81O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_c" name="cis-Aconitate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>CHEBI: 32805</p>
+ <p>KEGG: C00417</p>
+ <p>PUBCHEM: 3707</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_c" name="L-Lyxose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 28480</p>
+ <p>KEGG: C01508</p>
+ <p>PUBCHEM: 4676</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr181_c" name="1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H72O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H72O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_p" name="cis-Aconitate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>CHEBI: 32805</p>
+ <p>KEGG: C00417</p>
+ <p>PUBCHEM: 3707</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rml1p_c" name="L-Rhamnulose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O8P</p>
+ <p>CHEBI: 17892</p>
+ <p>KEGG: C01131</p>
+ <p>PUBCHEM: 4362</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_p" name="L-Lyxose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 28480</p>
+ <p>KEGG: C01508</p>
+ <p>PUBCHEM: 4676</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr181_p" name="1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H72O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H72O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psclys_e" name="psicoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__T_c" name="trans-Aconitate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>CHEBI: 32806</p>
+ <p>KEGG: C02341</p>
+ <p>PUBCHEM: 5390</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urate_c" name="Urate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O3</p>
+ <p>CHEBI: 17775</p>
+ <p>KEGG: C00366</p>
+ <p>PUBCHEM: 3657</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psclys_p" name="psicoselysine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpofuc_c" name="GDP-4-oxo-L-fucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N5O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 16760491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_p" name="sn-Glycero-3-phospho-1-inositol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>CHEBI: 18321</p>
+ <p>KEGG: C01225</p>
+ <p>PUBCHEM: 4447</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_c" name="sn-Glycero-3-phospho-1-inositol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>CHEBI: 18321</p>
+ <p>KEGG: C01225</p>
+ <p>PUBCHEM: 4447</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_e" name="sn-Glycero-3-phospho-1-inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>CHEBI: 18321</p>
+ <p>KEGG: C01225</p>
+ <p>PUBCHEM: 4447</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp18Oag_p" name="Undecaprenyl-diphosphate-O-antigene-18x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C487H810O313P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C487H810O313P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_OA_ST_p" name="OA_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_slcys_c" name="slcys_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05824</p>
+ <p>PUBCHEM: 8119</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg141_c" name="acyl-phosphatidylglycerol-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C48H86O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H86O11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_e" name="Ethanol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>CHEBI: 16236</p>
+ <p>KEGG: C00469</p>
+ <p>PUBCHEM: 3752</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_c" name="Ethanol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>CHEBI: 16236</p>
+ <p>KEGG: C00469</p>
+ <p>PUBCHEM: 3752</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_p" name="pydx_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 17310</p>
+ <p>KEGG: C00250</p>
+ <p>PUBCHEM: 3549</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_e" name="Pyridoxal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>CHEBI: 17310</p>
+ <p>KEGG: C00250</p>
+ <p>PUBCHEM: 3549</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_c" name="Pyridoxal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>CHEBI: 17310</p>
+ <p>KEGG: C00250</p>
+ <p>PUBCHEM: 3549</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_e" name="D-Glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 4178 47952</p>
+ <p>KEGG: C00191</p>
+ <p>PUBCHEM: 3491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_c" name="D-Glucuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 4178 47952</p>
+ <p>KEGG: C00191</p>
+ <p>PUBCHEM: 3491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hisp_c" name="L-Histidinol-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11N3O4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11N3O4P</p>
+ <p>CHEBI: 16996</p>
+ <p>KEGG: C01100</p>
+ <p>PUBCHEM: 4334</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acg5p_c" name="N-Acetyl-L-glutamyl-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H9NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9NO8P</p>
+ <p>CHEBI: 16878</p>
+ <p>KEGG: C04133</p>
+ <p>PUBCHEM: 6819</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag1p__D_c" name="D-Tagatose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sectrna_c" name="L-Selenocysteinyl-tRNA-Sec" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSeR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOSeR</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_p" name="D-Glucuronate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 4178 47952</p>
+ <p>KEGG: C00191</p>
+ <p>PUBCHEM: 3491</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amet_c" name="S-Adenosyl-L-methionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H23N6O5S</p>
+ <p>CHEBI: 15414</p>
+ <p>KEGG: C00019</p>
+ <p>PUBCHEM: 3321</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acglc__D_c" name="6-Acetyl-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H14O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14O7</p>
+ <p>CHEBI: 17901</p>
+ <p>KEGG: C02655</p>
+ <p>PUBCHEM: 5628</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mlthf_c" name="5-10-Methylenetetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H21N7O6</p>
+ <p>CHEBI: 1989</p>
+ <p>KEGG: C00143</p>
+ <p>PUBCHEM: 3443</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_u23ga_c" name="UDP-2-3-bis-3-hydroxytetradecanoyl-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C43H75N3O20P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C43H75N3O20P2</p>
+ <p>CHEBI: 17787</p>
+ <p>KEGG: C04652</p>
+ <p>PUBCHEM: 7239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2oh3d_c" name="2oh3d_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 1254</p>
+ <p>KEGG: C03063</p>
+ <p>PUBCHEM: 5963</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_p" name="R-Glycerate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>CHEBI: 32398</p>
+ <p>KEGG: C00258</p>
+ <p>PUBCHEM: 3557</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_e" name="R-Glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>CHEBI: 32398</p>
+ <p>KEGG: C00258</p>
+ <p>PUBCHEM: 3557</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_c" name="R-Glycerate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>CHEBI: 32398</p>
+ <p>KEGG: C00258</p>
+ <p>PUBCHEM: 3557</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn181_p" name="cardiolipin-tetraoctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C81H148O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C81H148O17P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ <p>PUBCHEM: 8259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3c4mop_c" name="3-Carboxy-4-methyl-2-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O5</p>
+ <p>CHEBI: 1467</p>
+ <p>KEGG: C04236</p>
+ <p>PUBCHEM: 6905</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmhep1p_c" name="D-Glycero-D-manno-heptose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>CHEBI: 28137</p>
+ <p>KEGG: C07838</p>
+ <p>PUBCHEM: 10040</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2shchc_c" name="2-Succinyl-6-hydroxy-2-4-cyclohexadiene-1-carboxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H10O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H10O6</p>
+ <p>CHEBI: 1277</p>
+ <p>KEGG: C05817</p>
+ <p>PUBCHEM: 8112</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_e" name="CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHEBI: 17361</p>
+ <p>KEGG: C00055</p>
+ <p>PUBCHEM: 3357</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_c" name="CMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHEBI: 17361</p>
+ <p>KEGG: C00055</p>
+ <p>PUBCHEM: 3357</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dscl_c" name="dihydrosirohydrochlorin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C42H41N4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H41N4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02463</p>
+ <p>PUBCHEM: 5480</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn161_p" name="cardiolipin-tetrahexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C73H132O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H132O17P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ <p>PUBCHEM: 8259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_p" name="CMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHEBI: 17361</p>
+ <p>KEGG: C00055</p>
+ <p>PUBCHEM: 3357</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo_c" name="3-Deoxy-D-manno-2-octulosonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13O8</p>
+ <p>CHEBI: 32817</p>
+ <p>KEGG: C01187</p>
+ <p>PUBCHEM: 4413</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_itp_c" name="ITP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O14P3</p>
+ <p>CHEBI: 16039</p>
+ <p>KEGG: C00081</p>
+ <p>PUBCHEM: 3381</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg180_c" name="acyl-phosphatidylglycerol-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C60H116O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H116O11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_p" name="D-Fructuronate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 4126</p>
+ <p>KEGG: C00905</p>
+ <p>PUBCHEM: 4160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_e" name="D-Fructuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 4126</p>
+ <p>KEGG: C00905</p>
+ <p>PUBCHEM: 4160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_c" name="D-Fructuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 4126</p>
+ <p>KEGG: C00905</p>
+ <p>PUBCHEM: 4160</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppi_c" name="Inorganic-triphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO10P3</p>
+ <p>CHEBI: 18036</p>
+ <p>KEGG: C03279</p>
+ <p>PUBCHEM: 6138</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man1p_c" name="D-Mannose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03812</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps120_c" name="phosphatidylserine-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H57N1O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57N1O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ <p>PUBCHEM: 5698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaleu_c" name="tRNA-Leu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29169</p>
+ <p>KEGG: C01645</p>
+ <p>PUBCHEM: 4794</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_e" name="Ferrioxamine-B" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 123851</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mettrna_c" name="L-Methionyl-tRNA-Met" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10NOSR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NOSR</p>
+ <p>CHEBI: 16635</p>
+ <p>KEGG: C02430</p>
+ <p>PUBCHEM: 5457</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_c" name="Ferrioxamine-B" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 123851</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_camp_c" name="cAMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>CHEBI: 17489</p>
+ <p>KEGG: C00575</p>
+ <p>PUBCHEM: 3854</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_p" name="Ferrioxamine-B" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 123851</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tton_e" name="tton_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 15987</p>
+ <p>KEGG: C01861</p>
+ <p>PUBCHEM: 4976</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_p" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H2N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pdx5p_c" name="Pyridoxine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H10NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H10NO6P</p>
+ <p>CHEBI: 28803</p>
+ <p>KEGG: C00627</p>
+ <p>PUBCHEM: 3900</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_e" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H2N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_c" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H2N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhb_c" name="2-3-Dihydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O4</p>
+ <p>CHEBI: 18026</p>
+ <p>KEGG: C00196</p>
+ <p>PUBCHEM: 3496</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgal_c" name="Undecaprenyl-diphosphate-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C61H100O12P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C61H100O12P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdec9eg3p_p" name="1-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ump_p" name="3-UMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHEBI: 28895</p>
+ <p>KEGG: C01368</p>
+ <p>PUBCHEM: 4567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_p" name="cold-adapted-KDO-2-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdec9eg3p_c" name="1-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_e" name="cold-adapted-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ump_e" name="3-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>CHEBI: 28895</p>
+ <p>KEGG: C01368</p>
+ <p>PUBCHEM: 4567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fldox_c" name="flavodoxin-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02869</p>
+ <p>PUBCHEM: 5805</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_c" name="cold-adapted-KDO-2-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_c" name="octadecenoate-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>CHEBI: 16196</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3978</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_e" name="octadecenoate-n-C181" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>CHEBI: 16196</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3978</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_e" name="Melibiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 28053</p>
+ <p>KEGG: C05402</p>
+ <p>PUBCHEM: 7769</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_p" name="octadecenoate-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>CHEBI: 16196</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3978</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fmn_c" name="FMN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H19N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H19N4O9P</p>
+ <p>CHEBI: 17621</p>
+ <p>KEGG: C00061</p>
+ <p>PUBCHEM: 3361</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdp4dh6doglc_c" name="CDP-4-dehydro-6-deoxy-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N3O15P2</p>
+ <p>CHEBI: 17494</p>
+ <p>KEGG: C01219</p>
+ <p>PUBCHEM: 4441</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phom_c" name="O-Phospho-L-homoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>CHEBI: 15961</p>
+ <p>KEGG: C01102</p>
+ <p>PUBCHEM: 4336</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr161_p" name="1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H64O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H64O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_p" name="Fe3" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHEBI: 14819</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octdp_c" name="all-trans-Octaprenyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C40H65O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H65O7P2</p>
+ <p>CHEBI: 16275</p>
+ <p>KEGG: C04146</p>
+ <p>PUBCHEM: 6831</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icolipa_c" name="inner-core-oligosaccharide-lipid-A-E-coli" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C145H251N2O74P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C145H251N2O74P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cynt_p" name="Cyanate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>CHEBI: 28024</p>
+ <p>KEGG: C01417</p>
+ <p>PUBCHEM: 4604</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa2_ST_p" name="pa2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_c" name="Fe3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHEBI: 14819</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr161_c" name="1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H64O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H64O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_e" name="Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHEBI: 14819</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp2Oag_p" name="Undecaprenyl-diphosphate-O-antigene-2x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C103H170O41P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C103H170O41P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cynt_e" name="Cyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>CHEBI: 28024</p>
+ <p>KEGG: C01417</p>
+ <p>PUBCHEM: 4604</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_e" name="meso-2-6-Diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHEBI: 16488 30308</p>
+ <p>KEGG: C00680</p>
+ <p>PUBCHEM: 3949</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_p" name="D-Gluconate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 33198</p>
+ <p>KEGG: C00257</p>
+ <p>PUBCHEM: 3556</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_c" name="meso-2-6-Diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHEBI: 16488 30308</p>
+ <p>KEGG: C00680</p>
+ <p>PUBCHEM: 3949</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_p" name="23dhbzs3_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_c" name="udcpo4_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_e" name="udcpo4_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_c" name="D-Gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 33198</p>
+ <p>KEGG: C00257</p>
+ <p>PUBCHEM: 3556</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_p" name="N-Acetyl-D-glucosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 17411</p>
+ <p>KEGG: C00140</p>
+ <p>PUBCHEM: 3440</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_e" name="D-Gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 33198</p>
+ <p>KEGG: C00257</p>
+ <p>PUBCHEM: 3556</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_p" name="meso-2-6-Diaminoheptanedioate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHEBI: 16488 30308</p>
+ <p>KEGG: C00680</p>
+ <p>PUBCHEM: 3949</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_p" name="udcpo4_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_c" name="23dhbzs3_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_e" name="23dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaala_c" name="tRNA-Ala" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29170</p>
+ <p>KEGG: C01635</p>
+ <p>PUBCHEM: 4784</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crncoa_c" name="L-Carnitinyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O18P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_p" name="Indole" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H7N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>CHEBI: 16881</p>
+ <p>KEGG: C00463</p>
+ <p>PUBCHEM: 3747</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocvac11eACP_c" name="3-oxo-cis-vacc-11-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H51N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apolpp_p" name="apolpp_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oodcoa_c" name="3-Oxooctadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O18P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16216</p>
+ <p>PUBCHEM: 47205524</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_e" name="Indole" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H7N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>CHEBI: 16881</p>
+ <p>KEGG: C00463</p>
+ <p>PUBCHEM: 3747</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23doguln_c" name="2-3-Dioxo-L-gulonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O7</p>
+ <p>CHEBI: 15622</p>
+ <p>KEGG: C04575</p>
+ <p>PUBCHEM: 7176</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_c" name="Indole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H7N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>CHEBI: 16881</p>
+ <p>KEGG: C00463</p>
+ <p>PUBCHEM: 3747</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_c" name="Chloride" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>CHEBI: 17996</p>
+ <p>KEGG: C00115</p>
+ <p>PUBCHEM: 3415</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucglu_c" name="N2-Succinyl-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H10NO7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO7</p>
+ <p>CHEBI: 48957</p>
+ <p>KEGG: C05931</p>
+ <p>PUBCHEM: 8219</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hoctaACP_c" name="R-3-Hydroxyoctadecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H55N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_c" name="L-Histidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>CHEBI: 15971</p>
+ <p>KEGG: C00135</p>
+ <p>PUBCHEM: 3435</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mahmp_c" name="2-Methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8N3O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3O7P2</p>
+ <p>CHEBI: 16629</p>
+ <p>KEGG: C04752</p>
+ <p>PUBCHEM: 7322</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_p" name="IMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>CHEBI: 17202</p>
+ <p>KEGG: C00130</p>
+ <p>PUBCHEM: 3430</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbard_p" name="periplasmic-protein-disulfide-isomerase-I-reduced" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phphhlipa_c" name="phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C131H230N2O63P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C131H230N2O63P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f1p_c" name="D-Fructose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02976</p>
+ <p>PUBCHEM: 5887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhna_c" name="1-4-Dihydroxy-2-naphthoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H7O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H7O4</p>
+ <p>CHEBI: 18094</p>
+ <p>KEGG: C03657</p>
+ <p>PUBCHEM: 6435</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_c" name="IMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>CHEBI: 17202</p>
+ <p>KEGG: C00130</p>
+ <p>PUBCHEM: 3430</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_c" name="L-Lysine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>CHEBI: 18019</p>
+ <p>KEGG: C00047</p>
+ <p>PUBCHEM: 3349</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_e" name="Guanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>CHEBI: 16750</p>
+ <p>KEGG: C00387</p>
+ <p>PUBCHEM: 3677</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_c" name="ferroxamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C07597</p>
+ <p>PUBCHEM: 9799</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe181_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H46NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ <p>PUBCHEM: 7069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_e" name="ferroxamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C07597</p>
+ <p>PUBCHEM: 9799</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_c" name="Guanosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>CHEBI: 16750</p>
+ <p>KEGG: C00387</p>
+ <p>PUBCHEM: 3677</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_u3hga_c" name="UDP-3-O-3-hydroxytetradecanoyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H50N3O18P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H50N3O18P2</p>
+ <p>CHEBI: 27392</p>
+ <p>KEGG: C06022</p>
+ <p>PUBCHEM: 8294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_p" name="Guanosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>CHEBI: 16750</p>
+ <p>KEGG: C00387</p>
+ <p>PUBCHEM: 3677</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c5ddeceACP_c" name="trans-3-cis-5-dodecenoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H39N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H39N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hoctACP_c" name="R-3-Hydroxyoctanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04620</p>
+ <p>PUBCHEM: 7210</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pram_c" name="5-Phospho-beta-D-ribosylamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H11NO7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO7P</p>
+ <p>CHEBI: 37737</p>
+ <p>KEGG: C03090</p>
+ <p>PUBCHEM: 5988</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_e" name="NMN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>CHEBI: 16171</p>
+ <p>KEGG: C00455</p>
+ <p>PUBCHEM: 3741</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_c" name="NMN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>CHEBI: 16171</p>
+ <p>KEGG: C00455</p>
+ <p>PUBCHEM: 3741</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpacet_c" name="3-4-Dihydroxyphenylacetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O4</p>
+ <p>CHEBI: 17612</p>
+ <p>KEGG: C01161</p>
+ <p>PUBCHEM: 4388</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpp_c" name="Undecaprenyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C55H89O4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O4P</p>
+ <p>CHEBI: 16141</p>
+ <p>KEGG: C00348</p>
+ <p>PUBCHEM: 3641</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_p" name="NMN" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>CHEBI: 16171</p>
+ <p>KEGG: C00455</p>
+ <p>PUBCHEM: 3741</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anth_c" name="Anthranilate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>CHEBI: 30754</p>
+ <p>KEGG: C00108</p>
+ <p>PUBCHEM: 3408</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag__D_p" name="D-Tagatose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4249</p>
+ <p>KEGG: C00795</p>
+ <p>PUBCHEM: 4053</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacmamu_c" name="UDP-N-acetyl-D-mannosaminouronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C17H22N3O18P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H22N3O18P2</p>
+ <p>CHEBI: 28581</p>
+ <p>KEGG: C06240</p>
+ <p>PUBCHEM: 8481</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tma_p" name="trimethylamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>CHEBI: 18139</p>
+ <p>KEGG: C00565</p>
+ <p>PUBCHEM: 3844</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyam5p_c" name="Pyridoxamine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12N2O5P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N2O5P</p>
+ <p>CHEBI: 18335</p>
+ <p>KEGG: C00647</p>
+ <p>PUBCHEM: 3919</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_suchms_c" name="O-Succinyl-L-homoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO6</p>
+ <p>CHEBI: 16160</p>
+ <p>KEGG: C01118</p>
+ <p>PUBCHEM: 4349</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prpp_c" name="5-Phospho-alpha-D-ribose-1-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C5H8O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8O14P3</p>
+ <p>CHEBI: 17111</p>
+ <p>KEGG: C00119</p>
+ <p>PUBCHEM: 3419</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag__D_e" name="D-Tagatose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4249</p>
+ <p>KEGG: C00795</p>
+ <p>PUBCHEM: 4053</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tma_e" name="trimethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>CHEBI: 18139</p>
+ <p>KEGG: C00565</p>
+ <p>PUBCHEM: 3844</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adphep__LD_c" name="ADP-L-glycero-D-manno-heptose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N5O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N5O16P2</p>
+ <p>CHEBI: 15915</p>
+ <p>KEGG: C06398</p>
+ <p>PUBCHEM: 8634</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnathr_c" name="tRNA-Thr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29180</p>
+ <p>KEGG: C01651</p>
+ <p>PUBCHEM: 4800</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ig3p_c" name="C--3-Indolyl-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO6P</p>
+ <p>CHEBI: 18299</p>
+ <p>KEGG: C03506</p>
+ <p>PUBCHEM: 6317</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_e" name="Molybdate-MoO4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 36264</p>
+ <p>KEGG: C06232</p>
+ <p>PUBCHEM: 8475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ooctdACP_c" name="3-Oxooctadecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xu5p__L_c" name="L-Xylulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 16593</p>
+ <p>KEGG: C03291</p>
+ <p>PUBCHEM: 6148</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_c" name="Molybdate-MoO4" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 36264</p>
+ <p>KEGG: C06232</p>
+ <p>PUBCHEM: 8475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa180_c" name="1-2-dioctadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H75O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H75O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__D_p" name="D-Cysteine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHEBI: 16375</p>
+ <p>KEGG: C00793</p>
+ <p>PUBCHEM: 4051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2obut_c" name="2-Oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHEBI: 30831</p>
+ <p>KEGG: C00109</p>
+ <p>PUBCHEM: 3409</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_p" name="Hexadecanoate-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ <p>PUBCHEM: 3548</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa180_p" name="1-2-dioctadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H75O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H75O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_p" name="Molybdate-MoO4" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 36264</p>
+ <p>KEGG: C06232</p>
+ <p>PUBCHEM: 8475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_e" name="Hexadecanoate-n-C160" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ <p>PUBCHEM: 3548</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_c" name="Hexadecanoate-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>CHEBI: 15756</p>
+ <p>KEGG: C00249</p>
+ <p>PUBCHEM: 3548</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_c" name="L-methionine-R-sulfoxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 847</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__D_e" name="D-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHEBI: 16375</p>
+ <p>KEGG: C00793</p>
+ <p>PUBCHEM: 4051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4per_c" name="4-Phospho-D-erythronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C4H6O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6O8P</p>
+ <p>CHEBI: 49003</p>
+ <p>KEGG: C03393</p>
+ <p>PUBCHEM: 6224</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa161_p" name="1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H63O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H63O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpLa4n_c" name="uridine-5--diphospho-beta-4-deoxy-4-amino-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H22N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_all__D_p" name="D-Allose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4093</p>
+ <p>KEGG: C01487</p>
+ <p>PUBCHEM: 4657</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_e" name="L-methionine-R-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 847</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmao_p" name="Trimethylamine-N-oxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H9NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>CHEBI: 15724</p>
+ <p>KEGG: C01104</p>
+ <p>PUBCHEM: 4338</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa161_c" name="1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H63O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H63O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nad_c" name="Nicotinamide-adenine-dinucleotide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H26N7O14P2</p>
+ <p>CHEBI: 15846</p>
+ <p>KEGG: C00003</p>
+ <p>PUBCHEM: 3305</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_all__D_e" name="D-Allose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4093</p>
+ <p>KEGG: C01487</p>
+ <p>PUBCHEM: 4657</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmao_e" name="Trimethylamine-N-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H9NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>CHEBI: 15724</p>
+ <p>KEGG: C01104</p>
+ <p>PUBCHEM: 4338</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_e" name="Ferrichrome-minus-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_c" name="Ferrichrome-minus-Fe-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmcoa__S_c" name="S-Methylmalonyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>CHEBI: 15466</p>
+ <p>KEGG: C00683</p>
+ <p>PUBCHEM: 3952</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_p" name="Maltopentaose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H52O26">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>CHEBI: 28057</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 124005??3611</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_au_p" name="Gold-Au" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 29287</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_p" name="Ferrichrome-minus-Fe-III" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_c" name="Maltopentaose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H52O26">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>CHEBI: 28057</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 124005??3611</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_e" name="Maltopentaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H52O26">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>CHEBI: 28057</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 124005??3611</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_p" name="R-Propane-1-2-diol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHEBI: 28972</p>
+ <p>KEGG: C02912</p>
+ <p>PUBCHEM: 5836</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe140_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H40NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ <p>PUBCHEM: 7069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_c" name="D-Glucosamine-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHEBI: 15873</p>
+ <p>KEGG: C00352</p>
+ <p>PUBCHEM: 3645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_e" name="Ferrioxamine-E" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H48N6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 167864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_e" name="D-Glucosamine-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHEBI: 15873</p>
+ <p>KEGG: C00352</p>
+ <p>PUBCHEM: 3645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_c" name="Ferrioxamine-E" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H48N6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 167864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_b2coa_c" name="Crotonoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H36N7O17P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00877</p>
+ <p>PUBCHEM: 4133</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_p" name="D-Glucosamine-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>CHEBI: 15873</p>
+ <p>KEGG: C00352</p>
+ <p>PUBCHEM: 3645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chor_c" name="chorismate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>CHEBI: 17333</p>
+ <p>KEGG: C00251</p>
+ <p>PUBCHEM: 3550</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abz_e" name="4-Aminobenzoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>CHEBI: 30753</p>
+ <p>KEGG: C00568</p>
+ <p>PUBCHEM: 3847</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abz_c" name="4-Aminobenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>CHEBI: 30753</p>
+ <p>KEGG: C00568</p>
+ <p>PUBCHEM: 3847</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocblp_c" name="Adenosylcobalamin-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H99CoN18O20P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H99CoN18O20P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C00194</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_td2coa_c" name="trans-Tetradec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O17P3S</p>
+ <p>CHEBI: 27721</p>
+ <p>KEGG: C05273</p>
+ <p>PUBCHEM: 7660</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbcrd_p" name="protein-disulfide-isomerase-II-reduced" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3omrsACP_c" name="3-Oxotetradecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05759</p>
+ <p>PUBCHEM: 8054</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe140_c" name="phosphatidylethanolamine-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H66N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H66N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_c" name="N-Acetyl-D-mannosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 17122</p>
+ <p>KEGG: C00645</p>
+ <p>PUBCHEM: 3918</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_e" name="N-Acetyl-D-mannosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 17122</p>
+ <p>KEGG: C00645</p>
+ <p>PUBCHEM: 3918</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmcoa__R_c" name="R-Methylmalonyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>CHEBI: 15465</p>
+ <p>KEGG: C01213</p>
+ <p>PUBCHEM: 4435</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe140_p" name="phosphatidylethanolamine-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H66N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H66N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg141_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H38O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_p" name="N-Acetyl-D-mannosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 17122</p>
+ <p>KEGG: C00645</p>
+ <p>PUBCHEM: 3918</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frulys_e" name="fructoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16488</p>
+ <p>PUBCHEM: 47205784</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aspsa_c" name="L-Aspartate-4-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7NO3</p>
+ <p>CHEBI: 13086 18051</p>
+ <p>KEGG: C00441</p>
+ <p>PUBCHEM: 3730</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp17Oag_p" name="Undecaprenyl-diphosphate-O-antigene-17x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C463H770O296P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C463H770O296P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_Sfglutth_c" name="S-Formylglutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N3O7S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16N3O7S</p>
+ <p>CHEBI: 16225</p>
+ <p>KEGG: C01031</p>
+ <p>PUBCHEM: 4274</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdec7eg3p_c" name="1-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1tdec7eg3p_p" name="1-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_p" name="pydxn_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 16709</p>
+ <p>KEGG: C00314</p>
+ <p>PUBCHEM: 3608</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe180_p" name="phosphatidylethanolamine-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H82N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H82N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_e" name="Pyridoxine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H11NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>CHEBI: 16709</p>
+ <p>KEGG: C00314</p>
+ <p>PUBCHEM: 3608</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_p" name="Choline" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>CHEBI: 15354</p>
+ <p>KEGG: C00114</p>
+ <p>PUBCHEM: 3414</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3odecACP_c" name="3-Oxodecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05753</p>
+ <p>PUBCHEM: 8048</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpLa4o_c" name="UDP-4-keto-pyranose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H18N2O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H18N2O16P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_c" name="Sodium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>CHEBI: 29101</p>
+ <p>KEGG: C01330</p>
+ <p>PUBCHEM: 4541</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_e" name="Sodium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>CHEBI: 29101</p>
+ <p>KEGG: C01330</p>
+ <p>PUBCHEM: 4541</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aact_c" name="Aminoacetone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8NO</p>
+ <p>CHEBI: 17906</p>
+ <p>KEGG: C01888</p>
+ <p>PUBCHEM: 5001</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_c" name="Choline" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>CHEBI: 15354</p>
+ <p>KEGG: C00114</p>
+ <p>PUBCHEM: 3414</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_e" name="Choline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>CHEBI: 15354</p>
+ <p>KEGG: C00114</p>
+ <p>PUBCHEM: 3414</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_p" name="Sodium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>CHEBI: 29101</p>
+ <p>KEGG: C01330</p>
+ <p>PUBCHEM: 4541</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ugmda_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H61N9O28P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H61N9O28P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04882</p>
+ <p>PUBCHEM: 7434</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dnad_c" name="Deamino-NAD" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H24N6O15P2</p>
+ <p>CHEBI: 18304</p>
+ <p>KEGG: C00857</p>
+ <p>PUBCHEM: 4114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_c" name="dTMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>CHEBI: 17013</p>
+ <p>KEGG: C00364</p>
+ <p>PUBCHEM: 3655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_e" name="dTMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>CHEBI: 17013</p>
+ <p>KEGG: C00364</p>
+ <p>PUBCHEM: 3655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dd2coa_c" name="trans-Dodec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H52N7O17P3S</p>
+ <p>CHEBI: 15471</p>
+ <p>KEGG: C03221</p>
+ <p>PUBCHEM: 6094</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_e" name="2-Deoxy-D-ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>CHEBI: 28816</p>
+ <p>KEGG: C01801</p>
+ <p>PUBCHEM: 4927</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_c" name="2-Deoxy-D-ribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>CHEBI: 28816</p>
+ <p>KEGG: C01801</p>
+ <p>PUBCHEM: 4927</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_p" name="dTMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>CHEBI: 17013</p>
+ <p>KEGG: C00364</p>
+ <p>PUBCHEM: 3655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dadp_c" name="dADP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O9P2</p>
+ <p>CHEBI: 16174</p>
+ <p>KEGG: C00206</p>
+ <p>PUBCHEM: 3506</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein3px4p_p" name="two-disacharide-linked-murein-units-tripeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C71H107N13O38">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H107N13O38</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_p" name="2-Deoxy-D-ribose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>CHEBI: 28816</p>
+ <p>KEGG: C01801</p>
+ <p>PUBCHEM: 4927</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_p" name="Agmatine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>CHEBI: 17431</p>
+ <p>KEGG: C00179</p>
+ <p>PUBCHEM: 3479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3opalmACP_c" name="3-Oxohexadecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05762</p>
+ <p>PUBCHEM: 8057</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_c" name="Agmatine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>CHEBI: 17431</p>
+ <p>KEGG: C00179</p>
+ <p>PUBCHEM: 3479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_e" name="Agmatine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>CHEBI: 17431</p>
+ <p>KEGG: C00179</p>
+ <p>PUBCHEM: 3479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hlipa_c" name="heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C117H208N2O45P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C117H208N2O45P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_p" name="L-Xylulose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 17399</p>
+ <p>KEGG: C00312</p>
+ <p>PUBCHEM: 3606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa181_p" name="1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H71O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H71O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_c" name="L-Xylulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 17399</p>
+ <p>KEGG: C00312</p>
+ <p>PUBCHEM: 3606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_e" name="L-Xylulose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 17399</p>
+ <p>KEGG: C00312</p>
+ <p>PUBCHEM: 3606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa181_c" name="1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H71O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H71O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_e" name="coprogen" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ipdp_c" name="Isopentenyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P2</p>
+ <p>CHEBI: 16584</p>
+ <p>KEGG: C00129</p>
+ <p>PUBCHEM: 3429</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frulys_p" name="fructoselysine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16488</p>
+ <p>PUBCHEM: 47205784</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrtrna_c" name="L-Tyrosyl-tRNA-Tyr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H10NO2R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO2R</p>
+ <p>CHEBI: 29161</p>
+ <p>KEGG: C02839</p>
+ <p>PUBCHEM: 5781</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_p" name="L-Valine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHEBI: 16414</p>
+ <p>KEGG: C00183</p>
+ <p>PUBCHEM: 3483</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbdox_c" name="fused-thioldisulfide-interchange-protein-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_e4p_c" name="D-Erythrose-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O7P</p>
+ <p>CHEBI: 48153</p>
+ <p>KEGG: C00279</p>
+ <p>PUBCHEM: 3574</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oddecACP_c" name="3-Oxododecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05756</p>
+ <p>PUBCHEM: 8051</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_e" name="L-Valine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHEBI: 16414</p>
+ <p>KEGG: C00183</p>
+ <p>PUBCHEM: 3483</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_e" name="Adenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHEBI: 16335</p>
+ <p>KEGG: C00212</p>
+ <p>PUBCHEM: 3512</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_c" name="L-Valine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHEBI: 16414</p>
+ <p>KEGG: C00183</p>
+ <p>PUBCHEM: 3483</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_c" name="coprogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ditp_c" name="dITP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O13P3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01345</p>
+ <p>PUBCHEM: 4550</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3otdcoa_c" name="3-Oxotetradecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H56N7O18P3S</p>
+ <p>CHEBI: 28726</p>
+ <p>KEGG: C05261</p>
+ <p>PUBCHEM: 7648</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__LL_c" name="LL-2-6-Diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>CHEBI: 16026</p>
+ <p>KEGG: C00666</p>
+ <p>PUBCHEM: 3935</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__L_e" name="L-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15930</p>
+ <p>PUBCHEM: 47205248</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_micit_c" name="methylisocitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O7</p>
+ <p>CHEBI: 15607</p>
+ <p>KEGG: C04593</p>
+ <p>PUBCHEM: 7191</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_accoa_c" name="Acetyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H34N7O17P3S</p>
+ <p>CHEBI: 15351</p>
+ <p>KEGG: C00024</p>
+ <p>PUBCHEM: 3326</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__L_p" name="L-Galactonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15930</p>
+ <p>PUBCHEM: 47205248</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hco3_c" name="Bicarbonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHO3</p>
+ <p>CHEBI: 17544</p>
+ <p>KEGG: C00288</p>
+ <p>PUBCHEM: 3583</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_p" name="Superoxide-anion" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHEBI: 18421</p>
+ <p>KEGG: C00704</p>
+ <p>PUBCHEM: 3971</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctbt_p" name="crotonobetaine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13NO2</p>
+ <p>CHEBI: 1774</p>
+ <p>KEGG: C04114</p>
+ <p>PUBCHEM: 6803</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_d5kgp_c" name="d5kgp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06893</p>
+ <p>PUBCHEM: 9110</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3php_c" name="3-Phosphohydroxypyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O7P</p>
+ <p>CHEBI: 30933</p>
+ <p>KEGG: C03232</p>
+ <p>PUBCHEM: 6103</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_c" name="Superoxide-anion" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHEBI: 18421</p>
+ <p>KEGG: C00704</p>
+ <p>PUBCHEM: 3971</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctbt_c" name="crotonobetaine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13NO2</p>
+ <p>CHEBI: 1774</p>
+ <p>KEGG: C04114</p>
+ <p>PUBCHEM: 6803</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucorn_c" name="N2-Succinyl-L-ornithine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15N2O5</p>
+ <p>CHEBI: 27574</p>
+ <p>KEGG: C03415</p>
+ <p>PUBCHEM: 6244</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdhdecg_c" name="CDP-1-2-dihexadecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C44H79N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H79N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ <p>PUBCHEM: 3567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rml_c" name="L-Rhamnulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 17897</p>
+ <p>KEGG: C00861</p>
+ <p>PUBCHEM: 4118</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg140_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H40O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdecg3p_c" name="2-tetradecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H34O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H34O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdhdec9eg_c" name="CDP-1-2-dihexadec-9-enoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C44H75N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H75N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ <p>PUBCHEM: 3567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg140_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H40O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmgth_c" name="hydroxymethylglutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18N3O7S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18N3O7S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 1082</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_p" name="N-Acetylneuraminate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>CHEBI: 17012</p>
+ <p>KEGG: C00270</p>
+ <p>PUBCHEM: 3568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butso3_e" name="butanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H9O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fadh2_c" name="Flavin-adenine-dinucleotide-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H33N9O15P2</p>
+ <p>CHEBI: 17877</p>
+ <p>KEGG: C01352</p>
+ <p>PUBCHEM: 4556</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_e" name="N-Acetylneuraminate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>CHEBI: 17012</p>
+ <p>KEGG: C00270</p>
+ <p>PUBCHEM: 3568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hpyr_c" name="Hydroxypyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O4</p>
+ <p>CHEBI: 30841</p>
+ <p>KEGG: C00168</p>
+ <p>PUBCHEM: 3468</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butso3_p" name="butanesulfonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H9O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_e" name="Cadmium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>CHEBI: 48775</p>
+ <p>KEGG: C01413</p>
+ <p>PUBCHEM: 4601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fmettrna_c" name="N-Formylmethionyl-tRNA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9NO2SR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9NO2SR</p>
+ <p>CHEBI: 17119</p>
+ <p>KEGG: C03294</p>
+ <p>PUBCHEM: 6151</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_c" name="Cadmium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>CHEBI: 48775</p>
+ <p>KEGG: C01413</p>
+ <p>PUBCHEM: 4601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cob2nda_c" name="Cob-II-yrinate-a-c-diamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H56CoN6O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H56CoN6O12</p>
+ <p>CHEBI: 27937</p>
+ <p>KEGG: C06504</p>
+ <p>PUBCHEM: 8735</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg180_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H48O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_p" name="Cadmium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>CHEBI: 48775</p>
+ <p>KEGG: C01413</p>
+ <p>PUBCHEM: 4601</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_paps_c" name="3-Phosphoadenylyl-sulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O13P2S</p>
+ <p>CHEBI: 17980</p>
+ <p>KEGG: C00053</p>
+ <p>PUBCHEM: 3355</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpg180_c" name="cyclopropane-phosphatidylglycerol-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C44H82O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H82O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg180_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H48O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdec9eg3p_c" name="2-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H36O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H36O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein3p3p_p" name="two-linked-disacharide-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C68H104N12O38">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H104N12O38</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uppg3_c" name="Uroporphyrinogen-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H36N4O16</p>
+ <p>CHEBI: 15437</p>
+ <p>KEGG: C01051</p>
+ <p>PUBCHEM: 4293</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbi_c" name="Adenosyl-cobinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C58H84CoN16O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C58H84CoN16O11</p>
+ <p>CHEBI: 2480</p>
+ <p>KEGG: C06508</p>
+ <p>PUBCHEM: 8739</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdec9eg3p_p" name="2-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H36O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H36O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtspmd_c" name="Glutathionylspermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C17H36N6O5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36N6O5S</p>
+ <p>CHEBI: 16613</p>
+ <p>KEGG: C05730</p>
+ <p>PUBCHEM: 8032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpe160_c" name="cyclopropane-phosphatidylethanolamine-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H74N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H74N1O8P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acetol_c" name="Acetol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>CHEBI: 27957</p>
+ <p>KEGG: C05235</p>
+ <p>PUBCHEM: 7630</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gcald_c" name="Glycolaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O2</p>
+ <p>CHEBI: 17071</p>
+ <p>KEGG: C00266</p>
+ <p>PUBCHEM: 3564</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mso3_p" name="methanesulfonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH3O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>CHEBI: 25224</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 49991312</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaasn_c" name="tRNA-Asn" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H17O10PR2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17O10PR2</p>
+ <p>CHEBI: 29172</p>
+ <p>KEGG: C01637</p>
+ <p>PUBCHEM: 4786</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tton_p" name="tton_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 15987</p>
+ <p>KEGG: C01861</p>
+ <p>PUBCHEM: 4976</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe141_p" name="phosphatidylethanolamine-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H62N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H62N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe161_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H42NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phetrna_c" name="L-Phenylalanyl-tRNA-Phe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H10NOR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NOR</p>
+ <p>CHEBI: 29153</p>
+ <p>KEGG: C03511</p>
+ <p>PUBCHEM: 6321</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe161_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H42NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe141_c" name="phosphatidylethanolamine-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H62N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H62N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcacoa_c" name="Decanoyl-CoA-n-C100CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H50N7O17P3S</p>
+ <p>CHEBI: 28493</p>
+ <p>KEGG: C05274</p>
+ <p>PUBCHEM: 7661</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_p" name="L-Histidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>CHEBI: 15971</p>
+ <p>KEGG: C00135</p>
+ <p>PUBCHEM: 3435</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpddman_c" name="GDP-4-dehydro-6-deoxy-D-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N5O15P2</p>
+ <p>CHEBI: 16955</p>
+ <p>KEGG: C01222</p>
+ <p>PUBCHEM: 4444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mtr_c" name="5-Methylthio-D-ribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O4S</p>
+ <p>CHEBI: 16895</p>
+ <p>KEGG: C03089</p>
+ <p>PUBCHEM: 5987</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hba_c" name="4-Hydroxy-benzyl-alcohol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O2</p>
+ <p>CHEBI: 30746</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 125??3480</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ippm_c" name="2-Isopropylmaleate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O4</p>
+ <p>CHEBI: 17275</p>
+ <p>KEGG: C02631</p>
+ <p>PUBCHEM: 5611</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__D_c" name="D-Xylulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 17140</p>
+ <p>KEGG: C00310</p>
+ <p>PUBCHEM: 3604</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaasp_c" name="tRNA-Asp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29186</p>
+ <p>KEGG: C01638</p>
+ <p>PUBCHEM: 4787</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp6Oag_p" name="Undecaprenyl-diphosphate-O-antigene-6x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C199H330O109P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C199H330O109P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_e" name="H2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>CHEBI: 18276</p>
+ <p>KEGG: C00282</p>
+ <p>PUBCHEM: 3577</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpgr_c" name="udcpgr_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_c" name="H2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>CHEBI: 18276</p>
+ <p>KEGG: C00282</p>
+ <p>PUBCHEM: 3577</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_c" name="D-Glucarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHEBI: 16002</p>
+ <p>KEGG: C00818</p>
+ <p>PUBCHEM: 4076</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrtrna_c" name="L-Threonyl-tRNA-Thr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8NO2R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO2R</p>
+ <p>CHEBI: 29163</p>
+ <p>KEGG: C02992</p>
+ <p>PUBCHEM: 5901</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_e" name="Maltotetraose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C24H42O21">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02052</p>
+ <p>PUBCHEM: 5141</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps160_c" name="phosphatidylserine-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H73N1O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H73N1O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ <p>PUBCHEM: 5698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_p" name="Zinc" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>CHEBI: 29105</p>
+ <p>KEGG: C00038</p>
+ <p>PUBCHEM: 3340</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_c" name="Maltotetraose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C24H42O21">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02052</p>
+ <p>PUBCHEM: 5141</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp11Oag_p" name="Undecaprenyl-diphosphate-O-antigene-11x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C319H530O194P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C319H530O194P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_p" name="H2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>CHEBI: 18276</p>
+ <p>KEGG: C00282</p>
+ <p>PUBCHEM: 3577</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_e" name="Superoxide-anion" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHEBI: 18421</p>
+ <p>KEGG: C00704</p>
+ <p>PUBCHEM: 3971</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_p" name="Maltotetraose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C24H42O21">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02052</p>
+ <p>PUBCHEM: 5141</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_c" name="Zinc" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>CHEBI: 29105</p>
+ <p>KEGG: C00038</p>
+ <p>PUBCHEM: 3340</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_c" name="L-Cysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHEBI: 17561</p>
+ <p>KEGG: C00097</p>
+ <p>PUBCHEM: 3397</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca2und_p" name="enterobacterial-common-antigen-x2-undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C103H162N6O37P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C103H162N6O37P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmhep17bp_c" name="D-Glycero-D-manno-heptose-1-7-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C7H12O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11472</p>
+ <p>PUBCHEM: 13642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_e" name="tungstate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>CHEBI: 46502</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 26697048</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_p" name="L-Threonine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHEBI: 16857</p>
+ <p>KEGG: C00188</p>
+ <p>PUBCHEM: 3488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpppn_e" name="3-3-hydroxy-phenyl-propionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_c" name="tungstate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>CHEBI: 46502</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 26697048</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mthgxl_c" name="Methylglyoxal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O2</p>
+ <p>CHEBI: 17158</p>
+ <p>KEGG: C00546</p>
+ <p>PUBCHEM: 3827</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpgrm_c" name="udcpgrm_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 23061145</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_c" name="L-Threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHEBI: 16857</p>
+ <p>KEGG: C00188</p>
+ <p>PUBCHEM: 3488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_e" name="L-Threonine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHEBI: 16857</p>
+ <p>KEGG: C00188</p>
+ <p>PUBCHEM: 3488</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_p" name="tungstate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>CHEBI: 46502</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 26697048</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpppn_p" name="3-3-hydroxy-phenyl-propionate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_e" name="4-Aminobutanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>CHEBI: 16865</p>
+ <p>KEGG: C00334</p>
+ <p>PUBCHEM: 3628</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_c" name="4-Aminobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>CHEBI: 16865</p>
+ <p>KEGG: C00334</p>
+ <p>PUBCHEM: 3628</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_25dkglcn_c" name="2-5-diketo-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7O7</p>
+ <p>CHEBI: 18281</p>
+ <p>KEGG: C02780</p>
+ <p>PUBCHEM: 5731</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe120_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H36NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_p" name="L-Glutamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>CHEBI: 18050</p>
+ <p>KEGG: C00064</p>
+ <p>PUBCHEM: 3364</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_p" name="4-Aminobutanoate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>CHEBI: 16865</p>
+ <p>KEGG: C00334</p>
+ <p>PUBCHEM: 3628</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p3p_p" name="two-linked-disacharide-pentapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H114N14O40">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H114N14O40</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_e" name="L-Glutamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>CHEBI: 18050</p>
+ <p>KEGG: C00064</p>
+ <p>PUBCHEM: 3364</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imacp_c" name="3-Imidazol-4-yl-2-oxopropyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7N2O5P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7N2O5P</p>
+ <p>CHEBI: 16426</p>
+ <p>KEGG: C01267</p>
+ <p>PUBCHEM: 4486</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_c" name="L-Glutamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>CHEBI: 18050</p>
+ <p>KEGG: C00064</p>
+ <p>PUBCHEM: 3364</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp161_c" name="Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H69O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ddhb_c" name="2-3-Dihydro-2-3-dihydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O4</p>
+ <p>CHEBI: 15941</p>
+ <p>KEGG: C04171</p>
+ <p>PUBCHEM: 6852</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_p" name="UDPglucose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHEBI: 18066</p>
+ <p>KEGG: C00029</p>
+ <p>PUBCHEM: 3331</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcamp_c" name="N6-1-2-Dicarboxyethyl-AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H14N5O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H14N5O11P</p>
+ <p>CHEBI: 15919</p>
+ <p>KEGG: C03794</p>
+ <p>PUBCHEM: 6543</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_e" name="UDPglucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHEBI: 18066</p>
+ <p>KEGG: C00029</p>
+ <p>PUBCHEM: 3331</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_c" name="UDPglucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHEBI: 18066</p>
+ <p>KEGG: C00029</p>
+ <p>PUBCHEM: 3331</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_p" name="CO2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>CHEBI: 16526</p>
+ <p>KEGG: C00011</p>
+ <p>PUBCHEM: 3313</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipidX_c" name="2-3-Bis-3-hydroxytetradecanoyl-beta-D-glucosaminyl-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H64NO12P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H64NO12P</p>
+ <p>CHEBI: 16942</p>
+ <p>KEGG: C04824</p>
+ <p>PUBCHEM: 7385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp16Oag_p" name="Undecaprenyl-diphosphate-O-antigene-16x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C439H730O279P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C439H730O279P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_c" name="CO2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>CHEBI: 16526</p>
+ <p>KEGG: C00011</p>
+ <p>PUBCHEM: 3313</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_e" name="CO2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>CHEBI: 16526</p>
+ <p>KEGG: C00011</p>
+ <p>PUBCHEM: 3313</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mql8_c" name="Menaquinol-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C51H74O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C51H74O2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05819</p>
+ <p>PUBCHEM: 8114</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_p" name="AMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 16027</p>
+ <p>KEGG: C00020</p>
+ <p>PUBCHEM: 3322</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ohcoa_c" name="3-Oxohexanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H40N7O18P3S</p>
+ <p>CHEBI: 27648</p>
+ <p>KEGG: C05269</p>
+ <p>PUBCHEM: 7656</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dhglcn_c" name="2-Dehydro-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 16808</p>
+ <p>KEGG: C00629</p>
+ <p>PUBCHEM: 3902</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glx_c" name="Glyoxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H1O3</p>
+ <p>CHEBI: 16891</p>
+ <p>KEGG: C00048</p>
+ <p>PUBCHEM: 3350</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hh24dd_c" name="2-Hydroxyhepta-2-4-dienedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H6O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6O5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05600</p>
+ <p>PUBCHEM: 7923</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdecg3p_p" name="2-tetradecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H34O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H34O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_c" name="L-Carnitine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHEBI: 16347</p>
+ <p>KEGG: C00318</p>
+ <p>PUBCHEM: 3612</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3amp_e" name="3-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 28931</p>
+ <p>KEGG: C01367</p>
+ <p>PUBCHEM: 4566</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_e" name="L-Carnitine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHEBI: 16347</p>
+ <p>KEGG: C00318</p>
+ <p>PUBCHEM: 3612</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdolipid4_c" name="KDO-lipid-IV-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C76H137N2O30P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C76H137N2O30P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06024</p>
+ <p>PUBCHEM: 8296</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp140_c" name="Phosphatidylglycerophosphate-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H65O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3amp_p" name="3-AMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 28931</p>
+ <p>KEGG: C01367</p>
+ <p>PUBCHEM: 4566</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_p" name="L-Carnitine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHEBI: 16347</p>
+ <p>KEGG: C00318</p>
+ <p>PUBCHEM: 3612</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp140_p" name="Phosphatidylglycerophosphate-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H65O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmbzid_c" name="5-6-Dimethylbenzimidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H10N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2</p>
+ <p>CHEBI: 15890</p>
+ <p>KEGG: C03114</p>
+ <p>PUBCHEM: 6009</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_grxrd_c" name="glutaredoxin-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_e" name="AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 16027</p>
+ <p>KEGG: C00020</p>
+ <p>PUBCHEM: 3322</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_c" name="sn-Glycero-3-phosphocholine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H20NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>CHEBI: 16870</p>
+ <p>KEGG: C00670</p>
+ <p>PUBCHEM: 3939</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prfp_c" name="1-5-Phosphoribosyl-5-5-phosphoribosylamino-methylideneaminoimidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H21N5O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O15P2</p>
+ <p>CHEBI: 18302</p>
+ <p>KEGG: C04896</p>
+ <p>PUBCHEM: 7447</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn__D_p" name="D-Carnitine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHEBI: 3424</p>
+ <p>KEGG: C00487</p>
+ <p>PUBCHEM: 3770</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc2p_e" name="Glycerol-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHEBI: 17270</p>
+ <p>KEGG: C02979</p>
+ <p>PUBCHEM: 5889</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oxur_c" name="Oxalureate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3N2O4</p>
+ <p>CHEBI: 16582</p>
+ <p>KEGG: C00802</p>
+ <p>PUBCHEM: 4060</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn__D_c" name="D-Carnitine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>CHEBI: 3424</p>
+ <p>KEGG: C00487</p>
+ <p>PUBCHEM: 3770</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2cpr5p_c" name="1-2-Carboxyphenylamino-1-deoxy-D-ribulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H13NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H13NO9P</p>
+ <p>CHEBI: 29112</p>
+ <p>KEGG: C01302</p>
+ <p>PUBCHEM: 4520</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_p" name="Succinate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>CHEBI: 15741</p>
+ <p>KEGG: C00042</p>
+ <p>PUBCHEM: 3344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp141_p" name="Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H61O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_diglyceride_prolpp_c" name="diglyceride_prolpp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_e" name="Thymine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>CHEBI: 17821</p>
+ <p>KEGG: C00178</p>
+ <p>PUBCHEM: 3478</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_c" name="dUMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>CHEBI: 17622</p>
+ <p>KEGG: C00365</p>
+ <p>PUBCHEM: 3656</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp141_c" name="Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H61O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H61O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_c" name="Succinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>CHEBI: 15741</p>
+ <p>KEGG: C00042</p>
+ <p>PUBCHEM: 3344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_e" name="Succinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>CHEBI: 15741</p>
+ <p>KEGG: C00042</p>
+ <p>PUBCHEM: 3344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnagln_c" name="tRNA-Gln" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29168</p>
+ <p>KEGG: C01640</p>
+ <p>PUBCHEM: 4789</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ahcys_c" name="S-Adenosyl-L-homocysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C14H20N6O5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H20N6O5S</p>
+ <p>CHEBI: 16680</p>
+ <p>KEGG: C00021</p>
+ <p>PUBCHEM: 3323</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_p" name="dUMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>CHEBI: 17622</p>
+ <p>KEGG: C00365</p>
+ <p>PUBCHEM: 3656</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oocoa_c" name="3-Oxooctanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N7O18P3S</p>
+ <p>CHEBI: 28264</p>
+ <p>KEGG: C05267</p>
+ <p>PUBCHEM: 7654</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_c" name="N-Acetylneuraminate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>CHEBI: 17012</p>
+ <p>KEGG: C00270</p>
+ <p>PUBCHEM: 3568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_e" name="D-Mannose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4208</p>
+ <p>KEGG: C00159</p>
+ <p>PUBCHEM: 3459</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_histrna_c" name="L-Histidyl-tRNA-His" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H8N3OR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8N3OR</p>
+ <p>CHEBI: 29155</p>
+ <p>KEGG: C02988</p>
+ <p>PUBCHEM: 5897</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_c" name="D-Mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4208</p>
+ <p>KEGG: C00159</p>
+ <p>PUBCHEM: 3459</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_p" name="D-Mannose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4208</p>
+ <p>KEGG: C00159</p>
+ <p>PUBCHEM: 3459</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rbl__L_c" name="L-Ribulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 16880</p>
+ <p>KEGG: C00508</p>
+ <p>PUBCHEM: 3791</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps180_c" name="phosphatidylserine-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H81N1O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H81N1O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ <p>PUBCHEM: 5698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_od2coa_c" name="trans-Octadec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H64N7O17P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16218</p>
+ <p>PUBCHEM: 47205526</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nadph_c" name="Nicotinamide-adenine-dinucleotide-phosphate--reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H26N7O17P3</p>
+ <p>CHEBI: 16474</p>
+ <p>KEGG: C00005</p>
+ <p>PUBCHEM: 3307</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hhdcoa_c" name="S-3-Hydroxyhexadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H62N7O18P3S</p>
+ <p>CHEBI: 27402</p>
+ <p>KEGG: C05258</p>
+ <p>PUBCHEM: 7645</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_p" name="potassium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>CHEBI: 29103</p>
+ <p>KEGG: C00238</p>
+ <p>PUBCHEM: 3537</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_p" name="4-Hydroxyphenylacetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>CHEBI: 15621</p>
+ <p>KEGG: C03765</p>
+ <p>PUBCHEM: 6521</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxcoa_c" name="Hexanoyl-CoA-n-C60CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N7O17P3S</p>
+ <p>CHEBI: 27540</p>
+ <p>KEGG: C05270</p>
+ <p>PUBCHEM: 7657</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_c" name="potassium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>CHEBI: 29103</p>
+ <p>KEGG: C00238</p>
+ <p>PUBCHEM: 3537</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_e" name="potassium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>CHEBI: 29103</p>
+ <p>KEGG: C00238</p>
+ <p>PUBCHEM: 3537</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prolpp_c" name="prolpp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_e" name="4-Hydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>CHEBI: 15621</p>
+ <p>KEGG: C03765</p>
+ <p>PUBCHEM: 6521</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__5_c" name="5-Deoxyadenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHEBI: 17319</p>
+ <p>KEGG: C05198</p>
+ <p>PUBCHEM: 7603</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipaOA_e" name="colipaOA_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_c" name="Nitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>CHEBI: 48107</p>
+ <p>KEGG: C00244</p>
+ <p>PUBCHEM: 3543</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aicar_c" name="5-Amino-1-5-Phospho-D-ribosyl-imidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N4O8P</p>
+ <p>CHEBI: 18406</p>
+ <p>KEGG: C04677</p>
+ <p>PUBCHEM: 7258</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dms_e" name="Dimethyl-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>CHEBI: 17437</p>
+ <p>KEGG: C00580</p>
+ <p>PUBCHEM: 3859</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_p" name="Nitrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>CHEBI: 48107</p>
+ <p>KEGG: C00244</p>
+ <p>PUBCHEM: 3543</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dms_p" name="Dimethyl-sulfide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>CHEBI: 17437</p>
+ <p>KEGG: C00580</p>
+ <p>PUBCHEM: 3859</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaval_c" name="tRNA-Val" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29183</p>
+ <p>KEGG: C01653</p>
+ <p>PUBCHEM: 4802</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3htdcoa_c" name="S-3-Hydroxytetradecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H58N7O18P3S</p>
+ <p>CHEBI: 27466</p>
+ <p>KEGG: C05260</p>
+ <p>PUBCHEM: 7647</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2h5cmmusa_c" name="2-Hydroxy-5-carboxymethylmuconate-Semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H6O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H6O6</p>
+ <p>CHEBI: 17142</p>
+ <p>KEGG: C04642</p>
+ <p>PUBCHEM: 7231</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_e" name="3-Phospho-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHEBI: 17794</p>
+ <p>KEGG: C00197</p>
+ <p>PUBCHEM: 3497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHEBI: 17794</p>
+ <p>KEGG: C00197</p>
+ <p>PUBCHEM: 3497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cump_e" name="2-3-Cyclic-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02355</p>
+ <p>PUBCHEM: 5402</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_p" name="3-Phospho-D-glycerate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHEBI: 17794</p>
+ <p>KEGG: C00197</p>
+ <p>PUBCHEM: 3497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ap5a_c" name="P1-P5-Bis-5-adenosyl-pentaphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C20H24N10O22P5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N10O22P5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04058</p>
+ <p>PUBCHEM: 6757</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cump_p" name="2-3-Cyclic-UMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02355</p>
+ <p>PUBCHEM: 5402</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dttp_c" name="dTTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O14P3</p>
+ <p>CHEBI: 18077</p>
+ <p>KEGG: C00459</p>
+ <p>PUBCHEM: 3743</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hhlipa_c" name="heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C124H220N2O51P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C124H220N2O51P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alac__S_c" name="S-2-Acetolactate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O4</p>
+ <p>CHEBI: 18409</p>
+ <p>KEGG: C06010</p>
+ <p>PUBCHEM: 8282</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sertrna_c" name="L-Seryl-tRNA-Ser" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NO2R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO2R</p>
+ <p>CHEBI: 29162</p>
+ <p>KEGG: C02553</p>
+ <p>PUBCHEM: 5554</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_argsuc_c" name="N-omega--L-Arginino-succinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N4O6</p>
+ <p>CHEBI: 15682</p>
+ <p>KEGG: C03406</p>
+ <p>PUBCHEM: 6235</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhpt_c" name="Dihydropteroate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H13N6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H13N6O3</p>
+ <p>CHEBI: 4581</p>
+ <p>KEGG: C00921</p>
+ <p>PUBCHEM: 4175</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg2_ST_p" name="pg2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unaga_c" name="Undecaprenyl-diphospho-N-acetyl-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C63H103NO12P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C63H103NO12P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01289</p>
+ <p>PUBCHEM: 4508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaile_c" name="tRNA-Ile" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29174</p>
+ <p>KEGG: C01644</p>
+ <p>PUBCHEM: 4793</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but_e" name="Butyrate-n-C40" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>CHEBI: 30772</p>
+ <p>KEGG: C00246</p>
+ <p>PUBCHEM: 3545</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpLa4fn_c" name="uridine-5--diphospho-beta-4-deoxy-4-formamido-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N3O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N3O16P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 17756768</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_p" name="Uridine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>CHEBI: 16704</p>
+ <p>KEGG: C00299</p>
+ <p>PUBCHEM: 3593</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__D_c" name="D-Glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>CHEBI: 15966</p>
+ <p>KEGG: C00217</p>
+ <p>PUBCHEM: 3517</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl4_c" name="Cobalt-precorrin-4" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C44H44CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H44CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11540</p>
+ <p>PUBCHEM: 13707</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_c" name="Uridine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>CHEBI: 16704</p>
+ <p>KEGG: C00299</p>
+ <p>PUBCHEM: 3593</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but_p" name="Butyrate-n-C40" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>CHEBI: 30772</p>
+ <p>KEGG: C00246</p>
+ <p>PUBCHEM: 3545</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_c" name="L-Lactate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHEBI: 422</p>
+ <p>KEGG: C00186</p>
+ <p>PUBCHEM: 3486</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_e" name="Uridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>CHEBI: 16704</p>
+ <p>KEGG: C00299</p>
+ <p>PUBCHEM: 3593</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl2_c" name="Cobalt-precorrin-2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C42H39CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H39CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11538</p>
+ <p>PUBCHEM: 13705</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn141_p" name="cardiolipin-tetratetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C65H116O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C65H116O17P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ <p>PUBCHEM: 8259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34hpp_c" name="3-4-Hydroxyphenyl-pyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O4</p>
+ <p>CHEBI: 15999</p>
+ <p>KEGG: C01179</p>
+ <p>PUBCHEM: 4406</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5aprbu_c" name="5-Amino-6-5-phosphoribitylamino-uracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H15N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15N4O9P</p>
+ <p>CHEBI: 18247</p>
+ <p>KEGG: C04454</p>
+ <p>PUBCHEM: 7081</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ohexACP_c" name="3-Oxohexanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H29N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05746</p>
+ <p>PUBCHEM: 8041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_c" name="UDP-N-acetyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHEBI: 16264</p>
+ <p>KEGG: C00043</p>
+ <p>PUBCHEM: 3345</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_c" name="Cu2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHEBI: 28694</p>
+ <p>KEGG: C00070</p>
+ <p>PUBCHEM: 3370</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_p" name="3-hydroxycinnamic-acid" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_e" name="UDP-N-acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHEBI: 16264</p>
+ <p>KEGG: C00043</p>
+ <p>PUBCHEM: 3345</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_e" name="Cu2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHEBI: 28694</p>
+ <p>KEGG: C00070</p>
+ <p>PUBCHEM: 3370</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fc1p_c" name="L-Fuculose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O8P</p>
+ <p>CHEBI: 6220</p>
+ <p>KEGG: C01099</p>
+ <p>PUBCHEM: 4333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_p" name="Hydrogen-cyanide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CHN">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>CHEBI: 18407</p>
+ <p>KEGG: C01326</p>
+ <p>PUBCHEM: 4537</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_q8_c" name="Ubiquinone-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C49H74O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H74O4</p>
+ <p>CHEBI: 16389</p>
+ <p>KEGG: C00399</p>
+ <p>PUBCHEM: 3689</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_p" name="Cu2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHEBI: 28694</p>
+ <p>KEGG: C00070</p>
+ <p>PUBCHEM: 3370</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_p" name="UDP-N-acetyl-D-glucosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHEBI: 16264</p>
+ <p>KEGG: C00043</p>
+ <p>PUBCHEM: 3345</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rhcys_c" name="S-Ribosyl-L-homocysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H17NO6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H17NO6S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03539</p>
+ <p>PUBCHEM: 6343</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm3p_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H52N6O19">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H52N6O19</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_e" name="Hydrogen-cyanide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CHN">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>CHEBI: 18407</p>
+ <p>KEGG: C01326</p>
+ <p>PUBCHEM: 4537</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_grdp_c" name="Geranyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H17O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17O7P2</p>
+ <p>CHEBI: 17211</p>
+ <p>KEGG: C00341</p>
+ <p>PUBCHEM: 3634</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_c" name="Hydrogen-cyanide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CHN">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>CHEBI: 18407</p>
+ <p>KEGG: C01326</p>
+ <p>PUBCHEM: 4537</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg161_p" name="Phosphatidylglycerol-dihexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H70O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H70O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dpcoa_c" name="Dephospho-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H33N7O13P2S</p>
+ <p>CHEBI: 15468</p>
+ <p>KEGG: C00882</p>
+ <p>PUBCHEM: 4138</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp_c" name="dTDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O11P2</p>
+ <p>CHEBI: 18075</p>
+ <p>KEGG: C00363</p>
+ <p>PUBCHEM: 3654</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg161_c" name="Phosphatidylglycerol-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H70O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H70O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_palmACP_c" name="Palmitoyl-ACP-n-C160ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05764</p>
+ <p>PUBCHEM: 8059</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_p" name="Inosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>CHEBI: 17596</p>
+ <p>KEGG: C00294</p>
+ <p>PUBCHEM: 3588</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp7Oag_p" name="Undecaprenyl-diphosphate-O-antigene-7x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C223H370O126P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C223H370O126P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nicrnt_c" name="Nicotinate-D-ribonucleotide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO9P</p>
+ <p>CHEBI: 15763</p>
+ <p>KEGG: C01185</p>
+ <p>PUBCHEM: 4411</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_e" name="3-hydroxycinnamic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_c" name="Salmochelin-SX" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_e" name="Salmochelin-SX" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_e" name="L-Lyxose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 28480</p>
+ <p>KEGG: C01508</p>
+ <p>PUBCHEM: 4676</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_e" name="cis-Aconitate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>CHEBI: 32805</p>
+ <p>KEGG: C00417</p>
+ <p>PUBCHEM: 3707</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_p" name="D-Alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 15570</p>
+ <p>KEGG: C00133</p>
+ <p>PUBCHEM: 3433</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mercppyr_c" name="Mercaptopyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3S</p>
+ <p>CHEBI: 16208</p>
+ <p>KEGG: C00957</p>
+ <p>PUBCHEM: 4208</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4L_c" name="KDO-2-lipid-IV-A-with-laurate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C96H170N2O38P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C96H170N2O38P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06251</p>
+ <p>PUBCHEM: 8490</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_e" name="D-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 15570</p>
+ <p>KEGG: C00133</p>
+ <p>PUBCHEM: 3433</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_c" name="D-Alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 15570</p>
+ <p>KEGG: C00133</p>
+ <p>PUBCHEM: 3433</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asntrna_c" name="L-Asparaginyl-tRNA-Asn" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H23N2O12PR2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H23N2O12PR2</p>
+ <p>CHEBI: 29265</p>
+ <p>KEGG: C03402</p>
+ <p>PUBCHEM: 6232</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_p" name="Hexanoate-n-C60" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>CHEBI: 30776</p>
+ <p>KEGG: C01585</p>
+ <p>PUBCHEM: 4740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_p" name="UDPgalactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHEBI: 18307</p>
+ <p>KEGG: C00052</p>
+ <p>PUBCHEM: 3354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pap_c" name="Adenosine-3-5-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O10P2</p>
+ <p>CHEBI: 17985</p>
+ <p>KEGG: C00054</p>
+ <p>PUBCHEM: 3356</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_c" name="Inosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>CHEBI: 17596</p>
+ <p>KEGG: C00294</p>
+ <p>PUBCHEM: 3588</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipidAds_c" name="Lipid-A-Disaccharide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C68H127N2O20P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H127N2O20P</p>
+ <p>CHEBI: 18380</p>
+ <p>KEGG: C04932</p>
+ <p>PUBCHEM: 7476</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_c" name="UDPgalactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHEBI: 18307</p>
+ <p>KEGG: C00052</p>
+ <p>PUBCHEM: 3354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_c" name="Hexanoate-n-C60" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>CHEBI: 30776</p>
+ <p>KEGG: C01585</p>
+ <p>PUBCHEM: 4740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_e" name="Hexanoate-n-C60" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>CHEBI: 30776</p>
+ <p>KEGG: C01585</p>
+ <p>PUBCHEM: 4740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_e" name="UDPgalactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHEBI: 18307</p>
+ <p>KEGG: C00052</p>
+ <p>PUBCHEM: 3354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acac_p" name="Acetoacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00164</p>
+ <p>PUBCHEM: 3464</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adprib_c" name="ADPribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O14P2</p>
+ <p>CHEBI: 16960</p>
+ <p>KEGG: C00301</p>
+ <p>PUBCHEM: 3595</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c7mrseACP_c" name="trans-3-cis-7-myristoleoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H43N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H43N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adcobn_c" name="Adenosylcobyric-acid" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C55H76CoN15O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H76CoN15O11</p>
+ <p>CHEBI: 2483</p>
+ <p>KEGG: C06507</p>
+ <p>PUBCHEM: 8738</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acac_e" name="Acetoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00164</p>
+ <p>PUBCHEM: 3464</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipidA_c" name="2-3-2-3-Tetrakis-beta-hydroxymyristoyl-D-glucosaminyl-1-6-beta-D-glucosamine-1-4-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C68H126N2O23P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H126N2O23P2</p>
+ <p>CHEBI: 18380</p>
+ <p>KEGG: C04932</p>
+ <p>PUBCHEM: 7476</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_c" name="O-Acetyl-L-serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>CHEBI: 17981</p>
+ <p>KEGG: C00979</p>
+ <p>PUBCHEM: 4228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg120_p" name="Phosphatidylglycerol-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H58O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H58O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_e" name="O-Acetyl-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>CHEBI: 17981</p>
+ <p>KEGG: C00979</p>
+ <p>PUBCHEM: 4228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_p" name="D-Galactarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00879</p>
+ <p>PUBCHEM: 4135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>CHEBI: 18021 44897</p>
+ <p>KEGG: C00074</p>
+ <p>PUBCHEM: 3374</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_e" name="Phosphoenolpyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>CHEBI: 18021 44897</p>
+ <p>KEGG: C00074</p>
+ <p>PUBCHEM: 3374</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg120_c" name="Phosphatidylglycerol-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H58O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H58O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcpalm9eACP_c" name="R-3-hydroxy-cis-palm-9-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_e" name="D-Galactarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00879</p>
+ <p>PUBCHEM: 4135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_c" name="D-Galactarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00879</p>
+ <p>PUBCHEM: 4135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppgpp_c" name="Guanosine-3-5-bis-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C10H11N5O17P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O17P4</p>
+ <p>CHEBI: 17633</p>
+ <p>KEGG: C01228</p>
+ <p>PUBCHEM: 4450</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnacys_c" name="tRNA-Cys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29167</p>
+ <p>KEGG: C01639</p>
+ <p>PUBCHEM: 4788</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs1_c" name="salchs1_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_e" name="sulfur-dioxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>CHEBI: 18422</p>
+ <p>KEGG: C09306</p>
+ <p>PUBCHEM: 11497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcoa_c" name="Hexadecenoyl-CoA-n-C161CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O17P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_p" name="Maltose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 17306</p>
+ <p>KEGG: C00208</p>
+ <p>PUBCHEM: 3508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_e" name="D-Glyceraldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHEBI: 17378</p>
+ <p>KEGG: C00577</p>
+ <p>PUBCHEM: 3856</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_c" name="D-Glyceraldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHEBI: 17378</p>
+ <p>KEGG: C00577</p>
+ <p>PUBCHEM: 3856</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_c" name="Maltose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 17306</p>
+ <p>KEGG: C00208</p>
+ <p>PUBCHEM: 3508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_e" name="Maltose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 17306</p>
+ <p>KEGG: C00208</p>
+ <p>PUBCHEM: 3508</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_p" name="D-Glyceraldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHEBI: 17378</p>
+ <p>KEGG: C00577</p>
+ <p>PUBCHEM: 3856</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cystrna_c" name="L-Cysteinyl-tRNA-Cys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOSR</p>
+ <p>CHEBI: 29152</p>
+ <p>KEGG: C03125</p>
+ <p>PUBCHEM: 6018</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpg_c" name="udcpg_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 16046</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 7121</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_taur_e" name="Taurine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H7NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>CHEBI: 15891</p>
+ <p>KEGG: C00245</p>
+ <p>PUBCHEM: 3544</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peamn_p" name="Phenethylamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>CHEBI: 18397</p>
+ <p>KEGG: C05332</p>
+ <p>PUBCHEM: 7711</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_p" name="D-tartrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHEBI: 15672</p>
+ <p>KEGG: C02107</p>
+ <p>PUBCHEM: 5189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl5p_c" name="1-deoxy-D-xylulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>CHEBI: 16493</p>
+ <p>KEGG: C11437</p>
+ <p>PUBCHEM: 13609</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_s7p_c" name="Sedoheptulose-7-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>CHEBI: 15721</p>
+ <p>KEGG: C00281</p>
+ <p>PUBCHEM: 3576</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peamn_e" name="Phenethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>CHEBI: 18397</p>
+ <p>KEGG: C05332</p>
+ <p>PUBCHEM: 7711</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_taur_p" name="Taurine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H7NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>CHEBI: 15891</p>
+ <p>KEGG: C00245</p>
+ <p>PUBCHEM: 3544</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_e" name="L-Lysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>CHEBI: 18019</p>
+ <p>KEGG: C00047</p>
+ <p>PUBCHEM: 3349</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odec11eg3p_p" name="2-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H40O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H40O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_p" name="L-methionine-R-sulfoxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 847</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg160_c" name="acyl-phosphatidylglycerol-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C54H104O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C54H104O11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_p" name="myo-Inositol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 17268</p>
+ <p>KEGG: C00137</p>
+ <p>PUBCHEM: 3437</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_p" name="L-Lysine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>CHEBI: 18019</p>
+ <p>KEGG: C00047</p>
+ <p>PUBCHEM: 3349</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_e" name="myo-Inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 17268</p>
+ <p>KEGG: C00137</p>
+ <p>PUBCHEM: 3437</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_c" name="myo-Inositol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 17268</p>
+ <p>KEGG: C00137</p>
+ <p>PUBCHEM: 3437</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thdp_c" name="2-3-4-5-Tetrahydrodipicolinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H7NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7NO4</p>
+ <p>CHEBI: 864</p>
+ <p>KEGG: C03972</p>
+ <p>PUBCHEM: 6692</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmnmanabe_c" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C79H130O24P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H130O24P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abutn_c" name="4-Aminobutanal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H10NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H10NO</p>
+ <p>CHEBI: 17769</p>
+ <p>KEGG: C00555</p>
+ <p>PUBCHEM: 3835</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_e" name="UDP-D-glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>CHEBI: 17200</p>
+ <p>KEGG: C00167</p>
+ <p>PUBCHEM: 3467</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_c" name="UDP-D-glucuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>CHEBI: 17200</p>
+ <p>KEGG: C00167</p>
+ <p>PUBCHEM: 3467</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acanth_c" name="N-Acetylanthranilate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H8NO3</p>
+ <p>CHEBI: 16803</p>
+ <p>KEGG: C06332</p>
+ <p>PUBCHEM: 8568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_e" name="R-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHEBI: 28972</p>
+ <p>KEGG: C02912</p>
+ <p>PUBCHEM: 5836</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_c" name="R-Propane-1-2-diol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>CHEBI: 28972</p>
+ <p>KEGG: C02912</p>
+ <p>PUBCHEM: 5836</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2p4c2me_c" name="2-phospho-4-cytidine-5-diphospho-2-C-methyl-D-erythritol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H22N3O17P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H22N3O17P3</p>
+ <p>CHEBI: 16840</p>
+ <p>KEGG: C11436</p>
+ <p>PUBCHEM: 13608</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_p" name="UDP-D-glucuronate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>CHEBI: 17200</p>
+ <p>KEGG: C00167</p>
+ <p>PUBCHEM: 3467</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe181_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H46NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_e" name="L-Prolinylglycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dda7p_c" name="2-Dehydro-3-deoxy-D-arabino-heptonate-7-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H10O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O10P</p>
+ <p>CHEBI: 18150</p>
+ <p>KEGG: C04691</p>
+ <p>PUBCHEM: 7271</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2mb4p_c" name="1-hydroxy-2-methyl-2-E-butenyl-4-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O8P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P2</p>
+ <p>CHEBI: 15664</p>
+ <p>KEGG: C11811</p>
+ <p>PUBCHEM: 13975</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_c" name="L-Prolinylglycine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhmp_c" name="R-2-3-Dihydroxy-3-methylpentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O4</p>
+ <p>CHEBI: 27512 49258</p>
+ <p>KEGG: C06007</p>
+ <p>PUBCHEM: 8280</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpfuc_c" name="GDP-L-fucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O15P2</p>
+ <p>CHEBI: 17009</p>
+ <p>KEGG: C00325</p>
+ <p>PUBCHEM: 3619</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe181_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H46NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H46NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phhlipa_c" name="phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C124H219N2O54P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C124H219N2O54P3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_p" name="L-Prolinylglycine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_p" name="Formate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>CHEBI: 30751</p>
+ <p>KEGG: C00058</p>
+ <p>PUBCHEM: 3358</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_e" name="Deoxyuridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>CHEBI: 16450</p>
+ <p>KEGG: C00526</p>
+ <p>PUBCHEM: 3809</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmrs2eACP_c" name="trans-Tetradec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05760</p>
+ <p>PUBCHEM: 8055</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs_c" name="2-3-dihydroxybenzoylserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04204</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_c" name="Deoxyuridine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>CHEBI: 16450</p>
+ <p>KEGG: C00526</p>
+ <p>PUBCHEM: 3809</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrp_e" name="Phosphotyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06501</p>
+ <p>PUBCHEM: 8732</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_e" name="Formate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>CHEBI: 30751</p>
+ <p>KEGG: C00058</p>
+ <p>PUBCHEM: 3358</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_c" name="Formate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>CHEBI: 30751</p>
+ <p>KEGG: C00058</p>
+ <p>PUBCHEM: 3358</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_p" name="Deoxyuridine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>CHEBI: 16450</p>
+ <p>KEGG: C00526</p>
+ <p>PUBCHEM: 3809</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpacgal_p" name="UDP-N-acetyl-D-galactosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHEBI: 16650</p>
+ <p>KEGG: C00203</p>
+ <p>PUBCHEM: 3503</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_c" name="Aminoimidazole-riboside" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_e" name="Aminoimidazole-riboside" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpacgal_e" name="UDP-N-acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>CHEBI: 16650</p>
+ <p>KEGG: C00203</p>
+ <p>PUBCHEM: 3503</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmhep7p_c" name="D-Glycero-D-manno-heptose-7-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H13O10P</p>
+ <p>CHEBI: 28723</p>
+ <p>KEGG: C07836</p>
+ <p>PUBCHEM: 10038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alatrna_c" name="L-Alanyl-tRNA-Ala" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NOR</p>
+ <p>CHEBI: 17732</p>
+ <p>KEGG: C00886</p>
+ <p>PUBCHEM: 4142</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_p" name="Aminoimidazole-riboside" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cob1nda_c" name="Cob-I-yrinate-a-c-diamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H56CoN6O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H56CoN6O12</p>
+ <p>CHEBI: 28531</p>
+ <p>KEGG: C06505</p>
+ <p>PUBCHEM: 8736</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nadp_c" name="Nicotinamide-adenine-dinucleotide-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H25N7O17P3</p>
+ <p>CHEBI: 18009</p>
+ <p>KEGG: C00006</p>
+ <p>PUBCHEM: 3308</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uLa4fn_c" name="undecaprenyl-phosphate-4-amino-4-formyl-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H99N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C61H99N1O8P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucarg_c" name="N2-Succinyl-L-arginine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H17N4O5</p>
+ <p>CHEBI: 17705</p>
+ <p>KEGG: C03296</p>
+ <p>PUBCHEM: 6152</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_c" name="L-Cystine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>CHEBI: 16283</p>
+ <p>KEGG: C00491</p>
+ <p>PUBCHEM: 3774</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_e" name="dGMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 16192</p>
+ <p>KEGG: C00362</p>
+ <p>PUBCHEM: 3653</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmlz_c" name="6-7-Dimethyl-8-1-D-ribityl-lumazine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C13H18N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H18N4O6</p>
+ <p>CHEBI: 17601</p>
+ <p>KEGG: C04332</p>
+ <p>PUBCHEM: 6983</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_c" name="dGMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 16192</p>
+ <p>KEGG: C00362</p>
+ <p>PUBCHEM: 3653</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_e" name="L-Cystine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>CHEBI: 16283</p>
+ <p>KEGG: C00491</p>
+ <p>PUBCHEM: 3774</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc2p_p" name="Glycerol-2-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHEBI: 17270</p>
+ <p>KEGG: C02979</p>
+ <p>PUBCHEM: 5889</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thmpp_c" name="Thiamine-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H16N4O7P2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H16N4O7P2S</p>
+ <p>CHEBI: 9532</p>
+ <p>KEGG: C00068</p>
+ <p>PUBCHEM: 3368</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_p" name="L-Cystine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>CHEBI: 16283</p>
+ <p>KEGG: C00491</p>
+ <p>PUBCHEM: 3774</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhor__S_c" name="S-Dihydroorotate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N2O4</p>
+ <p>CHEBI: 17025</p>
+ <p>KEGG: C00337</p>
+ <p>PUBCHEM: 3630</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_p" name="dGMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 16192</p>
+ <p>KEGG: C00362</p>
+ <p>PUBCHEM: 3653</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_p" name="Formamide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH3NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>CHEBI: 16397</p>
+ <p>KEGG: C00488</p>
+ <p>PUBCHEM: 3771</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo8p_c" name="3-Deoxy-D-manno-octulosonate-8-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H12O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12O11P</p>
+ <p>CHEBI: 18069</p>
+ <p>KEGG: C04478</p>
+ <p>PUBCHEM: 7098</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_p" name="L-Homoserine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHEBI: 15699</p>
+ <p>KEGG: C00263</p>
+ <p>PUBCHEM: 3561</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_c" name="D-Fructose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: C00085</p>
+ <p>PUBCHEM: 3385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_c" name="L-Homoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHEBI: 15699</p>
+ <p>KEGG: C00263</p>
+ <p>PUBCHEM: 3561</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_um4p_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H56N8O27P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H56N8O27P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_c" name="Formamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH3NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>CHEBI: 16397</p>
+ <p>KEGG: C00488</p>
+ <p>PUBCHEM: 3771</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_p" name="D-Fructose-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: C00085</p>
+ <p>PUBCHEM: 3385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_e" name="Formamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH3NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>CHEBI: 16397</p>
+ <p>KEGG: C00488</p>
+ <p>PUBCHEM: 3771</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_e" name="L-Homoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHEBI: 15699</p>
+ <p>KEGG: C00263</p>
+ <p>PUBCHEM: 3561</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nadh_c" name="Nicotinamide-adenine-dinucleotide--reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H27N7O14P2</p>
+ <p>CHEBI: 16908</p>
+ <p>KEGG: C00004</p>
+ <p>PUBCHEM: 3306</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocACP_c" name="Octanoyl-ACP-n-C80ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H35N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05752</p>
+ <p>PUBCHEM: 8047</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mi1p__D_c" name="1D-myo-Inositol-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 18297</p>
+ <p>KEGG: C01177</p>
+ <p>PUBCHEM: 4404</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr140_p" name="1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H60O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H60O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaglu_c" name="tRNA-Glu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29175</p>
+ <p>KEGG: C01641</p>
+ <p>PUBCHEM: 4790</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr140_c" name="1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H60O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H60O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pant__R_c" name="R-Pantoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O4</p>
+ <p>CHEBI: 14737 15980</p>
+ <p>KEGG: C00522</p>
+ <p>PUBCHEM: 3805</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dopa_e" name="Dopamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>CHEBI: 18243</p>
+ <p>KEGG: C03758</p>
+ <p>PUBCHEM: 6517</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1ddecg3p_p" name="1-dodecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H29O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H29O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_p" name="Oxaloacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>CHEBI: 30744</p>
+ <p>KEGG: C00036</p>
+ <p>PUBCHEM: 3338</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_e" name="Orotate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>CHEBI: 16742</p>
+ <p>KEGG: C00295</p>
+ <p>PUBCHEM: 3589</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_toctd2eACP_c" name="trans-octadec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_c" name="L-Proline" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>CHEBI: 17203</p>
+ <p>KEGG: C00148</p>
+ <p>PUBCHEM: 3448</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_e" name="L-Proline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>CHEBI: 17203</p>
+ <p>KEGG: C00148</p>
+ <p>PUBCHEM: 3448</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_c" name="Orotate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>CHEBI: 16742</p>
+ <p>KEGG: C00295</p>
+ <p>PUBCHEM: 3589</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_e" name="Oxaloacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>CHEBI: 30744</p>
+ <p>KEGG: C00036</p>
+ <p>PUBCHEM: 3338</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1ddecg3p_c" name="1-dodecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H29O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H29O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dopa_p" name="Dopamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>CHEBI: 18243</p>
+ <p>KEGG: C03758</p>
+ <p>PUBCHEM: 6517</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_c" name="Oxaloacetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>CHEBI: 30744</p>
+ <p>KEGG: C00036</p>
+ <p>PUBCHEM: 3338</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_p" name="L-Proline" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>CHEBI: 17203</p>
+ <p>KEGG: C00148</p>
+ <p>PUBCHEM: 3448</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_p" name="Orotate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>CHEBI: 16742</p>
+ <p>KEGG: C00295</p>
+ <p>PUBCHEM: 3589</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ohpb_c" name="2-Oxo-3-hydroxy-4-phosphobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C4H4O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O8P</p>
+ <p>CHEBI: 27951</p>
+ <p>KEGG: C06054</p>
+ <p>PUBCHEM: 8324</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_p" name="L-Arabinose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 17535</p>
+ <p>KEGG: C00259</p>
+ <p>PUBCHEM: 3558</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_p" name="Ethanol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>CHEBI: 16236</p>
+ <p>KEGG: C00469</p>
+ <p>PUBCHEM: 3752</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_e" name="L-Arabinose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 17535</p>
+ <p>KEGG: C00259</p>
+ <p>PUBCHEM: 3558</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_c" name="L-Arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 17535</p>
+ <p>KEGG: C00259</p>
+ <p>PUBCHEM: 3558</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe161_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H42NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H42NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ <p>PUBCHEM: 7069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_p" name="Fe-III-hydroxamate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06227</p>
+ <p>PUBCHEM: 8470</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_d5kg_c" name="d5kg_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 27972</p>
+ <p>KEGG: C06892</p>
+ <p>PUBCHEM: 9109</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm5p_c" name="Shikimate-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H8O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O8P</p>
+ <p>CHEBI: 17052</p>
+ <p>KEGG: C03175</p>
+ <p>PUBCHEM: 6057</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp13Oag_p" name="Undecaprenyl-diphosphate-O-antigene-13x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C367H610O228P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C367H610O228P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acACP_c" name="Acetyl-ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H23N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H23N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03939</p>
+ <p>PUBCHEM: 6663</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_e" name="Glycine-betaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHEBI: 17750</p>
+ <p>KEGG: C00719</p>
+ <p>PUBCHEM: 3985</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_c" name="Glycine-betaine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHEBI: 17750</p>
+ <p>KEGG: C00719</p>
+ <p>PUBCHEM: 3985</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdddecg_c" name="CDP-1-2-didodecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H63N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H63N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ <p>PUBCHEM: 3567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_e" name="Fe-III-hydroxamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06227</p>
+ <p>PUBCHEM: 8470</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_citr__L_c" name="L-Citrulline" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13N3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13N3O3</p>
+ <p>CHEBI: 16349</p>
+ <p>KEGG: C00327</p>
+ <p>PUBCHEM: 3621</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_p" name="Glycine-betaine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>CHEBI: 17750</p>
+ <p>KEGG: C00719</p>
+ <p>PUBCHEM: 3985</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gggagicolipa_c" name="glucosyl-glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C169H291N2O94P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C169H291N2O94P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe160_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H44NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ <p>PUBCHEM: 7069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdodec11eg_c" name="CDP-1-2-dioctadec-11-enoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C48H83N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H83N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ <p>PUBCHEM: 3567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_actACP_c" name="Acetoacetyl-ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05744</p>
+ <p>PUBCHEM: 8039</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gicolipa_c" name="glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C151H261N2O79P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H261N2O79P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_bbtcoa_c" name="gamma-butyrobetainyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H46N8O17P3S</p>
+ <p>CHEBI: 28684</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 726??6196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_e" name="D-Fructose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 15824</p>
+ <p>KEGG: C00095</p>
+ <p>PUBCHEM: 3395</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3gmp_e" name="3-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06193</p>
+ <p>PUBCHEM: 8443</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_methf_c" name="5-10-Methenyltetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H20N7O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H20N7O6</p>
+ <p>CHEBI: 15638</p>
+ <p>KEGG: C00445</p>
+ <p>PUBCHEM: 3733</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_c" name="D-Fructose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 15824</p>
+ <p>KEGG: C00095</p>
+ <p>PUBCHEM: 3395</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agdpcbi_c" name="Adenosine-GDP-cobinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H95CoN21O21P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C68H95CoN21O21P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06510</p>
+ <p>PUBCHEM: 8741</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa141_p" name="1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H55O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H55O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4und_p" name="enterobacterial-common-antigen-x4-undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C151H234N12O67P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C151H234N12O67P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_p" name="D-Fructose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 15824</p>
+ <p>KEGG: C00095</p>
+ <p>PUBCHEM: 3395</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3gmp_p" name="3-GMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06193</p>
+ <p>PUBCHEM: 8443</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl6a_c" name="Cobalt-precorrin-6a" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H45CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H45CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11542</p>
+ <p>PUBCHEM: 13709</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ara5p_c" name="D-Arabinose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 16241</p>
+ <p>KEGG: C01112</p>
+ <p>PUBCHEM: 4344</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa141_c" name="1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H55O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H55O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_e" name="Co2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>CHEBI: 27638</p>
+ <p>KEGG: C00175</p>
+ <p>PUBCHEM: 3475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_c" name="Co2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>CHEBI: 27638</p>
+ <p>KEGG: C00175</p>
+ <p>PUBCHEM: 3475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dkdi_c" name="dkdi_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 4077</p>
+ <p>KEGG: C06891</p>
+ <p>PUBCHEM: 9108</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pmtcoa_c" name="Palmitoyl-CoA-n-C160CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H62N7O17P3S</p>
+ <p>CHEBI: 15525</p>
+ <p>KEGG: C00154</p>
+ <p>PUBCHEM: 3454</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hodcoa_c" name="S-3-Hydroxyoctadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H66N7O18P3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_p" name="Co2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>CHEBI: 27638</p>
+ <p>KEGG: C00175</p>
+ <p>PUBCHEM: 3475</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lpp_sp_p" name="lpp_sp_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hphhlipa_c" name="heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C131H231N2O60P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C131H231N2O60P3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_p" name="D-Serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHEBI: 16523</p>
+ <p>KEGG: C00740</p>
+ <p>PUBCHEM: 4003</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_p" name="Cys-Gly" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>CHEBI: 4047</p>
+ <p>KEGG: C01419</p>
+ <p>PUBCHEM: 4606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pan4p_c" name="Pantetheine-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H21N2O7PS</p>
+ <p>CHEBI: 16858</p>
+ <p>KEGG: C01134</p>
+ <p>PUBCHEM: 4365</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_e" name="Cys-Gly" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>CHEBI: 4047</p>
+ <p>KEGG: C01419</p>
+ <p>PUBCHEM: 4606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_c" name="D-Serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHEBI: 16523</p>
+ <p>KEGG: C00740</p>
+ <p>PUBCHEM: 4003</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_e" name="D-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>CHEBI: 16523</p>
+ <p>KEGG: C00740</p>
+ <p>PUBCHEM: 4003</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_c" name="Cys-Gly" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>CHEBI: 4047</p>
+ <p>KEGG: C01419</p>
+ <p>PUBCHEM: 4606</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phthr_c" name="O-Phospho-4-hydroxy-L-threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO7P</p>
+ <p>CHEBI: 18336</p>
+ <p>KEGG: C06055</p>
+ <p>PUBCHEM: 8325</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adcob1nda_c" name="Adenosyl-cobyrinate-a-c-diamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C55H68CoN11O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H68CoN11O15</p>
+ <p>CHEBI: 2482</p>
+ <p>KEGG: C06506</p>
+ <p>PUBCHEM: 8737</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dr1p_c" name="2-Deoxy-D-ribose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O7P</p>
+ <p>CHEBI: 28542</p>
+ <p>KEGG: C00672</p>
+ <p>PUBCHEM: 3941</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tagur_c" name="D-Tagaturonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 17886</p>
+ <p>KEGG: C00558</p>
+ <p>PUBCHEM: 3838</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt__D_e" name="D-Sorbitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHEBI: 17924</p>
+ <p>KEGG: C00794</p>
+ <p>PUBCHEM: 4052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl5a_c" name="Cobalt-precorrin-5a" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H46CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C45H46CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C16242</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_c" name="Urea" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH4N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>CHEBI: 16199</p>
+ <p>KEGG: C00086</p>
+ <p>PUBCHEM: 3386</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_p" name="Phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>CHEBI: 18367</p>
+ <p>KEGG: C00009</p>
+ <p>PUBCHEM: 3311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdpmann_c" name="GDP-D-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H23N5O16P2</p>
+ <p>CHEBI: 15820</p>
+ <p>KEGG: C00096</p>
+ <p>PUBCHEM: 3396</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_protrna_c" name="L-Prolyl-tRNA-Pro" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H8NOR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NOR</p>
+ <p>CHEBI: 29154</p>
+ <p>KEGG: C02702</p>
+ <p>PUBCHEM: 5665</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4px4px4p_p" name="three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C111H167N21O58">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C111H167N21O58</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt__D_p" name="D-Sorbitol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHEBI: 17924</p>
+ <p>KEGG: C00794</p>
+ <p>PUBCHEM: 4052</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_c" name="Phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>CHEBI: 18367</p>
+ <p>KEGG: C00009</p>
+ <p>PUBCHEM: 3311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_e" name="Phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>CHEBI: 18367</p>
+ <p>KEGG: C00009</p>
+ <p>PUBCHEM: 3311</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg120_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H36O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H36O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe161_p" name="phosphatidylethanolamine-dihexadec-9enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H70N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H70N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hcys__L_c" name="L-Homocysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2S</p>
+ <p>CHEBI: 17588</p>
+ <p>KEGG: C00155</p>
+ <p>PUBCHEM: 3455</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe161_c" name="phosphatidylethanolamine-dihexadec-9enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H70N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H70N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2h3oppan_c" name="2-Hydroxy-3-oxopropanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O4</p>
+ <p>CHEBI: 16992</p>
+ <p>KEGG: C01146</p>
+ <p>PUBCHEM: 4376</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctp_c" name="CTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O14P3</p>
+ <p>CHEBI: 17677</p>
+ <p>KEGG: C00063</p>
+ <p>PUBCHEM: 3363</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe120_c" name="phosphatidylethanolamine-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C29H58N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H58N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppg9_c" name="Protoporphyrinogen-IX" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H38N4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H38N4O4</p>
+ <p>CHEBI: 15435</p>
+ <p>KEGG: C01079</p>
+ <p>PUBCHEM: 4317</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_c" name="Fe-III-hydroxamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06227</p>
+ <p>PUBCHEM: 8470</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe120_p" name="phosphatidylethanolamine-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C29H58N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H58N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ru5p__D_c" name="D-Ribulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 17363</p>
+ <p>KEGG: C00199</p>
+ <p>PUBCHEM: 3499</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3odcoa_c" name="3-Oxodecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48N7O18P3S</p>
+ <p>CHEBI: 28528</p>
+ <p>KEGG: C05265</p>
+ <p>PUBCHEM: 7652</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4r5au_c" name="4-1-D-Ribitylamino-5-aminouracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H16N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16N4O6</p>
+ <p>CHEBI: 15934</p>
+ <p>KEGG: C04732</p>
+ <p>PUBCHEM: 7303</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ru5p__L_c" name="L-Ribulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 17666</p>
+ <p>KEGG: C01101</p>
+ <p>PUBCHEM: 4335</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdec7eg3p_c" name="2-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H32O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H32O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2tdec7eg3p_p" name="2-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H32O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H32O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpac_p" name="3-4-Dihydroxyphenylacetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04043</p>
+ <p>PUBCHEM: 6744</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mqn8_c" name="Menaquinone-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C51H72O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C51H72O2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00828</p>
+ <p>PUBCHEM: 4086</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oc2coa_c" name="trans-Oct-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N7O17P3S</p>
+ <p>CHEBI: 27537</p>
+ <p>KEGG: C05276</p>
+ <p>PUBCHEM: 7663</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpac_e" name="3-4-Dihydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04043</p>
+ <p>PUBCHEM: 6744</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_c" name="tricarballylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6</p>
+ <p>CHEBI: 62517</p>
+ <p>KEGG: C19806</p>
+ <p>PUBCHEM: 135626273</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dann_c" name="7-8-Diaminononanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H21N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H21N2O2</p>
+ <p>CHEBI: 2247</p>
+ <p>KEGG: C01037</p>
+ <p>PUBCHEM: 4280</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_e" name="tricarballylate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6</p>
+ <p>CHEBI: 62517</p>
+ <p>KEGG: C19806</p>
+ <p>PUBCHEM: 135626273</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thex2eACP_c" name="trans-Hex-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H29N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H29N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05748</p>
+ <p>PUBCHEM: 8043</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tddec2eACP_c" name="trans-Dodec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05758</p>
+ <p>PUBCHEM: 8053</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5drib_c" name="5-deoxyribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3449</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbasp_c" name="N-Carbamoyl-L-aspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O5</p>
+ <p>CHEBI: 15859</p>
+ <p>KEGG: C00438</p>
+ <p>PUBCHEM: 3727</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_p" name="tricarballylate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6</p>
+ <p>CHEBI: 62517</p>
+ <p>KEGG: C19806</p>
+ <p>PUBCHEM: 135626273</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_seramp_c" name="L-seryl-AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C13H19N6O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H19N6O9P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05820</p>
+ <p>PUBCHEM: 8115</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_N1aspmd_c" name="N1-Acetylspermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H23N3O</p>
+ <p>CHEBI: 17927</p>
+ <p>KEGG: C00612</p>
+ <p>PUBCHEM: 3886</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg161_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H42O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_p" name="dAMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>CHEBI: 17713</p>
+ <p>KEGG: C00360</p>
+ <p>PUBCHEM: 3651</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhnpt_c" name="Dihydroneopterin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N5O4</p>
+ <p>CHEBI: 17001</p>
+ <p>KEGG: C04874</p>
+ <p>PUBCHEM: 7426</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r1p_c" name="alpha-D-Ribose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00442</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_c" name="dAMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>CHEBI: 17713</p>
+ <p>KEGG: C00360</p>
+ <p>PUBCHEM: 3651</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_e" name="dAMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>CHEBI: 17713</p>
+ <p>KEGG: C00360</p>
+ <p>PUBCHEM: 3651</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glytrna_c" name="Glycyl-tRNA-Gly" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H4NOR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4NOR</p>
+ <p>CHEBI: 29156</p>
+ <p>KEGG: C02412</p>
+ <p>PUBCHEM: 5445</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_p" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_p" name="D-Glucose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4167</p>
+ <p>KEGG: C00031</p>
+ <p>PUBCHEM: 3333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idp_c" name="IDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O11P2</p>
+ <p>CHEBI: 17808</p>
+ <p>KEGG: C00104</p>
+ <p>PUBCHEM: 3404</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lystrna_c" name="L-Lysine-tRNA-Lys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H14N2OR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14N2OR</p>
+ <p>CHEBI: 16047</p>
+ <p>KEGG: C01931</p>
+ <p>PUBCHEM: 5037</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_c" name="D-Glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4167</p>
+ <p>KEGG: C00031</p>
+ <p>PUBCHEM: 3333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_e" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 4167</p>
+ <p>KEGG: C00031</p>
+ <p>PUBCHEM: 3333</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg160_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H44O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sulfac_p" name="sulfoacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H2O5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C14179</p>
+ <p>PUBCHEM: 7846991</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frdp_c" name="Farnesyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25O7P2</p>
+ <p>CHEBI: 17407</p>
+ <p>KEGG: C00448</p>
+ <p>PUBCHEM: 3736</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocddec5eACP_c" name="3-oxo-cis-dodec-5-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H39N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H39N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg160_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H44O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H44O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sulfac_e" name="sulfoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H2O5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C14179</p>
+ <p>PUBCHEM: 7846991</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dh3dgal_c" name="2-Dehydro-3-deoxy-D-galactonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHEBI: 17028</p>
+ <p>KEGG: C01216</p>
+ <p>PUBCHEM: 4438</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leutrna_c" name="L-Leucyl-tRNA-Leu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12NOR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12NOR</p>
+ <p>CHEBI: 16624</p>
+ <p>KEGG: C02047</p>
+ <p>PUBCHEM: 5136</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_seln_c" name="Selenide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HSe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HSe</p>
+ <p>CHEBI: 16503</p>
+ <p>KEGG: C01528</p>
+ <p>PUBCHEM: 4690</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_actp_c" name="Acetyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H3O5P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O5P</p>
+ <p>CHEBI: 15350</p>
+ <p>KEGG: C00227</p>
+ <p>PUBCHEM: 3527</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_p" name="Propanal" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>CHEBI: 17153</p>
+ <p>KEGG: C00479</p>
+ <p>PUBCHEM: 3762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe2_ST_p" name="pe2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_c" name="Propanal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>CHEBI: 17153</p>
+ <p>KEGG: C00479</p>
+ <p>PUBCHEM: 3762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_e" name="Propanal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>CHEBI: 17153</p>
+ <p>KEGG: C00479</p>
+ <p>PUBCHEM: 3762</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ppan_c" name="D-4-Phosphopantothenate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H15NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15NO8P</p>
+ <p>CHEBI: 15905</p>
+ <p>KEGG: C03492</p>
+ <p>PUBCHEM: 6304</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_p" name="Ferrioxamine-G-fe" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_c" name="Xanthosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>CHEBI: 18107</p>
+ <p>KEGG: C01762</p>
+ <p>PUBCHEM: 4895</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppap_c" name="Propanoyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O5P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O5P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02876</p>
+ <p>PUBCHEM: 5809</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ocmrs7eACP_c" name="3-oxo-cis-myristol-7-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H43N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H43N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_db4p_c" name="3-4-dihydroxy-2-butanone-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15556</p>
+ <p>PUBCHEM: 17396548</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dhguln_c" name="2-Dehydro-L-gulonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 30769</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3458</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg141_c" name="Phosphatidylglycerol-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H62O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H62O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_e" name="L-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHEBI: 422</p>
+ <p>KEGG: C00186</p>
+ <p>PUBCHEM: 3486</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fpram_c" name="2-Formamido-N1-5-phospho-D-ribosyl-acetamidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15N3O8P</p>
+ <p>CHEBI: 18413</p>
+ <p>KEGG: C04640</p>
+ <p>PUBCHEM: 7229</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5px3p_p" name="two-disacharide-linked-murein-units-pentapeptide-corsslinked-tripeptide-A2pm-A2pm--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H112N14O39">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H112N14O39</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_stcoa_c" name="Stearoyl-CoA-n-C180CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H66N7O17P3S</p>
+ <p>CHEBI: 15541</p>
+ <p>KEGG: C00412</p>
+ <p>PUBCHEM: 3702</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp20Oag_p" name="Undecaprenyl-diphosphate-O-antigene-20x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C535H890O347P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C535H890O347P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe120_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H36NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H36NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg141_p" name="Phosphatidylglycerol-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H62O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H62O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_p" name="L-Lactate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>CHEBI: 422</p>
+ <p>KEGG: C00186</p>
+ <p>PUBCHEM: 3486</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_e" name="Ethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>CHEBI: 16000</p>
+ <p>KEGG: C00189</p>
+ <p>PUBCHEM: 3489</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_e" name="Ferrioxamine-G-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca3und_p" name="enterobacterial-common-antigen-x3-undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C127H198N9O52P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C127H198N9O52P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam_e" name="D-Glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>CHEBI: 47977</p>
+ <p>KEGG: C00329</p>
+ <p>PUBCHEM: 3623</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1hdecg3p_c" name="1-hexadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H37O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_c" name="Ethanolamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>CHEBI: 16000</p>
+ <p>KEGG: C00189</p>
+ <p>PUBCHEM: 3489</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_p" name="D-Glucose-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 4170</p>
+ <p>KEGG: C00092</p>
+ <p>PUBCHEM: 3392</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_c" name="Isocitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHEBI: 30887</p>
+ <p>KEGG: C00311</p>
+ <p>PUBCHEM: 3605</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_e" name="Isocitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHEBI: 30887</p>
+ <p>KEGG: C00311</p>
+ <p>PUBCHEM: 3605</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam_p" name="D-Glucosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>CHEBI: 47977</p>
+ <p>KEGG: C00329</p>
+ <p>PUBCHEM: 3623</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prbamp_c" name="1-5-Phosphoribosyl-AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H19N5O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O14P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02741</p>
+ <p>PUBCHEM: 5701</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_p" name="Ethanolamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>CHEBI: 16000</p>
+ <p>KEGG: C00189</p>
+ <p>PUBCHEM: 3489</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg180_p" name="Phosphatidylglycerol-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H82O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H82O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_p" name="Isocitrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>CHEBI: 30887</p>
+ <p>KEGG: C00311</p>
+ <p>PUBCHEM: 3605</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_c" name="D-Glucose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 4170</p>
+ <p>KEGG: C00092</p>
+ <p>PUBCHEM: 3392</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_e" name="D-Glucose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 4170</p>
+ <p>KEGG: C00092</p>
+ <p>PUBCHEM: 3392</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gagicolipa_c" name="galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C157H271N2O84P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C157H271N2O84P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_c" name="Ferrioxamine-G-fe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_e" name="D-Glucose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 16077 29042</p>
+ <p>KEGG: C00103</p>
+ <p>PUBCHEM: 3403</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_c" name="D-Glucose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 16077 29042</p>
+ <p>KEGG: C00103</p>
+ <p>PUBCHEM: 3403</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_c" name="L-Malate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: C00149</p>
+ <p>PUBCHEM: 3449</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ACP_c" name="acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H21N2O7PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00229</p>
+ <p>PUBCHEM: 3528</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_e" name="L-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: C00149</p>
+ <p>PUBCHEM: 3449</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_p" name="D-Glucose-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 16077 29042</p>
+ <p>KEGG: C00103</p>
+ <p>PUBCHEM: 3403</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_p" name="L-Malate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>CHEBI: 30797</p>
+ <p>KEGG: C00149</p>
+ <p>PUBCHEM: 3449</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aso3_p" name="arsenite" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="AsO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>CHEBI: 29866</p>
+ <p>KEGG: C06697</p>
+ <p>PUBCHEM: 8922</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ommbl_c" name="2-Octaprenyl-3-methyl-6-methoxy-1-4-benzoquinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H74O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H74O3</p>
+ <p>CHEBI: 28636</p>
+ <p>KEGG: C05814</p>
+ <p>PUBCHEM: 8109</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4px4p4p_p" name="three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--one-uncrosslinked-tetrapaptide--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C111H169N21O59">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C111H169N21O59</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tpalm2eACP_c" name="trans-Hexadec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05763</p>
+ <p>PUBCHEM: 8058</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aso3_e" name="arsenite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="AsO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>CHEBI: 29866</p>
+ <p>KEGG: C06697</p>
+ <p>PUBCHEM: 8922</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5px4px4p_p" name="three-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H172N22O59">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H172N22O59</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_btcoa_c" name="Butanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H38N7O17P3S</p>
+ <p>CHEBI: 15517</p>
+ <p>KEGG: C00136</p>
+ <p>PUBCHEM: 3436</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaLglu_c" name="L-alanine-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ccmp_e" name="2-3-Cyclic-CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H11N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02354</p>
+ <p>PUBCHEM: 5401</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_argtrna_c" name="L-Arginyl-tRNA-Arg" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H14N4OR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14N4OR</p>
+ <p>CHEBI: 18366</p>
+ <p>KEGG: C02163</p>
+ <p>PUBCHEM: 5239</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ccmp_p" name="2-3-Cyclic-CMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H11N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02354</p>
+ <p>PUBCHEM: 5401</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_occoa_c" name="Octanoyl-CoA-n-C80CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H46N7O17P3S</p>
+ <p>CHEBI: 15533</p>
+ <p>KEGG: C01944</p>
+ <p>PUBCHEM: 5048</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_c" name="GMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHEBI: 17345</p>
+ <p>KEGG: C00144</p>
+ <p>PUBCHEM: 3444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_p" name="Phenylacetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>CHEBI: 16424</p>
+ <p>KEGG: C00601</p>
+ <p>PUBCHEM: 3876</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_e" name="GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHEBI: 17345</p>
+ <p>KEGG: C00144</p>
+ <p>PUBCHEM: 3444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_p" name="GMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>CHEBI: 17345</p>
+ <p>KEGG: C00144</p>
+ <p>PUBCHEM: 3444</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_e" name="Phenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>CHEBI: 16424</p>
+ <p>KEGG: C00601</p>
+ <p>PUBCHEM: 3876</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4aaddg_c" name="dTDP-4-acetamido-4-6-dideoxy-D-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H27N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H27N3O15P2</p>
+ <p>CHEBI: 28294</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 8290</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_c" name="Phenylacetaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>CHEBI: 16424</p>
+ <p>KEGG: C00601</p>
+ <p>PUBCHEM: 3876</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_btn_c" name="Biotin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O3S</p>
+ <p>CHEBI: 15956</p>
+ <p>KEGG: C00120</p>
+ <p>PUBCHEM: 3420</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4iz5pp_c" name="4-Imidazolone-5-propanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H7N2O3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03680</p>
+ <p>PUBCHEM: 6455</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_p" name="Nitrous-oxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>CHEBI: 17045</p>
+ <p>KEGG: C00887</p>
+ <p>PUBCHEM: 4143</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4c2me_c" name="4-cytidine-5-diphospho-2-C-methyl-D-erythritol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H23N3O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H23N3O14P2</p>
+ <p>CHEBI: 16578</p>
+ <p>KEGG: C11435</p>
+ <p>PUBCHEM: 13607</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_c" name="Nitrous-oxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>CHEBI: 17045</p>
+ <p>KEGG: C00887</p>
+ <p>PUBCHEM: 4143</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_e" name="Nitrous-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>CHEBI: 17045</p>
+ <p>KEGG: C00887</p>
+ <p>PUBCHEM: 4143</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdec2eACP_c" name="trans-Dec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05754</p>
+ <p>PUBCHEM: 8049</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uamr_c" name="UDP-N-acetylmuramate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H28N3O19P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H28N3O19P2</p>
+ <p>CHEBI: 17882</p>
+ <p>KEGG: C01050</p>
+ <p>PUBCHEM: 4292</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_24dhhed_c" name="24dhhed_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06201</p>
+ <p>PUBCHEM: 8451</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_air_c" name="5-amino-1-5-phospho-D-ribosyl-imidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N3O7P</p>
+ <p>CHEBI: 28843</p>
+ <p>KEGG: C03373</p>
+ <p>PUBCHEM: 6208</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_athr__L_c" name="L-Allo-threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>CHEBI: 28718</p>
+ <p>KEGG: C05519</p>
+ <p>PUBCHEM: 7864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_Pald_c" name="Phosphonoacetaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H3O4P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O4P1</p>
+ <p>CHEBI: 18124</p>
+ <p>KEGG: C03167</p>
+ <p>PUBCHEM: 6050</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_e" name="L-Phenylalanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>CHEBI: 17295</p>
+ <p>KEGG: C00079</p>
+ <p>PUBCHEM: 3379</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_e" name="Calcium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>CHEBI: 29108</p>
+ <p>KEGG: C00076</p>
+ <p>PUBCHEM: 3376</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_p" name="L-Tyrosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>CHEBI: 17895</p>
+ <p>KEGG: C00082</p>
+ <p>PUBCHEM: 3382</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_c" name="Calcium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>CHEBI: 29108</p>
+ <p>KEGG: C00076</p>
+ <p>PUBCHEM: 3376</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbcox_p" name="protein-disulfide-isomerase-II-oxidized" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_c" name="L-Phenylalanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>CHEBI: 17295</p>
+ <p>KEGG: C00079</p>
+ <p>PUBCHEM: 3379</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe140_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H40NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fmnh2_c" name="Reduced-FMN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H21N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H21N4O9P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_e" name="L-Tyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>CHEBI: 17895</p>
+ <p>KEGG: C00082</p>
+ <p>PUBCHEM: 3382</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_p" name="L-Phenylalanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>CHEBI: 17295</p>
+ <p>KEGG: C00079</p>
+ <p>PUBCHEM: 3379</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5mdr1p_c" name="5-Methylthio-5-deoxy-D-ribose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7PS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04188</p>
+ <p>PUBCHEM: 6864</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_p" name="Calcium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>CHEBI: 29108</p>
+ <p>KEGG: C00076</p>
+ <p>PUBCHEM: 3376</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_c" name="L-Tyrosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>CHEBI: 17895</p>
+ <p>KEGG: C00082</p>
+ <p>PUBCHEM: 3382</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe140_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H40NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H40NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdecg3p_c" name="2-hexadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H38O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tym_e" name="Tyramine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>CHEBI: 15760</p>
+ <p>KEGG: C00483</p>
+ <p>PUBCHEM: 3766</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ahdt_c" name="2-Amino-4-hydroxy-6-erythro-1-2-3-trihydroxypropyl-dihydropteridine-triphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N5O13P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N5O13P3</p>
+ <p>CHEBI: 18372</p>
+ <p>KEGG: C04895</p>
+ <p>PUBCHEM: 7446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4p3p_p" name="two-linked-disacharide-tetrapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C71H109N13O39">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H109N13O39</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ohdcoa_c" name="3-Oxohexadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O18P3S</p>
+ <p>CHEBI: 15491</p>
+ <p>KEGG: C05259</p>
+ <p>PUBCHEM: 7646</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_e" name="D-Fructose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 15946</p>
+ <p>KEGG: C00085</p>
+ <p>PUBCHEM: 3385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2hdecg3p_p" name="2-hexadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H38O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tym_p" name="Tyramine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>CHEBI: 15760</p>
+ <p>KEGG: C00483</p>
+ <p>PUBCHEM: 3766</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_c" name="O-Phospho-L-serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>CHEBI: 15811</p>
+ <p>KEGG: C01005</p>
+ <p>PUBCHEM: 4251</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_e" name="O-Phospho-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>CHEBI: 15811</p>
+ <p>KEGG: C01005</p>
+ <p>PUBCHEM: 4251</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ethso3_e" name="ethanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_p" name="L-Tryptophan" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H12N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>CHEBI: 16828</p>
+ <p>KEGG: C00078</p>
+ <p>PUBCHEM: 3378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_p" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHEBI: 7125</p>
+ <p>KEGG: C04256</p>
+ <p>PUBCHEM: 6921</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_p" name="O-Phospho-L-serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>CHEBI: 15811</p>
+ <p>KEGG: C01005</p>
+ <p>PUBCHEM: 4251</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_e" name="L-Tryptophan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H12N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>CHEBI: 16828</p>
+ <p>KEGG: C00078</p>
+ <p>PUBCHEM: 3378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_e" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHEBI: 7125</p>
+ <p>KEGG: C04256</p>
+ <p>PUBCHEM: 6921</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_c" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHEBI: 7125</p>
+ <p>KEGG: C04256</p>
+ <p>PUBCHEM: 6921</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_c" name="L-Tryptophan" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H12N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>CHEBI: 16828</p>
+ <p>KEGG: C00078</p>
+ <p>PUBCHEM: 3378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ethso3_p" name="ethanesulfonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_c" name="L-Rhamnose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 16055</p>
+ <p>KEGG: C00507</p>
+ <p>PUBCHEM: 3790</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_e" name="sn-Glycero-3-phosphoethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H14NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01233</p>
+ <p>PUBCHEM: 4454</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_p" name="Glycerophosphoglycerol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03274</p>
+ <p>PUBCHEM: 6135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dc2coa_c" name="trans-Dec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H48N7O17P3S</p>
+ <p>CHEBI: 10723</p>
+ <p>KEGG: C05275</p>
+ <p>PUBCHEM: 7662</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_e" name="L-Rhamnose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 16055</p>
+ <p>KEGG: C00507</p>
+ <p>PUBCHEM: 3790</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_c" name="sn-Glycero-3-phosphoethanolamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H14NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01233</p>
+ <p>PUBCHEM: 4454</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp161_p" name="Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H69O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn160_p" name="cardiolipin-tetrahexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C73H140O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H140O17P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ <p>PUBCHEM: 8259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal1p_p" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_p" name="D-Xylose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 15936</p>
+ <p>KEGG: C00181</p>
+ <p>PUBCHEM: 3481</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_c" name="Glycerophosphoglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03274</p>
+ <p>PUBCHEM: 6135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_p" name="L-Rhamnose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 16055</p>
+ <p>KEGG: C00507</p>
+ <p>PUBCHEM: 3790</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_p" name="sn-Glycero-3-phosphoethanolamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H14NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01233</p>
+ <p>PUBCHEM: 4454</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_e" name="Glycerophosphoglycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03274</p>
+ <p>PUBCHEM: 6135</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_e" name="D-Xylose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 15936</p>
+ <p>KEGG: C00181</p>
+ <p>PUBCHEM: 3481</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_c" name="D-Xylose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 15936</p>
+ <p>KEGG: C00181</p>
+ <p>PUBCHEM: 3481</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal1p_e" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhf_c" name="7-8-Dihydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H19N7O6</p>
+ <p>CHEBI: 15633</p>
+ <p>KEGG: C00415</p>
+ <p>PUBCHEM: 3705</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_p" name="sn-Glycero-3-phosphocholine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H20NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>CHEBI: 16870</p>
+ <p>KEGG: C00670</p>
+ <p>PUBCHEM: 3939</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_p" name="Ornithine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>CHEBI: 18257</p>
+ <p>KEGG: C01602</p>
+ <p>PUBCHEM: 4756</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_p" name="Allantoin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H6N4O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>CHEBI: 15676</p>
+ <p>KEGG: C01551</p>
+ <p>PUBCHEM: 4709</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp120_c" name="Phosphatidylglycerophosphate-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C30H57O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_e" name="Ornithine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>CHEBI: 18257</p>
+ <p>KEGG: C01602</p>
+ <p>PUBCHEM: 4756</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_e" name="sn-Glycero-3-phosphocholine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H20NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>CHEBI: 16870</p>
+ <p>KEGG: C00670</p>
+ <p>PUBCHEM: 3939</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_c" name="Ornithine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>CHEBI: 18257</p>
+ <p>KEGG: C01602</p>
+ <p>PUBCHEM: 4756</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_c" name="AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>CHEBI: 16027</p>
+ <p>KEGG: C00020</p>
+ <p>PUBCHEM: 3322</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_e" name="Allantoin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H6N4O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>CHEBI: 15676</p>
+ <p>KEGG: C01551</p>
+ <p>PUBCHEM: 4709</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcaACP_c" name="Octadecanoyl-ACP-n-C180ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H55N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp120_p" name="Phosphatidylglycerophosphate-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C30H57O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H57O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_c" name="Allantoin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H6N4O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>CHEBI: 15676</p>
+ <p>KEGG: C01551</p>
+ <p>PUBCHEM: 4709</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltt_c" name="Allantoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7N4O4</p>
+ <p>CHEBI: 30837</p>
+ <p>KEGG: C00499</p>
+ <p>PUBCHEM: 3782</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_p" name="Deoxycytidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>CHEBI: 15698</p>
+ <p>KEGG: C00881</p>
+ <p>PUBCHEM: 4137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aps_c" name="Adenosine-5-phosphosulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10PS</p>
+ <p>CHEBI: 17709</p>
+ <p>KEGG: C00224</p>
+ <p>PUBCHEM: 3524</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl_e" name="D-Mannitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHEBI: 16899</p>
+ <p>KEGG: C00392</p>
+ <p>PUBCHEM: 3682</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23camp_p" name="2-3-Cyclic-AMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02353</p>
+ <p>PUBCHEM: 5400</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_c" name="Deoxycytidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>CHEBI: 15698</p>
+ <p>KEGG: C00881</p>
+ <p>PUBCHEM: 4137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_e" name="Deoxycytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>CHEBI: 15698</p>
+ <p>KEGG: C00881</p>
+ <p>PUBCHEM: 4137</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23camp_e" name="2-3-Cyclic-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02353</p>
+ <p>PUBCHEM: 5400</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl_p" name="D-Mannitol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>CHEBI: 16899</p>
+ <p>KEGG: C00392</p>
+ <p>PUBCHEM: 3682</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_p" name="rnam_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 15927</p>
+ <p>KEGG: C03150</p>
+ <p>PUBCHEM: 6038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ap4a_c" name="P1-P4-Bis-5-adenosyl-tetraphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C20H24N10O19P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H24N10O19P4</p>
+ <p>CHEBI: 17422</p>
+ <p>KEGG: C01260</p>
+ <p>PUBCHEM: 4479</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_c" name="rnam_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 15927</p>
+ <p>KEGG: C03150</p>
+ <p>PUBCHEM: 6038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_e" name="rnam_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 15927</p>
+ <p>KEGG: C03150</p>
+ <p>PUBCHEM: 6038</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_c" name="Sulfite" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>CHEBI: 48854</p>
+ <p>KEGG: C00094</p>
+ <p>PUBCHEM: 3394</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_e" name="Sulfite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>CHEBI: 48854</p>
+ <p>KEGG: C00094</p>
+ <p>PUBCHEM: 3394</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_e" name="Dihydroxyacetone" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHEBI: 16016</p>
+ <p>KEGG: C00184</p>
+ <p>PUBCHEM: 3484</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_c" name="Dihydroxyacetone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHEBI: 16016</p>
+ <p>KEGG: C00184</p>
+ <p>PUBCHEM: 3484</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peptido_ST_p" name="peptido_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_p" name="Sulfite" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>CHEBI: 48854</p>
+ <p>KEGG: C00094</p>
+ <p>PUBCHEM: 3394</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3oddcoa_c" name="3-Oxododecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H52N7O18P3S</p>
+ <p>CHEBI: 27868</p>
+ <p>KEGG: C05263</p>
+ <p>PUBCHEM: 7650</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_p" name="Dihydroxyacetone" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>CHEBI: 16016</p>
+ <p>KEGG: C00184</p>
+ <p>PUBCHEM: 3484</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dkmpp_c" name="2-3-diketo-5-methylthio-1-phosphopentane" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O6PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6PS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15650</p>
+ <p>PUBCHEM: 17396640</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrp_p" name="Phosphotyrosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06501</p>
+ <p>PUBCHEM: 8732</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_e" name="Formaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>CHEBI: 16842</p>
+ <p>KEGG: C00067</p>
+ <p>PUBCHEM: 3367</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_c" name="Formaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>CHEBI: 16842</p>
+ <p>KEGG: C00067</p>
+ <p>PUBCHEM: 3367</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_p" name="Nicotinate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>CHEBI: 15940</p>
+ <p>KEGG: C00253</p>
+ <p>PUBCHEM: 3552</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein_lpp_p" name="murein_lpp_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_c" name="D-tartrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHEBI: 15672</p>
+ <p>KEGG: C02107</p>
+ <p>PUBCHEM: 5189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_p" name="Formaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>CHEBI: 16842</p>
+ <p>KEGG: C00067</p>
+ <p>PUBCHEM: 3367</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_e" name="D-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>CHEBI: 15672</p>
+ <p>KEGG: C02107</p>
+ <p>PUBCHEM: 5189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_p" name="D-Mannose-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 17369</p>
+ <p>KEGG: C00275</p>
+ <p>PUBCHEM: 3572</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_Nmtrp_c" name="N-Methyltryptophan" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H14N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H14N2O2</p>
+ <p>CHEBI: 15334</p>
+ <p>KEGG: C02983</p>
+ <p>PUBCHEM: 5892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnapro_c" name="tRNA-Pro" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29177</p>
+ <p>KEGG: C01649</p>
+ <p>PUBCHEM: 4798</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_e" name="Ferrichrome" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06228</p>
+ <p>PUBCHEM: 8471</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_c" name="Ferrichrome" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06228</p>
+ <p>PUBCHEM: 8471</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_c" name="D-Mannose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 17369</p>
+ <p>KEGG: C00275</p>
+ <p>PUBCHEM: 3572</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_e" name="D-Mannose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>CHEBI: 17369</p>
+ <p>KEGG: C00275</p>
+ <p>PUBCHEM: 3572</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdptp_c" name="Guanosine-3-diphosphate-5-triphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C10H11N5O20P5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O20P5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04494</p>
+ <p>PUBCHEM: 7111</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fad_c" name="Flavin-adenine-dinucleotide-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H31N9O15P2</p>
+ <p>CHEBI: 16238</p>
+ <p>KEGG: C00016</p>
+ <p>PUBCHEM: 3318</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_p" name="Ferrichrome" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06228</p>
+ <p>PUBCHEM: 8471</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr160_p" name="1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H68O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H68O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_e" name="nickel" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>CHEBI: 28112</p>
+ <p>KEGG: C00291</p>
+ <p>PUBCHEM: 3585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_c" name="nickel" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>CHEBI: 28112</p>
+ <p>KEGG: C00291</p>
+ <p>PUBCHEM: 3585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr160_c" name="1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H68O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H68O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_p" name="nickel" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>CHEBI: 28112</p>
+ <p>KEGG: C00291</p>
+ <p>PUBCHEM: 3585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_p" name="Sulfate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>CHEBI: 16189</p>
+ <p>KEGG: C00059</p>
+ <p>PUBCHEM: 3359</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_p" name="Urea" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH4N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>CHEBI: 16199</p>
+ <p>KEGG: C00086</p>
+ <p>PUBCHEM: 3386</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ckdo_c" name="CMP-3-deoxy-D-manno-octulosonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H24N3O15P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H24N3O15P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04121</p>
+ <p>PUBCHEM: 6808</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_c" name="Mn2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>CHEBI: 18291</p>
+ <p>KEGG: C00034</p>
+ <p>PUBCHEM: 3336</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_e" name="Mn2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>CHEBI: 18291</p>
+ <p>KEGG: C00034</p>
+ <p>PUBCHEM: 3336</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal_e" name="N-Acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 28037</p>
+ <p>KEGG: C01132</p>
+ <p>PUBCHEM: 4363</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_c" name="Sulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>CHEBI: 16189</p>
+ <p>KEGG: C00059</p>
+ <p>PUBCHEM: 3359</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs2_c" name="23dhbzs2_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmbil_c" name="Hydroxymethylbilane" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H38N4O17">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H38N4O17</p>
+ <p>CHEBI: 16645</p>
+ <p>KEGG: C01024</p>
+ <p>PUBCHEM: 4269</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_e" name="Sulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>CHEBI: 16189</p>
+ <p>KEGG: C00059</p>
+ <p>PUBCHEM: 3359</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5p5p5p_p" name="three-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C120H186N24O63">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C120H186N24O63</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_p" name="Mn2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>CHEBI: 18291</p>
+ <p>KEGG: C00034</p>
+ <p>PUBCHEM: 3336</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal_p" name="N-Acetyl-D-galactosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 28037</p>
+ <p>KEGG: C01132</p>
+ <p>PUBCHEM: 4363</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glucys_c" name="gamma-L-Glutamyl-L-cysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O5S</p>
+ <p>CHEBI: 17515</p>
+ <p>KEGG: C00669</p>
+ <p>PUBCHEM: 3938</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hdcoa_c" name="S-3-Hydroxydecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H50N7O18P3S</p>
+ <p>CHEBI: 28325</p>
+ <p>KEGG: C05264</p>
+ <p>PUBCHEM: 7651</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_e" name="Urea" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH4N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>CHEBI: 16199</p>
+ <p>KEGG: C00086</p>
+ <p>PUBCHEM: 3386</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4mhetz_c" name="4-Methyl-5-2-hydroxyethyl-thiazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9NOS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9NOS</p>
+ <p>CHEBI: 17957</p>
+ <p>KEGG: C04294</p>
+ <p>PUBCHEM: 6954</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octeACP_c" name="cis-octadec-11-enoyl-acyl-carrier-protein-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdp4dh36ddglc_c" name="CDP-4-dehydro-3-6-dideoxy-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N3O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N3O14P2</p>
+ <p>CHEBI: 17817</p>
+ <p>KEGG: C04297</p>
+ <p>PUBCHEM: 6956</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4mop_c" name="4-Methyl-2-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O3</p>
+ <p>CHEBI: 48430</p>
+ <p>KEGG: C00233</p>
+ <p>PUBCHEM: 3532</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lpp_p" name="lipoprotein" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XC16H30O1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XC16H30O1</p>
+ <p>CHEBI: 6495</p>
+ <p>KEGG: C01834</p>
+ <p>PUBCHEM: 4953</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sarcs_c" name="Sarcosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>CHEBI: 15611</p>
+ <p>KEGG: C00213</p>
+ <p>PUBCHEM: 3513</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fcl__L_c" name="L-fuculose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>CHEBI: 17617</p>
+ <p>KEGG: C01721</p>
+ <p>PUBCHEM: 4858</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu5p_c" name="L-Glutamate-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8NO7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO7P</p>
+ <p>CHEBI: 17798</p>
+ <p>KEGG: C03287</p>
+ <p>PUBCHEM: 6144</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_c" name="O2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHEBI: 15379</p>
+ <p>KEGG: C00007</p>
+ <p>PUBCHEM: 3309</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_utp_c" name="UTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O15P3</p>
+ <p>CHEBI: 15713</p>
+ <p>KEGG: C00075</p>
+ <p>PUBCHEM: 3375</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dh4dglc_c" name="5-Dehydro-4-deoxy-D-glucarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O7</p>
+ <p>CHEBI: 42819</p>
+ <p>KEGG: C00679</p>
+ <p>PUBCHEM: 3948</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_e" name="O2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHEBI: 15379</p>
+ <p>KEGG: C00007</p>
+ <p>PUBCHEM: 3309</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn2_ST_p" name="clpn2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhsk_c" name="3-Dehydroshikimate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O5</p>
+ <p>CHEBI: 30918</p>
+ <p>KEGG: C02637</p>
+ <p>PUBCHEM: 5617</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_p" name="O2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>CHEBI: 15379</p>
+ <p>KEGG: C00007</p>
+ <p>PUBCHEM: 3309</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trptrna_c" name="L-Tryptophanyl-tRNA-Trp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H11N2OR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H11N2OR</p>
+ <p>CHEBI: 29159</p>
+ <p>KEGG: C03512</p>
+ <p>PUBCHEM: 6322</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acolipa_p" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C181H314N3O103P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_btnso_c" name="d-biotin-d-sulfoxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H15N2O4S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddecg3p_p" name="2-dodecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H30O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H30O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acolipa_e" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C181H314N3O103P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_u3aga_c" name="UDP-3-O-3-hydroxytetradecanoyl-N-acetylglucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H51N3O19P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C31H51N3O19P2</p>
+ <p>CHEBI: 28131</p>
+ <p>KEGG: C04738</p>
+ <p>PUBCHEM: 7309</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddecg3p_c" name="2-dodecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H30O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H30O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unagamuf_c" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C79H126N3O22P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H126N3O22P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unagamuf_p" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C79H126N3O22P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H126N3O22P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp9Oag_p" name="Undecaprenyl-diphosphate-O-antigene-9x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C271H450O160P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C271H450O160P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_p" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pran_c" name="N-5-Phospho-D-ribosyl-anthranilate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H13NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H13NO9P</p>
+ <p>CHEBI: 7091</p>
+ <p>KEGG: C04302</p>
+ <p>PUBCHEM: 6961</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_e" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt1p_c" name="Galactitol-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>CHEBI: 28663</p>
+ <p>KEGG: C06311</p>
+ <p>PUBCHEM: 8547</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_c" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_c" name="H2O" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>CHEBI: 15377</p>
+ <p>KEGG: C00001</p>
+ <p>PUBCHEM: 3303</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_p" name="Hg2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>CHEBI: 16793</p>
+ <p>KEGG: C00703</p>
+ <p>PUBCHEM: 3970</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_e" name="H2O" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>CHEBI: 15377</p>
+ <p>KEGG: C00001</p>
+ <p>PUBCHEM: 3303</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnasecys_c" name="tRNA-SeCys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe181_p" name="phosphatidylethanolamine-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H78N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H78N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_e" name="Nicotinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>CHEBI: 15940</p>
+ <p>KEGG: C00253</p>
+ <p>PUBCHEM: 3552</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_c" name="Nicotinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>CHEBI: 15940</p>
+ <p>KEGG: C00253</p>
+ <p>PUBCHEM: 3552</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_c" name="Hg2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>CHEBI: 16793</p>
+ <p>KEGG: C00703</p>
+ <p>PUBCHEM: 3970</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_p" name="H2O" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>CHEBI: 15377</p>
+ <p>KEGG: C00001</p>
+ <p>PUBCHEM: 3303</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_e" name="Hg2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>CHEBI: 16793</p>
+ <p>KEGG: C00703</p>
+ <p>PUBCHEM: 3970</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pe181_c" name="phosphatidylethanolamine-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H78N1O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C41H78N1O8P1</p>
+ <p>CHEBI: 16038</p>
+ <p>KEGG: C00350</p>
+ <p>PUBCHEM: 3643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prlp_c" name="5-5-phospho-1-deoxyribulos-1-ylamino-methylideneamino-1-5-phosphoribosyl-imidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H21N5O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H21N5O15P2</p>
+ <p>CHEBI: 27735</p>
+ <p>KEGG: C04916</p>
+ <p>PUBCHEM: 7464</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps161_c" name="phosphatidylserine-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H69N1O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H69N1O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ <p>PUBCHEM: 5698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp181_p" name="Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H77O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_p" name="Maltotriose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C18H32O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>CHEBI: 27931</p>
+ <p>KEGG: C01835</p>
+ <p>PUBCHEM: 4954</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pgp181_c" name="Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H77O13P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77O13P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03892</p>
+ <p>PUBCHEM: 6624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_e" name="Maltotriose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C18H32O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>CHEBI: 27931</p>
+ <p>KEGG: C01835</p>
+ <p>PUBCHEM: 4954</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbdrd_c" name="fused-thioldisulfide-interchange-protein-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: XH2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_c" name="Maltotriose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C18H32O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>CHEBI: 27931</p>
+ <p>KEGG: C01835</p>
+ <p>PUBCHEM: 4954</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_e" name="D-Glycerate-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHEBI: 17835</p>
+ <p>KEGG: C00631</p>
+ <p>PUBCHEM: 3904</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr180_p" name="1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H76O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H76O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_c" name="D-Glycerate-2-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHEBI: 17835</p>
+ <p>KEGG: C00631</p>
+ <p>PUBCHEM: 3904</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hhcoa_c" name="S-3-Hydroxyhexanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N7O18P3S</p>
+ <p>CHEBI: 28276</p>
+ <p>KEGG: C05268</p>
+ <p>PUBCHEM: 7655</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ggagicolipa_c" name="glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C163H281N2O89P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C163H281N2O89P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_p" name="tetradecenoate-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C87H139N7O23P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C87H139N7O23P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05897</p>
+ <p>PUBCHEM: 8185</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr180_c" name="1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H76O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C39H76O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_p" name="D-Glycerate-2-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>CHEBI: 17835</p>
+ <p>KEGG: C00631</p>
+ <p>PUBCHEM: 3904</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glycogen_c" name="glycogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O5</p>
+ <p>CHEBI: 28087</p>
+ <p>KEGG: C00182</p>
+ <p>PUBCHEM: 3482</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_e" name="tetradecenoate-n-C141" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_c" name="tetradecenoate-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_c" name="Glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHEBI: 15978</p>
+ <p>KEGG: C00093</p>
+ <p>PUBCHEM: 3393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_e" name="Glycerol-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHEBI: 15978</p>
+ <p>KEGG: C00093</p>
+ <p>PUBCHEM: 3393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_p" name="L-Threonine-O-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>CHEBI: 37525</p>
+ <p>KEGG: C12147</p>
+ <p>PUBCHEM: 14294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4mpetz_c" name="4-Methyl-5-2-phosphoethyl-thiazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8NO4PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8NO4PS</p>
+ <p>CHEBI: 17857</p>
+ <p>KEGG: C04327</p>
+ <p>PUBCHEM: 6980</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succoa_c" name="Succinyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H35N7O19P3S</p>
+ <p>CHEBI: 15380</p>
+ <p>KEGG: C00091</p>
+ <p>PUBCHEM: 3391</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddg6p_c" name="2-Dehydro-3-deoxy-D-gluconate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O9P</p>
+ <p>CHEBI: 15925</p>
+ <p>KEGG: C04442</p>
+ <p>PUBCHEM: 7071</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdtdec7eg_c" name="CDP-1-2-ditetradec-7-enoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C40H67N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H67N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ <p>PUBCHEM: 3567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_e" name="L-Threonine-O-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>CHEBI: 37525</p>
+ <p>KEGG: C12147</p>
+ <p>PUBCHEM: 14294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_p" name="Glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>CHEBI: 15978</p>
+ <p>KEGG: C00093</p>
+ <p>PUBCHEM: 3393</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_c" name="L-Threonine-O-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>CHEBI: 37525</p>
+ <p>KEGG: C12147</p>
+ <p>PUBCHEM: 14294</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_c" name="Shikimate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>CHEBI: 16119</p>
+ <p>KEGG: C00493</p>
+ <p>PUBCHEM: 3776</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1pyr5c_c" name="1-Pyrroline-5-carboxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6NO2</p>
+ <p>CHEBI: 371</p>
+ <p>KEGG: C03912</p>
+ <p>PUBCHEM: 6642</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_10fthf_c" name="10-Formyltetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H21N7O7</p>
+ <p>CHEBI: 15637</p>
+ <p>KEGG: C00234</p>
+ <p>PUBCHEM: 3533</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_c" name="L-Idonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 17796</p>
+ <p>KEGG: C00770</p>
+ <p>PUBCHEM: 4032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_p" name="Decanoate-n-C100" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>CHEBI: 30813</p>
+ <p>KEGG: C01571</p>
+ <p>PUBCHEM: 4728</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_e" name="L-Idonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 17796</p>
+ <p>KEGG: C00770</p>
+ <p>PUBCHEM: 4032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xu5p__D_c" name="D-Xylulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>CHEBI: 16332</p>
+ <p>KEGG: C00231</p>
+ <p>PUBCHEM: 3530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ooctACP_c" name="3-Oxooctanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05750</p>
+ <p>PUBCHEM: 8045</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt6p_c" name="D-Sorbitol-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13O9P</p>
+ <p>CHEBI: 17044</p>
+ <p>KEGG: C01096</p>
+ <p>PUBCHEM: 4331</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_e" name="Decanoate-n-C100" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>CHEBI: 30813</p>
+ <p>KEGG: C01571</p>
+ <p>PUBCHEM: 4728</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_p" name="L-Idonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 17796</p>
+ <p>KEGG: C00770</p>
+ <p>PUBCHEM: 4032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_c" name="Decanoate-n-C100" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>CHEBI: 30813</p>
+ <p>KEGG: C01571</p>
+ <p>PUBCHEM: 4728</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg140_c" name="acyl-phosphatidylglycerol-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C48H92O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H92O11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ribflv_c" name="Riboflavin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H20N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H20N4O6</p>
+ <p>CHEBI: 17015</p>
+ <p>KEGG: C00255</p>
+ <p>PUBCHEM: 3554</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rbflvrd_c" name="Reduced-riboflavin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H22N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H22N4O6</p>
+ <p>CHEBI: 8798</p>
+ <p>KEGG: C01007</p>
+ <p>PUBCHEM: 4252</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal__bD_p" name="beta-D-Galactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>CHEBI: 28260</p>
+ <p>KEGG: C01582</p>
+ <p>PUBCHEM: 4738</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_e" name="gamma-butyrobetaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>CHEBI: 1941</p>
+ <p>KEGG: C01181</p>
+ <p>PUBCHEM: 4408</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_t3c9palmeACP_c" name="trans-3-cis-9-palmitoleoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H47N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H47N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_p" name="Fe-enterobactin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>CHEBI: 28199</p>
+ <p>KEGG: C06230</p>
+ <p>PUBCHEM: 8473</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_e" name="Fe-enterobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>CHEBI: 28199</p>
+ <p>KEGG: C06230</p>
+ <p>PUBCHEM: 8473</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_c" name="Fe-enterobactin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>CHEBI: 28199</p>
+ <p>KEGG: C06230</p>
+ <p>PUBCHEM: 8473</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_p" name="gamma-butyrobetaine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>CHEBI: 1941</p>
+ <p>KEGG: C01181</p>
+ <p>PUBCHEM: 4408</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdprmn_c" name="dTDP-L-rhamnose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H24N2O15P2</p>
+ <p>CHEBI: 15774</p>
+ <p>KEGG: C03319</p>
+ <p>PUBCHEM: 6171</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_25aics_c" name="S-2-5-Amino-1-5-phospho-D-ribosyl-imidazole-4-carboxamidosuccinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C13H15N4O12P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H15N4O12P</p>
+ <p>CHEBI: 18319</p>
+ <p>KEGG: C04823</p>
+ <p>PUBCHEM: 7384</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kphphhlipa_c" name="kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C139H241N2O70P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C139H241N2O70P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp14Oag_p" name="Undecaprenyl-diphosphate-O-antigene-14x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C391H650O245P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C391H650O245P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uaccg_c" name="UDP-N-acetyl-3-O-1-carboxyvinyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H26N3O19P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H26N3O19P2</p>
+ <p>CHEBI: 16435</p>
+ <p>KEGG: C04631</p>
+ <p>PUBCHEM: 7220</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_e" name="Hydrogen-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>CHEBI: 16136</p>
+ <p>KEGG: C00283</p>
+ <p>PUBCHEM: 3578</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_p" name="KDO-2-lipid-IV-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06025</p>
+ <p>PUBCHEM: 8297</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_c" name="Hydrogen-sulfide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>CHEBI: 16136</p>
+ <p>KEGG: C00283</p>
+ <p>PUBCHEM: 3578</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn180_p" name="cardiolipin-tetraoctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C81H156O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C81H156O17P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ <p>PUBCHEM: 8259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_c" name="KDO-2-lipid-IV-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06025</p>
+ <p>PUBCHEM: 8297</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_p" name="Hydrogen-sulfide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>CHEBI: 16136</p>
+ <p>KEGG: C00283</p>
+ <p>PUBCHEM: 3578</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_e" name="KDO-2-lipid-IV-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C06025</p>
+ <p>PUBCHEM: 8297</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_e" name="Cu" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHEBI: 49552</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_scl_c" name="sirohydrochlorin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C42H39N4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H39N4O16</p>
+ <p>CHEBI: 18023</p>
+ <p>KEGG: C05778</p>
+ <p>PUBCHEM: 8073</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_c" name="Cu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHEBI: 49552</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdp4addg_c" name="dTDP-4-amino-4-6-dideoxy-D-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H26N3O14P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H26N3O14P2</p>
+ <p>CHEBI: 15952</p>
+ <p>KEGG: C04268</p>
+ <p>PUBCHEM: 6932</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lgt__S_c" name="R-S-Lactoylglutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H20N3O8S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C13H20N3O8S</p>
+ <p>CHEBI: 15694</p>
+ <p>KEGG: C03451</p>
+ <p>PUBCHEM: 6272</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asptrna_c" name="L-Aspartyl-tRNA-Asp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5NO3R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5NO3R</p>
+ <p>CHEBI: 29158</p>
+ <p>KEGG: C02984</p>
+ <p>PUBCHEM: 5893</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_p" name="Cu" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>CHEBI: 49552</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_myrsACP_c" name="Myristoyl-ACP-n-C140ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H47N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05761</p>
+ <p>PUBCHEM: 8056</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdpdtdecg_c" name="CDP-1-2-ditetradecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C40H71N3O15P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C40H71N3O15P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00269</p>
+ <p>PUBCHEM: 3567</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_p" name="Ferrioxamine-B-fe" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 123851</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mana_c" name="D-Mannonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 17767 33076</p>
+ <p>KEGG: C00514</p>
+ <p>PUBCHEM: 3797</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_manglyc_e" name="2-alpha-D-Mannosyl-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>CHEBI: 15847</p>
+ <p>KEGG: C11544</p>
+ <p>PUBCHEM: 13711</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hocoa_c" name="S-3-Hydroxyoctanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H46N7O18P3S</p>
+ <p>CHEBI: 28632</p>
+ <p>KEGG: C05266</p>
+ <p>PUBCHEM: 7653</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps140_c" name="phosphatidylserine-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H65N1O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H65N1O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ <p>PUBCHEM: 5698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_e" name="Ferrioxamine-B-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 123851</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_s_c" name="Sulfur" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: S</p>
+ <p>CHEBI: 17909</p>
+ <p>KEGG: C00087</p>
+ <p>PUBCHEM: 3387</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thf_c" name="5-6-7-8-Tetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H21N7O6</p>
+ <p>CHEBI: 15635</p>
+ <p>KEGG: C00101</p>
+ <p>PUBCHEM: 3401</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_c" name="Ferrioxamine-B-fe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 123851</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhm_c" name="1-6-anhydrous-N-Acetylmuramate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16NO7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16NO7</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ctbtcoa_c" name="crotonobetainyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H44N8O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C28H44N8O17P3S</p>
+ <p>CHEBI: 28684</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 591??6196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_manglyc_p" name="2-alpha-D-Mannosyl-D-glycerate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>CHEBI: 15847</p>
+ <p>KEGG: C11544</p>
+ <p>PUBCHEM: 13711</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_p" name="Xanthosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>CHEBI: 18107</p>
+ <p>KEGG: C01762</p>
+ <p>PUBCHEM: 4895</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg181_c" name="acyl-phosphatidylglycerol-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C60H110O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C60H110O11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hddcoa_c" name="S-3-Hydroxydodecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C33H54N7O18P3S</p>
+ <p>CHEBI: 27668</p>
+ <p>KEGG: C05262</p>
+ <p>PUBCHEM: 7649</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_c" name="ferroxamine-minus-Fe-3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3haACP_c" name="3R-3-Hydroxyacyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H27N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01271</p>
+ <p>PUBCHEM: 4490</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum_e" name="N-Acetylmuramate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02713</p>
+ <p>PUBCHEM: 5676</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_c" name="Phenylpropanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>CHEBI: 28631</p>
+ <p>KEGG: C05629</p>
+ <p>PUBCHEM: 7943</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_e" name="Phenylpropanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>CHEBI: 28631</p>
+ <p>KEGG: C05629</p>
+ <p>PUBCHEM: 7943</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_e" name="dUMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>CHEBI: 17622</p>
+ <p>KEGG: C00365</p>
+ <p>PUBCHEM: 3656</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_p" name="Phenylpropanoate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>CHEBI: 28631</p>
+ <p>KEGG: C05629</p>
+ <p>PUBCHEM: 7943</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdeACP_c" name="cis-hexadec-9-enoyl-acyl-carrier-protein-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_e" name="dxyl_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 28354</p>
+ <p>KEGG: C06257</p>
+ <p>PUBCHEM: 8496</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_c" name="1-deoxy-D-xylulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>CHEBI: 28354</p>
+ <p>KEGG: C06257</p>
+ <p>PUBCHEM: 8496</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sl26da_c" name="N-Succinyl-LL-2-6-diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H16N2O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H16N2O7</p>
+ <p>CHEBI: 17279</p>
+ <p>KEGG: C04421</p>
+ <p>PUBCHEM: 7053</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_p" name="dxyl_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 28354</p>
+ <p>KEGG: C06257</p>
+ <p>PUBCHEM: 8496</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_c" name="Thymine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>CHEBI: 17821</p>
+ <p>KEGG: C00178</p>
+ <p>PUBCHEM: 3478</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_c" name="N-Acetyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 17411</p>
+ <p>KEGG: C00140</p>
+ <p>PUBCHEM: 3440</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmanap_c" name="N-Acetyl-D-mannosamine-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHEBI: 28273</p>
+ <p>KEGG: C04257</p>
+ <p>PUBCHEM: 6922</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_p" name="dIMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>CHEBI: 28806</p>
+ <p>KEGG: C06196</p>
+ <p>PUBCHEM: 8446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ichor_c" name="Isochorismate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H8O6</p>
+ <p>CHEBI: 17582 29780</p>
+ <p>KEGG: C00885</p>
+ <p>PUBCHEM: 4141</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_p" name="Nitric-oxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>CHEBI: 16480</p>
+ <p>KEGG: C00533</p>
+ <p>PUBCHEM: 3815</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcmrs7eACP_c" name="R-3-hydroxy-cis-myristol-7-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_c" name="Ferrioxamine-G" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H49N6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_e" name="Ferrioxamine-G" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H49N6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_p" name="D-Ribose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 47013</p>
+ <p>KEGG: C00121</p>
+ <p>PUBCHEM: 3421</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_e" name="Nitric-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>CHEBI: 16480</p>
+ <p>KEGG: C00533</p>
+ <p>PUBCHEM: 3815</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_c" name="dIMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>CHEBI: 28806</p>
+ <p>KEGG: C06196</p>
+ <p>PUBCHEM: 8446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_e" name="dIMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>CHEBI: 28806</p>
+ <p>KEGG: C06196</p>
+ <p>PUBCHEM: 8446</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_c" name="Nitric-oxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>CHEBI: 16480</p>
+ <p>KEGG: C00533</p>
+ <p>PUBCHEM: 3815</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_p" name="Ferrioxamine-G" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H49N6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_e" name="D-Ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 47013</p>
+ <p>KEGG: C00121</p>
+ <p>PUBCHEM: 3421</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_c" name="D-Ribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>CHEBI: 47013</p>
+ <p>KEGG: C00121</p>
+ <p>PUBCHEM: 3421</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgdp_c" name="dGDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O10P2</p>
+ <p>CHEBI: 28862</p>
+ <p>KEGG: C00361</p>
+ <p>PUBCHEM: 3652</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sertrna__sec___c" name="L-Seryl-tRNA-Sec" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NO2R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO2R</p>
+ <p>CHEBI: 13170</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnamet_c" name="tRNA-Met" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29173</p>
+ <p>KEGG: C01647</p>
+ <p>PUBCHEM: 4796</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbip_c" name="Adenosyl-cobinamide-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C58H83CoN16O14P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C58H83CoN16O14P</p>
+ <p>CHEBI: 2481</p>
+ <p>KEGG: C06509</p>
+ <p>PUBCHEM: 8740</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_p" name="Thymine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>CHEBI: 17821</p>
+ <p>KEGG: C00178</p>
+ <p>PUBCHEM: 3478</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2oph_c" name="2-Octaprenylphenol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C46H70O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C46H70O</p>
+ <p>CHEBI: 40407</p>
+ <p>KEGG: C05810</p>
+ <p>PUBCHEM: 8105</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_c" name="Thiamin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>CHEBI: 18385</p>
+ <p>KEGG: C00378</p>
+ <p>PUBCHEM: 3668</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpdp_p" name="Undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C55H89O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O7P2</p>
+ <p>CHEBI: 17047</p>
+ <p>KEGG: C03543</p>
+ <p>PUBCHEM: 6347</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_e" name="Thiamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>CHEBI: 18385</p>
+ <p>KEGG: C00378</p>
+ <p>PUBCHEM: 3668</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_c" name="Fe2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHEBI: 18248</p>
+ <p>KEGG: C00023</p>
+ <p>PUBCHEM: 3325</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnahis_c" name="tRNA-His" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29178</p>
+ <p>KEGG: C01643</p>
+ <p>PUBCHEM: 4792</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_e" name="Fe2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHEBI: 18248</p>
+ <p>KEGG: C00023</p>
+ <p>PUBCHEM: 3325</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpdp_c" name="Undecaprenyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C55H89O7P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C55H89O7P2</p>
+ <p>CHEBI: 17047</p>
+ <p>KEGG: C03543</p>
+ <p>PUBCHEM: 6347</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_p" name="Thiamin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>CHEBI: 18385</p>
+ <p>KEGG: C00378</p>
+ <p>PUBCHEM: 3668</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_unagamu_c" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C71H113N2O18P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C71H113N2O18P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_p" name="Fe2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>CHEBI: 18248</p>
+ <p>KEGG: C00023</p>
+ <p>PUBCHEM: 3325</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_c" name="udcpo5_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tet_e" name="Tetrathionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O6S4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O6S4</p>
+ <p>CHEBI: 15226 16853</p>
+ <p>KEGG: C02084</p>
+ <p>PUBCHEM: 5169</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr120_c" name="1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H52O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H52O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_p" name="udcpo5_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp5Oag_p" name="Undecaprenyl-diphosphate-O-antigene-5x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C175H290O92P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C175H290O92P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12dgr120_p" name="1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H52O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H52O5</p>
+ <p>CHEBI: 17815</p>
+ <p>KEGG: C00641</p>
+ <p>PUBCHEM: 3914</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_c" name="L-Leucine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHEBI: 15603</p>
+ <p>KEGG: C00123</p>
+ <p>PUBCHEM: 3423</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_e" name="L-Leucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHEBI: 15603</p>
+ <p>KEGG: C00123</p>
+ <p>PUBCHEM: 3423</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2odec11eg3p_c" name="2-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H40O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H40O7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C03974</p>
+ <p>PUBCHEM: 6693</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg181_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H46O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_c" name="Adenosylcobalamin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>CHEBI: 18408</p>
+ <p>KEGG: C00194</p>
+ <p>PUBCHEM: 3494</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_e" name="Adenosylcobalamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>CHEBI: 18408</p>
+ <p>KEGG: C00194</p>
+ <p>PUBCHEM: 3494</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_p" name="L-Leucine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>CHEBI: 15603</p>
+ <p>KEGG: C00123</p>
+ <p>PUBCHEM: 3423</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg181_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H46O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_p" name="Adenosylcobalamin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>CHEBI: 18408</p>
+ <p>KEGG: C00194</p>
+ <p>PUBCHEM: 3494</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_c" name="Deoxyguanosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHEBI: 17172</p>
+ <p>KEGG: C00330</p>
+ <p>PUBCHEM: 3624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppbng_c" name="Porphobilinogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O4</p>
+ <p>CHEBI: 17381</p>
+ <p>KEGG: C00931</p>
+ <p>PUBCHEM: 4184</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glntrna_c" name="L-Glutaminyl-tRNA-Gln" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H9N2O2R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9N2O2R</p>
+ <p>CHEBI: 29166</p>
+ <p>KEGG: C02282</p>
+ <p>PUBCHEM: 5339</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_e" name="Deoxyguanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHEBI: 17172</p>
+ <p>KEGG: C00330</p>
+ <p>PUBCHEM: 3624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_c" name="Dodecanoate-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>CHEBI: 30805</p>
+ <p>KEGG: C02679</p>
+ <p>PUBCHEM: 5649</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_e" name="Dodecanoate-n-C120" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>CHEBI: 30805</p>
+ <p>KEGG: C02679</p>
+ <p>PUBCHEM: 5649</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sheme_c" name="Siroheme" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C42H36FeN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H36FeN4O16</p>
+ <p>CHEBI: 28599</p>
+ <p>KEGG: C00748</p>
+ <p>PUBCHEM: 4010</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_p" name="Deoxyguanosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>CHEBI: 17172</p>
+ <p>KEGG: C00330</p>
+ <p>PUBCHEM: 3624</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_p" name="Dodecanoate-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>CHEBI: 30805</p>
+ <p>KEGG: C02679</p>
+ <p>PUBCHEM: 5649</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_e" name="Deoxyadenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHEBI: 17256</p>
+ <p>KEGG: C00559</p>
+ <p>PUBCHEM: 3839</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_histd_c" name="L-Histidinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N3O</p>
+ <p>CHEBI: 16255</p>
+ <p>KEGG: C00860</p>
+ <p>PUBCHEM: 4117</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3p_c" name="Glyceraldehyde-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O6P</p>
+ <p>CHEBI: 17138</p>
+ <p>KEGG: C00661</p>
+ <p>PUBCHEM: 3930</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_p" name="Shikimate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>CHEBI: 16119</p>
+ <p>KEGG: C00493</p>
+ <p>PUBCHEM: 3776</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_c" name="2-Dehydro-3-deoxy-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHEBI: 17032</p>
+ <p>KEGG: C00204</p>
+ <p>PUBCHEM: 3504</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_e" name="2-Dehydro-3-deoxy-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHEBI: 17032</p>
+ <p>KEGG: C00204</p>
+ <p>PUBCHEM: 3504</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hqn_c" name="Hydroquinone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H6O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O2</p>
+ <p>CHEBI: 17594</p>
+ <p>KEGG: C00530</p>
+ <p>PUBCHEM: 3812</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe180_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H48NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H48NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ <p>PUBCHEM: 7069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_p" name="2-Dehydro-3-deoxy-D-gluconate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>CHEBI: 17032</p>
+ <p>KEGG: C00204</p>
+ <p>PUBCHEM: 3504</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyceryl_prolpp_c" name="glyceryl_prolpp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_e" name="Thymidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H14N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>CHEBI: 17748</p>
+ <p>KEGG: C00214</p>
+ <p>PUBCHEM: 3514</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_c" name="Thymidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H14N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>CHEBI: 17748</p>
+ <p>KEGG: C00214</p>
+ <p>PUBCHEM: 3514</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_grxox_c" name="glutaredoxin-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_p" name="Thymidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H14N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>CHEBI: 17748</p>
+ <p>KEGG: C00214</p>
+ <p>PUBCHEM: 3514</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_p" name="4-Hydroxyphenylacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>CHEBI: 18101</p>
+ <p>KEGG: C00642</p>
+ <p>PUBCHEM: 3915</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glutrna_c" name="L-Glutamyl-tRNA-Glu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H7NO3R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7NO3R</p>
+ <p>CHEBI: 29157</p>
+ <p>KEGG: C02987</p>
+ <p>PUBCHEM: 5896</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmnman_c" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C73H120O21P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C73H120O21P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_c" name="4-Hydroxyphenylacetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>CHEBI: 18101</p>
+ <p>KEGG: C00642</p>
+ <p>PUBCHEM: 3915</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udp_c" name="UDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O12P2</p>
+ <p>CHEBI: 17659</p>
+ <p>KEGG: C00015</p>
+ <p>PUBCHEM: 3317</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_e" name="4-Hydroxyphenylacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>CHEBI: 18101</p>
+ <p>KEGG: C00642</p>
+ <p>PUBCHEM: 3915</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butACP_c" name="Butyryl-ACP-n-C40ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H27N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05745</p>
+ <p>PUBCHEM: 8040</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_p" name="salchs2fe_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fgam_c" name="N2-Formyl-N1-5-phospho-D-ribosyl-glycinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H13N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O9P</p>
+ <p>CHEBI: 18272</p>
+ <p>KEGG: C04376</p>
+ <p>PUBCHEM: 7017</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_e" name="salchs2fe_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_c" name="salchs2fe_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>CHEBI: NA</p>
+ <p>KEGG: NA</p>
+ <p>PUBCHEM: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_e" name="Maltohexaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01936</p>
+ <p>PUBCHEM: 5041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_c" name="Maltohexaose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01936</p>
+ <p>PUBCHEM: 5041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa160_p" name="1-2-dihexadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H67O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H67O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_quln_c" name="Quinolinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H3NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H3NO4</p>
+ <p>CHEBI: 16675</p>
+ <p>KEGG: C03722</p>
+ <p>PUBCHEM: 6487</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_p" name="Maltohexaose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C01936</p>
+ <p>PUBCHEM: 5041</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa160_c" name="1-2-dihexadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H67O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H67O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg180_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H48O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H48O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp10Oag_p" name="Undecaprenyl-diphosphate-O-antigene-10x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C295H490O177P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C295H490O177P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_p" name="L-Methionine-Sulfoxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHEBI: 17016</p>
+ <p>KEGG: C02989</p>
+ <p>PUBCHEM: 5898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_p" name="ferroxamine-minus-Fe-3" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot5p_c" name="Orotidine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H10N2O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10N2O11P</p>
+ <p>CHEBI: 15842</p>
+ <p>KEGG: C01103</p>
+ <p>PUBCHEM: 4337</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein4px4p_p" name="two-disacharide-linked-murein-units-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H112N14O39">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C74H112N14O39</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ssaltpp_c" name="Succinate-semialdehyde-thiamin-diphosphate-anion" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C16H21N4O10P2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H21N4O10P2S</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05816</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_c" name="L-Methionine-Sulfoxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHEBI: 17016</p>
+ <p>KEGG: C02989</p>
+ <p>PUBCHEM: 5898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_e" name="ferroxamine-minus-Fe-3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_p" name="coprogen" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_e" name="L-Methionine-Sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>CHEBI: 17016</p>
+ <p>KEGG: C02989</p>
+ <p>PUBCHEM: 5898</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but2eACP_c" name="But-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04246</p>
+ <p>PUBCHEM: 6911</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tdcoa_c" name="Tetradecanoyl-CoA-n-C140CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H58N7O17P3S</p>
+ <p>CHEBI: 15532</p>
+ <p>KEGG: C02593</p>
+ <p>PUBCHEM: 5585</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_e" name="N-Acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>CHEBI: 17411</p>
+ <p>KEGG: C00140</p>
+ <p>PUBCHEM: 3440</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_q8h2_c" name="Ubiquinol-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C49H76O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H76O4</p>
+ <p>CHEBI: 17976</p>
+ <p>KEGG: C00390</p>
+ <p>PUBCHEM: 3680</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpe141_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H38NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H38NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04438</p>
+ <p>PUBCHEM: 7069</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_bglycogen_c" name="branching-glycogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcdp_c" name="dCDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O10P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00705</p>
+ <p>PUBCHEM: 3972</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaphe_c" name="tRNA-Phe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29184</p>
+ <p>KEGG: C01648</p>
+ <p>PUBCHEM: 4797</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhdp_c" name="2-3-Dihydrodipicolinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H5NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5NO4</p>
+ <p>CHEBI: 18042</p>
+ <p>KEGG: C03340</p>
+ <p>PUBCHEM: 6183</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_e" name="L-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHEBI: 17561</p>
+ <p>KEGG: C00097</p>
+ <p>PUBCHEM: 3397</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mcit_c" name="2-Methylcitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H7O7</p>
+ <p>CHEBI: 10860 30836</p>
+ <p>KEGG: C02225</p>
+ <p>PUBCHEM: 5290</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_c" name="gamma-butyrobetaine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>CHEBI: 1941</p>
+ <p>KEGG: C01181</p>
+ <p>PUBCHEM: 4408</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_p" name="L-Cysteine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>CHEBI: 17561</p>
+ <p>KEGG: C00097</p>
+ <p>PUBCHEM: 3397</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_p" name="Deoxyadenosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHEBI: 17256</p>
+ <p>KEGG: C00559</p>
+ <p>PUBCHEM: 3839</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppcoa_c" name="Propanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H36N7O17P3S</p>
+ <p>CHEBI: 15539</p>
+ <p>KEGG: C00100</p>
+ <p>PUBCHEM: 3400</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_p" name="Fe-III-hydoxamate-unloaded" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6pgl_c" name="6-phospho-D-glucono-1-5-lactone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O9P</p>
+ <p>CHEBI: 16938</p>
+ <p>KEGG: C01236</p>
+ <p>PUBCHEM: 4457</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_p" name="Glycine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H5NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>CHEBI: 15428</p>
+ <p>KEGG: C00037</p>
+ <p>PUBCHEM: 3339</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_c" name="Fe-III-hydoxamate-unloaded" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_e" name="Fe-III-hydoxamate-unloaded" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_e" name="Glycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H5NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>CHEBI: 15428</p>
+ <p>KEGG: C00037</p>
+ <p>PUBCHEM: 3339</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg140_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H40O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H40O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_c" name="Glycine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H5NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>CHEBI: 15428</p>
+ <p>KEGG: C00037</p>
+ <p>PUBCHEM: 3339</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lald__D_c" name="D-Lactaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>CHEBI: 17167</p>
+ <p>KEGG: C00937</p>
+ <p>PUBCHEM: 4189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_p" name="D-Galactonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 12931 16534</p>
+ <p>KEGG: C00880</p>
+ <p>PUBCHEM: 4136</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2mcacn_c" name="cis-2-Methylaconitate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H5O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O6</p>
+ <p>CHEBI: 16717</p>
+ <p>KEGG: C04225</p>
+ <p>PUBCHEM: 6896</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dhap_c" name="Dihydroxyacetone-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O6P</p>
+ <p>CHEBI: 16108</p>
+ <p>KEGG: C00111</p>
+ <p>PUBCHEM: 3411</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_c" name="D-Galactonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 12931 16534</p>
+ <p>KEGG: C00880</p>
+ <p>PUBCHEM: 4136</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_e" name="D-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>CHEBI: 12931 16534</p>
+ <p>KEGG: C00880</p>
+ <p>PUBCHEM: 4136</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcddec5eACP_c" name="R-3-hydroxy-cis-dodec-5-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H41N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lald__L_c" name="L-Lactaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O2</p>
+ <p>CHEBI: 18041</p>
+ <p>KEGG: C00424</p>
+ <p>PUBCHEM: 3714</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6pgc_c" name="6-Phospho-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O10P</p>
+ <p>CHEBI: 48928</p>
+ <p>KEGG: C00345</p>
+ <p>PUBCHEM: 3638</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucsal_c" name="Succinic-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>CHEBI: 16265</p>
+ <p>KEGG: C00232</p>
+ <p>PUBCHEM: 3531</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_murein5px4p_p" name="two-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C77H117N15O40">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C77H117N15O40</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hbz_c" name="4-Hydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H5O3</p>
+ <p>CHEBI: 30763</p>
+ <p>KEGG: C00156</p>
+ <p>PUBCHEM: 3456</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthp_c" name="Maltoheptaose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H72O36">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H72O36</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 3037125??8462</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cdec3eACP_c" name="cis-dec-3-enoyl-acyl-carrier-protein-n-C101" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H37N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_p" name="Chloride" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>CHEBI: 17996</p>
+ <p>KEGG: C00115</p>
+ <p>PUBCHEM: 3415</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dhp_c" name="2-Dehydropantoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O4</p>
+ <p>CHEBI: 11561 17094</p>
+ <p>KEGG: C00966</p>
+ <p>PUBCHEM: 4217</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgtp_c" name="dGTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O13P3</p>
+ <p>CHEBI: 16497</p>
+ <p>KEGG: C00286</p>
+ <p>PUBCHEM: 3581</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdpgalrmnmanabe_p" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C79H130O24P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C79H130O24P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_appp_c" name="D-1-Aminopropan-2-ol-O-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H9NO4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO4P</p>
+ <p>CHEBI: 28390</p>
+ <p>KEGG: C04122</p>
+ <p>PUBCHEM: 6809</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa20Oag_e" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C656H1103N2O440P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C656H1103N2O440P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ps181_c" name="phosphatidylserine-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H77N1O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H77N1O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C02737</p>
+ <p>PUBCHEM: 5698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa20Oag_p" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C656H1103N2O440P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C656H1103N2O440P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_e" name="Chloride" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>CHEBI: 17996</p>
+ <p>KEGG: C00115</p>
+ <p>PUBCHEM: 3415</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_c" name="L-Aspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>CHEBI: 17053</p>
+ <p>KEGG: C00049</p>
+ <p>PUBCHEM: 3351</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_e" name="L-Aspartate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>CHEBI: 17053</p>
+ <p>KEGG: C00049</p>
+ <p>PUBCHEM: 3351</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tagdp__D_c" name="D-Tagatose-1-6-biphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H10O12P2</p>
+ <p>CHEBI: 4250</p>
+ <p>KEGG: C03785</p>
+ <p>PUBCHEM: 6535</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1agpg181_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H46O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H46O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_p" name="L-Aspartate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>CHEBI: 17053</p>
+ <p>KEGG: C00049</p>
+ <p>PUBCHEM: 3351</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx5p_c" name="Pyridoxal-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8NO6P</p>
+ <p>CHEBI: 18405</p>
+ <p>KEGG: C00018</p>
+ <p>PUBCHEM: 3320</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sl2a6o_c" name="N-Succinyl-2-L-amino-6-oxoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H12NO8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12NO8</p>
+ <p>CHEBI: 35266</p>
+ <p>KEGG: C04462</p>
+ <p>PUBCHEM: 7087</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4ppcys_c" name="N--R-4-Phosphopantothenoyl-L-cysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H20N2O9PS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H20N2O9PS</p>
+ <p>CHEBI: 15769</p>
+ <p>KEGG: C04352</p>
+ <p>PUBCHEM: 7001</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_6hmhptpp_c" name="6-hydroxymethyl-dihydropterin-pyrophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H8N5O8P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8N5O8P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hemeO_c" name="Heme-O" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C49H56FeN4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C49H56FeN4O5</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C15672</p>
+ <p>PUBCHEM: 47204998</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hdecACP_c" name="R-3-Hydroxydecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H39N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C04619</p>
+ <p>PUBCHEM: 7209</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odecg3p_p" name="1-octadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H41O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H41O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucr_p" name="Sucrose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 17992</p>
+ <p>KEGG: C00089</p>
+ <p>PUBCHEM: 3389</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_datp_c" name="dATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O12P3</p>
+ <p>CHEBI: 16284</p>
+ <p>KEGG: C00131</p>
+ <p>PUBCHEM: 3431</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_1odecg3p_c" name="1-octadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H41O7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H41O7P1</p>
+ <p>CHEBI: 16975</p>
+ <p>KEGG: C00681</p>
+ <p>PUBCHEM: 3950</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucr_e" name="Sucrose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>CHEBI: 17992</p>
+ <p>KEGG: C00089</p>
+ <p>PUBCHEM: 3389</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3sala_c" name="3-Sulfino-L-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5NO4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5NO4S</p>
+ <p>CHEBI: 16345</p>
+ <p>KEGG: C00606</p>
+ <p>PUBCHEM: 3881</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa120_p" name="1-2-didodecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H51O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhgulnp_c" name="3-keto-L-gulonate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C14899</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pa120_c" name="1-2-didodecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H51O8P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H51O8P1</p>
+ <p>CHEBI: 16337</p>
+ <p>KEGG: C00416</p>
+ <p>PUBCHEM: 3706</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3dhguln_c" name="3-Dehydro-L-gulonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>CHEBI: 16142</p>
+ <p>KEGG: C00618</p>
+ <p>PUBCHEM: 3892</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hhexACP_c" name="R-3-Hydroxyhexanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H31N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05747</p>
+ <p>PUBCHEM: 8042</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcvac11eACP_c" name="R-3-hydroxy-cis-vacc-11-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O9PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H53N2O9PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2kmb_c" name="2-keto-4-methylthiobutyrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H7O3S</p>
+ <p>CHEBI: 17275</p>
+ <p>KEGG: C01180</p>
+ <p>PUBCHEM: 5611</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtdpglu_c" name="dTDPglucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O16P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H24N2O16P2</p>
+ <p>CHEBI: 15700</p>
+ <p>KEGG: C00842</p>
+ <p>PUBCHEM: 4099</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg141_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H38O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpg141_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H38O9P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H38O9P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_e" name="L-Histidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>CHEBI: 15971</p>
+ <p>KEGG: C00135</p>
+ <p>PUBCHEM: 3435</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddcaACP_c" name="Dodecanoyl-ACP-n-C120ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C23H43N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05223</p>
+ <p>PUBCHEM: 7620</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_clpn140_p" name="cardiolipin-tetratetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C65H124O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C65H124O17P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05980</p>
+ <p>PUBCHEM: 8259</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_c" name="Oxidized-glutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>CHEBI: 17858</p>
+ <p>KEGG: C00127</p>
+ <p>PUBCHEM: 3427</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydam_c" name="Pyridoxamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H13N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N2O2</p>
+ <p>CHEBI: 16410</p>
+ <p>KEGG: C00534</p>
+ <p>PUBCHEM: 3816</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_e" name="IMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>CHEBI: 17202</p>
+ <p>KEGG: C00130</p>
+ <p>PUBCHEM: 3430</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhm4p_c" name="1-6-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C29H44N6O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C29H44N6O15</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppoh_c" name="1-Propanol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O1</p>
+ <p>CHEBI: 28831</p>
+ <p>KEGG: C05979</p>
+ <p>PUBCHEM: 8258</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_e" name="ferric-2-3-dihydroxybenzoylserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_c" name="ferric-2-3-dihydroxybenzoylserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe160_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H44NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_prbatp_c" name="1-5-Phosphoribosyl-ATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C15H19N5O20P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N5O20P4</p>
+ <p>CHEBI: 18263</p>
+ <p>KEGG: C02739</p>
+ <p>PUBCHEM: 5699</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg160_p" name="Phosphatidylglycerol-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H74O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H74O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hx2coa_c" name="trans-Hex-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H40N7O17P3S</p>
+ <p>CHEBI: 28706</p>
+ <p>KEGG: C05271</p>
+ <p>PUBCHEM: 7658</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2agpe160_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H44NO7P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C21H44NO7P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05973</p>
+ <p>PUBCHEM: 8253</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_p" name="ferric-2-3-dihydroxybenzoylserine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ametam_c" name="S-Adenosylmethioninamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H24N6O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H24N6O3S</p>
+ <p>CHEBI: 15625</p>
+ <p>KEGG: C01137</p>
+ <p>PUBCHEM: 4368</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pg160_c" name="Phosphatidylglycerol-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H74O10P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C38H74O10P1</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00344</p>
+ <p>PUBCHEM: 3637</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_c" name="Glycolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>CHEBI: 17497</p>
+ <p>KEGG: C00160</p>
+ <p>PUBCHEM: 3460</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_e" name="Glycolate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>CHEBI: 17497</p>
+ <p>KEGG: C00160</p>
+ <p>PUBCHEM: 3460</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_e" name="2-Aminoethylphosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>CHEBI: 15573</p>
+ <p>KEGG: C03557</p>
+ <p>PUBCHEM: 6353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_c" name="2-Aminoethylphosphonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>CHEBI: 15573</p>
+ <p>KEGG: C03557</p>
+ <p>PUBCHEM: 6353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_p" name="Glycolate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>CHEBI: 17497</p>
+ <p>KEGG: C00160</p>
+ <p>PUBCHEM: 3460</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_p" name="2-Aminoethylphosphonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>CHEBI: 15573</p>
+ <p>KEGG: C03557</p>
+ <p>PUBCHEM: 6353</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_c" name="2-Oxoglutarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>CHEBI: 30915</p>
+ <p>KEGG: C00026</p>
+ <p>PUBCHEM: 3328</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm4p_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H57N7O20">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H57N7O20</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_e" name="2-Oxoglutarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>CHEBI: 30915</p>
+ <p>KEGG: C00026</p>
+ <p>PUBCHEM: 3328</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2omhmbl_c" name="2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1-4-benzoquinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H74O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H74O4</p>
+ <p>CHEBI: 27688</p>
+ <p>KEGG: C05815</p>
+ <p>PUBCHEM: 8110</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_c" name="Deoxyadenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>CHEBI: 17256</p>
+ <p>KEGG: C00559</p>
+ <p>PUBCHEM: 3839</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_p" name="2-Oxoglutarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>CHEBI: 30915</p>
+ <p>KEGG: C00026</p>
+ <p>PUBCHEM: 3328</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm4p_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H57N7O20">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H57N7O20</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_toct2eACP_c" name="trans-Oct-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O8PRS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H33N2O8PRS</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05751</p>
+ <p>PUBCHEM: 8046</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_p" name="1-4-alpha-D-glucan" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00912</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3c2hmp_c" name="3-Carboxy-2-hydroxy-4-methylpentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H10O5</p>
+ <p>CHEBI: 35121</p>
+ <p>KEGG: C04411</p>
+ <p>PUBCHEM: 7045</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enlipa_e" name="phosphoethanolamine-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C112H202N3O42P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnatyr_c" name="tRNA-Tyr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29182</p>
+ <p>KEGG: C00787</p>
+ <p>PUBCHEM: 4045</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_c" name="1-4-alpha-D-glucan" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00912</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_e" name="1-4-alpha-D-glucan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C00912</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enlipa_p" name="phosphoethanolamine-KDO-2-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C112H202N3O42P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hacolipa_e" name="hepta-acylated-core-oligosaccharide-lipid-A-E-coli" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C192H333N2O101P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C192H333N2O101P4</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcdp8Oag_p" name="Undecaprenyl-diphosphate-O-antigene-8x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C247H410O143P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C247H410O143P2</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucbz_c" name="o-Succinylbenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H8O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H8O5</p>
+ <p>CHEBI: 18325</p>
+ <p>KEGG: C02730</p>
+ <p>PUBCHEM: 5692</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_apg120_c" name="acyl-phosphatidylglycerol-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H80O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H80O11P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam6p_c" name="N-Acetyl-D-glucosamine-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>CHEBI: 15784</p>
+ <p>KEGG: C00357</p>
+ <p>PUBCHEM: 3650</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_p" name="D-Methionine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>CHEBI: 16867</p>
+ <p>KEGG: C00855</p>
+ <p>PUBCHEM: 4112</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_e" name="D-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>CHEBI: 16867</p>
+ <p>KEGG: C00855</p>
+ <p>PUBCHEM: 4112</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_c" name="D-Methionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>CHEBI: 16867</p>
+ <p>KEGG: C00855</p>
+ <p>PUBCHEM: 4112</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_e" name="Nitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>CHEBI: 48107</p>
+ <p>KEGG: C00244</p>
+ <p>PUBCHEM: 3543</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_iletrna_c" name="L-Isoleucyl-tRNA-Ile" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12NOR">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12NOR</p>
+ <p>CHEBI: 29160</p>
+ <p>KEGG: C03127</p>
+ <p>PUBCHEM: 6020</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3cmp_p" name="3-cmp" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05822</p>
+ <p>PUBCHEM: 8117</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5c2o3ed_c" name="5-Carboxy-2-oxohept-3-enedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H5O7</p>
+ <p>CHEBI: 15924</p>
+ <p>KEGG: C04052</p>
+ <p>PUBCHEM: 6753</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trnaser_c" name="tRNA-Ser" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: R</p>
+ <p>CHEBI: 29179</p>
+ <p>KEGG: C01650</p>
+ <p>PUBCHEM: 4799</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3cmp_e" name="3-cmp" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C05822</p>
+ <p>PUBCHEM: 8117</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n8aspmd_c" name="N8-Acetylspermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H23N3O</p>
+ <p>CHEBI: 27911</p>
+ <p>KEGG: C01029</p>
+ <p>PUBCHEM: 4273</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dsbgox_p" name="periplasmic-disulfide-isomerasethiol-disulphide-oxidase-oxidized" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: X</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: 0</p>
+ <p>PUBCHEM: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgalfur_c" name="UDP-D-galacto-1-4-furanose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>CHEBI: 18251</p>
+ <p>KEGG: C03733</p>
+ <p>PUBCHEM: 6496</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucgsa_c" name="N2-Succinyl-L-glutamate-5-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO6</p>
+ <p>CHEBI: 27657</p>
+ <p>KEGG: C05932</p>
+ <p>PUBCHEM: 8220</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acorn_c" name="N2-Acetyl-L-ornithine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O3</p>
+ <p>CHEBI: 16543</p>
+ <p>KEGG: C00437</p>
+ <p>PUBCHEM: 3726</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_codscl6b_c" name="Cobalt-precorrin-6b" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H47CoN4O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C44H47CoN4O16</p>
+ <p>CHEBI: 0</p>
+ <p>KEGG: C11543</p>
+ <p>PUBCHEM: 13710</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2dmmq8_c" name="2-Demethylmenaquinone-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C50H70O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C50H70O2</p>
+ <p>CHEBI: 28192</p>
+ <p>KEGG: C05818</p>
+ <p>PUBCHEM: 8113</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dctp_c" name="dCTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O13P3</p>
+ <p>CHEBI: 16311</p>
+ <p>KEGG: C00458</p>
+ <p>PUBCHEM: 3742</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_p" name="O-Acetyl-L-serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>CHEBI: 17981</p>
+ <p>KEGG: C00979</p>
+ <p>PUBCHEM: 4228</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdd2coa_c" name="trans-Hexadec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C37H60N7O17P3S</p>
+ <p>CHEBI: 28935</p>
+ <p>KEGG: C05272</p>
+ <p>PUBCHEM: 7659</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hba_c_boundary" name="4-Hydroxy-benzyl-alcohol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H8O2</p>
+ <p>PUBCHEM: 125??3480</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 30746</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5drib_c_boundary" name="5-deoxyribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 3449</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 30797</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hmfurn_c_boundary" name="4-hydroxy-5-methyl-3-2H-furanone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6O3</p>
+ <p>PUBCHEM: 4564493??3441</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 11851 16530</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oxam_c_boundary" name="Oxamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2NO3</p>
+ <p>PUBCHEM: 4622</p>
+ <p>KEGG: C01444</p>
+ <p>CHEBI: 18058</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chitob_e_boundary" name="Chitobiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C16H28N2O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H28N2O11</p>
+ <p>PUBCHEM: 4818</p>
+ <p>KEGG: C01674</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydxn_e_boundary" name="Pyridoxine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H11NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H11NO3</p>
+ <p>PUBCHEM: 3608</p>
+ <p>KEGG: C00314</p>
+ <p>CHEBI: 16709</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pydx_e_boundary" name="Pyridoxal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H9NO3</p>
+ <p>PUBCHEM: 3549</p>
+ <p>KEGG: C00250</p>
+ <p>CHEBI: 17310</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__R_e_boundary" name="R-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5836</p>
+ <p>KEGG: C02912</p>
+ <p>CHEBI: 28972</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_12ppd__S_e_boundary" name="S-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O2</p>
+ <p>PUBCHEM: 5840</p>
+ <p>KEGG: C02917</p>
+ <p>CHEBI: 29002</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_14glucan_e_boundary" name="1-4-alpha-D-glucan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: C00912</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_15dap_e_boundary" name="1-5-Diaminopentane" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N2</p>
+ <p>PUBCHEM: 4816</p>
+ <p>KEGG: C01672</p>
+ <p>CHEBI: 18127</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23camp_e_boundary" name="2-3-Cyclic-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O6P</p>
+ <p>PUBCHEM: 5400</p>
+ <p>KEGG: C02353</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23ccmp_e_boundary" name="2-3-Cyclic-CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H11N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N3O7P</p>
+ <p>PUBCHEM: 5401</p>
+ <p>KEGG: C02354</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cgmp_e_boundary" name="2-3-Cyclic-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N5O7P</p>
+ <p>PUBCHEM: 8444</p>
+ <p>KEGG: C06194</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23cump_e_boundary" name="2-3-Cyclic-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10N2O8P</p>
+ <p>PUBCHEM: 5402</p>
+ <p>KEGG: C02355</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dappa_e_boundary" name="2-3-diaminopropionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9N2O2</p>
+ <p>PUBCHEM: 8629</p>
+ <p>KEGG: C06393</p>
+ <p>CHEBI: 18383</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_26dap__M_e_boundary" name="meso-2-6-Diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H14N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H14N2O4</p>
+ <p>PUBCHEM: 3949</p>
+ <p>KEGG: C00680</p>
+ <p>CHEBI: 16488 30308</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2ddglcn_e_boundary" name="2-Dehydro-3-deoxy-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O6</p>
+ <p>PUBCHEM: 3504</p>
+ <p>KEGG: C00204</p>
+ <p>CHEBI: 17032</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_34dhpac_e_boundary" name="3-4-Dihydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H8O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O3</p>
+ <p>PUBCHEM: 6744</p>
+ <p>KEGG: C04043</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3amp_e_boundary" name="3-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 4566</p>
+ <p>KEGG: C01367</p>
+ <p>CHEBI: 28931</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3cmp_e_boundary" name="3-cmp" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 8117</p>
+ <p>KEGG: C05822</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3gmp_e_boundary" name="3-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 8443</p>
+ <p>KEGG: C06193</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hcinnm_e_boundary" name="3-hydroxycinnamic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H7O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3hpppn_e_boundary" name="3-3-hydroxy-phenyl-propionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3ump_e_boundary" name="3-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 4567</p>
+ <p>KEGG: C01368</p>
+ <p>CHEBI: 28895</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abut_e_boundary" name="4-Aminobutanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO2</p>
+ <p>PUBCHEM: 3628</p>
+ <p>KEGG: C00334</p>
+ <p>CHEBI: 16865</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpacd_e_boundary" name="4-Hydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H8O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O2</p>
+ <p>PUBCHEM: 6521</p>
+ <p>KEGG: C03765</p>
+ <p>CHEBI: 15621</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_5dglcn_e_boundary" name="5-Dehydro-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4301</p>
+ <p>KEGG: C01062</p>
+ <p>CHEBI: 17426</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdapDala_e_boundary" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H30N5O9</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_LalaDgluMdap_e_boundary" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H25N4O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ac_e_boundary" name="Acetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O2</p>
+ <p>PUBCHEM: 3335</p>
+ <p>KEGG: C00033</p>
+ <p>CHEBI: 15366</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acac_e_boundary" name="Acetoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5O3</p>
+ <p>PUBCHEM: 3464</p>
+ <p>KEGG: C00164</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acald_e_boundary" name="Acetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H4O</p>
+ <p>PUBCHEM: 3384</p>
+ <p>KEGG: C00084</p>
+ <p>CHEBI: 15343</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal1p_e_boundary" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgal_e_boundary" name="N-Acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 4363</p>
+ <p>KEGG: C01132</p>
+ <p>CHEBI: 28037</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam1p_e_boundary" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H14NO9P</p>
+ <p>PUBCHEM: 6921</p>
+ <p>KEGG: C04256</p>
+ <p>CHEBI: 7125</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acgam_e_boundary" name="N-Acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3440</p>
+ <p>KEGG: C00140</p>
+ <p>CHEBI: 17411</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmana_e_boundary" name="N-Acetyl-D-mannosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H15NO6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15NO6</p>
+ <p>PUBCHEM: 3918</p>
+ <p>KEGG: C00645</p>
+ <p>CHEBI: 17122</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acmum_e_boundary" name="N-Acetylmuramate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO8</p>
+ <p>PUBCHEM: 5676</p>
+ <p>KEGG: C02713</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acnam_e_boundary" name="N-Acetylneuraminate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H18NO9</p>
+ <p>PUBCHEM: 3568</p>
+ <p>KEGG: C00270</p>
+ <p>CHEBI: 17012</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acolipa_e_boundary" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-9" fbc:chemicalFormula="C181H314N3O103P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C181H314N3O103P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acser_e_boundary" name="O-Acetyl-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H9NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO4</p>
+ <p>PUBCHEM: 4228</p>
+ <p>KEGG: C00979</p>
+ <p>CHEBI: 17981</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ade_e_boundary" name="Adenine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H5N5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5</p>
+ <p>PUBCHEM: 3447</p>
+ <p>KEGG: C00147</p>
+ <p>CHEBI: 16708</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adn_e_boundary" name="Adenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3512</p>
+ <p>KEGG: C00212</p>
+ <p>CHEBI: 16335</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_adocbl_e_boundary" name="Adenosylcobalamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C72H100CoN18O17P</p>
+ <p>PUBCHEM: 3494</p>
+ <p>KEGG: C00194</p>
+ <p>CHEBI: 18408</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ag_e_boundary" name="silver" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Ag">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ag</p>
+ <p>PUBCHEM: 8935</p>
+ <p>KEGG: C06710</p>
+ <p>CHEBI: 9141</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_agm_e_boundary" name="Agmatine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H16N4</p>
+ <p>PUBCHEM: 3479</p>
+ <p>KEGG: C00179</p>
+ <p>CHEBI: 17431</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_akg_e_boundary" name="2-Oxoglutarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4O5</p>
+ <p>PUBCHEM: 3328</p>
+ <p>KEGG: C00026</p>
+ <p>CHEBI: 30915</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__B_e_boundary" name="beta-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3399</p>
+ <p>KEGG: C00099</p>
+ <p>CHEBI: 16958</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__D_e_boundary" name="D-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3433</p>
+ <p>KEGG: C00133</p>
+ <p>CHEBI: 15570</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ala__L_e_boundary" name="L-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2</p>
+ <p>PUBCHEM: 3343</p>
+ <p>KEGG: C00041</p>
+ <p>CHEBI: 16977</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alaala_e_boundary" name="D-Alanyl-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O3</p>
+ <p>PUBCHEM: 4239</p>
+ <p>KEGG: C00993</p>
+ <p>CHEBI: 16576</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_all__D_e_boundary" name="D-Allose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4657</p>
+ <p>KEGG: C01487</p>
+ <p>CHEBI: 4093</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_alltn_e_boundary" name="Allantoin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H6N4O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6N4O3</p>
+ <p>PUBCHEM: 4709</p>
+ <p>KEGG: C01551</p>
+ <p>CHEBI: 15676</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_amp_e_boundary" name="AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3322</p>
+ <p>KEGG: C00020</p>
+ <p>CHEBI: 16027</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_anhgm_e_boundary" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C19H29N2O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arab__L_e_boundary" name="L-Arabinose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3558</p>
+ <p>KEGG: C00259</p>
+ <p>CHEBI: 17535</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn_e_boundary" name="aerobactin-minus-Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33N4O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arbtn__fe3_e_boundary" name="Aerobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C22H33FeN4O13</p>
+ <p>PUBCHEM: 7887</p>
+ <p>KEGG: C05554</p>
+ <p>CHEBI: 18157</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_arg__L_e_boundary" name="L-Arginine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N4O2</p>
+ <p>PUBCHEM: 3362</p>
+ <p>KEGG: C00062</p>
+ <p>CHEBI: 16467</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ascb__L_e_boundary" name="L-Ascorbate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H8O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O6</p>
+ <p>PUBCHEM: 3372</p>
+ <p>KEGG: C00072</p>
+ <p>CHEBI: 29073 38290</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asn__L_e_boundary" name="L-Asparagine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H8N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8N2O3</p>
+ <p>PUBCHEM: 3452</p>
+ <p>KEGG: C00152</p>
+ <p>CHEBI: 17196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_aso3_e_boundary" name="arsenite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="AsO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: AsO3</p>
+ <p>PUBCHEM: 8922</p>
+ <p>KEGG: C06697</p>
+ <p>CHEBI: 29866</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_asp__L_e_boundary" name="L-Aspartate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H6NO4</p>
+ <p>PUBCHEM: 3351</p>
+ <p>KEGG: C00049</p>
+ <p>CHEBI: 17053</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_but_e_boundary" name="Butyrate-n-C40" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H7O2</p>
+ <p>PUBCHEM: 3545</p>
+ <p>KEGG: C00246</p>
+ <p>CHEBI: 30772</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_butso3_e_boundary" name="butanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H9O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ca2_e_boundary" name="Calcium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ca</p>
+ <p>PUBCHEM: 3376</p>
+ <p>KEGG: C00076</p>
+ <p>CHEBI: 29108</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbi_e_boundary" name="Cobinamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C48H72CoN11O8</p>
+ <p>PUBCHEM: 8069</p>
+ <p>KEGG: C05774</p>
+ <p>CHEBI: 28956</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cbl1_e_boundary" name="Cob-I-alamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C62H88CoN13O14P</p>
+ <p>PUBCHEM: 4110</p>
+ <p>KEGG: C00853</p>
+ <p>CHEBI: 15982</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cd2_e_boundary" name="Cadmium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cd</p>
+ <p>PUBCHEM: 4601</p>
+ <p>KEGG: C01413</p>
+ <p>CHEBI: 48775</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cgly_e_boundary" name="Cys-Gly" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10N2O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3S</p>
+ <p>PUBCHEM: 4606</p>
+ <p>KEGG: C01419</p>
+ <p>CHEBI: 4047</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_chol_e_boundary" name="Choline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO</p>
+ <p>PUBCHEM: 3414</p>
+ <p>KEGG: C00114</p>
+ <p>CHEBI: 15354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cit_e_boundary" name="Citrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3458</p>
+ <p>KEGG: C00158</p>
+ <p>CHEBI: 30769</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_icit_e_boundary" name="Isocitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O7</p>
+ <p>PUBCHEM: 3605</p>
+ <p>KEGG: C00311</p>
+ <p>CHEBI: 30887</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_acon__C_e_boundary" name="cis-Aconitate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H3O6</p>
+ <p>PUBCHEM: 3707</p>
+ <p>KEGG: C00417</p>
+ <p>CHEBI: 32805</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cl_e_boundary" name="Chloride" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cl</p>
+ <p>PUBCHEM: 3415</p>
+ <p>KEGG: C00115</p>
+ <p>CHEBI: 17996</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cmp_e_boundary" name="CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O8P</p>
+ <p>PUBCHEM: 3357</p>
+ <p>KEGG: C00055</p>
+ <p>CHEBI: 17361</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_co2_e_boundary" name="CO2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CO2</p>
+ <p>PUBCHEM: 3313</p>
+ <p>KEGG: C00011</p>
+ <p>CHEBI: 16526</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cobalt2_e_boundary" name="Co2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Co</p>
+ <p>PUBCHEM: 3475</p>
+ <p>KEGG: C00175</p>
+ <p>CHEBI: 27638</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa_e_boundary" name="core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C176H303N2O100P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn_e_boundary" name="coprogen" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cpgn__un_e_boundary" name="coprogen-unloaded-no-Fe-III-" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C35H52N6O13</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_crn_e_boundary" name="L-Carnitine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H15NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO3</p>
+ <p>PUBCHEM: 3612</p>
+ <p>KEGG: C00318</p>
+ <p>CHEBI: 16347</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_csn_e_boundary" name="Cytosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H5N3O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H5N3O</p>
+ <p>PUBCHEM: 3670</p>
+ <p>KEGG: C00380</p>
+ <p>CHEBI: 16040</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu2_e_boundary" name="Cu2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 3370</p>
+ <p>KEGG: C00070</p>
+ <p>CHEBI: 28694</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cu_e_boundary" name="Cu" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Cu</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 49552</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cyan_e_boundary" name="Hydrogen-cyanide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CHN">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CHN</p>
+ <p>PUBCHEM: 4537</p>
+ <p>KEGG: C01326</p>
+ <p>CHEBI: 18407</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cynt_e_boundary" name="Cyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNO</p>
+ <p>PUBCHEM: 4604</p>
+ <p>KEGG: C01417</p>
+ <p>CHEBI: 28024</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__D_e_boundary" name="D-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 4051</p>
+ <p>KEGG: C00793</p>
+ <p>CHEBI: 16375</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cys__L_e_boundary" name="L-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO2S</p>
+ <p>PUBCHEM: 3397</p>
+ <p>KEGG: C00097</p>
+ <p>CHEBI: 17561</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cysi__L_e_boundary" name="L-Cystine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12N2O4S2</p>
+ <p>PUBCHEM: 3774</p>
+ <p>KEGG: C00491</p>
+ <p>CHEBI: 16283</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_cytd_e_boundary" name="Cytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H13N3O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O5</p>
+ <p>PUBCHEM: 3758</p>
+ <p>KEGG: C00475</p>
+ <p>CHEBI: 17562</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dad__2_e_boundary" name="Deoxyadenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O3</p>
+ <p>PUBCHEM: 3839</p>
+ <p>KEGG: C00559</p>
+ <p>CHEBI: 17256</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_damp_e_boundary" name="dAMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O6P</p>
+ <p>PUBCHEM: 3651</p>
+ <p>KEGG: C00360</p>
+ <p>CHEBI: 17713</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dca_e_boundary" name="Decanoate-n-C100" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H19O2</p>
+ <p>PUBCHEM: 4728</p>
+ <p>KEGG: C01571</p>
+ <p>CHEBI: 30813</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcmp_e_boundary" name="dCMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N3O7P</p>
+ <p>PUBCHEM: 3538</p>
+ <p>KEGG: C00239</p>
+ <p>CHEBI: 15918</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dcyt_e_boundary" name="Deoxycytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H13N3O4</p>
+ <p>PUBCHEM: 4137</p>
+ <p>KEGG: C00881</p>
+ <p>CHEBI: 15698</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ddca_e_boundary" name="Dodecanoate-n-C120" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H23O2</p>
+ <p>PUBCHEM: 5649</p>
+ <p>KEGG: C02679</p>
+ <p>CHEBI: 30805</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgmp_e_boundary" name="dGMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O7P</p>
+ <p>PUBCHEM: 3653</p>
+ <p>KEGG: C00362</p>
+ <p>CHEBI: 16192</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dgsn_e_boundary" name="Deoxyguanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O4</p>
+ <p>PUBCHEM: 3624</p>
+ <p>KEGG: C00330</p>
+ <p>CHEBI: 17172</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dha_e_boundary" name="Dihydroxyacetone" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3484</p>
+ <p>KEGG: C00184</p>
+ <p>CHEBI: 16016</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dimp_e_boundary" name="dIMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O7P</p>
+ <p>PUBCHEM: 8446</p>
+ <p>KEGG: C06196</p>
+ <p>CHEBI: 28806</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_din_e_boundary" name="Deoxyinosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H12N4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O4</p>
+ <p>PUBCHEM: 7859</p>
+ <p>KEGG: C05512</p>
+ <p>CHEBI: 28997</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dms_e_boundary" name="Dimethyl-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6S</p>
+ <p>PUBCHEM: 3859</p>
+ <p>KEGG: C00580</p>
+ <p>CHEBI: 17437</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dmso_e_boundary" name="Dimethyl-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H6OS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6OS</p>
+ <p>PUBCHEM: 13325</p>
+ <p>KEGG: C11143</p>
+ <p>CHEBI: 28262</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dopa_e_boundary" name="Dopamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO2</p>
+ <p>PUBCHEM: 6517</p>
+ <p>KEGG: C03758</p>
+ <p>CHEBI: 18243</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dtmp_e_boundary" name="dTMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N2O8P</p>
+ <p>PUBCHEM: 3655</p>
+ <p>KEGG: C00364</p>
+ <p>CHEBI: 17013</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dump_e_boundary" name="dUMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O8P</p>
+ <p>PUBCHEM: 3656</p>
+ <p>KEGG: C00365</p>
+ <p>CHEBI: 17622</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_duri_e_boundary" name="Deoxyuridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H12N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O5</p>
+ <p>PUBCHEM: 3809</p>
+ <p>KEGG: C00526</p>
+ <p>CHEBI: 16450</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_eca4colipa_e_boundary" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-15" fbc:chemicalFormula="C272H447N14O160P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C272H447N14O160P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enlipa_e_boundary" name="phosphoethanolamine-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C112H202N3O42P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C112H202N3O42P3</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_enter_e_boundary" name="Enterochelin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C30H27N3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27N3O15</p>
+ <p>PUBCHEM: 8116</p>
+ <p>KEGG: C05821</p>
+ <p>CHEBI: 28855</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etha_e_boundary" name="Ethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H8NO</p>
+ <p>PUBCHEM: 3489</p>
+ <p>KEGG: C00189</p>
+ <p>CHEBI: 16000</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ethso3_e_boundary" name="ethanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O3S</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_etoh_e_boundary" name="Ethanol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H6O</p>
+ <p>PUBCHEM: 3752</p>
+ <p>KEGG: C00469</p>
+ <p>CHEBI: 16236</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_f6p_e_boundary" name="D-Fructose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3385</p>
+ <p>KEGG: C00085</p>
+ <p>CHEBI: 15946</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fald_e_boundary" name="Formaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CH2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH2O</p>
+ <p>PUBCHEM: 3367</p>
+ <p>KEGG: C00067</p>
+ <p>CHEBI: 16842</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe2_e_boundary" name="Fe2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 3325</p>
+ <p>KEGG: C00023</p>
+ <p>CHEBI: 18248</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3_e_boundary" name="Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 14819</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dcit_e_boundary" name="Fe-III-dicitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H10FeO14">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H10FeO14</p>
+ <p>PUBCHEM: 8472</p>
+ <p>KEGG: C06229</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs_e_boundary" name="ferric-2-3-dihydroxybenzoylserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H10NO6Fe</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox_e_boundary" name="Fe-III-hydroxamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3Fe</p>
+ <p>PUBCHEM: 8470</p>
+ <p>KEGG: C06227</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3hox__un_e_boundary" name="Fe-III-hydoxamate-unloaded" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O6N3</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm_e_boundary" name="Ferrichrome" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42FeN9O12</p>
+ <p>PUBCHEM: 8471</p>
+ <p>KEGG: C06228</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fecrm__un_e_boundary" name="Ferrichrome-minus-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H42N9O12</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feenter_e_boundary" name="Fe-enterobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H27FeN3O15</p>
+ <p>PUBCHEM: 8473</p>
+ <p>KEGG: C06230</p>
+ <p>CHEBI: 28199</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam_e_boundary" name="ferroxamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46FeN6O8</p>
+ <p>PUBCHEM: 9799</p>
+ <p>KEGG: C07597</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feoxam__un_e_boundary" name="ferroxamine-minus-Fe-3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H46N6O8</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_for_e_boundary" name="Formate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH1O2</p>
+ <p>PUBCHEM: 3358</p>
+ <p>KEGG: C00058</p>
+ <p>CHEBI: 30751</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fru_e_boundary" name="D-Fructose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3395</p>
+ <p>KEGG: C00095</p>
+ <p>CHEBI: 15824</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_frulys_e_boundary" name="fructoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 47205784</p>
+ <p>KEGG: C16488</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fruur_e_boundary" name="D-Fructuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 4160</p>
+ <p>KEGG: C00905</p>
+ <p>CHEBI: 4126</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fuc__L_e_boundary" name="L-Fucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 4264</p>
+ <p>KEGG: C01019</p>
+ <p>CHEBI: 2181</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fum_e_boundary" name="Fumarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O4</p>
+ <p>PUBCHEM: 3422</p>
+ <p>KEGG: C00122</p>
+ <p>CHEBI: 18012</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g1p_e_boundary" name="D-Glucose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3403</p>
+ <p>KEGG: C00103</p>
+ <p>CHEBI: 16077 29042</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pc_e_boundary" name="sn-Glycero-3-phosphocholine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H20NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H20NO6P</p>
+ <p>PUBCHEM: 3939</p>
+ <p>KEGG: C00670</p>
+ <p>CHEBI: 16870</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pe_e_boundary" name="sn-Glycero-3-phosphoethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H14NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H14NO6P</p>
+ <p>PUBCHEM: 4454</p>
+ <p>KEGG: C01233</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pg_e_boundary" name="Glycerophosphoglycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O8P</p>
+ <p>PUBCHEM: 6135</p>
+ <p>KEGG: C03274</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3pi_e_boundary" name="sn-Glycero-3-phospho-1-inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H18O11P</p>
+ <p>PUBCHEM: 4447</p>
+ <p>KEGG: C01225</p>
+ <p>CHEBI: 18321</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g3ps_e_boundary" name="Glycerophosphoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3081457</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_g6p_e_boundary" name="D-Glucose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3392</p>
+ <p>KEGG: C00092</p>
+ <p>CHEBI: 4170</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal1p_e_boundary" name="alpha-D-Galactose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3734</p>
+ <p>KEGG: C00446</p>
+ <p>CHEBI: 17973</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal__bD_e_boundary" name="beta-D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4738</p>
+ <p>KEGG: C01582</p>
+ <p>CHEBI: 28260</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gal_e_boundary" name="D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3424</p>
+ <p>KEGG: C00124</p>
+ <p>CHEBI: 4139</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galct__D_e_boundary" name="D-Galactarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4135</p>
+ <p>KEGG: C00879</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__D_e_boundary" name="D-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4136</p>
+ <p>KEGG: C00880</p>
+ <p>CHEBI: 12931 16534</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galctn__L_e_boundary" name="L-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 47205248</p>
+ <p>KEGG: C15930</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galt_e_boundary" name="Galactitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4837</p>
+ <p>KEGG: C01697</p>
+ <p>CHEBI: 16813</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_galur_e_boundary" name="D-Galacturonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3627</p>
+ <p>KEGG: C00333</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam6p_e_boundary" name="D-Glucosamine-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO8P</p>
+ <p>PUBCHEM: 3645</p>
+ <p>KEGG: C00352</p>
+ <p>CHEBI: 15873</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gam_e_boundary" name="D-Glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO5</p>
+ <p>PUBCHEM: 3623</p>
+ <p>KEGG: C00329</p>
+ <p>CHEBI: 47977</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gbbtn_e_boundary" name="gamma-butyrobetaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H15NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H15NO2</p>
+ <p>PUBCHEM: 4408</p>
+ <p>KEGG: C01181</p>
+ <p>CHEBI: 1941</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gdp_e_boundary" name="GDP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O11P2</p>
+ <p>PUBCHEM: 3337</p>
+ <p>KEGG: C00035</p>
+ <p>CHEBI: 17552</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glc__D_e_boundary" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3333</p>
+ <p>KEGG: C00031</p>
+ <p>CHEBI: 4167</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcn_e_boundary" name="D-Gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 3556</p>
+ <p>KEGG: C00257</p>
+ <p>CHEBI: 33198</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcr_e_boundary" name="D-Glucarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O8</p>
+ <p>PUBCHEM: 4076</p>
+ <p>KEGG: C00818</p>
+ <p>CHEBI: 16002</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur1p_e_boundary" name="D-Glucuronate-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H8O10P</p>
+ <p>PUBCHEM: 7759</p>
+ <p>KEGG: C05385</p>
+ <p>CHEBI: 28547</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glcur_e_boundary" name="D-Glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9O7</p>
+ <p>PUBCHEM: 3491</p>
+ <p>KEGG: C00191</p>
+ <p>CHEBI: 4178 47952</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gln__L_e_boundary" name="L-Glutamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10N2O3</p>
+ <p>PUBCHEM: 3364</p>
+ <p>KEGG: C00064</p>
+ <p>CHEBI: 18050</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glu__L_e_boundary" name="L-Glutamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H8NO4</p>
+ <p>PUBCHEM: 3327</p>
+ <p>KEGG: C00025</p>
+ <p>CHEBI: 16015</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gly_e_boundary" name="Glycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H5NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5NO2</p>
+ <p>PUBCHEM: 3339</p>
+ <p>KEGG: C00037</p>
+ <p>CHEBI: 15428</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyald_e_boundary" name="D-Glyceraldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H6O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O3</p>
+ <p>PUBCHEM: 3856</p>
+ <p>KEGG: C00577</p>
+ <p>CHEBI: 17378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyb_e_boundary" name="Glycine-betaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3985</p>
+ <p>KEGG: C00719</p>
+ <p>CHEBI: 17750</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc2p_e_boundary" name="Glycerol-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 5889</p>
+ <p>KEGG: C02979</p>
+ <p>CHEBI: 17270</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc3p_e_boundary" name="Glycerol-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7O6P</p>
+ <p>PUBCHEM: 3393</p>
+ <p>KEGG: C00093</p>
+ <p>CHEBI: 15978</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc__R_e_boundary" name="R-Glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O4</p>
+ <p>PUBCHEM: 3557</p>
+ <p>KEGG: C00258</p>
+ <p>CHEBI: 32398</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyc_e_boundary" name="Glycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H8O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H8O3</p>
+ <p>PUBCHEM: 3416</p>
+ <p>KEGG: C00116</p>
+ <p>CHEBI: 17754</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_glyclt_e_boundary" name="Glycolate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H3O3</p>
+ <p>PUBCHEM: 3460</p>
+ <p>KEGG: C00160</p>
+ <p>CHEBI: 17497</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gmp_e_boundary" name="GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O8P</p>
+ <p>PUBCHEM: 3444</p>
+ <p>KEGG: C00144</p>
+ <p>CHEBI: 17345</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gsn_e_boundary" name="Guanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H13N5O5</p>
+ <p>PUBCHEM: 3677</p>
+ <p>KEGG: C00387</p>
+ <p>CHEBI: 16750</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthox_e_boundary" name="Oxidized-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C20H30N6O12S2</p>
+ <p>PUBCHEM: 3427</p>
+ <p>KEGG: C00127</p>
+ <p>CHEBI: 17858</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gthrd_e_boundary" name="Reduced-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H16N3O6S</p>
+ <p>PUBCHEM: 3353</p>
+ <p>KEGG: C00051</p>
+ <p>CHEBI: 16856</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gtp_e_boundary" name="GTP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N5O14P3</p>
+ <p>PUBCHEM: 3346</p>
+ <p>KEGG: C00044</p>
+ <p>CHEBI: 15996</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_gua_e_boundary" name="Guanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H5N5O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H5N5O</p>
+ <p>PUBCHEM: 3541</p>
+ <p>KEGG: C00242</p>
+ <p>CHEBI: 16235</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2_e_boundary" name="H2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2</p>
+ <p>PUBCHEM: 3577</p>
+ <p>KEGG: C00282</p>
+ <p>CHEBI: 18276</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o2_e_boundary" name="Hydrogen-peroxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O2</p>
+ <p>PUBCHEM: 3329</p>
+ <p>KEGG: C00027</p>
+ <p>CHEBI: 16240</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2o_e_boundary" name="H2O" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2O</p>
+ <p>PUBCHEM: 3303</p>
+ <p>KEGG: C00001</p>
+ <p>CHEBI: 15377</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h2s_e_boundary" name="Hydrogen-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H2S</p>
+ <p>PUBCHEM: 3578</p>
+ <p>KEGG: C00283</p>
+ <p>CHEBI: 16136</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_h_e_boundary" name="H" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H</p>
+ <p>PUBCHEM: 3380</p>
+ <p>KEGG: C00080</p>
+ <p>CHEBI: 15378</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hacolipa_e_boundary" name="hepta-acylated-core-oligosaccharide-lipid-A-E-coli" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-11" fbc:chemicalFormula="C192H333N2O101P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C192H333N2O101P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_halipa_e_boundary" name="hepta-acylated-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C126H226N2O40P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C126H226N2O40P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdca_e_boundary" name="Hexadecanoate-n-C160" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H31O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>KEGG: C00249</p>
+ <p>CHEBI: 15756</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hdcea_e_boundary" name="Hexadecenoate-n-C161" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H29O2</p>
+ <p>PUBCHEM: 3548</p>
+ <p>KEGG: C00249</p>
+ <p>CHEBI: 15756</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hg2_e_boundary" name="Hg2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Hg</p>
+ <p>PUBCHEM: 3970</p>
+ <p>KEGG: C00703</p>
+ <p>CHEBI: 16793</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_his__L_e_boundary" name="L-Histidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H9N3O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H9N3O2</p>
+ <p>PUBCHEM: 3435</p>
+ <p>KEGG: C00135</p>
+ <p>CHEBI: 15971</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hom__L_e_boundary" name="L-Homoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3561</p>
+ <p>KEGG: C00263</p>
+ <p>CHEBI: 15699</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxa_e_boundary" name="Hexanoate-n-C60" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O2</p>
+ <p>PUBCHEM: 4740</p>
+ <p>KEGG: C01585</p>
+ <p>CHEBI: 30776</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_hxan_e_boundary" name="Hypoxanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H4N4O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O</p>
+ <p>PUBCHEM: 3560</p>
+ <p>KEGG: C00262</p>
+ <p>CHEBI: 17368</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_idon__L_e_boundary" name="L-Idonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O7</p>
+ <p>PUBCHEM: 4032</p>
+ <p>KEGG: C00770</p>
+ <p>CHEBI: 17796</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ile__L_e_boundary" name="L-Isoleucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3697</p>
+ <p>KEGG: C00407</p>
+ <p>CHEBI: 17191</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_imp_e_boundary" name="IMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O8P</p>
+ <p>PUBCHEM: 3430</p>
+ <p>KEGG: C00130</p>
+ <p>CHEBI: 17202</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_indole_e_boundary" name="Indole" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H7N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7N</p>
+ <p>PUBCHEM: 3747</p>
+ <p>KEGG: C00463</p>
+ <p>CHEBI: 16881</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_inost_e_boundary" name="myo-Inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3437</p>
+ <p>KEGG: C00137</p>
+ <p>CHEBI: 17268</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ins_e_boundary" name="Inosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H12N4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O5</p>
+ <p>PUBCHEM: 3588</p>
+ <p>KEGG: C00294</p>
+ <p>CHEBI: 17596</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_isetac_e_boundary" name="Isethionic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H5O4S</p>
+ <p>PUBCHEM: 7545</p>
+ <p>KEGG: C05123</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_k_e_boundary" name="potassium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: K</p>
+ <p>PUBCHEM: 3537</p>
+ <p>KEGG: C00238</p>
+ <p>CHEBI: 29103</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_kdo2lipid4_e_boundary" name="KDO-2-lipid-IV-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C84H148N2O37P2</p>
+ <p>PUBCHEM: 8297</p>
+ <p>KEGG: C06025</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__D_e_boundary" name="D-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3555</p>
+ <p>KEGG: C00256</p>
+ <p>CHEBI: 42111</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lac__L_e_boundary" name="L-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O3</p>
+ <p>PUBCHEM: 3486</p>
+ <p>KEGG: C00186</p>
+ <p>CHEBI: 422</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lcts_e_boundary" name="Lactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3542</p>
+ <p>KEGG: C00243</p>
+ <p>CHEBI: 36219</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_leu__L_e_boundary" name="L-Leucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H13NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H13NO2</p>
+ <p>PUBCHEM: 3423</p>
+ <p>KEGG: C00123</p>
+ <p>CHEBI: 15603</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa__cold_e_boundary" name="cold-adapted-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C114H202N2O39P2</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lipa_e_boundary" name="KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C110H196N2O39P2</p>
+ <p>PUBCHEM: 8298</p>
+ <p>KEGG: C06026</p>
+ <p>CHEBI: 27963</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lys__L_e_boundary" name="L-Lysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H15N2O2</p>
+ <p>PUBCHEM: 3349</p>
+ <p>KEGG: C00047</p>
+ <p>CHEBI: 18019</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_lyx__L_e_boundary" name="L-Lyxose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 4676</p>
+ <p>KEGG: C01508</p>
+ <p>CHEBI: 28480</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__D_e_boundary" name="D-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3780</p>
+ <p>KEGG: C00497</p>
+ <p>CHEBI: 30796</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mal__L_e_boundary" name="L-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O5</p>
+ <p>PUBCHEM: 3449</p>
+ <p>KEGG: C00149</p>
+ <p>CHEBI: 30797</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malt_e_boundary" name="Maltose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3508</p>
+ <p>KEGG: C00208</p>
+ <p>CHEBI: 17306</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malthx_e_boundary" name="Maltohexaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C36H62O31">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C36H62O31</p>
+ <p>PUBCHEM: 5041</p>
+ <p>KEGG: C01936</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltpt_e_boundary" name="Maltopentaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C30H52O26">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C30H52O26</p>
+ <p>PUBCHEM: 124005??3611</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 28057</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_malttr_e_boundary" name="Maltotriose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C18H32O16">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H32O16</p>
+ <p>PUBCHEM: 4954</p>
+ <p>KEGG: C01835</p>
+ <p>CHEBI: 27931</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_maltttr_e_boundary" name="Maltotetraose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C24H42O21">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C24H42O21</p>
+ <p>PUBCHEM: 5141</p>
+ <p>KEGG: C02052</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man6p_e_boundary" name="D-Mannose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H11O9P</p>
+ <p>PUBCHEM: 3572</p>
+ <p>KEGG: C00275</p>
+ <p>CHEBI: 17369</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_man_e_boundary" name="D-Mannose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 3459</p>
+ <p>KEGG: C00159</p>
+ <p>CHEBI: 4208</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_manglyc_e_boundary" name="2-alpha-D-Mannosyl-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H15O9</p>
+ <p>PUBCHEM: 13711</p>
+ <p>KEGG: C11544</p>
+ <p>CHEBI: 15847</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_melib_e_boundary" name="Melibiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 7769</p>
+ <p>KEGG: C05402</p>
+ <p>CHEBI: 28053</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__D_e_boundary" name="D-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10NO2S</p>
+ <p>PUBCHEM: 4112</p>
+ <p>KEGG: C00855</p>
+ <p>CHEBI: 16867</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_met__L_e_boundary" name="L-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2S</p>
+ <p>PUBCHEM: 3373</p>
+ <p>KEGG: C00073</p>
+ <p>CHEBI: 16643</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__R__L_e_boundary" name="L-methionine-R-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 847</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_metsox__S__L_e_boundary" name="L-Methionine-Sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO3S</p>
+ <p>PUBCHEM: 5898</p>
+ <p>KEGG: C02989</p>
+ <p>CHEBI: 17016</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mg2_e_boundary" name="magnesium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mg</p>
+ <p>PUBCHEM: 3599</p>
+ <p>KEGG: C00305</p>
+ <p>CHEBI: 18420</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_minohp_e_boundary" name="myo-Inositol-hexakisphosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H6O24P6</p>
+ <p>PUBCHEM: 4428</p>
+ <p>KEGG: C01204</p>
+ <p>CHEBI: 17401</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mmet_e_boundary" name="S-Methyl-L-methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14NO2S</p>
+ <p>PUBCHEM: 6054</p>
+ <p>KEGG: C03172</p>
+ <p>CHEBI: 17728</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mn2_e_boundary" name="Mn2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Mn</p>
+ <p>PUBCHEM: 3336</p>
+ <p>KEGG: C00034</p>
+ <p>CHEBI: 18291</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mnl_e_boundary" name="D-Mannitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 3682</p>
+ <p>KEGG: C00392</p>
+ <p>CHEBI: 16899</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mobd_e_boundary" name="Molybdate-MoO4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8475</p>
+ <p>KEGG: C06232</p>
+ <p>CHEBI: 36264</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_mso3_e_boundary" name="methanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH3O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3O3S</p>
+ <p>PUBCHEM: 49991312</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 25224</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_n2o_e_boundary" name="Nitrous-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: N2O</p>
+ <p>PUBCHEM: 4143</p>
+ <p>KEGG: C00887</p>
+ <p>CHEBI: 17045</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_na1_e_boundary" name="Sodium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Na</p>
+ <p>PUBCHEM: 4541</p>
+ <p>KEGG: C01330</p>
+ <p>CHEBI: 29101</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nac_e_boundary" name="Nicotinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H4NO2</p>
+ <p>PUBCHEM: 3552</p>
+ <p>KEGG: C00253</p>
+ <p>CHEBI: 15940</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nh4_e_boundary" name="Ammonium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: H4N</p>
+ <p>PUBCHEM: 4547</p>
+ <p>KEGG: C01342</p>
+ <p>CHEBI: 28938</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ni2_e_boundary" name="nickel" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Ni</p>
+ <p>PUBCHEM: 3585</p>
+ <p>KEGG: C00291</p>
+ <p>CHEBI: 28112</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_nmn_e_boundary" name="NMN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H14N2O8P</p>
+ <p>PUBCHEM: 3741</p>
+ <p>KEGG: C00455</p>
+ <p>CHEBI: 16171</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no2_e_boundary" name="Nitrite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO2</p>
+ <p>PUBCHEM: 3388</p>
+ <p>KEGG: C00088</p>
+ <p>CHEBI: 16301</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no3_e_boundary" name="Nitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO3</p>
+ <p>PUBCHEM: 3543</p>
+ <p>KEGG: C00244</p>
+ <p>CHEBI: 48107</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_no_e_boundary" name="Nitric-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: NO</p>
+ <p>PUBCHEM: 3815</p>
+ <p>KEGG: C00533</p>
+ <p>CHEBI: 16480</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2_e_boundary" name="O2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3309</p>
+ <p>KEGG: C00007</p>
+ <p>CHEBI: 15379</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_o2s_e_boundary" name="Superoxide-anion" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2</p>
+ <p>PUBCHEM: 3971</p>
+ <p>KEGG: C00704</p>
+ <p>CHEBI: 18421</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdca_e_boundary" name="octadecanoate-n-C180" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H35O2</p>
+ <p>PUBCHEM: 4692</p>
+ <p>KEGG: C01530</p>
+ <p>CHEBI: 25629</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ocdcea_e_boundary" name="octadecenoate-n-C181" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C18H33O2</p>
+ <p>PUBCHEM: 3978</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 16196</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_octa_e_boundary" name="octanoate-n-C80" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H15O2</p>
+ <p>PUBCHEM: 8658</p>
+ <p>KEGG: C06423</p>
+ <p>CHEBI: 28837</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orn_e_boundary" name="Ornithine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H13N2O2</p>
+ <p>PUBCHEM: 4756</p>
+ <p>KEGG: C01602</p>
+ <p>CHEBI: 18257</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_orot_e_boundary" name="Orotate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H3N2O4</p>
+ <p>PUBCHEM: 3589</p>
+ <p>KEGG: C00295</p>
+ <p>CHEBI: 16742</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_oaa_e_boundary" name="Oxaloacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2O5</p>
+ <p>PUBCHEM: 3338</p>
+ <p>KEGG: C00036</p>
+ <p>CHEBI: 30744</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pacald_e_boundary" name="Phenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H8O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H8O</p>
+ <p>PUBCHEM: 3876</p>
+ <p>KEGG: C00601</p>
+ <p>CHEBI: 16424</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_peamn_e_boundary" name="Phenethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12N</p>
+ <p>PUBCHEM: 7711</p>
+ <p>KEGG: C05332</p>
+ <p>CHEBI: 18397</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_phe__L_e_boundary" name="L-Phenylalanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO2</p>
+ <p>PUBCHEM: 3379</p>
+ <p>KEGG: C00079</p>
+ <p>CHEBI: 17295</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pheme_e_boundary" name="Protoheme" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C34H30FeN4O4</p>
+ <p>PUBCHEM: 3334</p>
+ <p>KEGG: C00032</p>
+ <p>CHEBI: 17627</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pi_e_boundary" name="Phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO4P</p>
+ <p>PUBCHEM: 3311</p>
+ <p>KEGG: C00009</p>
+ <p>CHEBI: 18367</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pnto__R_e_boundary" name="R-Pantothenate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H16NO5</p>
+ <p>PUBCHEM: 4121</p>
+ <p>KEGG: C00864</p>
+ <p>CHEBI: 29032 46905 7916</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppa_e_boundary" name="Propionate-n-C30" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H5O2</p>
+ <p>PUBCHEM: 3463</p>
+ <p>KEGG: C00163</p>
+ <p>CHEBI: 30768</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppal_e_boundary" name="Propanal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H6O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6O</p>
+ <p>PUBCHEM: 3762</p>
+ <p>KEGG: C00479</p>
+ <p>CHEBI: 17153</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pppn_e_boundary" name="Phenylpropanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H9O2</p>
+ <p>PUBCHEM: 7943</p>
+ <p>KEGG: C05629</p>
+ <p>CHEBI: 28631</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ppt_e_boundary" name="Phosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO3P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: HO3P</p>
+ <p>PUBCHEM: 8926</p>
+ <p>KEGG: C06701</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pro__L_e_boundary" name="L-Proline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H9NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9NO2</p>
+ <p>PUBCHEM: 3448</p>
+ <p>KEGG: C00148</p>
+ <p>CHEBI: 17203</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_progly_e_boundary" name="L-Prolinylglycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H12N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H12N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_psclys_e_boundary" name="psicoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H25N2O7</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pser__L_e_boundary" name="O-Phospho-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H6NO6P</p>
+ <p>PUBCHEM: 4251</p>
+ <p>KEGG: C01005</p>
+ <p>CHEBI: 15811</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ptrc_e_boundary" name="Putrescine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H14N2</p>
+ <p>PUBCHEM: 3434</p>
+ <p>KEGG: C00134</p>
+ <p>CHEBI: 17148</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pyr_e_boundary" name="Pyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H3O3</p>
+ <p>PUBCHEM: 3324</p>
+ <p>KEGG: C00022</p>
+ <p>CHEBI: 32816</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_r5p_e_boundary" name="alpha-D-Ribose-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H9O8P</p>
+ <p>PUBCHEM: 3417</p>
+ <p>KEGG: C00117</p>
+ <p>CHEBI: 17797</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rib__D_e_boundary" name="D-Ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3421</p>
+ <p>KEGG: C00121</p>
+ <p>CHEBI: 47013</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rmn_e_boundary" name="L-Rhamnose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O5</p>
+ <p>PUBCHEM: 3790</p>
+ <p>KEGG: C00507</p>
+ <p>CHEBI: 16055</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sbt__D_e_boundary" name="D-Sorbitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H14O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H14O6</p>
+ <p>PUBCHEM: 4052</p>
+ <p>KEGG: C00794</p>
+ <p>CHEBI: 17924</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__D_e_boundary" name="D-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 4003</p>
+ <p>KEGG: C00740</p>
+ <p>CHEBI: 16523</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ser__L_e_boundary" name="L-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H7NO3</p>
+ <p>PUBCHEM: 3365</p>
+ <p>KEGG: C00065</p>
+ <p>CHEBI: 17115</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_skm_e_boundary" name="Shikimate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H9O5</p>
+ <p>PUBCHEM: 3776</p>
+ <p>KEGG: C00493</p>
+ <p>CHEBI: 16119</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so2_e_boundary" name="sulfur-dioxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="O2S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O2S</p>
+ <p>PUBCHEM: 11497</p>
+ <p>KEGG: C09306</p>
+ <p>CHEBI: 18422</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so3_e_boundary" name="Sulfite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S</p>
+ <p>PUBCHEM: 3394</p>
+ <p>KEGG: C00094</p>
+ <p>CHEBI: 48854</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_so4_e_boundary" name="Sulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4S</p>
+ <p>PUBCHEM: 3359</p>
+ <p>KEGG: C00059</p>
+ <p>CHEBI: 16189</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_spmd_e_boundary" name="Spermidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H22N3</p>
+ <p>PUBCHEM: 3609</p>
+ <p>KEGG: C00315</p>
+ <p>CHEBI: 16610</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_succ_e_boundary" name="Succinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O4</p>
+ <p>PUBCHEM: 3344</p>
+ <p>KEGG: C00042</p>
+ <p>CHEBI: 15741</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sucr_e_boundary" name="Sucrose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 3389</p>
+ <p>KEGG: C00089</p>
+ <p>CHEBI: 17992</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_sulfac_e_boundary" name="sulfoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H2O5S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H2O5S</p>
+ <p>PUBCHEM: 7846991</p>
+ <p>KEGG: C14179</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__L_e_boundary" name="L-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 4154</p>
+ <p>KEGG: C00898</p>
+ <p>CHEBI: 15671 30924</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_taur_e_boundary" name="Taurine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H7NO3S">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7NO3S</p>
+ <p>PUBCHEM: 3544</p>
+ <p>KEGG: C00245</p>
+ <p>CHEBI: 15891</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcynt_e_boundary" name="Thiocyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CNS</p>
+ <p>PUBCHEM: 4888</p>
+ <p>KEGG: C01755</p>
+ <p>CHEBI: 29200</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thm_e_boundary" name="Thiamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H17N4OS</p>
+ <p>PUBCHEM: 3668</p>
+ <p>KEGG: C00378</p>
+ <p>CHEBI: 18385</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thr__L_e_boundary" name="L-Threonine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H9NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H9NO3</p>
+ <p>PUBCHEM: 3488</p>
+ <p>KEGG: C00188</p>
+ <p>CHEBI: 16857</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thrp_e_boundary" name="L-Threonine-O-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H8NO6P</p>
+ <p>PUBCHEM: 14294</p>
+ <p>KEGG: C12147</p>
+ <p>CHEBI: 37525</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thym_e_boundary" name="Thymine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H6N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H6N2O2</p>
+ <p>PUBCHEM: 3478</p>
+ <p>KEGG: C00178</p>
+ <p>CHEBI: 17821</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_thymd_e_boundary" name="Thymidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H14N2O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H14N2O5</p>
+ <p>PUBCHEM: 3514</p>
+ <p>KEGG: C00214</p>
+ <p>CHEBI: 17748</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tma_e_boundary" name="trimethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H10N</p>
+ <p>PUBCHEM: 3844</p>
+ <p>KEGG: C00565</p>
+ <p>CHEBI: 18139</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tmao_e_boundary" name="Trimethylamine-N-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H9NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H9NO</p>
+ <p>PUBCHEM: 4338</p>
+ <p>KEGG: C01104</p>
+ <p>CHEBI: 15724</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tre_e_boundary" name="Trehalose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C12H22O11</p>
+ <p>PUBCHEM: 4320</p>
+ <p>KEGG: C01083</p>
+ <p>CHEBI: 16551</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_trp__L_e_boundary" name="L-Tryptophan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C11H12N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C11H12N2O2</p>
+ <p>PUBCHEM: 3378</p>
+ <p>KEGG: C00078</p>
+ <p>CHEBI: 16828</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tsul_e_boundary" name="Thiosulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O3S2</p>
+ <p>PUBCHEM: 3614</p>
+ <p>KEGG: C00320</p>
+ <p>CHEBI: 16094</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdca_e_boundary" name="tetradecanoate-n-C140" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H27O2</p>
+ <p>PUBCHEM: 8659</p>
+ <p>KEGG: C06424</p>
+ <p>CHEBI: 28875 30807</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ttdcea_e_boundary" name="tetradecenoate-n-C141" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C14H25O2</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tungs_e_boundary" name="tungstate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O4W1</p>
+ <p>PUBCHEM: 26697048</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 46502</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tym_e_boundary" name="Tyramine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H12NO</p>
+ <p>PUBCHEM: 3766</p>
+ <p>KEGG: C00483</p>
+ <p>CHEBI: 15760</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyr__L_e_boundary" name="L-Tyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H11NO3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11NO3</p>
+ <p>PUBCHEM: 3382</p>
+ <p>KEGG: C00082</p>
+ <p>CHEBI: 17895</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tyrp_e_boundary" name="Phosphotyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10NO6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H10NO6P</p>
+ <p>PUBCHEM: 8732</p>
+ <p>KEGG: C06501</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uacgam_e_boundary" name="UDP-N-acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3345</p>
+ <p>KEGG: C00043</p>
+ <p>CHEBI: 16264</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpacgal_e_boundary" name="UDP-N-acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C17H25N3O17P2</p>
+ <p>PUBCHEM: 3503</p>
+ <p>KEGG: C00203</p>
+ <p>CHEBI: 16650</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpg_e_boundary" name="UDPglucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3331</p>
+ <p>KEGG: C00029</p>
+ <p>CHEBI: 18066</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpgal_e_boundary" name="UDPgalactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H22N2O17P2</p>
+ <p>PUBCHEM: 3354</p>
+ <p>KEGG: C00052</p>
+ <p>CHEBI: 18307</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udpglcur_e_boundary" name="UDP-D-glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C15H19N2O18P2</p>
+ <p>PUBCHEM: 3467</p>
+ <p>KEGG: C00167</p>
+ <p>CHEBI: 17200</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ump_e_boundary" name="UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H11N2O9P</p>
+ <p>PUBCHEM: 3405</p>
+ <p>KEGG: C00105</p>
+ <p>CHEBI: 16695</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_ura_e_boundary" name="Uracil" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H4N2O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4N2O2</p>
+ <p>PUBCHEM: 3406</p>
+ <p>KEGG: C00106</p>
+ <p>CHEBI: 17568</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_urea_e_boundary" name="Urea" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CH4N2O">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH4N2O</p>
+ <p>PUBCHEM: 3386</p>
+ <p>KEGG: C00086</p>
+ <p>CHEBI: 16199</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_uri_e_boundary" name="Uridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H12N2O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C9H12N2O6</p>
+ <p>PUBCHEM: 3593</p>
+ <p>KEGG: C00299</p>
+ <p>CHEBI: 16704</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_val__L_e_boundary" name="L-Valine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H11NO2</p>
+ <p>PUBCHEM: 3483</p>
+ <p>KEGG: C00183</p>
+ <p>CHEBI: 16414</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xan_e_boundary" name="Xanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H4N4O2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H4N4O2</p>
+ <p>PUBCHEM: 3675</p>
+ <p>KEGG: C00385</p>
+ <p>CHEBI: 17712</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xmp_e_boundary" name="Xanthosine-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H11N4O9P</p>
+ <p>PUBCHEM: 3925</p>
+ <p>KEGG: C00655</p>
+ <p>CHEBI: 15652</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xtsn_e_boundary" name="Xanthosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H12N4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C10H12N4O6</p>
+ <p>PUBCHEM: 4895</p>
+ <p>KEGG: C01762</p>
+ <p>CHEBI: 18107</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xyl__D_e_boundary" name="D-Xylose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3481</p>
+ <p>KEGG: C00181</p>
+ <p>CHEBI: 15936</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_xylu__L_e_boundary" name="L-Xylulose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O5</p>
+ <p>PUBCHEM: 3606</p>
+ <p>KEGG: C00312</p>
+ <p>CHEBI: 17399</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_zn2_e_boundary" name="Zinc" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: Zn</p>
+ <p>PUBCHEM: 3340</p>
+ <p>KEGG: C00038</p>
+ <p>CHEBI: 29105</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_AEP_e_boundary" name="2-Aminoethylphosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C2H7N1O3P1</p>
+ <p>PUBCHEM: 6353</p>
+ <p>KEGG: C03557</p>
+ <p>CHEBI: 15573</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hoxpac_e_boundary" name="4-Hydroxyphenylacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H7O3</p>
+ <p>PUBCHEM: 3915</p>
+ <p>KEGG: C00642</p>
+ <p>CHEBI: 18101</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_remnant1_e_boundary" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H2N2O3">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H2N2O3</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipa20Oag_e_boundary" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-11" fbc:chemicalFormula="C656H1103N2O440P4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C656H1103N2O440P4</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4_e_boundary" name="Salmochelin-S4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C42H47N3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47N3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs4fe_e_boundary" name="Salmochelin-S4-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C42H47FeN3O25</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchsx_e_boundary" name="Salmochelin-SX" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C16H20N1O11</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tag__D_e_boundary" name="D-Tagatose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H12O6</p>
+ <p>PUBCHEM: 4053</p>
+ <p>KEGG: C00795</p>
+ <p>CHEBI: 4249</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_airs_e_boundary" name="Aminoimidazole-riboside" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H13N3O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C8H13N3O4</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: phosphorylated version of C03373</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_pep_e_boundary" name="Phosphoenolpyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H2O6P</p>
+ <p>PUBCHEM: 3374</p>
+ <p>KEGG: C00074</p>
+ <p>CHEBI: 18021 44897</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_2pg_e_boundary" name="D-Glycerate-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3904</p>
+ <p>KEGG: C00631</p>
+ <p>CHEBI: 17835</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_3pg_e_boundary" name="3-Phospho-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C3H4O7P</p>
+ <p>PUBCHEM: 3497</p>
+ <p>KEGG: C00197</p>
+ <p>CHEBI: 17794</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tet_e_boundary" name="Tetrathionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O6S4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: O6S4</p>
+ <p>PUBCHEM: 5169</p>
+ <p>KEGG: C02084</p>
+ <p>CHEBI: 15226 16853</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_foam_e_boundary" name="Formamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CH3NO">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: CH3NO</p>
+ <p>PUBCHEM: 3771</p>
+ <p>KEGG: C00488</p>
+ <p>CHEBI: 16397</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tartr__D_e_boundary" name="D-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C4H4O6</p>
+ <p>PUBCHEM: 5189</p>
+ <p>KEGG: C02107</p>
+ <p>CHEBI: 15672</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4abz_e_boundary" name="4-Aminobenzoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C7H6NO2</p>
+ <p>PUBCHEM: 3847</p>
+ <p>KEGG: C00568</p>
+ <p>CHEBI: 30753</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxB_e_boundary" name="Ferrioxamine-B" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H48N6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxBfe_e_boundary" name="Ferrioxamine-B-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C25H45FeN6O8</p>
+ <p>PUBCHEM: 123851</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxE_e_boundary" name="Ferrioxamine-E" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H48N6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H48N6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxEfe_e_boundary" name="Ferrioxamine-E-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H45FeN6O9</p>
+ <p>PUBCHEM: 167864</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxG_e_boundary" name="Ferrioxamine-G" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H49N6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H49N6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_feroxGfe_e_boundary" name="Ferrioxamine-G-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C27H46FeN6O10</p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_drib_e_boundary" name="2-Deoxy-D-ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O4">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C5H10O4</p>
+ <p>PUBCHEM: 4927</p>
+ <p>KEGG: C01801</p>
+ <p>CHEBI: 28816</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_dxyl_e_boundary" name="dxyl_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8496</p>
+ <p>KEGG: C06257</p>
+ <p>CHEBI: 28354</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2fe_e_boundary" name="salchs2fe_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>KEGG: NA</p>
+ <p>CHEBI: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_rnam_e_boundary" name="rnam_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 6038</p>
+ <p>KEGG: C03150</p>
+ <p>CHEBI: 15927</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_colipaOA_e_boundary" name="colipaOA_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>KEGG: NA</p>
+ <p>CHEBI: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo4_e_boundary" name="udcpo4_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tcb_e_boundary" name="tricarballylate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: C6H5O6</p>
+ <p>PUBCHEM: 135626273</p>
+ <p>KEGG: C19806</p>
+ <p>CHEBI: 62517</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_fe3dhbzs3_e_boundary" name="fe3dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>KEGG: NA</p>
+ <p>CHEBI: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_23dhbzs3_e_boundary" name="23dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>KEGG: NA</p>
+ <p>CHEBI: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_guln__L_e_boundary" name="guln__L_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>KEGG: NA</p>
+ <p>CHEBI: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_udcpo5_e_boundary" name="udcpo5_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 0</p>
+ <p>KEGG: 0</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_4hthr_e_boundary" name="4hthr_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 8326</p>
+ <p>KEGG: C06056</p>
+ <p>CHEBI: 0</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_salchs2_e_boundary" name="salchs2_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: NA</p>
+ <p>KEGG: NA</p>
+ <p>CHEBI: NA</p>
+ </html>
+ </notes>
+ </species>
+ <species id="M_tton_e_boundary" name="tton_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>FORMULA: </p>
+ <p>PUBCHEM: 4976</p>
+ <p>KEGG: C01861</p>
+ <p>CHEBI: 15987</p>
+ </html>
+ </notes>
+ </species>
+ </listOfSpecies>
+ <listOfReactions>
+ <reaction id="R_12DGR120tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr120_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr120_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12DGR140tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12DGR141tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr141_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12DGR160tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12DGR161tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12DGR180tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12DGR181tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12PPDRtex" name=" R Propane 1 2 diol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12PPDRtpp" name=" R Propane 1 2 diol facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2037</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12PPDStex" name=" S Propane 1 2 diol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12PPDStpp" name=" S Propane 1 2 diol facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2037</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_14GLUCANabcpp" name="1 4 alpha D glucan transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_14glucan_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_14glucan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_14GLUCANtexi" name="1 4 alpha D glucan transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_14glucan_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23CAMPtex" name="23cAMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23camp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23camp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23CCMPtex" name="23cCMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23ccmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23CGMPtex" name="23cGMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cgmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cgmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23CUMPtex" name="23cUMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cump_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23DAPPAt2pp" name="2 3 diaminopropionate transport in via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dappa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23DAPPAtex" name="2 3 diaminopropionate transport via diffusion" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dappa_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23PDE2pp" name="2 3 cyclic nucleotide phosphodiesterase UMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ump_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23PDE4pp" name="2 3 cyclic nucleotide phosphodiesterase CMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23ccmp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3cmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23PDE7pp" name="2 3 cyclic nucleotide phosphodiesterase AMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23camp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_23PDE9pp" name="2 3 cyclic nucleotide phosphodiesterase GMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23cgmp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3gmp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_26DAHtex" name="meso 2 6 Diaminoheptanedioate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap__M_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap__M_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPA120tipp" name="2 Acyl sn glycero 3 phosphatidate n C120 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPA140tipp" name="2 Acyl sn glycero 3 phosphatidate n C140 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPA141tipp" name="2 Acyl sn glycero 3 phosphatidate n C141 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdec7eg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdec7eg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPA160tipp" name="2 Acyl sn glycero 3 phosphatidate n C160 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPA161tipp" name="2 Acyl sn glycero 3 phosphatidate n C161 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdec9eg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdec9eg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPA180tipp" name="2 Acyl sn glycero 3 phosphatidate n C180 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPA181tipp" name="2 Acyl sn glycero 3 phosphatidate n C181 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odec11eg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odec11eg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPE120tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C120 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPE140tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C140 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPE141tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C141 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe141_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPE160tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C160 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPE161tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C161 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPE180tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C180 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPE181tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C181 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPEAT120" name="2 acyl glycerophospho ethanolamine acyltransferase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPEAT140" name="2 acyl glycerophospho ethanolamine acyltransferase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPEAT141" name="2 acyl glycerophospho ethanolamine acyltransferase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPEAT160" name="2 acyl glycerophospho ethanolamine acyltransferase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPEAT161" name="2 acyl glycerophospho ethanolamine acyltransferase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPEAT180" name="2 acyl glycerophospho ethanolamine acyltransferase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPEAT181" name="2 acyl glycerophospho ethanolamine acyltransferase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPG120tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C120 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg120_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPG140tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C140 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPG141tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C141 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPG160tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C160 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPG161tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C161 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPG180tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C180 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPG181tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C181 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3009</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPGAT120" name="2 acyl glycerophospho glycerol acyltransferase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPGAT140" name="2 acyl glycerophospho glycerol acyltransferase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPGAT141" name="2 acyl glycerophospho glycerol acyltransferase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPGAT160" name="2 acyl glycerophospho glycerol acyltransferase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPGAT161" name="2 acyl glycerophospho glycerol acyltransferase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPGAT180" name="2 acyl glycerophospho glycerol acyltransferase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2AGPGAT181" name="2 acyl glycerophospho glycerol acyltransferase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3010</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2DGLCNRx" name="2 dehydro D gluconate reductase NADH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2DGLCNRy" name="2 dehydro D gluconate reductase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dhglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2DGULRx" name="2 dehydro L gulonate reductase NADH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dhguln_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2DGULRy" name="2 dehydro L gulonate reductase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dhguln_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2MAHMP" name="2 Methyl 4 amino 5 hydroxymethylpyrimidine diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0457 or STM1235 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mahmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_34dhpactex" name="dihydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34dhpac_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3AMPtex" name="3AMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3CMPtex" name="3CMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3cmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3GMPtex" name="3GMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM2267 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3gmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD100" name="3 hydroxyacyl acyl carrier protein dehydratase n C100 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hdecACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD120" name="3 hydroxyacyl acyl carrier protein dehydratase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddecACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tddec2eACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD121" name="3 hydroxyacyl acyl carrier protein dehydratase n C121 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcddec5eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD140" name="3 hydroxyacyl acyl carrier protein dehydratase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tmrs2eACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD141" name="3 hydroxyacyl acyl carrier protein dehydratase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcmrs7eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD160" name="3 hydroxyacyl acyl carrier protein dehydratase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpalmACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tpalm2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD161" name="3 hydroxyacyl acyl carrier protein dehydratase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcpalm9eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD180" name="3 hydroxyacyl acyl carrier protein dehydratase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hoctaACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_toctd2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD181" name="3 hydroxyacyl acyl carrier protein dehydratase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcvac11eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD40" name="3 hydroxyacyl acyl carrier protein dehydratase n C40 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3haACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD60" name="3 hydroxyacyl acyl carrier protein dehydratase n C60 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhexACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thex2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3HAD80" name="3 hydroxyacyl acyl carrier protein dehydratase n C80 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hoctACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_toct2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3KGK" name="3 keto L gulonate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3674</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhguln_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3dhgulnp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3NTD2pp" name="3 nucleotidase UMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3NTD4pp" name="3 nucleotidase CMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4403 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3cmp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3NTD7pp" name="3 nucleotidase AMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4403 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3NTD9pp" name="3 nucleotidase GMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4403</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR100" name="3 oxoacyl acyl carrier protein reductase n C100 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3odecACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hdecACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR120" name="3 oxoacyl acyl carrier protein reductase n C120 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3oddecACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hddecACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR121" name="3 oxoacyl acyl carrier protein reductase n C121 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ocddec5eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcddec5eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR140" name="3 oxoacyl acyl carrier protein reductase n C140 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3omrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR141" name="3 oxoacyl acyl carrier protein reductase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ocmrs7eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcmrs7eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR160" name="3 oxoacyl acyl carrier protein reductase n C160 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3opalmACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hpalmACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR161" name="3 oxoacyl acyl carrier protein reductase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ocpalm9eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcpalm9eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR180" name="3 oxoacyl acyl carrier protein reductase n C180 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ooctdACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hoctaACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR181" name="3 oxoacyl acyl carrier protein reductase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ocvac11eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hcvac11eACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR40" name="3 oxoacyl acyl carrier protein reductase n C40 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_actACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3haACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR60" name="3 oxoacyl acyl carrier protein reductase n C60 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ohexACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hhexACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAR80" name="3 oxoacyl acyl carrier protein reductase n C80 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1195</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ooctACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hoctACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS100" name="3 oxoacyl acyl carrier protein synthase n C100 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3odecACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS120" name="3 oxoacyl acyl carrier protein synthase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3oddecACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS121" name="3 oxoacyl acyl carrier protein synthase n C121 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdec3eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ocddec5eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS140" name="3 oxoacyl acyl carrier protein synthase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3omrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS141" name="3 oxoacyl acyl carrier protein synthase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cddec5eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ocmrs7eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS160" name="3 oxoacyl acyl carrier protein synthase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3opalmACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS161" name="3 oxoacyl acyl carrier protein synthase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ocpalm9eACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS180" name="3 oxoacyl acyl carrier protein synthase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1197 or STM2378 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ooctdACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS181" name="3 oxoacyl acyl carrier protein synthase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1197</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ocvac11eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS60" name="3 oxoacyl acyl carrier protein synthase n C60 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ohexACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3OAS80" name="3 oxoacyl acyl carrier protein synthase n C80 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hexACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ooctACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3PEPTabcpp" name="tripeptide LalaDgluMdap transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1679 and STM1745 and STM1744 and STM1743 and STM1742 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3PEPTtex" name="LalaDgluMdap tripeptide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3UMPtex" name="3UMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ump_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4HOXPACDtex" name="4 hydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpacd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpacd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4PCP" name="tetrapeptide L D carboxypeptidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4PCPpp" name="tetrapeptide L D carboxypeptidase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4PEPTabcpp" name="tetrapeptide LalaDgluMdapDala transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1746.S and STM1745 and STM1744 and STM1743 and STM1742 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4PEPTtex" name="LalaDgluMdapDala pentapeptide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_5DGLCNR" name="5 dehydro D gluconate reductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4483</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_5DGLCNt2rpp" name="5 Dehydro D gluconate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4482</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5dglcn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_5DGLCNtex" name="5 Dehydro D gluconate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM0999 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_5DOAN" name="5 deoxyadenosine nuclosidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0207</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dad__5_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5drib_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_A5PISO" name="arabinose 5 phosphate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2838.S or STM3315 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ara5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS1" name="acyl acyl carrier protein synthetase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS2" name="acyl acyl carrier protein synthetase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS3" name="acyl acyl carrier protein synthetase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS4" name="acyl acyl carrier protein synthetase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS5" name="acyl acyl carrier protein synthetase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS6" name="acyl acyl carrier protein synthetase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS7" name="acyl acyl carrier protein synthetase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS8" name="acyl acyl carrier protein synthetase n C100 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACPS9" name="acyl acyl carrier protein synthetase n C80 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_octa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AACTOOR" name="Aminoacetoneoxygen oxidoreductase deaminating flavin containing " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_aact_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AAMYL" name="alpha amylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1963</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AAMYLpp" name="alpha amylase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3664</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ABTA" name="4 aminobutyrate transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2792</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ABUTD" name="Aminobutyraldehyde dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1597</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4abutn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ABUTt2pp" name="4 aminobutyrate transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2793</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4abut_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ABUTtex" name="4 aminobutyrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACACtex" name="acetoacetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acac_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACALD" name="acetaldehyde dehydrogenase acetylating " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1749 or STM2463 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACALDtex" name="acetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACALDtpp" name="acetaldehyde reversible transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACBIPGT" name="Adenosyl cobinamide phosphate guanyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2018</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbip_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agdpcbi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACCOAC" name="acetyl CoA carboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0232 and STM2366 and STM3379 and STM3380 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACCOAL" name="acetate CoA ligase ADP forming " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0371 or STM4275 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAL1PPpp" name="N acetyl D galactosamine 1 phosphatase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAL1Ptex" name="N acetyl D galactosamine 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal1p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGALtex" name="N acetyl D galactosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAM1PPpp" name="N acetyl D glucosamine 1 phosphatase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgam1p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAM1Ptex" name="N acetyl D glucosamine 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAMK" name="N acetylglucosamine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1220</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAMT" name="UDP N acetylglucosamineundecaprenylphosphate N acetylglucosamine 1 phosphate transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3918</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_unaga_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAptspp" name="N Acetyl D glucosamine transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2433 and STM1203 and STM2431 and STM2432 ) or ( STM0685 and STM2431 and STM2432 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGAtex" name="N Acetyl D glucosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGK" name="acetylglutamate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4122</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acglu_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acg5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACGS" name="N acetylglutamate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2992</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acglu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACHBS" name="2 aceto 2 hydroxybutanoate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3795 and STM3796 ) or ( STM3901 and STM3902 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2obut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ahbut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACKr" name="acetate kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3242 or STM2337 or STM1883 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_actp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACLS" name="acetolactate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3795 and STM3796 ) or ( STM3901 and STM3902 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alac__S_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACM6PH" name="N acetylmuramate 6 phosphate hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acmum6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACMAMUT" name="UDP N acetyl D mannosaminuronic acid transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3929</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unaga_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uacmamu_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_unagamu_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACMANAptspp" name="N acetyl D mannosamine transport via PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acmanap_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACMANAtex" name="N acetyl D mannosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM0320 or STM0999 or STM1473 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmana_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACMUMtex" name="N acetylmuramate transport via diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmum_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACNAMt2pp" name="N acetylneuraminate proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3338</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acnam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACNAMtex" name="N acetylneuraminate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acnam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACNML" name="N Acetylneuraminate lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3339</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acmana_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD1f" name="acyl CoA dehydrogenase butanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_b2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD2f" name="acyl CoA dehydrogenase hexanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hx2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD3f" name="acyl CoA dehydrogenase octanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_oc2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD4f" name="acyl CoA dehydrogenase decanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dc2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD5f" name="acyl CoA dehydrogenase dodecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dd2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD6f" name="acyl CoA dehydrogenase tetradecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_td2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD7f" name="acyl CoA dehydrogenase hexadecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdd2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOAD8f" name="acyl CoA dehydrogenase octadecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0309</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_stcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_od2coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOATA" name="Acetyl CoA ACP transacylase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1196 and STM1193 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACODA" name="acetylornithine deacetylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4120</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acorn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOLIPAtex" name="arabinose modified core oligosaccharide lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acolipa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acolipa_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACONIs" name="aconitate isomerase spontaneous " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__T_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACONTa" name="aconitase half reaction A Citrate hydro lyase " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0158 or STM1712 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACONTb" name="aconitase half reaction B Isocitrate hydro lyase " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0158 or STM1712 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACOTA" name="acetylornithine transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3468 or STM1303 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acorn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acg5sa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACPS1" name="acyl carrier protein synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2577 or STM3583 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_apoACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACS" name="acetyl CoA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4275</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACSERtex" name="O Acetyl L serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACSERtpp" name="O Acetyl L serine export via facilitated transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2645 or STM1517 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACt2rpp" name="acetate reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACt4pp" name="NaAcetate symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4273</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ac_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACtex" name="Acetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADA" name="Adenosine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1463</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADCL" name="4 aminobenzoate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1198</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4adcho_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADCS" name="4 amino 4 deoxychorismate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3469 and STM1824 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4adcho_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADEt2rpp" name="adenine transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3747</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADEtex" name="adenine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADK1" name="adenylate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADK3" name="adentylate kinase GTP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADK4" name="adentylate kinase ITP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADMDC" name="adenosylmethionine decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0165</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ametam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADNCYC" name="adenylate cyclase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3939</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_camp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADNK1" name="adenosine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADNUC" name="adenosine hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0051</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADNt2pp" name="adenosine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADNt2rpp" name="adenosine transport in via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADNtex" name="adenosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADOCBLabcpp" name="Adenosylcobalamin transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbl_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADOCBLtonex" name="Adenosylcobalimin transport via ton system extermal " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbl_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbl_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADPRDP" name="ADPribose diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3185</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adprib_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADPT" name="adenine phosphoribosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0483</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADSK" name="adenylyl sulfate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2933</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aps_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_paps_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADSL1r" name="adenylsuccinate lyase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1232</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcamp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADSL2r" name="adenylosuccinate lyase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1232</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25aics_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aicar_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADSS" name="adenylosuccinate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4366</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcamp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGDC" name="N acetylglucosamine 6 phosphate deacetylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0683</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM3PA" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM3PApp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4358 or STM2450 or STM2991 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM3PH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide beta 1 4 N acetylglucosaminidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1209</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM3Pt2pp" name="GlcNAc anhMurNAc tripeptide transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0444</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM4PA" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM4PApp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2991 or STM4358 or STM2450 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM4PCP" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM4PCPpp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase periplasmic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM4PH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide beta 1 4 N acetylglucosaminidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1209</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm4p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGM4Pt2pp" name="GlcNAc anhMurNAc tetrapeptide transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0444</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGMH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl beta 1 4 N acetylglucosaminidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1209</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGMHE" name="ADP D glycero D manno heptose epimerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3710</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep__DD_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGMT" name="agmatinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3078</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_urea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGMt2pp" name="GlcNAc anhMurNAc transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0444</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGMtex" name="agmatine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPAT120" name="1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1ddecg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPAT140" name="1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1tdecg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPAT141" name="1 tetradec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1tdec7eg3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPAT160" name="1 hexadecanoyl sn glycerol 3 phosphate O acyltransferase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1hdecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPAT161" name="1 hexadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1hdec9eg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPAT180" name="1 octadecanoyl sn glycerol 3 phosphate O acyltransferase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1odecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPAT181" name="1 octadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3173</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1odec11eg3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AGPR" name="N acetyl g glutamyl phosphate reductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4121</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acg5sa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acg5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AHCYSNS" name="S adenosylhomocysteine nucleosidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0207</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rhcys_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AICART" name="phosphoribosylaminoimidazolecarboxamide formyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4176</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_aicar_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fprica_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AIRC2" name="phosphoribosylaminoimidazole carboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0533</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5caiz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AIRC3" name="phosphoribosylaminoimidazole carboxylase mutase rxn " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0534</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aizc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5caiz_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AKGDH" name="2 Oxogluterate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0154 and STM0736 and STM0737 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AKGt2rpp" name="2 oxoglutarate reversible transport via symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2654</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AKGtex" name="alpha ketoglutarate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAALAabcpp" name="D alanyl D alanine DalaDala transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alaala_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAALAr" name="D alanine D alanine ligase reversible " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0380 or STM0130 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alaala_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAALAtex" name="D alanyl D alanine DalaDala transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAGLUE" name="L alanyl gamma glutamate epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1681</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDglu_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaLglu_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAR" name="alanine racemase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4247 or STM1802 )</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALATA_D2" name="D alanine transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALATA_L" name="L alanine transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALATA_L2" name="alanine transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0934 or STM2555 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALATRS" name="Alanyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2827</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnaala_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alatrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAabcpp" name="L alanine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAt2pp" name="L alanine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAt4pp" name="L alanine transport in via sodium symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0006</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAtex" name="L alanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALDD2y" name="aldehyde dehydrogenase acetaldehyde NADP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3680</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALDD3y" name="aldehyde dehydrogenase propanal NADP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3680</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALLTAMH" name="allantoate amidohydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0527</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_alltt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_urdglyc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALLTN" name="allantoinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0523</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alltn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alltt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALLTNt2rpp" name="allantoin transport in via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0522</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alltn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALLTNtex" name="allantoin transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALLtex" name="Allose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_all__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALR2" name="aldose reductase methylglyoxal " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3165 or STM0255 or STM1288 )</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acetol_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALR4x" name="aldose reductase acetol " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4108</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acetol_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AM3PA" name="anhydrous N Acetylmuramyl tripeptide amidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AM4PA" name="anhydrous N Acetylmuramyl tetrapeptide amidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0146</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm4p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AM4PCP" name="anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhm4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMALT1" name="Amylomaltase maltotriose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMALT2" name="Amylomaltase maltotetraose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMALT3" name="Amylomaltase maltopentaose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMALT4" name="Amylomaltase maltohexaose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3513</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malthp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMANAPEr" name="N acetylmannosamine 6 phosphate epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3337</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmanap_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMANK" name="N acetyl D mannosamine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3336</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmanap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMAOTr" name="adenosylmethionine 8 amino 7 oxononanoate transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0793</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_8aonn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dann_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amob_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMMQLT8" name="S adenosylmethione2 demthylmenaquinole methyltransferase menaquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3970</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMPMS2" name="4 amino 2 methyl 5 phosphomethylpyrimidine synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4164</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_for_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMPN" name="AMP nucleosidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2009</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMPTASECG" name="alanyl aminopeptidase cys gly " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1057 or STM0316 or STM4477 or STM2536 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMPTASEPG" name="aminopeptidase pro gly " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2536 or STM4477 or STM0316 or STM1057 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_progly_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AMPtex" name="AMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ANHGMtex" name="GlcNAc anhMurNAc transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ANHMK" name="1 6 anhydrous N Acetylmuramate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1446</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acmum6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ANPRT" name="anthranilate phosphoribosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1724</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anth_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pran_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ANS" name="anthranilate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1724 and STM1723 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anth_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AOBUTDs" name="L 2 amino 3 oxobutanoate decarboxylation spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aact_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AOXSr" name="8 amino 7 oxononanoate synthase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0795</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pmcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_8aonn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AP4AH" name="Ap4A hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0088</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ap4a_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AP5AH" name="Ap5A hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0088</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ap5a_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_APRAUR" name="5 amino 6 5 phosphoribosylamino uracil reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0416</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5apru_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5aprbu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARAI" name="L arabinose isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0102</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rbl__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNR1" name="aerobactin reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_arbtn_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNR2" name="aerobactin reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_arbtn_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNR3" name="aerobactin reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arbtn_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNabcpp" name="aerobactin transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn__fe3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNexs" name="aerobactin Fe loading reaction spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arbtn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn__fe3_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNtex" name="aerobactin secretion to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arbtn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNtonex" name="aerobactin transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn__fe3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBTNtpp" name="aerobactin secretion to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBt2rpp" name="L arabinose transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3016</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arab__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBt3ipp" name="L arabinose transport via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1522</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARBtex" name="L arabinose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGAGMt7pp" name="Arginineagmatine antiport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4294</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_agm_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_agm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGDC" name="arginine decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4296 or STM3086 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_agm_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGDCpp" name="arginine decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3086</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_agm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGORNt7pp" name="arginineornithine antiporter periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1477</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGSL" name="argininosuccinate lyase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4123</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_argsuc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGSS" name="argininosuccinate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3290.S</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_citr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_argsuc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGTRS" name="Arginyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1909</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnaarg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_argtrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGabcpp" name="L arginine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2355 and STM2352 and STM2351 and STM2353 ) or ( STM0890 and STM0887 and STM0888 and STM0891 and STM0889 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGt3pp" name="L arginine transport out via proton antiport cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3066</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGtex" name="L arginine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASAD" name="aspartate semialdehyde dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3539</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_aspsa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4pasp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASCBPL" name="L ascorbate 6 phosphate lactonase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4382</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ascb6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhgulnp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASCBptspp" name="L ascorbate transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2431 and STM2432 and STM4385 and STM4384 and STM4383.S )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ascb__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ascb6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASCBtex" name="L ascorbate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ascb__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNN" name="L asparaginase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1294 or STM0847 or STM3598 )</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNNpp" name="L asparaginase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3106</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNS1" name="asparagine synthase glutamine hydrolysing " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0680</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNS2" name="asparagine synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3877</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNTRS" name="Asparaginyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1000</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnaasn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asntrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNabcpp" name="L asparagine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNt2rpp" name="L asparagine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1584</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASNtex" name="L asparagine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASO3tex" name="arsenite transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aso3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASP1DC" name="aspartate 1 decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0180</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__B_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPCT" name="aspartate carbamoyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4459 and STM4460 )</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cbasp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPK" name="aspartate kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0002 or STM4101 or STM4220 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4pasp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPO3" name="L aspartate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPO4" name="L aspartate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPO5" name="L aspartate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPO6" name="L aspartate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2641</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPT" name="L aspartase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4326</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPTA" name="aspartate transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0998</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPTRS" name="Aspartyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1901</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnaasp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asptrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPabcpp" name="L aspartate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0665 and STM0664 and STM0663 and STM0662 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPt2_2pp" name="Aspartate transport via proton symport 2 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPt2pp" name="L aspartate transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4283</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPtex" name="L aspartate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AST" name="Arginine succinyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1304</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sucarg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ATHRDHr" name="L allo threonine dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1511</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_athr__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ATPHs" name="ATP amine hydrolysis spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ATPM" name="ATP maintenance requirement" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ATPPRT" name="ATP phosphoribosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2071</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prbatp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ATPS4rpp" name="ATP synthase four protons for one ATP periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM3869 and STM3870 and STM3871 ) and ( STM3864 and STM3865 and STM3866 and STM3867 and STM3868 ) ) or ( ( STM3869 and STM3870 and STM3871 ) and ( STM3864 and STM3865 and STM3866 and STM3867 and STM3868 ) and STM3872 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BALAt2pp" name="beta alanine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__B_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__B_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BALAtex" name="beta alanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__B_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__B_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BPNT" name="3 5 bisphosphate nucleotidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BSORx" name="Biotin sulfoxide reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3644</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_btnso_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BSORy" name="Biotin sulfoxide reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3644</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_btnso_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_btn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BTS4" name="Biotin synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0794</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_s_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtbt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__5_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_btn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BUTSO3tex" name="butanesulfonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_butso3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_BUTtex" name="Butyrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CA2t3pp" name="calcium Ca2 transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1771</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ca2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ca2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CA2tex" name="calcium Ca2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ca2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CADVtpp" name="LysineCadaverine antiporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2558</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_15dap_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CAt6pp" name="calcium sodium antiporter 11 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3314</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ca2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBIAT" name="Cobinamide adenyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1718</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cbi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBItonex" name="Cobinamide transport via ton system extermal " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBIuabcpp" name="Cobinamide transport via ABC system uptake periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cbi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBL1abcpp" name="Cob 1 alamin transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbl1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbl1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBL1tonex" name="Cob 1 alamin transport via ton system extermal " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cbl1_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbl1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBPS" name="carbamoyl phosphate synthase glutamine hydrolysing " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0066 and STM0067 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CD2abcpp" name="Cadmium Cd2 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CD2t3pp" name="cadmium Cd2 transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0758 or STM4061 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cd2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CD2tex" name="cadmium Cd2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CD2tpp" name="cadmium 2 transport in via permease no H " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cd2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDAPPA120" name="CDP Diacylglycerol pyrophostatase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDAPPA140" name="CDP Diacylglycerol pyrophostatase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDAPPA141" name="CDP Diacylglycerol pyrophostatase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDAPPA160" name="CDP Diacylglycerol pyrophostatase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDAPPA161" name="CDP Diacylglycerol pyrophostatase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDAPPA180" name="CDP Diacylglycerol pyrophostatase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDAPPA181" name="CDP Diacylglycerol pyrophostatase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4064</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDPMEK" name="4 cytidine 5 diphospho 2 C methyl D erythritol kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1779</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4c2me_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2p4c2me_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CFAS160E" name="cyclopropane fatty acid synthase Phosphatidylethanolamine n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cpe160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CFAS160G" name="cyclopropane fatty acid synthase Phosphatidylglycerol n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CFAS180E" name="cyclopropane fatty acid synthase Phosphatidylethanolamine n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cpe180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CFAS180G" name="cyclopropane fatty acid synthase Phosphatidylglycerol n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1427</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpg180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CGLYabcpp" name="L Cysteinylglycine Cys Gly transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cgly_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CGLYtex" name="L Cysteinylglycine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHLabcpp" name="choline transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2162 and STM2163 and STM2164 and STM2165 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_chol_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHLtex" name="choline transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHORS" name="chorismate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2384</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3psme_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHRPL" name="Chorismate pyruvate lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4233</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4hbz_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CITL" name="Citrate lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM0621 and STM0622 and STM0623 ) or ( STM0059 and STM0060 and STM0061 ) ) and STM0620 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CITt7pp" name="Citrate transport via succinate antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0618</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CITtex" name="citrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ICITtex" name="citrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACONCtex" name="cisaconitat transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__C_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLIPAtex" name="cold lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa__cold_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa__cold_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNH120pp" name="cardiolipin hydrolase periplasm n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNH140pp" name="cardiolipin hydrolase periplasm n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNH141pp" name="cardiolipin hydrolase periplasm n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn141_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNH160pp" name="cardiolipin hydrolase periplasm n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNH161pp" name="cardiolipin hydrolase periplasm n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNH180pp" name="cardiolipin hydrolase periplasm n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNH181pp" name="cardiolipin hydrolase periplasm n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNS120pp" name="cardiolipin synthase periplasmic n C120 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNS140pp" name="cardiolipin synthase periplasmic n C140 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg140_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNS141pp" name="cardiolipin synthase periplasmic n C141 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNS160pp" name="cardiolipin synthase periplasmic n C160 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn160_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNS161pp" name="cardiolipin synthase periplasmic n C161 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn161_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNS180pp" name="cardiolipin synthase periplasmic n C180 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_clpn180_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLPNS181pp" name="cardiolipin synthase periplasmic n C181 " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLt3_2pp" name="chloride transport out via proton antiport 21 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0203 or STM1490 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cl_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cl_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CLtex" name="chloride Cl 1 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cl_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cl_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CMPN" name="CMP nucleosidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CMPtex" name="CMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CO2tex" name="CO2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CO2tpp" name="CO2 transporter via diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COBALT2abcpp" name="Cobalt Co2 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COBALT2t3pp" name="cobalt Co2 transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COBALT2tex" name="cobalt Co2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COBALT2tpp" name="cobalt transport in via permease no H " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3190 or STM3952 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COLIPAabcpp" name="core oligosaccharide lipid A transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COLIPAtex" name="core oligosaccharide lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipa_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNR1" name="coprogen Fe III reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNR2" name="coprogen Fe III reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNR3" name="coprogen Fe III reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNUtex" name="coprogen unloaded secretion extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn__un_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn__un_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNUtpp" name="coprogen unloaded secretion" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn__un_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn__un_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNabcpp" name="coprogen transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNexs" name="coprogen Fe loading reaction spontaneaous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn__un_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPGNtonex" name="Coprogen transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1204 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cpgn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPPPGO" name="coproporphyrinogen oxidase O2 required " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2451</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpppg3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CPPPGO2" name="Oxygen Independent coproporphyrinogen III oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4004</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpppg3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__5_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNBTCT" name="gamma butyrobetainyl CoA carnitine CoA transferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0072</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bbtcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gbbtn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNCAL2" name="Carnitine CoA Ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0071</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNCAR" name="carnitine CoA racemase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0070</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crnDcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNCBCT" name="crotonobetainyl CoA carnitine CoA transferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0072</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctbtcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNCDH" name="Carnityl CoA dehydratse" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0070</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctbtcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNDCAL2" name="D Carnitine CoA Ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0071</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crnDcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNDabcpp" name="D carnitine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNDt2rpp" name="D carnitine outward transport H antiport " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNabcpp" name="L carnitine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNt2rpp" name="L carnitine outward transport H antiport " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNt7pp" name="Carnitinebutyrobetaine antiporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0074</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gbbtn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gbbtn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNt8pp" name="L carnitineD carnitine antiporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0074</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_crn__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CRNtex" name="L carnitine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CS" name="citrate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0730</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CSNtex" name="cytosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CTBTCAL2" name="Crotonobetaine CoA Ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0071</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctbtcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CTBTabcpp" name="crotonobetaine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctbt_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CTBTt2rpp" name="cronobetaine outward transport H antiport " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctbt_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CTPS2" name="CTP synthase glutamine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2953</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CU1Opp" name="Cuprous Oxidase Cu1 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0168</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cu_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cu2_p" stoichiometry="4" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CU1abcpp" name="Copper Cu 1 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0498</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AU1abcpp" name="Gold Au 1 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0353</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_au_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_au_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CU2abcpp" name="Copper Cu2 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cu2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CU2tex" name="copper Cu2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM0320 or STM0999 or STM1473 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CU2tpp" name="copper transport in via permease no H " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CUtex" name="copper Cu1 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYANST" name="Cyanide sulfurtransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3525</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tsul_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tcynt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYANSTpp" name="Cyanide sulfurtransferase periplasmic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1686</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cyan_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tcynt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYANtex" name="Cyanide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cyan_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYNTtex" name="Cyanate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cynt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSDS" name="Cysteine Desulfhydrase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3161</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSDtex" name="D cysteine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSS" name="cysteine synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2430 or STM2440 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSSADS" name="L cysteine sulfinic acid desulfurase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2984</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3sala_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_so2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSTL" name="cystathionine b lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3161 or STM1557 )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cyst__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hcys__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSTRS" name="Cysteinyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0537</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnacys_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cystrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSabc2pp" name="L cysteine export via ABC system cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0956 and STM0957 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSabcpp" name="L cysteine uptake via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSIabcpp" name="L cystine uptake via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cysi__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cysi__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYStex" name="L cysteine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSItex" name="L cystine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cysi__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cysi__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYStpp" name="L cysteine export via facilitated transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2645 or STM1517 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTBO3_4pp" name="cytochrome oxidase bo3 ubiquinol 8 4 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0440 and STM0441 and STM0442 and STM0443 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTD" name="cytidine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2183</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTDH" name="Cytidine hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0661 or STM0051 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTDK2" name="cytidine kinase GTP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2122</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTDt2pp" name="cytidine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTDt2rpp" name="cytidine transport in via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTDtex" name="cytidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTK1" name="cytidylate kinase CMP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0980</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTK2" name="cytidylate kinase dCMP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0980</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAAD" name="D Amino acid dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1803</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DADA" name="Deoxyadenosine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1463</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DADK" name="deoxyadenylate kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0488</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DADNt2pp" name="deoxyadenosine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2409 or STM3113 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DADNtex" name="deoxyadenosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAGK120" name="diacylglycerol kinase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAGK140" name="diacylglycerol kinase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAGK141" name="diacylglycerol kinase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAGK160" name="diacylglycerol kinase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAGK161" name="diacylglycerol kinase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAGK180" name="diacylglycerol kinase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAGK181" name="diacylglycerol kinase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4236</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr181_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DALAt2pp" name="D alanine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DALAtex" name="D Alanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAMPtex" name="dAMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_damp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAPDC" name="diaminopimelate decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3013</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAPE" name="diaminopimelate epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3947</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap__LL_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAPabcpp" name="M diaminopimelic acid ABC transport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1954</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_26dap__M_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAPtex" name="1 5 Diaminopentane transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_15dap_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DASYN120" name="CDP diacylglycerol synthetase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DASYN140" name="CDP diacylglycerol synthetase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DASYN141" name="CDP diacylglycerol synthetase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DASYN160" name="CDP diacylglycerol synthetase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DASYN161" name="CDP diacylglycerol synthetase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DASYN180" name="CDP diacylglycerol synthetase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DASYN181" name="CDP diacylglycerol synthetase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0222</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DATPHs" name="dATP amine hydrolysis spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ditp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DB4PS" name="3 4 Dihydroxy 2 butanone 4 phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3195</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_db4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DBTS" name="dethiobiotin synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0797 or STM1489 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dann_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtbt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DCAtex" name="Decanoate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DCMPtex" name="dCMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DCTPD" name="dCTP deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2121</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DCYTD" name="deoxycytidine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2183</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DCYTt2pp" name="deoxycytidine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcyt_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DCYTtex" name="deoxycytidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDCAtexi" name="Fatty acid dodecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDGALK" name="2 dehydro 3 deoxygalactonokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3829</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dh3dgal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dh3dgal6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDGLCNtex" name="2 dehydro 3 deoxy D gluconate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDGLK" name="2 dehydro 3 deoxygluconokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3612</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2ddglcn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2ddg6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDPA" name="3 deoxy D arabino heptulosonate 7 phosphate synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2670 or STM0760 or STM1347 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dda7p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DGK1" name="deoxyguanylate kinase dGMPATP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3740</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DGMPtex" name="dGMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DGSNt2pp" name="deoxyguanosine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DGSNtex" name="deoxyguanosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHAD1" name="dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3904</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmb_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHAD2" name="Dihydroxy acid dehydratase 2 3 dihydroxy 3 methylpentanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3904</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mop_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHAtex" name="Dihydroxyacetone transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHAtpp" name="Dihydroxyacetone transport via facilitated diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBD" name="2 3 dihydro 2 3 dihydroxybenzoate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0598</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ddhb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBS" name="2 3 dihydroxybenzoate adenylate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0596</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23dhb_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhba_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHDPRy" name="dihydrodipicolinate reductase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0064</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHDPS" name="dihydrodipicolinate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2489</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_aspsa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHFR" name="dihydrofolate reductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0087</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHFS" name="dihydrofolate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2365</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHNAOT4" name="1 4 dihydroxy 2 naphthoate octaprenyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4090</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_octdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHNPA2" name="dihydroneopterin aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3206</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhnpt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6hmhpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gcald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHORD2" name="dihydoorotic acid dehydrogenase quinone8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1058</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhor__S_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHORD5" name="dihydroorotic acid menaquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1058</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhor__S_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHORTS" name="dihydroorotase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1163</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhor__S_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbasp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHPPDA2" name="diaminohydroxyphosphoribosylaminopryrimidine deaminase 25drapp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0416</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_25drapp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5apru_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHPS2" name="dihydropteroate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3295</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6hmhptpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4abz_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHPTDCs" name="4 5 dihydroxy 2 3 pentanedione cyclization spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhptd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmfurn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHQS" name="3 dehydroquinate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3486</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dda7p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhq_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHQTi" name="3 dehydroquinate dehydratase irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1358</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhq_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhsk_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DIMPtex" name="dIMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dimp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DINSt2pp" name="deoxyinosine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DINStex" name="deoxyinosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DKGLCNR1" name="2 5 diketo D gluconate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3165 or STM0255 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_25dkglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dhguln_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DKGLCNR2x" name="2 5 diketo D gluconate reductase NADH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_25dkglcn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DKGLCNR2y" name="2 5 diketo D gluconate reductase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3646</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_25dkglcn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DKMPPD" name="2 3 diketo 5 methylthio 1 phosphopentane degradation reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dkmpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2kmb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DKMPPD3" name="2 3 diketo 5 methylthio 1 phosphopentane degradation reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dkmpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2kmb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMATT" name="dimethylallyltranstransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0423</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_grdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMPPS" name="1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase dmpp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0049</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2mb4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dmpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMQMT" name="3 Dimethylubiquinonol 3 methyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2276</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2omhmbl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMSOtex" name="Dimethyl sulfoxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmso_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMStex" name="Dimethyl sulfide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dms_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dms_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DM_4HBA" name="Sink needed to allow 4 hydroxy benzoate to leave system" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hba_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hba_c_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DM_5DRIB" name="Sink needed to allow 5 deoxyribose to leave system" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5drib_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5drib_c_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DM_HMFURN" name="Sink needed to allow 4 hydroxy 5 methyl 3 2H furanone to leave system" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hmfurn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmfurn_c_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DM_OXAM" name="Sink needed to allow oxamate to leave system" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oxam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oxam_c_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DNMPPA" name="Dihydroneopterin monophosphate dephosphorylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhpmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhnpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DNTPPA" name="Dihydroneopterin triphosphate pyrophosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1900 or STM0137 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahdt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhpmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DOGULNR" name="2 3 dioxo L gulonate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3668</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23doguln_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3dhguln_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DOPAtex" name="dopamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dopa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dopa_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DPCOAK" name="dephospho CoA kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0140</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dpcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DRPA" name="deoxyribose phosphate aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4567</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dr5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSBAO1" name="DsbA protein reoxidation reaction aerobic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3997 and STM1807 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbard_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbaox_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSBAO2" name="DsbA protein reoxidation reaction anaerobic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3997 and STM1807 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbard_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbaox_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSBCGT" name="DsbCglutathione thiotransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3043</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_dsbcox_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbcrd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSBDR" name="DsbD reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM4323 and STM3915 ) or ( STM4323 and STM2649 ) )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbdox_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbdrd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSBGGT" name="DsbGglutathione thiotransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0607</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbgox_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbgrd_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthox_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSERDHr" name="D serine dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1511</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ser__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2amsa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSERt2pp" name="D serine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSERtex" name="D serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DTMPK" name="dTMP kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1200</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DTMPtex" name="dTMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DUMPtex" name="dUMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DURIK1" name="deoxyuridine kinase ATPDeoxyuridine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1750</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DURIPP" name="deoxyuridine phosphorylase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4568 or STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DURIt2pp" name="deoxyuridine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2409 or STM3113 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DURItex" name="deoxyuridine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DUTPDP" name="dUTP diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3731</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DXPRIi" name="1 deoxy D xylulose reductoisomerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0220</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2me4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DXPS" name="1 deoxy D xylulose 5 phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0422</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DXYLK" name="1 Deoxy D xylulose kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3660</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dxyl_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_D_LACt2pp" name="D lactate transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3692</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_D_LACtex" name="D lactate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_E4PD" name="Erythrose 4 phosphate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3070</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4per_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR100x" name="enoyl acyl carrier protein reductase NADH n C100 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR100y" name="enoyl acyl carrier protein reductase NADPH n C100 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR120x" name="enoyl acyl carrier protein reductase NADH n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tddec2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR120y" name="enoyl acyl carrier protein reductase NADPH n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tddec2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR121x" name="enoyl acyl carrier protein reductase NADH n C121 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cddec5eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR121y" name="enoyl acyl carrier protein reductase NADPH n C121 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cddec5eACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR140x" name="enoyl acyl carrier protein reductase NADH n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmrs2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR140y" name="enoyl acyl carrier protein reductase NADPH n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tmrs2eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR141x" name="enoyl acyl carrier protein reductase NADH n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR141y" name="enoyl acyl carrier protein reductase NADPH n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR160x" name="enoyl acyl carrier protein reductase NADH n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tpalm2eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR160y" name="enoyl acyl carrier protein reductase NADPH n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tpalm2eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR161x" name="enoyl acyl carrier protein reductase NADH n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR161y" name="enoyl acyl carrier protein reductase NADPH n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR180x" name="enoyl acyl carrier protein reductase NADH n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_toctd2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR180y" name="enoyl acyl carrier protein reductase NADPH n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_toctd2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR181x" name="enoyl acyl carrier protein reductase NADH n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR181y" name="enoyl acyl carrier protein reductase NADPH n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR40x" name="enoyl acyl carrier protein reductase NADH n C40 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_butACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR40y" name="enoyl acyl carrier protein reductase NADPH n C40 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_but2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_butACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR60x" name="enoyl acyl carrier protein reductase NADH n C60 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thex2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hexACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR60y" name="enoyl acyl carrier protein reductase NADPH n C60 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thex2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hexACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR80x" name="enoyl acyl carrier protein reductase NADH n C80 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_toct2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EAR80y" name="enoyl acyl carrier protein reductase NADPH n C80 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1700</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_toct2eACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECA4COLIPAtex" name="enterobacterial common antigen x4 core oligosaccharide lipid A transport periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca4colipa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4colipa_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECA4OALpp" name="enterobacterial common antigen x4 O antigen ligase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3713</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca4und_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4colipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECAP1pp" name="enterobacterial common antigen polymerase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_eca2und_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECAP2pp" name="enterobacterial common antigen polymerase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_eca2und_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_eca3und_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECAP3pp" name="enterobacterial common antigen polymerase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca3und_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_unagamuf_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4und_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECAtpp" name="enterobacterial common antigen transferase flippase cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3926</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamuf_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_unagamuf_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH1" name="3 hydroxyacyl CoA dehydratase 3 hydroxybutanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hbcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_b2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH2" name="3 hydroxyacyl CoA dehydratase 3 hydroxyhexanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hx2coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH3" name="3 hydroxyacyl CoA dehydratase 3 hydroxyoctanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2388 or STM3983 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hocoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oc2coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH4" name="3 hydroxyacyl CoA dehydratase 3 hydroxydecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dc2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH5" name="3 hydroxyacyl CoA dehydratase 3 hydroxydodecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dd2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH6" name="3 hydroxyacyl CoA dehydratase 3 hydroxytetradecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3htdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_td2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH7" name="3 hydroxyacyl CoA dehydratase 3 hydroxyhexadecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hhdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdd2coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ECOAH8" name="3 hydroxyacyl CoA dehydratase 3 hydroxyoctadecanoyl CoA " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hodcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_od2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EDA" name="2 dehydro 3 deoxy phosphogluconate aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1884</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddg6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EDD" name="6 phosphogluconate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1885</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddg6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EDTXS1" name="Endotoxin Synthesis lauroyl transferase " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1155</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EDTXS2" name="Endotoxin Synthesis myristoyl transferase " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1889</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EDTXS3" name="Endotoxin Synthesis palmitoleoyl ACP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2401</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo2lipid4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EDTXS4" name="Endotoxin Synthesis myristoyl transferase " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1889</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa__cold_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENLIPAtex" name="phosphoethanolamine lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enlipa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enlipa_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENO" name="enolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2952</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENTCS" name="enterochelin synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0584</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhba_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_seramp_c" stoichiometry="3" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="6" constant="true"/>
+ <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="9" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ETHAAL" name="Ethanolamine ammonia lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2457 and STM2458 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ETHAt2pp" name="ethanolamine transport in via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2460</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_etha_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_etha_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ETHAtex" name="ethanolamine transport via diffusion extracellular " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ETHSO3tex" name="ethanesulfonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ethso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ethso3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ETOHt2rpp" name="ethanol reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_etoh_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etoh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ETOHtex" name="ethanol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etoh_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_chitob_e" name="Chitobiose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chitob_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chitob_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pydxn_e" name="Pyridoxine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pydx_e" name="Pyridoxal exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_12ppd__R_e" name=" R Propane 1 2 diol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_12ppd__S_e" name=" S Propane 1 2 diol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_14glucan_e" name="1 4 alpha D glucan exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_14glucan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_14glucan_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_15dap_e" name="1 5 Diaminopentane exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_15dap_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_15dap_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_23camp_e" name="2 3 Cyclic AMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23camp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23camp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_23ccmp_e" name="2 3 Cyclic CMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23ccmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23ccmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_23cgmp_e" name="2 3 Cyclic GMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cgmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cgmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_23cump_e" name="2 3 Cyclic UMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23cump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23cump_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_23dappa_e" name="2 3 diaminopropionate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dappa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_26dap__M_e" name="meso 2 6 Diaminoheptanedioate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_26dap__M_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_26dap__M_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_2ddglcn_e" name="2 Dehydro 3 deoxy D gluconate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddglcn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_34dhpac_e" name="3 4 Dihydroxyphenylacetaldehyde exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_34dhpac_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_3amp_e" name="3 AMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3amp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3amp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_3cmp_e" name="3 cmp exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3cmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3cmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_3gmp_e" name="3 GMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3gmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3gmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_3hcinnm_e" name="3 hydroxycinnamic acid exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcinnm_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_3hpppn_e" name="3 3 hydroxy phenyl propionate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpppn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_3ump_e" name="3 UMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ump_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_4abut_e" name="4 Aminobutanoate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abut_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abut_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_4hoxpacd_e" name="4 Hydroxyphenylacetaldehyde exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpacd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpacd_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_5dglcn_e" name="5 Dehydro D gluconate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dglcn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_LalaDgluMdapDala_e" name="L alanine D glutamate meso 2 6 diaminoheptanedioate D alanine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdapDala_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdapDala_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_LalaDgluMdap_e" name="L alanine D glutamate meso 2 6 diaminoheptanedioate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDgluMdap_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ac_e" name="Acetate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acac_e" name="Acetoacetate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acac_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acald_e" name="Acetaldehyde exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acgal1p_e" name="N Acetyl D galactosamine 1 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal1p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acgal_e" name="N Acetyl D galactosamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgal_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acgam1p_e" name="N Acetyl D glucosamine 1 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam1p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acgam_e" name="N Acetyl D glucosamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acmana_e" name="N Acetyl D mannosamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmana_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmana_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acmum_e" name="N Acetylmuramate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acmum_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acmum_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acnam_e" name="N Acetylneuraminate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acnam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acnam_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acolipa_e" name="4 Amino 4 deoxy L arabinose modified core oligosaccharide lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acolipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acolipa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acser_e" name="O Acetyl L serine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acser_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acser_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ade_e" name="Adenine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ade_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_adn_e" name="Adenosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_adocbl_e" name="Adenosylcobalamin exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocbl_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ag_e" name="silver exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ag_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ag_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_agm_e" name="Agmatine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_agm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_agm_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_akg_e" name="2 Oxoglutarate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ala__B_e" name="beta Alanine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__B_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__B_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ala__D_e" name="D Alanine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ala__L_e" name="L Alanine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ala__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_alaala_e" name="D Alanyl D alanine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_all__D_e" name="D Allose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_all__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_all__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_alltn_e" name="Allantoin exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alltn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alltn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_amp_e" name="AMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_anhgm_e" name="N Acetyl D glucosamine anhydrous N Acetylmuramic acid exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_anhgm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_arab__L_e" name="L Arabinose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arab__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arab__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_arbtn_e" name="aerobactin minus Fe3 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_arbtn__fe3_e" name="Aerobactin exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbtn__fe3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arbtn__fe3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_arg__L_e" name="L Arginine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_arg__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ascb__L_e" name="L Ascorbate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ascb__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ascb__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_asn__L_e" name="L Asparagine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asn__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asn__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_aso3_e" name="arsenite exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_aso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aso3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_asp__L_e" name="L Aspartate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_asp__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_but_e" name="Butyrate n C40 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_but_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_but_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_butso3_e" name="butanesulfonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_butso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_butso3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ca2_e" name="Calcium exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ca2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ca2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cbi_e" name="Cobinamide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbi_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbi_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cbl1_e" name="Cob I alamin exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cbl1_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbl1_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cd2_e" name="Cadmium exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cd2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cd2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cgly_e" name="Cys Gly exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cgly_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_chol_e" name="Choline exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chol_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cit_e" name="Citrate exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_icit_e" name="Isocitrate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_acon__C_e" name="cisaconitate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__C_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cl_e" name="Chloride exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cl_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cl_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cmp_e" name="CMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_co2_e" name="CO2 exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cobalt2_e" name="Co2 exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_colipa_e" name="core oligosaccharide lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cpgn_e" name="coprogen exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cpgn__un_e" name="coprogen unloaded no Fe III exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cpgn__un_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpgn__un_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_crn_e" name="L Carnitine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_crn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_crn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_csn_e" name="Cytosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_csn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cu2_e" name="Cu2 exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cu_e" name="Cu exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cu_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cu_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cyan_e" name="Hydrogen cyanide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cyan_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cynt_e" name="Cyanate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cynt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cynt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cys__D_e" name="D Cysteine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cys__L_e" name="L Cysteine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cys__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cysi__L_e" name="L Cystine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cysi__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cysi__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_cytd_e" name="Cytidine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cytd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cytd_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dad__2_e" name="Deoxyadenosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_damp_e" name="dAMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_damp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dca_e" name="Decanoate n C100 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dca_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dcmp_e" name="dCMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dcyt_e" name="Deoxycytidine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcyt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ddca_e" name="Dodecanoate n C120 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dgmp_e" name="dGMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dgsn_e" name="Deoxyguanosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dgsn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dha_e" name="Dihydroxyacetone exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dha_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dha_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dimp_e" name="dIMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dimp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_din_e" name="Deoxyinosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dms_e" name="Dimethyl sulfide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dms_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dms_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dmso_e" name="Dimethyl sulfoxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmso_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dopa_e" name="Dopamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dopa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dopa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dtmp_e" name="dTMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dump_e" name="dUMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dump_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_duri_e" name="Deoxyuridine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_duri_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_eca4colipa_e" name=" enterobacterial common antigen x4 core oligosaccharide lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eca4colipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_eca4colipa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_enlipa_e" name="phosphoethanolamine KDO 2 lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enlipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enlipa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_enter_e" name="Enterochelin exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_etha_e" name="Ethanolamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etha_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ethso3_e" name="ethanesulfonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ethso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ethso3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_etoh_e" name="Ethanol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_etoh_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etoh_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_f6p_e" name="D fructose 6 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fald_e" name="Formaldehyde exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fe2_e" name="Fe2 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fe3_e" name="Fe3 exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fe3dcit_e" name="Fe III dicitrate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dcit_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dcit_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fe3dhbzs_e" name="ferric 2 3 dihydroxybenzoylserine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fe3hox_e" name="Fe III hydroxamate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fe3hox__un_e" name="Fe III hydoxamate unloaded exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox__un_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox__un_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fecrm_e" name="Ferrichrome exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fecrm__un_e" name="Ferrichrome minus Fe III exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feenter_e" name="Fe enterobactin exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feenter_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feoxam_e" name="ferroxamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feoxam__un_e" name="ferroxamine minus Fe 3 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam__un_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_for_e" name="Formate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fru_e" name="D Fructose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_frulys_e" name="fructoselysine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulys_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frulys_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fruur_e" name="D Fructuronate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fruur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fuc__L_e" name="L Fucose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fuc__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fum_e" name="Fumarate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_g1p_e" name="D Glucose 1 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_g3pc_e" name="sn Glycero 3 phosphocholine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pc_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_g3pe_e" name="sn Glycero 3 phosphoethanolamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_g3pg_e" name="Glycerophosphoglycerol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_g3pi_e" name="sn Glycero 3 phospho 1 inositol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pi_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_g3ps_e" name="Glycerophosphoserine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3ps_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_g6p_e" name="D Glucose 6 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gal1p_e" name="alpha D Galactose 1 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal1p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gal__bD_e" name="beta D Galactose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal__bD_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal__bD_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gal_e" name="D Galactose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_galct__D_e" name="D Galactarate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galct__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_galctn__D_e" name="D Galactonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_galctn__L_e" name="L Galactonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_galt_e" name="Galactitol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_galur_e" name="D Galacturonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galur_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gam6p_e" name="D Glucosamine 6 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gam_e" name="D Glucosamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gbbtn_e" name="gamma butyrobetaine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gbbtn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gdp_e" name="GDP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glc__D_e" name="D Glucose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glcn_e" name="D Gluconate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glcr_e" name="D Glucarate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcr_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glcur1p_e" name="D Glucuronate 1 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur1p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glcur_e" name="D Glucuronate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gln__L_e" name="L Glutamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gln__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glu__L_e" name="L Glutamate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gly_e" name="Glycine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glyald_e" name="D Glyceraldehyde exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyald_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glyb_e" name="Glycine betaine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glyc2p_e" name="Glycerol 2 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc2p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glyc3p_e" name="Glycerol 3 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glyc__R_e" name=" R Glycerate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc__R_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glyc_e" name="Glycerol exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_glyclt_e" name="Glycolate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gmp_e" name="GMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gsn_e" name="Guanosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gthox_e" name="Oxidized glutathione exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gthrd_e" name="Reduced glutathione exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gtp_e" name="GTP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gtp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_gua_e" name="Guanine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_h2_e" name="H2 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_h2o2_e" name="Hydrogen peroxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_h2o_e" name="H2O exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_h2s_e" name="Hydrogen sulfide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_h_e" name="H exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_hacolipa_e" name="hepta acylated core oligosaccharide lipid A E coli exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hacolipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hacolipa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_halipa_e" name="hepta acylated KDO 2 lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_halipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_halipa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_hdca_e" name="Hexadecanoate n C160 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_hdcea_e" name="hexadecenoate n C161 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_hg2_e" name="Hg2 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hg2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hg2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_his__L_e" name="L Histidine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_his__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_hom__L_e" name="L Homoserine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hom__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_hxa_e" name="Hexanoate n C60 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_hxan_e" name="Hypoxanthine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_idon__L_e" name="L Idonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_idon__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ile__L_e" name="L Isoleucine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ile__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_imp_e" name="IMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_indole_e" name="Indole exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_inost_e" name="myo Inositol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ins_e" name="Inosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_isetac_e" name="Isethionic acid exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_isetac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_isetac_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_k_e" name="K exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_kdo2lipid4_e" name="KDO 2 lipid IV A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo2lipid4_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_lac__D_e" name="D lactate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_lac__L_e" name="L Lactate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_lcts_e" name="Lactose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lcts_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lcts_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_leu__L_e" name="L Leucine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_lipa__cold_e" name="cold adapted KDO 2 lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa__cold_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa__cold_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_lipa_e" name="KDO 2 lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_lys__L_e" name="L Lysine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_lyx__L_e" name="L Lyxose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lyx__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mal__D_e" name="D Malate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mal__L_e" name="L Malate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_malt_e" name="Maltose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_malthx_e" name="Maltohexaose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_maltpt_e" name="Maltopentaose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltpt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_malttr_e" name="Maltotriose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malttr_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_maltttr_e" name="Maltotetraose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltttr_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_man6p_e" name="D Mannose 6 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_man_e" name="D Mannose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_manglyc_e" name="2 alpha D Mannosyl D glycerate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_manglyc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_manglyc_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_melib_e" name="Melibiose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_melib_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_met__D_e" name="D Methionine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_met__L_e" name="L Methionine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_metsox__R__L_e" name="L methionine R sulfoxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__R__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__R__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_metsox__S__L_e" name="L Methionine S oxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__S__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__S__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mg2_e" name="Mg exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_minohp_e" name="myo Inositol hexakisphosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_minohp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_minohp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mmet_e" name="S Methyl L methionine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmet_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mmet_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mn2_e" name="Mn2 exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mnl_e" name="D Mannitol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mnl_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mobd_e" name="Molybdate exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mobd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mobd_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_mso3_e" name="methanesulfonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mso3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_n2o_e" name="Nitrous oxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_na1_e" name="Sodium exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_nac_e" name="Nicotinate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_nh4_e" name="Ammonia exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ni2_e" name="Ni2 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_nmn_e" name="NMN exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_no2_e" name="Nitrite exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_no3_e" name="Nitrate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_no_e" name="Nitric oxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_o2_e" name="O2 exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_o2s_e" name="Superoxide anion exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2s_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ocdca_e" name="octadecanoate n C180 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ocdcea_e" name="octadecenoate n C181 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_octa_e" name="octanoate n C80 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_orn_e" name="Ornithine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_orot_e" name="Orotate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_oaa_e" name="Oxaloacetate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oaa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pacald_e" name="Phenylacetaldehyde exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pacald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pacald_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_peamn_e" name="Phenethylamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_peamn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_peamn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_phe__L_e" name="L Phenylalanine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phe__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pheme_e" name="Protoheme exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pheme_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pi_e" name="Phosphate exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pnto__R_e" name=" R Pantothenate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto__R_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pnto__R_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ppa_e" name="Propionate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ppal_e" name="Propanal exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pppn_e" name="Phenylpropanoate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ppt_e" name="Phosphonate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pro__L_e" name="L Proline exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_progly_e" name="L Prolinylglycine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_progly_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_psclys_e" name="psicoselysine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_psclys_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_psclys_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pser__L_e" name="O Phospho L serine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pser__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pser__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ptrc_e" name="Putrescine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pyr_e" name="Pyruvate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_r5p_e" name="alpha D Ribose 5 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_rib__D_e" name="D Ribose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rib__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_rmn_e" name="L Rhamnose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rmn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_sbt__D_e" name="D Sorbitol exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sbt__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ser__D_e" name="D Serine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ser__L_e" name="L Serine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_skm_e" name="Shikimate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_skm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_skm_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_so2_e" name="sulfur dioxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_so3_e" name="Sulfite exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_so4_e" name="Sulfate exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so4_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_spmd_e" name="Spermidine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_spmd_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_succ_e" name="Succinate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_sucr_e" name="Sucrose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucr_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_sulfac_e" name="sulfoacetate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sulfac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sulfac_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tartr__L_e" name="L tartrate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_taur_e" name="Taurine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_taur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_taur_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tcynt_e" name="Thiocyanate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcynt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcynt_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_thm_e" name="Thiamin exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thm_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_thr__L_e" name="L Threonine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_thrp_e" name="L Threonine O 3 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thrp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_thym_e" name="Thymine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thym_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_thymd_e" name="Thymidine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tma_e" name="Trimethylamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tma_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tma_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tmao_e" name="Trimethylamine N oxide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmao_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tmao_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tre_e" name="Trehalose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tre_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_trp__L_e" name="L Tryptophan exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trp__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tsul_e" name="Thiosulfate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ttdca_e" name="tetradecanoate n C140 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ttdcea_e" name="tetradecenoate n C141 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tungs_e" name="tungstate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tungs_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tungs_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tym_e" name="Tyramine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tym_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tym_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tyr__L_e" name="L Tyrosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyr__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tyrp_e" name="Phosphotyrosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyrp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_uacgam_e" name="UDP N acetyl D glucosamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uacgam_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_udpacgal_e" name="UDP N acetyl D galactosamine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpacgal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpacgal_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_udpg_e" name="UDPglucose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpg_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_udpgal_e" name="UDPgalactose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_udpglcur_e" name="UDP D glucuronate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpglcur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpglcur_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ump_e" name="UMP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_ura_e" name="Uracil exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_urea_e" name="Urea exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_uri_e" name="Uridine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_val__L_e" name="L Valine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_xan_e" name="Xanthine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_xmp_e" name="Xanthosine 5 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xmp_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_xtsn_e" name="Xanthosine exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_xyl__D_e" name="D Xylose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xyl__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_xylu__L_e" name="L Xylulose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_zn2_e" name="Zinc exchange" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Ec_biomass_iAF1260_core_59p81M" name="E coli biomass objective function iAF1260 core with 5981 GAM estimate" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="0.001831" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="0.5137" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="0.1537" constant="true"/>
+ <speciesReference species="M_mn2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_2ohph_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.02702" constant="true"/>
+ <speciesReference species="M_pe160_p" stoichiometry="0.04148" constant="true"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.02617" constant="true"/>
+ <speciesReference species="M_pe160_c" stoichiometry="0.02233" constant="true"/>
+ <speciesReference species="M_kdo2lipid4_e" stoichiometry="0.01945" constant="true"/>
+ <speciesReference species="M_sheme_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="0.2905" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="0.007106" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.2151" constant="true"/>
+ <speciesReference species="M_k_c" stoichiometry="0.1776" constant="true"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="0.2958" constant="true"/>
+ <speciesReference species="M_ca2_c" stoichiometry="0.004737" constant="true"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="0.1759" constant="true"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="0.2158" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="54.462" constant="true"/>
+ <speciesReference species="M_mg2_c" stoichiometry="0.007895" constant="true"/>
+ <speciesReference species="M_gly_c" stoichiometry="0.6126" constant="true"/>
+ <speciesReference species="M_pheme_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="59.984" constant="true"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="0.1379" constant="true"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="0.4505" constant="true"/>
+ <speciesReference species="M_cl_c" stoichiometry="0.004737" constant="true"/>
+ <speciesReference species="M_thf_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="0.000576" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.1441" constant="true"/>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="0.01389" constant="true"/>
+ <speciesReference species="M_his__L_c" stoichiometry="0.09474" constant="true"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="0.2211" constant="true"/>
+ <speciesReference species="M_pe161_c" stoichiometry="0.02632" constant="true"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.02617" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.1335" constant="true"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="5.5e-05" constant="true"/>
+ <speciesReference species="M_so4_c" stoichiometry="0.003948" constant="true"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="0.2411" constant="true"/>
+ <speciesReference species="M_10fthf_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="0.3432" constant="true"/>
+ <speciesReference species="M_val__L_c" stoichiometry="0.4232" constant="true"/>
+ <speciesReference species="M_mobd_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="0.2632" constant="true"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="0.05684" constant="true"/>
+ <speciesReference species="M_zn2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_dctp_c" stoichiometry="0.02702" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="0.2411" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="0.09158" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.000447" constant="true"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="0.2632" constant="true"/>
+ <speciesReference species="M_pe161_p" stoichiometry="0.04889" constant="true"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="0.011843" constant="true"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="0.2537" constant="true"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_cu2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_fe3_c" stoichiometry="0.007106" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="59.81" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="0.7739" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="59.806" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="59.81" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_F6PA" name="fructose 6 phosphate aldolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4109</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dha_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_F6PP" name="D fructose 6 phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_F6Pt6_2pp" name="Fructose 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_F6Ptex" name="fructose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FA100ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FA120ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FA140ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FA141ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FA160ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FA161ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FA80ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0403</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE100" name="fatty acid CoA thioesterase decanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE120" name="fatty acid CoA thioesterase dodecanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE140" name="fatty acid CoA thioesterase tetradecanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE141" name="fatty acid CoA thioesterase tetradecenoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdecoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE160" name="fatty acid CoA thioesterase hexadecanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE161" name="fatty acid CoA thioesterase hexadecenoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE180" name="fatty acid CoA thioesterase octadecanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_stcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE181" name="fatty acid CoA thioesterase octadecenoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_odecoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE60" name="fatty acid CoA thioesterase hexanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAE80" name="fatty acid CoA thioesterase octanoate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0464</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_octa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL100t2pp" name="fatty acid CoA ligase decanoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL120t2pp" name="fatty acid CoA ligase dodecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL140t2pp" name="fatty acid CoA ligase tetradecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL141t2pp" name="fatty acid CoA ligase tetradecenoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdecoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL160t2pp" name="fatty acid CoA ligase hexadecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL161t2pp" name="fatty acid CoA ligase hexadecenoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL180t2pp" name="fatty acid CoA ligase octadecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_stcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL181t2pp" name="fatty acid CoA ligase octadecenoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_odecoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL60t2pp" name="fatty acid CoA ligase hexanoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FACOAL80t2pp" name="fatty acid CoA ligase octanoate transport via vectoral Co A coupling " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_octa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FADRx" name="FAD reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FADRx2" name="FAD reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2947 and STM2948 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FALDtex" name="formaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FALDtpp" name="formaldehyde transport via diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fald_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FALGTHLs" name="formaldehyde glutathione ligase spontaneous " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmgth_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FBA" name="fructose bisphosphate aldolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2141 or STM3068 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FBP" name="fructose bisphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4085 or STM4415 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FCI" name="L fucose isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2976</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fcl__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FCLK" name="L fuculokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2977</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fcl__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fc1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FCLPA" name="L fuculose 1 phosphate aldolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2974 or STM2916 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fc1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lald__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FCLT" name="Ferrochelatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0489</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppp9_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pheme_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FDH4pp" name="formate dehydrogenase quinone 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM4035 and STM4036 and STM4037 ) or ( STM1570 and STM1569 and STM1568 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FDH5pp" name="Formate Dehydrogenase menaquinone 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1570 and STM1569 and STM1568 ) or ( STM4035 and STM4036 and STM4037 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE2t2pp" name="iron II transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2408</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE2tex" name="iron II transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE2tpp" name="iron 2 transport in via permease no H " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3DHBZR" name="release of Fe III from ferric 2 3 dihydroxybenzoylserine" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3DHBZSabcpp" name="ferric 2 3 dihydroxybenzoylserine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3DHBZStonex" name="ferric 2 3 dihydroxybenzoylserine transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2199 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXR1" name="Fe III hydroxamate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXR2" name="Fe III hydroxamate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXR3" name="Fe III hydroxamate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXUtex" name="Fe III hydroxamate unloaded secretion" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox__un_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox__un_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXUtpp" name="Fe III hydroxamate unloaded secretion extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox__un_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox__un_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXexs" name="Fe III hydroxamate Fe loading reaction spontaneaous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox__un_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXtonex" name="Fe III hydroxamine transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3hox_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3hox_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3Ri" name="Fe III reduction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3tex" name="iron III transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMR1" name="Ferrichrome reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMR2" name="Ferrichrome reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMR3" name="Ferrichrome reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMUtex" name="ferrichrome minus Fe secretion to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fecrm__un_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMUtpp" name="ferrichrome minus Fe secretion to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fecrm__un_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMabcpp" name="ferrichrome transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fecrm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMexs" name="ferrichrome Fe III loading reaction spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm__un_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FECRMtonex" name="ferrichrome transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fecrm_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fecrm_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTERabcpp" name="Fe enterobactin transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feenter_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feenter_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTERexs" name="enterobactin Fe III binding spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_enter_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feenter_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTERtonex" name="Fe enterobactin transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0585 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feenter_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTERtpp" name="enterochelin transport secretion " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0593</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMUtex" name="ferroxamine minus Fe3 secretion to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam__un_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMUtpp" name="ferroxamine minus Fe3 secretion to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMabcpp" name="ferroxamine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMexs" name="ferroxamine Fe3 loading reaction spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam__un_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMtonex" name="ferroxamine transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feoxam_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROpp" name="ferroxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0168</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FHL" name="Formate hydrogen lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4285 and ( STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852 ) )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FLDR" name="flavodoxin reductase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0694 and STM4084 ) or ( STM3045 and STM4084 ) )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FLVR" name="flavin reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2947 and STM2948 ) or STM3979 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FLVRx" name="flavin reductase NAD " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FMETTRS" name="Methionyl tRNA formyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3407</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mettrna_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fmettrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FMNAT" name="FMN adenylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0045</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FMNRx" name="FMN reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FMNRx2" name="FMN reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2947 and STM2948 ) or STM3979 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FORt2pp" name="formate transport via proton symport uptake only periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0974</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FORtex" name="formate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FORtppi" name="formate transport via diffusion cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0974</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRD2" name="fumarate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4340 and STM4341 and STM4342 and STM4343 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRD3" name="fumarate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4340 and STM4341 and STM4342 and STM4343 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRUK" name="fructose 1 phosphate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2205</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRULYStex" name="fructoselysine transporter via diffusion extracellular " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frulys_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frulys_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRUURtex" name="D fructuronate transport via diffusion extracellular " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fruur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRUpts2pp" name="Fructose transport via PEPPyr PTS f6p generating periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRUptspp" name="D fructose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2204 and STM2206 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_f1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FRUtex" name="D fructose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FTHFD" name="formyltetrahydrofolate deformylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1756</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FUCtex" name="L fucose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fuc__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fuc__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FUCtpp" name="L fucose transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fuc__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fuc__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FUM" name="fumarase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1468 or STM4300 or STM1469 or ( STM0761 and STM0762 ) )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FUMt2_2pp" name="Fumarate transport via proton symport 2 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FUMtex" name="Fumarate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G1PACT" name="glucosamine 1 phosphate N acetyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3862</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gam1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgam1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G1PPpp" name="Glucose 1 phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1117</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g1p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G1PTT" name="glucose 1 phosphate thymidylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3923 or STM2095 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dttp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdpglu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G1Ptex" name="D glucose 1 phosphate transport via diffusion" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G1SAT" name="glutamate 1 semialdehyde aminotransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0202</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu1sa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5aop_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G2PPpp" name="glycerol 2 phosphate phosphatase periplasmic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PAT120" name="glycerol 3 phosphate acyltransferase C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1ddecg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PAT140" name="glycerol 3 phosphate acyltransferase C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdecg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PAT141" name="glycerol 3 phosphate acyltransferase C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdec7eg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PAT160" name="glycerol 3 phosphate acyltransferase C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdecg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PAT161" name="glycerol 3 phosphate acyltransferase C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1hdec9eg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PAT180" name="glycerol 3 phosphate acyltransferase C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1odecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PAT181" name="glycerol 3 phosphate acyltransferase C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4235</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odec11eg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PCabcpp" name="sn glycerol 3 phosphocholine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pc_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pc_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PCtex" name="glycero 3 phosphocholine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PD2" name="glycerol 3 phosphate dehydrogenase NADP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3700</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PD5" name="glycerol 3 phosphate dehydrogenase ubiquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2284 and STM2285 and STM2286 ) or STM3526 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PD6" name="glycerol 3 phosphate dehydrogenase menaquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2284 and STM2285 and STM2286 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PD7" name="glycerol 3 phosphate dehydrogenase demethylmenaquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2284 and STM2285 and STM2286 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PEabcpp" name="sn glycerol 3 phosphoethanolamine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PEtex" name="glycero 3 phosphoethanolamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PGabcpp" name="sn glycerol 3 phosphoglycerol transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PGtex" name="glycerophoglycerol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PIabcpp" name="sn glycerol 3 phosphoethanolamine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pi_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PItex" name="glycero 3 phospho 1 inositol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PSabcpp" name="sn glycerol 3 phosphoserine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3ps_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3ps_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PStex" name="glycerophosphserine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3ps_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3ps_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G3PT" name="glycerol 3 phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G5SADs" name="L glutamate 5 semialdehyde dehydratase spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu5sa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G5SD" name="glutamate 5 semialdehyde dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0322</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu5sa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G6PDA" name="glucosamine 6 phosphate deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0684</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G6PDH2r" name="glucose 6 phosphate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1886</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G6PP" name="glucose 6 phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G6Pt6_2pp" name="Glucose 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G6Ptex" name="glucose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GAL1PPpp" name="D galactose 1 phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1117</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal1p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GAL1Ptex" name="D galactose 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal1p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALBDtex" name="beta D galactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal__bD_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal__bD_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALCTNLtex" name="L galactonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0999 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALCTNt2pp" name="D galactonate transport via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3827</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALCTNtex" name="D galactonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galctn__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALCTt2rpp" name="D galactarte transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2962</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_galct__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galct__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALCTtex" name="D galactarte transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galct__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALKr" name="galactokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0774 or STM2101 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALM2pp" name="aldose 1 epimerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0773</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal__bD_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALS3" name="a galactosidase melibiose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4298</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_melib_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALT1" name="galactosyltransferase I LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3719</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gicolipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gagicolipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALTtex" name="Galactitol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALURt2rpp" name="D galacturonate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3134</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galur_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALURtex" name="D galacturonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galur_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALUi" name="UTP glucose 1 phosphate uridylyltransferase irreversible " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1752 and STM2098 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALabcpp" name="D galactose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2189 and STM2190 and STM2188 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALt2pp" name="D galactose transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3091</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALtex" name="D galactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GAM6Pt6_2pp" name="D Glucosamine 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_gam6p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GAMAN6Ptex" name="D glucosamine 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GAMptspp" name="D glucosamine transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GAMtex" name="D glucosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GAPD" name="glyceraldehyde 3 phosphate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1290</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GARFT" name="phosphoribosylglycinamide formyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2500</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gar_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fgam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GART" name="GAR transformylase T" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1883</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gar_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fgam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GBBTNtex" name="gamma butyrobetaine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gbbtn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gbbtn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GDMANE" name="GDP 4 dehydro 6 deoxy D mannose epimerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2108</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpddman_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpofuc_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GDPDPK" name="GDP diphosphokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2956 or STM3742 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppgpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GDPMNH" name="GDP mannose mannosyl hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2107</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GDPMNP" name="GDP mannose phyrophosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2477</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GDPtex" name="GDP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM2267 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GF6PTA" name="glutamine fructose 6 phosphate transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3861</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GHMT2r" name="glycine hydroxymethyltransferase reversible" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2555</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GK1" name="guanylate kinase GMPATP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3740</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLBRAN2" name="1 4 alpha glucan branching enzyme glycogen bglycogen " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3538</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_bglycogen_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCATr" name="D glucose O acetyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0472</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acglc__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCDpp" name="Glucose dehydrogenase ubiquinone 8 as acceptor periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0169 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glcn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCNt2rpp" name="D gluconate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3512 or STM4482 or STM3541 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCNtex" name="D gluconate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCP" name="glycogen phosphorylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3534 or STM3514 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCP2" name="glycogen phosphorylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3514 or STM3534 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_bglycogen_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCRAL" name="5 dehydro 4 deoxyglucarate aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3249</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dh4dglc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCRD" name="glucarate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2960 or STM2961 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5dh4dglc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCRt2rpp" name="D glucarate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2962</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCRtex" name="D glucarate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcr_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCS1" name="glycogen synthase ADPGlc " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3535</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adpglc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCTR1" name="glucosyltransferase I LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3722</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_icolipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gicolipa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCTR2" name="glucosyltransferase II LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3718</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gagicolipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ggagicolipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCTR3" name="glucosyltransferase III LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3717</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ggagicolipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gggagicolipa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCUR1Ptex" name="D glucuronate 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur1p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCURt2rpp" name="D glucuronate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3134 or STM0161 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glcur_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCURtex" name="D glucuronat transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCabcpp" name="D glucose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2189 and STM2190 and STM2188 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCptspp" name="D glucose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2433 and STM1203 and STM2431 and STM2432 ) or ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 ) or ( STM2433 and STM2431 and STM2432 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCt2pp" name="D glucose transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3091</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCtex" name="glucose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLCtexi" name="D glucoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLDBRAN2" name="glycogen debranching enzyme bglycogen glycogen " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3537</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_bglycogen_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLGC" name="glucose 1 phosphate adenylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3536</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adpglc_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLNS" name="glutamine synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4007</p>
+ <p>SUBSYSTEM: Glutamate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLNTRS" name="Glutaminyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0686</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnagln_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glntrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLNabcpp" name="L glutamine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0830 and STM0829 and STM0828 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLNtex" name="L glutamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gln__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLU5K" name="glutamate 5 kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0321</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUCYS" name="gamma glutamylcysteine synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2818</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glucys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUDy" name="glutamate dehydrogenase NADP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1299</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUN" name="glutaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1525</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUNpp" name="glutaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3106</p>
+ <p>SUBSYSTEM: Glutamate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUPRT" name="glutamine phosphoribosyldiphosphate amidotransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2362</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pram_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUR" name="glutamate racemase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4131</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUSy" name="glutamate synthase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3330 and STM3331 )</p>
+ <p>SUBSYSTEM: Glutamate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUTRR" name="glutamyl tRNA reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1777</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glutrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trnaglu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu1sa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUTRS" name="Glutamyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2415</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnaglu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glutrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUabcpp" name="L glutamate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0665 and STM0664 and STM0663 and STM0662 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUt2rpp" name="L glutamate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4283</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUt4pp" name="Naglutamate symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3746</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLUtex" name="L glutamate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLXCL" name="glyoxalate carboligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0517</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glx_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYALDtex" name="Glyceraldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyald_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYALDtpp" name="Glyceraldehyde facilitated diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4087</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYAT" name="glycine C acetyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3709</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYBabcpp" name="Glycine betaine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2162 and STM2163 and STM2164 and STM2165 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYBtex" name="Glycine betaine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYC2Ptex" name="Glycerol 2 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc2p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc2p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYC3Pabcpp" name="sn Glycerol 3 phosphate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYC3Pt6pp" name="Glycerol 3 phosphate phosphate antiporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2283</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYC3Ptex" name="Glycerol 3 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCAt2rpp" name="D glycerate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2962</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCAtex" name="D glycerate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc__R_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc__R_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCDx" name="Glycerol dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4108 or STM3529 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dha_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCK" name="glycerate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2959 or STM2492 or STM3247 or STM0525 )</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCK2" name="glycerate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3247</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCL" name="Glycine Cleavage System" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3054 and STM3053 and STM3055 and STM0154 )</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCLTDx" name="Glycolate dehydrogenase NAD " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCLTDy" name="Glycolate dehydrogenase NADP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
+ <p>SUBSYSTEM: Glyoxylate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCLTt2rpp" name="glycolate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3692</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCLTt4pp" name="glycolate transport via sodium symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4273</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCLTtex" name="glycolate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyclt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCTO2" name="Glycolate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1620</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCTO3" name="Glycolate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1620</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCTO4" name="Glycolate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1620</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCtex" name="glycerol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYCtpp" name="glycerol transport via channel periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( s0001 or STM4087 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYK" name="glycerol kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4086</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYOX" name="hydroxyacylglutathione hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0261</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lgt__S_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYOX3" name="glyoxalase III" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYTRS" name="Glycyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3655 and STM3656 )</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnagly_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glytrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYt2pp" name="glycine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4398</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gly_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYtex" name="Glycine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GMAND" name="GDP D mannose dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2109</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpddman_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GMHEPAT" name="D glycero D manno hepose 1 phosphate adenyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3200</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmhep1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adphep__DD_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GMHEPK" name="D glycero D manno heptose 7 phosphate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3200</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmhep7p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gmhep17bp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GMHEPPA" name="D glycero D manno heptose 1 7 bisphosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0248</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gmhep17bp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmhep1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GMPR" name="GMP reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0141</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GMPS2" name="GMP synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2510</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GMPtex" name="GMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GND" name="phosphogluconate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2081</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GNK" name="gluconokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4485 or STM3542 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GOFUCR" name="GDP 4 oxo L fucose reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2108</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpofuc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdpfuc_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA1" name="Glycerophosphodiester phosphodiesterase Glycerophosphocholine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_chol_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA1pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphocholine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pc_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chol_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA2" name="Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_etha_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA2pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_etha_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA3" name="Glycerophosphodiester phosphodiesterase Glycerophosphoserine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3ps_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA3pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoserine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3ps_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA4" name="Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA4pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA5" name="Glycerophosphodiester phosphodiesterase Glycerophosphoinositol " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3553</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GPDDA5pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoinositol " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2282</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_inost_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GRTT" name="geranyltranstransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0423</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_grdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GRXR" name="glutaredoxin reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3702 or STM0872 or STM1433 or STM1165 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GSNK" name="guanosine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0491</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GSNt2pp" name="guanosine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GSNtex" name="guanosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gsn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GSPMDA" name="Glutathionylspermidine amidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3139</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtspmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GSPMDS" name="Glutathionylspermidine synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3139</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtspmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTHOXtex" name="glutathione ox transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTHOr" name="glutathione oxidoreductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3597</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTHRDHpp" name="glutathione hydralase periplasmic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3551</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cgly_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTHRDabc2pp" name="glutathione export via ABC system cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0956 and STM0957 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTHRDabcpp" name="Reduced glutathione via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0848 and STM0849 and STM0850 and STM0851 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTHRDtex" name="glutathione transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTHS" name="glutathione synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3095</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glucys_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTPCI" name="GTP cyclohydrolase I" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2193</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahdt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTPCII2" name="GTP cyclohydrolase II 25drapp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1711</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_25drapp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTPDPDP" name="guanosine 5 triphosphate 3 diphosphate diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3913</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdptp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppgpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTPDPK" name="GTP diphosphokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2956</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdptp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTPHs" name="GTP amine hydrolysis spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GTPtex" name="GTP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gtp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gtp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GUAPRT" name="guanine phosphoribosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0317 or STM0170 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GUAt2pp" name="guanine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3747</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GUAtex" name="Guanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GUAtpp" name="Guanine transport via diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gua_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GUR1PPpp" name="Glucuronate 1 phosphate phosphatase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur1p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2O2tex" name="hydrogen peroxide transport via diffusion external " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2Otex" name="H2O transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 or s0001 or STM4016 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2Otpp" name="H2O transport via diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2SO" name="Hydrogen sulfide oxidation" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_so4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2St1pp" name="h2s transport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2Stex" name="h2s transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2s_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2tex" name="hydrogen transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_H2tpp" name="hydrogen transport diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD1i" name="3 hydroxyacyl CoA dehydrogenase acetoacetyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hbcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aacoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD2i" name="3 hydroxyacyl CoA dehydrogenase 3 oxohexanoyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hhcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ohcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD3i" name="3 hydroxyacyl CoA dehydrogenase 3 oxooctanoyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2388 or STM3983 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hocoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3oocoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD4i" name="3 hydroxyacyl CoA dehydrogenase 3 oxodecanoyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3odcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD5i" name="3 hydroxyacyl CoA dehydrogenase 3 oxododecanoyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hddcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3oddcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD6i" name="3 hydroxyacyl CoA dehydrogenase 3 oxotetradecanoyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3htdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3otdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD7i" name="3 hydroxyacyl CoA dehydrogenase 3 oxohexadecanoyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hhdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ohdcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HACD8i" name="3 hydroxyacyl CoA dehydrogenase 3 oxooctadecanoyl CoA " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3hodcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3oodcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HBZOPT" name="Hydroxybenzoate octaprenyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4234</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hbz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_octdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ophb_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HCINNMtex" name="3 hydroxycinnamic acid transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hcinnm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hcinnm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HCO3E" name="HCO3 equilibration reaction" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0171</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HDCAtexi" name="Hexadecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HDCEAtexi" name="Hexadecenoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HDCOAI" name="hexadecenoyl coa cis trans isomerization" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3983</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdd2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEMEOS" name="Heme O synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0439</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pheme_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hemeO_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEPK1" name="LPS heptose kinase I LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3721</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hhlipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phhlipa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEPK2" name="LPS heptose kinase II LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3716</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hphhlipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phphhlipa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEPT1" name="heptosyltransferase I LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3712</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hlipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEPT2" name="heptosyltransferase II LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3711</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hlipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hhlipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEPT3" name="heptosyltransferase III LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3723</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phhlipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hphhlipa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEPT4" name="heptosyltransferase IV LPS core synthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3714</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gggagicolipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HETZK" name="hydroxyethylthiazole kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2147</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4mhetz_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4mpetz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEX1" name="hexokinase D glucoseATP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2403</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEX4" name="hexokinase D mannoseATP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEX7" name="hexokinase D fructoseATP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0393</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fru_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HG2abcpp" name="Mercury Hg2 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hg2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hg2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HG2tex" name="mercury Hg2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hg2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hg2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HISTD" name="histidinol dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2072</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_histd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HISTP" name="histidinol phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2074</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hisp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_histd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HISTRS" name="Histidyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2522</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnahis_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_histrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HISabcpp" name="L histidine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2354 and STM2352 and STM2351 and STM2353 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_his__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HISt2rpp" name="L histidine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0150</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_his__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HIStex" name="L histidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_his__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HMBS" name="hydroxymethylbilane synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3938</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppbng_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hmbil_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="4" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HMPK1" name="hydroxymethylpyrimidine kinase ATP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2146 or STM2435 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4ahmmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HOMt2pp" name="L homoserineserine efflux via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0832 or STM3960 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hom__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HOMtex" name="L homoserine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hom__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hom__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HPPK2" name="6 hydroxymethyl dihydropterin pyrophosphokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0183</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6hmhpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6hmhptpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HPPPNtex" name="3 3 hydroxyphenyl propionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hpppn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3hpppn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HPYRI" name="hydroxypyruvate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0518</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hpyr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HPYRRx" name="Hydroxypyruvate reductase NADH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1135 or STM3646 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hpyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HPYRRy" name="Hydroxypyruvate reductase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hpyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HSDy" name="homoserine dehydrogenase NADPH " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4101 or STM0002 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_aspsa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HSK" name="homoserine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0003</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phom_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HSST" name="homoserine O succinyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4182</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_suchms_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HSTPT" name="histidinol phosphate transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2073</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_imacp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hisp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HXAtex" name="Hexanoate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxa_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HXPRT" name="hypoxanthine phosphoribosyltransferase Hypoxanthine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0317 or STM0170 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HYPOE" name="hypothetical enyme" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HYXNtex" name="Hypoxanthine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HYXNtpp" name="Hypoxanthine transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hxan_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Htex" name="proton transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ICDHyr" name="isocitrate dehydrogenase NADP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1238</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ICHORS" name="isochorismate synthase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2310</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ICHORSi" name="Isochorismate Synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0595 or STM2310 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ICHORT" name="isochorismatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0597</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23ddhb_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ICL" name="Isocitrate lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4184</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IDOND" name="L idonate 5 dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4484</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IDOND2" name="L indonate 5 dehydrogenase NADP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4484</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IDONt2rpp" name="L idonate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4482</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_idon__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IDONtex" name="L idonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_idon__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idon__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IG3PS" name="Imidazole glycerol 3 phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2075 and STM2077 )</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prlp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_aicar_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_eig3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IGPDH" name="imidazoleglycerol phosphate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2074</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_eig3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_imacp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IGPS" name="indole 3 glycerol phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1725</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2cpr5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3ig3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ILETA" name="isoleucine transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3903</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3mop_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ILETRS" name="Isoleucyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0046</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnaile_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_iletrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ILEabcpp" name="L isoleucine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ILEt2rpp" name="L isoleucine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ILEtex" name="L isoleucine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ile__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ile__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IMPC" name="IMP cyclohydrolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4176</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fprica_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IMPD" name="IMP dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2511</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IMPtex" name="IMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_imp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INDOLEt2pp" name="Indole transport via proton symport irreversible periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3390 and STM3391 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_indole_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INDOLEt2rpp" name="Indole transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3279</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_indole_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INDOLEtex" name="Indole transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_indole_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_indole_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INSH" name="Inosine hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0051</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INSK" name="insosine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0491</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INSTtex" name="inositol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_inost_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INSt2pp" name="inosine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3113</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INSt2rpp" name="inosine transport in via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INStex" name="inosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ins_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IPDDI" name="isopentenyl diphosphate D isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3039</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IPDPS" name="1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase ipdp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0049</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2mb4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IPMD" name="3 isopropylmalate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0112</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3c2hmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3c4mop_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IPPMIa" name="3 isopropylmalate dehydratase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0110 and STM0111 ) or ( STM0329 and STM0330 ) )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c2hmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ippm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IPPMIb" name="2 isopropylmalate hydratase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0110 and STM0111 ) or ( STM0329 and STM0330 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ippm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3c3hmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_IPPS" name="2 isopropylmalate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0113</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3c3hmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ISETACtex" name="isethionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_isetac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_isetac_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_K2L4Aabcpp" name="KDO 2 lipid IV A transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_K2L4Atex" name="KDO 2 lipid IV A transport via vector periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo2lipid4_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo2lipid4_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KARA1" name="ketol acid reductoisomerase 2 3 dihydroxy 3 methylbutanoate " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3909</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhmb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alac__S_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KARA2" name="ketol acid reductoisomerase 2 Acetolactate " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3909</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2ahbut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAS14" name="beta ketoacyl ACP synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_actACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAS15" name="beta ketoacyl ACP synthase 2 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1193</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_actACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT1" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_aacoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT2" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ohcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT3" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3oocoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT4" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3odcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT5" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3oddcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT6" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3otdcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT7" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ohdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KAT8" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3oodcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KDOCT2" name="3 deoxy manno octulosonate cytidylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0988</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KDOPP" name="3 deoxy manno octulosonate 8 phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3316</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdo8p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KDOPS" name="3 deoxy D manno octulosonic acid 8 phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1772</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ara5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdo8p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_KG6PDC" name="3 keto L gulonate 6 phosphate decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4386 or STM3675 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3dhgulnp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Kabcpp" name="Potassium ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0706 and STM0705 and STM0704 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Kt2pp" name="potassium transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3880 or ( STM1695 and STM3409 and STM3986 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Kt3pp" name="potassium transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3457 or STM0086 or STM1771 or STM0866 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Ktex" name="potassium transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_k_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LA4NTpp" name="4 amino 4 deoxy L arabinotransferase LPS lipid A modification periplasmic face of membrane " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2301</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uLa4n_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acolipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LADGMDH" name="L alanyl gamma D glutamyl meso diaminopimelate hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1680</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_LalaDglu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LALDO2x" name="D LactaldehydeNAD 1 oxidoreductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4108</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lald__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LALGP" name="L alanyl gamma L glutamate peptidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0316</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaLglu_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LCARR" name="lacaldehyde reductase R propane 1 2 diol forming " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lald__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LCARS" name="lacaldehyde reductase S propane 1 2 diol forming " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2973</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lald__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LCTStex" name="Lactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lcts_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lcts_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LDH_D" name="D lactate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2167 or STM1647 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LDH_D2" name="D lactate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2167</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LEUTAi" name="leucine transaminase irreversible " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3903 or STM4248 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4mop_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LEUTRS" name="Leucyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0648</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnaleu_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_leutrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LEUabcpp" name="L leucine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 ) or ( STM3560 and STM3561 and STM3563 and STM3564 and STM3562 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LEUt2rpp" name="L leucine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LEUtex" name="L leucine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_leu__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LGTHL" name="lactoylglutathione lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1435 or STM0235 )</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lgt__S_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LIPACabcpp" name="lipid cold A transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipa__cold_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa__cold_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LIPAabcpp" name="lipid A transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LIPAtex" name="lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipa_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPADSS" name="Lipid A disaccaride synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0229</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_u23ga_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipidX_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipidAds_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1A120pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1ddecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1A140pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1tdecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1A141pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1tdec7eg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1A160pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1hdecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1A161pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1hdec9eg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1A180pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1odecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1A181pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1odec11eg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1E120pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe120_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1E140pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1E141pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1E160pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1E161pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1E180pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpe180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1E181pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1G120pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg120_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1G140pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1G141pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1G160pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1G161pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1G180pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL1G181pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0506</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_1agpg181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2A120" name="Lysophospholipase L2 2 acylglycerophosphotidate n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ddecg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2A140" name="Lysophospholipase L2 2 acylglycerophosphotidate n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2tdecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2A141" name="Lysophospholipase L2 2 acylglycerophosphotidate n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2tdec7eg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2A160" name="Lysophospholipase L2 2 acylglycerophosphotidate n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdecg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2A161" name="Lysophospholipase L2 2 acylglycerophosphotidate n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hdec9eg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2A180" name="Lysophospholipase L2 2 acylglycerophosphotidate n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2odecg3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2A181" name="Lysophospholipase L2 2 acylglycerophosphotidate n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2odec11eg3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE120" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE140" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE141" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE160" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE161" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE180" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_apg180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATE181" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG120" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG140" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG141" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG160" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG161" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG180" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2ATG181" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2E120" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2E140" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2E141" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2E160" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2E161" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2E180" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2E181" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2G120" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2G140" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2G141" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2G160" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2G161" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2G180" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LPLIPAL2G181" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3961</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LSERDHr" name="L serine dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1511</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2amsa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYSDC" name="lysine decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0234 or STM2559 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_15dap_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYSTRS" name="Lysyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3040</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnalys_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lystrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYSabcpp" name="L lysine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2355 and STM2352 and STM2351 and STM2353 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYSt2pp" name="L lysine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2200</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYSt3pp" name="L lysine transport out via proton antiport cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3066</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYStex" name="L lysine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lys__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYXI" name="Lyxose isomerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4046</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYXt2pp" name="L Lyxose transport via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4050</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lyx__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lyx__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LYXtex" name="L Lyxose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lyx__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lyx__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_L_LACD2" name="L Lactate dehydrogenase ubiquinone " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3694</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_L_LACD3" name="L Lactate dehydrogenase menaquinone " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3694</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_L_LACt2rpp" name="L lactate reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3692</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_L_LACtex" name="L lactate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_M1PD" name="mannitol 1 phosphate 5 dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3686</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MACPD" name="Malonyl ACP decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2378</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALDt2_2pp" name="D Malate transport via proton symport 2 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALDtex" name="D Malate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALS" name="malate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4183</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTATr" name="maltose O acetyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0472</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acmalt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTHXabcpp" name="maltohexaose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malthx_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTHXtexi" name="maltohexaose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malthx_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTPTabcpp" name="maltopentaose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTPTtexi" name="maltopentaoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltpt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTTRabcpp" name="Maltotriose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTTRtexi" name="Maltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malttr_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTTTRabcpp" name="maltotetraose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltttr_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTTTRtexi" name="maltotetraoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_maltttr_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTabcpp" name="maltose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malt_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTptspp" name="maltose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2433 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malt_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malt6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALTtexi" name="maltoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4231</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALt2_2pp" name="Malate transport via proton symport 2 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_mal__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALtex" name="Malate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mal__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MAN6PI" name="mannose 6 phosphate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1467</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MAN6Pt6_2pp" name="Mannose 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3787</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MAN6Ptex" name="Mannose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MANGLYCtex" name="2 O alpha mannosyl D glycerate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_manglyc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_manglyc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MANptspp" name="D mannose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_man_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MANtex" name="D mannose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCITD" name="2 methylcitrate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0370</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mcit_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2mcacn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCITL2" name="methylisocitrate lyase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0368</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_micit_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCITS" name="2 methylcitrate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0369</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2mcit_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCOATA" name="Malonyl CoA ACP transacylase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1196 and STM1194 )</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCPST" name="3 mercaptopyruvate sulfurtransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2533</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cyan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mercppyr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tcynt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCTP1App" name="murein crosslinking transpeptidase 1A A2pm D ala periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0122 or STM0640 or STM0190 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCTP1Bpp" name="murein crosslinking transpeptidase 1B A2pm A2pm periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0190 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein5px3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MCTP2App" name="murein crosslinking transpeptidase 1A A2pm D ala periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0122 or STM0640 or STM3493 or STM0190 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p5p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5px4px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDCP1pp" name="murein D D carboxypeptidase murein5px4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDCP2pp" name="murein D D carboxypeptidase murein5px4px4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px4px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDCP3pp" name="murein D D carboxypeptidase murein5p5p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDCP4pp" name="murein D D carboxypeptidase murein5p4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein5p4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDCP5pp" name="murein D D carboxypeptidase murein5p3p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein5p3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDEP1pp" name="murein D D endopeptidase murein4px4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein4px4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDEP2pp" name="murein D D endopeptidase murein3px4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein3px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDEP3pp" name="murein D D endopeptidase murein5px4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p4p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDDEP4pp" name="murein D D endopeptidase murein4px4px4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4px4px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4p4p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDH" name="malate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3359</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MDRPD" name="5 Methylthio 5 deoxy D ribulose 1 phosphate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mdru1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dkmpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ME1" name="malic enzyme NAD " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1566</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ME2" name="malic enzyme NADP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2472</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MECDPDH2" name="2C methyl D erythritol 2 4 cyclodiphosphate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2523</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2mecdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2mb4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MECDPS" name="2 C methyl D erythritol 2 4 cyclodiphosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2929</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2p4c2me_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2mecdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MELIBt2pp" name="melibiose transport in via symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4299</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_melib_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_melib_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MELIBt3ipp" name="melibiose transport in via antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1522</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_melib_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_melib_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MELIBtex" name="melibiose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_melib_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_melib_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MEPCT" name="2 C methyl D erythritol 4 phosphate cytidylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2930</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2me4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4c2me_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METAT" name="methionine adenosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3090</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METDabcpp" name="D methionine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0246 and STM0247 and STM0245 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_met__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METDtex" name="D methionine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METOX1s" name="methionine oxidation spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_metsox__S__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METOX2s" name="methionine oxidation 2 spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__R__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METS" name="methionine synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4188.S or STM3965 )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hcys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METSOX1abcpp" name="L methionine S oxide transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__S__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__S__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METSOX1tex" name="L methionine S oxide diffusion extracellular " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__S__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__S__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METSOX2abcpp" name="L methionine R oxide transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_metsox__R__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__R__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METSOX2tex" name="L methionine R oxide diffusion extracellular " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__R__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_metsox__R__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METSOXR1" name="L methionine S oxide reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM4408 and STM2649 ) or ( STM4408 and STM3915 ) )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_metsox__S__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METSOXR2" name="L methionine R sulfoxide reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1291 and STM2649 ) or ( STM1291 and STM3915 ) )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_metsox__R__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METTRS" name="Methionyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2155</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnamet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mettrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METabcpp" name="L methionine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0246 and STM0247 and STM0245 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_METtex" name="L methionine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_met__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_met__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MG2t3_2pp" name="magnesium Mg2 transport inout via proton antiport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_mg2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MG2tex" name="magnesium Mg2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MG2tpp" name="magnesium 2 transport in via diffusion" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3952</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MGSA" name="methylglyoxal synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1076</p>
+ <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MI1PP" name="myo inositol 1 phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2546</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mi1p__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MICITD" name="2 methylisocitrate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0158</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2mcacn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_micit_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MINOHPtexi" name="myo inositol phosphate transport via diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_minohp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_minohp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLDCP1App" name="murein L D carboxypeptidase murein5px4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein3px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLDCP1Bpp" name="murein L D carboxypeptidase murein4p4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLDCP2App" name="murein L D carboxypeptidase murein5p5p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLDCP2Bpp" name="murein L D carboxypeptidase murein4p3p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein3p3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLDCP3App" name="murein L D carboxypeptidase murein5px3p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein3px3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLDEP1pp" name="murein L D endopeptidase murein3px3p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein3px3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein3p3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLDEP2pp" name="murein L D endopeptidase murein5px3p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5px3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein5p3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTG1" name="Maltodextrin glucosidase maltotriose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTG2" name="Maltodextrin glucosidase maltotetraose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTG3" name="Maltodextrin glucosidase maltopentaose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTG4" name="Maltodextrin glucosidase maltohexaose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTG5" name="Maltodextrin glucosidase maltoheptaose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0401</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTGY1pp" name="murein lytic transglycosylase murein4p4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTGY2pp" name="murein lytic transglycosylase murein4p3p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTGY3pp" name="murein lytic transglycosylase murein3p3p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein3p3p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_anhgm3p_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTGY4pp" name="murein lytic transglycosylase murein4px4p4p periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein4px4p4p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_murein4px4p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTP1" name="Maltodextrin phosphorylase maltopentaose " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3514</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTP2" name="Maltodextrin phosphorylase maltohexaose " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3514</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MLTP3" name="Maltodextrin phosphorylase maltoheptaose " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3514</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_malthp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MME" name="methylmalonyl CoA epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmcoa__R_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mmcoa__S_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MMETtex" name="S methyl L methionine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mmet_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mmet_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MN2t3pp" name="manganese Mn2 transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MN2tpp" name="manganese transport in via permease no H " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MN6PP" name="mannose 6 phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MNLptspp" name="mannitol transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3685 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mnl_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mnl1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MNLtex" name="mannitol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mnl_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mnl_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MNt2pp" name="manganese Mn2 transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2408</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MNtex" name="Manganese Mn2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MOAT" name="3 deoxy D manno octulosonic acid transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3724</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipidA_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_kdolipid4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MOAT2" name="3 deoxy D manno octulosonic acid transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3724</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kdolipid4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MOAT3C" name="3 deoxy D manno octulosonic acid transferase III LPS core biosynthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3715</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phphhlipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_kphphhlipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MOBDabcpp" name="molybdate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2441 and STM2444 and STM2443 and STM2442 ) or ( STM0781 and STM0782 and STM0783 ) or ( STM2441 and STM2443 and STM2442 and STM4063 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mobd_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mobd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MOBDtex" name="molybdate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mobd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mobd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MOHMT" name="3 methyl 2 oxobutanoate hydroxymethyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0182</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dhp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MPTG" name="murein polymerizing transglycosylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2531 or STM0190 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uaagmda_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_udcpdp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MPTG2" name="murein polymerizing transglycosylase 2 three linked units " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0190 or STM2531 or STM3493 )</p>
+ <p>SUBSYSTEM: Murein Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uaagmda_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein5p5p5p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MSO3tex" name="methanesulfonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mso3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mso3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MTAN" name="methylthioadenosine nucleosidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0207</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mta_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5mtr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MTHFC" name="methenyltetrahydrofolate cyclohydrolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0542</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_methf_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MTHFD" name="methylenetetrahydrofolate dehydrogenase NADP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0542</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_methf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MTHFR2" name="5 10 methylenetetrahydrofolate reductase NADH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4105</p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5mthf_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MTRI" name="5 methylthioribose 1 phosphate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5mdr1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5mdru1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MTRK" name="5 methylthioribose kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5mtr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5mdr1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MTRPOX" name="N methyltryptophan oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1160</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_Nmtrp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_N2Otex" name="nitrious oxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_N2Otpp" name="nitrious oxide transport diffusion " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_n2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_n2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NACODA" name="N acetylornithine deacetylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4120</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acg5sa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu5sa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NACtex" name="Nicotinic acid transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NACtpp" name="Nicotinic acid uptake periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nac_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADDP" name="NAD diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2427 or STM4166 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADH10" name="NADH dehydrogenase menaquinone 8 0 protons " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1211</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADH16pp" name="NADH dehydrogenase ubiquinone 8 3 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADH17pp" name="NADH dehydrogenase menaquinone 8 3 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADH18pp" name="NADH dehydrogenase demethylmenaquinone 8 3 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADH5" name="NADH dehydrogenase ubiquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1211</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADH9" name="NADH dehydrogenase demethylmenaquinone 8 0 protons " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1211</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADK" name="NAD kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2683</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADN" name="NAD nucleosidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adprib_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADPHQR2" name="NADPH Quinone Reductase Ubiquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3179</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADPHQR3" name="NADPH Quinone Reductase Menaquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3179</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADPHQR4" name="NADPH Quinone Reductase 2 Demethylmenaquinone 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3179</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADPPPS" name="NADP phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADS1" name="NAD synthase nh3 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1310</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dnad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NADTRHD" name="NAD transhydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4126 or ( STM1480 and STM1479 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NAMNPP" name="nicotinic acid mononucleotide pyrophosphorylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1004</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NAt3_1p5pp" name="sodium proton antiporter HNA is 15 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1806</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NAt3_2pp" name="sodium proton antiporter HNA is 2 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0039</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NAtex" name="sodium transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK1" name="nucleoside diphosphate kinase ATPGDP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK2" name="nucleoside diphosphate kinase ATPUDP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK3" name="nucleoside diphosphate kinase ATPCDP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK4" name="nucleoside diphosphate kinase ATPdTDP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dttp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK5" name="nucleoside diphosphate kinase ATPdGDP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK6" name="nucleoside diphosphate kinase ATPdUDP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK7" name="nucleoside diphosphate kinase ATPdCDP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NDPK8" name="nucleoside diphosphate kinase ATPdADP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NH4tex" name="ammonia transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NH4tpp" name="ammonia reversible transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( s0001 or STM0463 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NHFRBO" name="NADHflavorubredoxin oxidoreductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2840 and STM2841 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_n2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NI2abcpp" name="Nickle Ni2 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NI2t3pp" name="nickle Ni2 transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NI2tex" name="nickel transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NMNAT" name="nicotinamide nucleotide adenylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0645 or STM4580.S )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NMNDA" name="nicotinamide nucleotide amidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NMNN" name="NMN nucleosidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NMNPtpp" name="NMN permease periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0757</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NMNt7pp" name="NMN transport via NMN glycohydrolase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NMNtex" name="NMN transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nmn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NNAM" name="nicotinamidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1293</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NNATr" name="nicotinate nucleotide adenylyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0645</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dnad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NNDPR" name="nicotinate nucleotide diphosphorylase carboxylating " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0145</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_quln_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO2t2rpp" name="nitrite transport in via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1765 or STM3476 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO2tex" name="nitrite transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO3R1bpp" name="Nitrate reductase Ubiquinol 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2256 and STM2259 and STM2255 and STM2258 and STM2257 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO3R1pp" name="Nitrate reductase Ubiquinol 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1580 and STM1579 and STM1578 and STM1577 ) or ( STM1764 and STM1763 and STM1762 and STM1761 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO3R2bpp" name="Nitrate reductase Menaquinol 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2255 and STM2256 and STM2259 and STM2260 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO3R2pp" name="Nitrate reductase Menaquinol 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1580 and STM1579 and STM1578 and STM1577 ) or ( STM1764 and STM1763 and STM1762 and STM1761 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO3t7pp" name="nitrate transport in via nitrite antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1765 or STM1576 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NO3tex" name="nitrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM2267 or STM1473 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NODOx" name="nitric oxide dioxygenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2556</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no3_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NODOy" name="nitric oxide dioxygenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2556</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_no_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_no3_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NOtex" name="nitric oxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NOtpp" name="NO transport diffusion " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_no_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NPHS" name="naphthoate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2307</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbzcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD1" name="5 nucleotidase dUMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 or STM4559.S )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD10" name="5 nucleotidase XMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD10pp" name="5 nucleotidase XMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD11" name="5 nucleotidase IMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD11pp" name="5 nucleotidase IMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_imp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD12" name="5 nucleotidase dIMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dimp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD12pp" name="5 nucleotidase dIMP periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dimp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_din_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD1pp" name="5 nucleotidase dUMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dump_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_duri_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD2" name="5 nucleotidase UMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4559.S or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD2pp" name="5 nucleotidase UMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD3" name="5 nucleotidase dCMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2927 or STM2332 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dcmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcyt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD3pp" name="5 nucleotidase dCMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcmp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcyt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD4" name="5 nucleotidase CMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD4pp" name="5 nucleotidase CMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cmp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD5" name="5 nucleotidase dTMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 or STM4559.S )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD5pp" name="5 nucleotidase dTMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtmp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD6" name="5 nucleotidase dAMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD6pp" name="5 nucleotidase dAMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_damp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dad__2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD7" name="5 nucleotidase AMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD7pp" name="5 nucleotidase AMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD8" name="5 nucleotidase dGMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgmp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD8pp" name="5 nucleotidase dGMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgmp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgsn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD9" name="5 nucleotidase GMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2927</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTD9pp" name="5 nucleotidase GMP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gmp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTP1" name="nucleoside triphosphatase ATP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0659 or STM4349 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTP10" name="nucleoside triphosphatase ITP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4584 or STM4349 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_idp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTP11" name="nucleoside triphosphatase dITP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4584</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ditp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_didp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTP12" name="nucleoside triphosphatase XTP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4584</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTP3" name="nucleoside triphosphatase GTP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4349</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTP5" name="nucleoside triphosphatase CTP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4349</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP1" name="Nucleoside triphosphate pyrophosphorylase dgtp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM0137 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP10" name="Nucleoside triphosphate pyrophosphorylase ditp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3103</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ditp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dimp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP11" name="Nucleoside triphosphate pyrophosphorylase xtp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3103</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP2" name="Nucleoside triphosphate pyrophosphorylase gtp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0137 or STM2954 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP3" name="Nucleoside triphosphate pyrophosphorylase dctp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM2295 or STM1301 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dcmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP4" name="Nucleoside triphosphate pyrophosphorylase ctp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM1301 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP5" name="Nucleoside triphosphate pyrophosphorylase datp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2954 or STM1900 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_damp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP6" name="Nucleoside triphosphate pyrophosphorylase atp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2954</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP7" name="Nucleoside triphosphate pyrophosphorylase dttp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2295 or STM2954 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dttp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP8" name="Nucleoside triphosphate pyrophosphorylase utp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2954</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPP9" name="Nucleoside triphosphate pyrophosphorylase itp " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3103</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPTP1" name="Nucleoside triphosphate tripolyhydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0208</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTPTP2" name="Nucleoside triphosphate tripolyhydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0208</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTRIR2x" name="nitrite Reductase NADH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3474 and STM3475 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="5" constant="true"/>
+ <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTRIR3pp" name="nitrite Reductase Ubiquinole 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4277 and STM4278.S and STM4279 and STM4280 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="3" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NTRIR4pp" name="nitrite Reductase Menaquinole 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4277 and STM4278.S and STM4279 and STM4280 )</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_O2Stex" name="superoxide anion transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2s_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_O2tex" name="oxygen transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_O2tpp" name="o2 transport via diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAADC" name="oxaloacetate decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1884</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OBTFL" name="2 Oxobutanoate formate lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM0970 and STM0973 ) and STM2646 ) or ( STM0970 and STM0973 ) or ( STM0970 and STM3241 ) )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2obut_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OCDCAtexi" name="Octadecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OCDCEAtexi" name="Octadecenoate n C181 transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ocdcea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OCTAtex" name="Octanoate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_octa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octa_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OCTDPS" name="Octaprenyl pyrophosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3305</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="5" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_octdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="5" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ODECOAI" name="Octadecenoyl coa cis trans isomerization" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3983</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_odecoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_od2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OHPBAT" name="O Phospho 4 hydroxy L threonine2 oxoglutarate aminotransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0977</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ohpb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phthr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OHPHM" name="2 octaprenyl 6 hydroxyphenol methylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2276</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ohph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMBZLM" name="2 Octaprenyl 6 methoxy benzoquinol methylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3970</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2ombzl_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ommbl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMCDC" name="2 Oxo 4 methyl 3 carboxypentanoate decarboxylation" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0112</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3c4mop_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4mop_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMMBLHX" name="2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0671</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ommbl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omhmbl_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMMBLHX3" name="2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase anaerobic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_2ommbl_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2omhmbl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMPDC" name="orotidine 5 phosphate decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1707</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMPHHX" name="2 octaprenyl 6 methoxyphenol hydroxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3057</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
+ <speciesReference species="M_2omph_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ombzl_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMPHHX3" name="2 octaprenyl 6 methoxyphenol hydroxylase anaerobic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2omph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_2ombzl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OPHBDC" name="Octaprenyl hydroxybenzoate decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3978 or STM2356 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3ophb_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2oph_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OPHHX" name="2 Octaprenylphenol hydroxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3972</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
+ <speciesReference species="M_2oph_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ohph_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OPHHX3" name="2 Octaprenylphenol hydroxylase anaerobic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2oph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_2ohph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ORNDC" name="Ornithine Decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3114 or STM0701 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ORNabcpp" name="ornithine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2355 and STM2352 and STM2351 and STM2353 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ORNtex" name="ornithine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OROTt2_2pp" name="Orotate transport via proton symport 2 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAAt2_2pp" name="Oxaloacetate transport via proton symport 2 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_oaa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OROTtex" name="Orotate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM0320 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_orot_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAAtex" name="Oxaloacetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM0320 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oaa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ORPT" name="orotate phosphoribosyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3733</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orot5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OXAMTC" name="oxamate transcarbamoylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_oxur_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_oxam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OXGDC2" name="2 oxoglutarate decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2309</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ssaltpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_P5CD" name="1 pyrroline 5 carboxylate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_P5CR" name="pyrroline 5 carboxylate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0386</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PA120abcpp" name="phosphatidate transport via ABC system n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PA140abcpp" name="phosphatidate transport via ABC system n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PA141abcpp" name="phosphatidate transport via ABC system n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PA160abcpp" name="phosphatidate transport via ABC system n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PA161abcpp" name="phosphatidate transport via ABC system n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PA180abcpp" name="phosphatidate transport via ABC system n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PA181abcpp" name="phosphatidate transport via ABC system n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PACALDt2rpp" name="phenylacetaldehyde reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pacald_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pacald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PACALDtex" name="phenethylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pacald_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pacald_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PANTS" name="pantothenate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0181</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pant__R_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__B_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pnto__R_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA120" name="Phosphatidate phosphatase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr120_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA120pp" name="Phosphatidate phosphatase periplasmic n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA140" name="Phosphatidate phosphatase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA140pp" name="Phosphatidate phosphatase periplasmic n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr140_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA141" name="Phosphatidate phosphatase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA141pp" name="Phosphatidate phosphatase periplasmic n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA160" name="Phosphatidate phosphatase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA160pp" name="Phosphatidate phosphatase periplasmic n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA161" name="Phosphatidate phosphatase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA161pp" name="Phosphatidate phosphatase periplasmic n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA180" name="Phosphatidate phosphatase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA180pp" name="Phosphatidate phosphatase periplasmic n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA181" name="Phosphatidate phosphatase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPA181pp" name="Phosphatidate phosphatase periplasmic n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1710</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPPT3" name="phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0125</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ugmda_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uagmda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPSR" name="phosphoadenylyl sulfate reductase thioredoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2946 and STM2649 ) or ( STM2946 and STM3915 ) )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_paps_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PAPSR2" name="phosphoadenylyl sulfate reductase glutaredoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2946 and STM0872 ) or ( STM2946 and STM1165 ) or ( STM2946 and STM1433 ) or ( STM2946 and STM3702 ) )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_paps_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PDH" name="pyruvate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0152 and STM0153 and STM0154 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PDX5PO2" name="pyridoxine 5 phosphate oxidase anaerboic" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PDX5POi" name="pyridoxine 5 phosphate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1448</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PDX5PS" name="Pyridoxine 5 phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0091 or STM0163 ) and STM2578 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phthr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PDXPP" name="Pyridoxine 5 phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PE120abcpp" name="phosphatidylethanolamine transport via ABC system n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PE140abcpp" name="phosphatidylethanolamine transport via ABC system n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PE141abcpp" name="phosphatidylethanolamine transport via ABC system n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PE160abcpp" name="phosphatidylethanolamine transport via ABC system n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PE161abcpp" name="phosphatidylethanolamine transport via ABC system n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PE180abcpp" name="phosphatidylethanolamine transport via ABC system n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PE181abcpp" name="phosphatidylethanolamine transport via ABC system n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PEAMNtex" name="phenethylamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_peamn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_peamn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PERD" name="Erythronate 4 phosphate 4per dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2370</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4per_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ohpb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PETNT161pp" name="phosphoethanolamine transferase c C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3635</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enlipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr161_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PETNT181pp" name="phosphoethanolamine transferase c C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3635</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enlipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_12dgr181_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PFK" name="phosphofructokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4062 or STM1326 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PFK_2" name="Phosphofructokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4062 or STM3257 or STM1326 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tag6p__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tagdp__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PFL" name="pyruvate formate lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0970 and STM0973 ) or ( STM0970 and STM3241 ) or ( STM4114 and STM4115 ) or ( STM0843 and STM0844 ))</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PG120abcpp" name="phosphatidylglycerol transport via ABC system n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PG140abcpp" name="phosphatidylglycerol transport via ABC system n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PG141abcpp" name="phosphatidylglycerol transport via ABC system n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PG160abcpp" name="phosphatidylglycerol transport via ABC system n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PG161abcpp" name="phosphatidylglycerol transport via ABC system n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PG180abcpp" name="phosphatidylglycerol transport via ABC system n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PG181abcpp" name="phosphatidylglycerol transport via ABC system n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGAMT" name="phosphoglucosamine mutase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3294</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gam1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGCD" name="phosphoglycerate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3062</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3php_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGI" name="glucose 6 phosphate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4221</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGK" name="phosphoglycerate kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3069</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGL" name="6 phosphogluconolactonase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0785</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_6pgl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGLYCP" name="Phosphoglycolate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3482</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pglyc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGM" name="phosphoglycerate mutase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3704 or STM4585 or STM0772 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGMT" name="phosphoglucomutase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0698 or STM2820 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGP120abcpp" name="phosphatidylglycerophosphate transport via ABC system n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGP140abcpp" name="phosphatidylglycerophosphate transport via ABC system n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGP141abcpp" name="phosphatidylglycerophosphate transport via ABC system n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGP160abcpp" name="phosphatidylglycerophosphate transport via ABC system n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGP161abcpp" name="phosphatidylglycerophosphate transport via ABC system n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGP180abcpp" name="phosphatidylglycerophosphate transport via ABC system n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pgp180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGP181abcpp" name="phosphatidylglycerophosphate transport via ABC system n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0984</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP120" name="phosphatidylglycerol phosphate phosphatase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP120pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP140" name="phosphatidylglycerol phosphate phosphatase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp140_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP140pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP141" name="phosphatidylglycerol phosphate phosphatase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP141pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP160" name="phosphatidylglycerol phosphate phosphatase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP160pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP161" name="phosphatidylglycerol phosphate phosphatase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp161_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP161pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP180" name="phosphatidylglycerol phosphate phosphatase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP180pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP181" name="phosphatidylglycerol phosphate phosphatase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pgp181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGPP181pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGSA120" name="Phosphatidylglycerol synthase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGSA140" name="Phosphatidylglycerol synthase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGSA141" name="Phosphatidylglycerol synthase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGSA160" name="Phosphatidylglycerol synthase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGSA161" name="Phosphatidylglycerol synthase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp161_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGSA180" name="Phosphatidylglycerol synthase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PGSA181" name="Phosphatidylglycerol synthase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1945</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pgp181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PHEMEabcpp" name="protoheme transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2254 and STM2253 and STM2252 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pheme_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PHEMEtiex" name="protoheme transport irreversible out via diffusion periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pheme_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pheme_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PHETA1" name="phenylalanine transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3903 or STM0998 or STM4248 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phpyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PHETRS" name="Phenylalanyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1338 and STM1337 )</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnaphe_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phetrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PHEt2rpp" name="L phenylalanine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0568 or STM0150 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PHEtex" name="L phenylalanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phe__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phe__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PIt2rpp" name="phosphate reversible transport via symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3589</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PItex" name="phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PIuabcpp" name="phosphate transport via ABC system uptake periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3855 and STM3854 and STM3856 and STM3857 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1A120pp" name="Phospholipase A1 phosphatidate n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1A140pp" name="Phospholipase A1 phosphatidate n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2tdecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1A141pp" name="Phospholipase A1 phosphatidate n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2tdec7eg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1A160pp" name="Phospholipase A1 phosphatidate n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hdecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1A161pp" name="Phospholipase A1 phosphatidate n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2hdec9eg3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1A180pp" name="Phospholipase A1 phosphatidate n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1A181pp" name="Phospholipase A1 phosphatidate n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2odec11eg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1E120pp" name="Phospholipase A1 phosphatidylethanolamine n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1E140pp" name="Phospholipase A1 phosphatidylethanolamine n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1E141pp" name="Phospholipase A1 phosphatidylethanolamine n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1E160pp" name="Phospholipase A1 phosphatidylethanolamine n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1E161pp" name="Phospholipase A1 phosphatidylethanolamine n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1E180pp" name="Phospholipase A1 phosphatidylethanolamine n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1E181pp" name="Phospholipase A1 phosphatidylethanolamine n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1G120pp" name="Phospholipase A1 phosphatidylglycerol n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg120_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1G140pp" name="Phospholipase A1 phosphatidylglycerol n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg140_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1G141pp" name="Phospholipase A1 phosphatidylglycerol n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg141_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1G160pp" name="Phospholipase A1 phosphatidylglycerol n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1G161pp" name="Phospholipase A1 phosphatidylglycerol n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1G180pp" name="Phospholipase A1 phosphatidylglycerol n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA1G181pp" name="Phospholipase A1 phosphatidylglycerol n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpg181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2A120pp" name="Phospholipase A2 phosphatidate n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1ddecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2A140pp" name="Phospholipase A2 phosphatidate n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1tdecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2A141pp" name="Phospholipase A2 phosphatidate n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1tdec7eg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2A160pp" name="Phospholipase A2 phosphatidate n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1hdecg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2A161pp" name="Phospholipase A2 phosphatidate n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1hdec9eg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2A180pp" name="Phospholipase A2 phosphatidate n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1odecg3p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2A181pp" name="Phospholipase A2 phosphatidate n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1odec11eg3p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2E120pp" name="Phospholipase A2 phosphatidylethanolamine n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe120_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2E140pp" name="Phospholipase A2 phosphatidylethanolamine n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2E141pp" name="Phospholipase A2 phosphatidylethanolamine n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2E160pp" name="Phospholipase A2 phosphatidylethanolamine n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpe160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2E161pp" name="Phospholipase A2 phosphatidylethanolamine n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2E180pp" name="Phospholipase A2 phosphatidylethanolamine n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2E181pp" name="Phospholipase A2 phosphatidylethanolamine n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpe181_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2G120pp" name="Phospholipase A2 phosphatidylglycerol n C120 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg120_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2G140pp" name="Phospholipase A2 phosphatidylglycerol n C140 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg140_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2G141pp" name="Phospholipase A2 phosphatidylglycerol n C141 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg141_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2G160pp" name="Phospholipase A2 phosphatidylglycerol n C160 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2G161pp" name="Phospholipase A2 phosphatidylglycerol n C161 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg161_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2G180pp" name="Phospholipase A2 phosphatidylglycerol n C180 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_1agpg180_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PLIPA2G181pp" name="Phospholipase A2 phosphatidylglycerol n C181 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3957</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1agpg181_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PMDPHT" name="pyrimidine phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aprbu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4r5au_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PMPK" name="phosphomethylpyrimidine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2146</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2mahmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PNTK" name="pantothenate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4139</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto__R_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4ppan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PNTOt4pp" name="Pantothenate sodium symporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3382</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto__R_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pnto__R_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PNTOtex" name="Pantothenate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pnto__R_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pnto__R_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_POX" name="pyruvate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0935</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPA" name="inorganic diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4414 or STM2502 or STM2927 )</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPA2" name="inorganic triphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2927 or STM2502 )</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPAKr" name="Propionate kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3242 or STM2057 or STM2337 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPALtex" name="propanal transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPALtpp" name="propanal transport via channel periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPAt4pp" name="NaPropionate symporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1125</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPAtex" name="propionate transport via diffusion" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppa_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPBNGS" name="porphobilinogen synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0372</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5aop_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppbng_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPC" name="phosphoenolpyruvate carboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4119</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPCDC" name="phosphopantothenoylcysteine decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3730</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4ppcys_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pan4p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPCK" name="phosphoenolpyruvate carboxykinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3500</p>
+ <p>SUBSYSTEM: Anaplerotic Reactions</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPGPPDP" name="guanosine 3 5 bis diphosphate 3 diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3742</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppgpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPK2r" name="polyphosphate kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2501</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPKr" name="polyphosphate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2501</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPM" name="phosphopentomutase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4569</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPM2" name="phosphopentomutase 2 deoxyribose " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4569</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPNCL2" name="phosphopantothenate cysteine ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3730</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4ppan_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4ppcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPND" name="prephenate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2669</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pphn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_34hpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPNDH" name="prephenate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2667</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pphn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_phpyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPPGO" name="protoporphyrinogen oxidase aerobic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3987</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1.5" constant="true"/>
+ <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_ppp9_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPPGO3" name="protoporphyrinogen oxidase anaerobic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3987</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="3" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppp9_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPPNt2rpp" name="3 phenylpropionate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2554</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pppn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pppn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPPNtex" name="3 phenylpropionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pppn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pppn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPS" name="phosphoenolpyruvate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1349</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PPTtex" name="Phosphonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRAGSr" name="phosphoribosylglycinamide synthase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4175</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pram_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gar_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRAIS" name="phosphoribosylaminoimidazole synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2499.S</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fpram_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRAIi" name="phosphoribosylanthranilate isomerase irreversible " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1725</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pran_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2cpr5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRAMPC" name="phosphoribosyl AMP cyclohydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2078</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prbamp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prfp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRASCSi" name="phosphoribosylaminoimidazolesuccinocarboxamide synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2487</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5aizc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_25aics_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRATPP" name="phosphoribosyl ATP pyrophosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2078</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prbatp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prbamp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRFGS" name="phosphoribosylformylglycinamidine synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2565</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fgam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fpram_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRMICI" name="1 5 phosphoribosyl 5 5 phosphoribosylamino methylideneamino imidazole 4 carboxamide isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2076</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prfp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prlp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROD2" name="Proline dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROGLYabcpp" name="L Prolinylglycine Pro Gly transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_progly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROGLYtex" name="L Prolinylglycine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_progly_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_progly_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROTRS" name="Prolyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0242</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnapro_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_protrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROabcpp" name="L proline transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pro__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROt4pp" name="NaProline L symporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1125</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROtex" name="L proline transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pro__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PRPPS" name="phosphoribosylpyrophosphate synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1780</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSCLYStex" name="psicoselysine transporter via diffusion extracellular " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_psclys_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_psclys_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSCVT" name="3 phosphoshikimate 1 carboxyvinyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0978</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_skm5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3psme_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSD120" name="Phosphatidylserine decarboxylase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps120_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe120_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSD140" name="Phosphatidylserine decarboxylase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps140_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSD141" name="Phosphatidylserine decarboxylase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps141_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe141_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSD160" name="Phosphatidylserine decarboxylase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSD161" name="Phosphatidylserine decarboxylase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSD180" name="Phosphatidylserine decarboxylase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps180_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe180_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSD181" name="Phosphatidylserine decarboxylase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4348</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSERT" name="phosphoserine transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0977</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3php_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSERtex" name="phospho L serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pser__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pser__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSP_L" name="phosphoserine phosphatase L serine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4578</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pser__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSP_Lpp" name="phospho L serine phosphatase periplasmic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pser__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSSA120" name="Phosphatidylserine syntase n C120 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps120_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSSA140" name="Phosphatidylserine syntase n C140 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps140_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSSA141" name="Phosphatidylserine syntase n C141 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps141_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSSA160" name="Phosphatidylserine syntase n C160 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSSA161" name="Phosphatidylserine syntase n C161 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps161_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSSA180" name="Phosphatidylserine syntase n C180 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ps180_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSSA181" name="Phosphatidylserine syntase n C181 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2652</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ps181_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTA2" name="Phosphate acetyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2338 ) or ( STM2047 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTAr" name="phosphotransacetylase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2338 or STM2466 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_actp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTHRpp" name="phospho L threonine phosphatase periplasmic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTPATi" name="pantetheine phosphate adenylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3725</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pan4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dpcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTRCORNt7pp" name="putrescineornithine antiporter periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0700</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTRCTA" name="Putrescine Transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3218</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abutn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTRCabcpp" name="putrescine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0877 and STM0878 and STM0879 and STM0880 ) or ( STM1226 and STM1225 and STM1223 and STM1222 ) )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTRCt2pp" name="putrescine transport in via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0700</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PTRCtex" name="putrescine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PUNP1" name="purine nucleoside phosphorylase Adenosine " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4570</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PUNP2" name="purine nucleoside phosphorylase Deoxyadenosine " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4570</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PUNP3" name="purine nucleoside phosphorylase Guanosine " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PUNP4" name="purine nucleoside phosphorylase Deoxyguanosine " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PUNP5" name="purine nucleoside phosphorylase Inosine " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PUNP6" name="purine nucleoside phosphorylase Deoxyinosine " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4570 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PUNP7" name="purine nucleoside phosphorylase Xanthosine " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYAM5PO" name="pyridoxamine 5 phosphate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1448</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDAMK" name="pyridoxamine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2435</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pydam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDXK" name="pyridoxal kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2435 or STM1450 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDXNK" name="pyridoxine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2435</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pydxn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDXPP" name="Pyridoxal 5 phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYK" name="pyruvate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1888 or STM1378 )</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYNP2r" name="pyrimidine nucleoside phosphorylase uracil " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3968</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYRt2rpp" name="pyruvate reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYRtex" name="pyruvate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_QMO2" name="quinol monooxygenase Ubiquinol 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3180</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_QMO3" name="quinol monooxygenase menaquinol 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3180</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_QULNS" name="quinolinate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0756</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_quln_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_R5PP" name="ribose 5 phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_R5PPpp" name="ribose 5 phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rib__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_R5Ptex" name="Ribose 5 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RBFK" name="riboflavin kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0045</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RBFSa" name="riboflavin synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1426</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4r5au_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_db4p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dmlz_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RBFSb" name="riboflavin synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0417</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmlz_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4r5au_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RBK" name="ribokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3885 or STM3793 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RBK_L1" name="L ribulokinase L ribulose " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0103</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbl__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RBP4E" name="L ribulose phosphate 4 epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0101 or STM4388 or STM3677 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RHAT1" name="rhamnosyltransferase I LPS core biosynthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3720</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_kphphhlipa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_icolipa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RHCCE" name="S ribosylhomocysteine cleavage enzyme" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2817</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rhcys_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhptd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hcys__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RIBabcpp" name="D ribose transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3882 and STM3884 and STM3883 and STM3881 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rib__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RIBtex" name="ribose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rib__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rib__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RMI" name="L rhamnose isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4046</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rml_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RMK" name="rhamnulokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4047</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rml_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rml1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RMNtex" name="L rhamnose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rmn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rmn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RMNtpp" name="L rhamnose transport via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4050</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rmn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RMPA" name="Rhamnulose 1 phosphate aldolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4045</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rml1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lald__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR1" name="ribonucleoside diphosphate reductase ADP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR1b" name="ribonucleoside diphosphate reductase ADP glutaredoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR2" name="ribonucleoside diphosphate reductase GDP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR2b" name="ribonucleoside diphosphate reductase GDP glutaredoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3702 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR3" name="ribonucleoside diphosphate reductase CDP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR3b" name="ribonucleoside diphosphate reductase CDP glutaredoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR4" name="ribonucleoside diphosphate reductase UDP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNDR4b" name="ribonucleoside diphosphate reductase UDP glutaredoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) or ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNTR1c" name="ribonucleoside triphosphate reductase ATP flavodoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3045 and STM4084 and STM4452 and STM4451 ) or ( STM3045 and STM4452 ) or ( STM0694 and STM4452 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNTR2c" name="ribonucleoside triphosphate reductase GTP flavodoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0694 and STM4452 ) or ( STM3045 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNTR3c" name="ribonucleoside triphosphate reductase CTP flavodoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3045 and STM4452 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) or ( STM0694 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNTR4c" name="ribonucleoside triphosphate reductase UTP flavodoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0694 and STM4084 and STM4452 and STM4451 ) or ( STM3045 and STM4452 ) or ( STM0694 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RPE" name="ribulose 5 phosphate 3 epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3483 or STM4080 or STM1617 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RPI" name="ribose 5 phosphate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3063 or STM1933 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_S7PI" name="sedoheptulose 7 phosphate isomerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0310</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_s7p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmhep7p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SADH" name="Succinylarginine dihydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1306</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_sucarg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sucorn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SADT2" name="Sulfate adenyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2934 and STM2935 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_aps_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SBTPD" name="sorbitol 6 phosphate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2835</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sbt6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SBTptspp" name="D sorbitol transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2431 and STM2432 and STM2832 and STM2834 and STM2833 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sbt6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SBTtex" name="D sorbitol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sbt__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sbt__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SDPDS" name="succinyl diaminopimelate desuccinylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2483</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sl26da_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_26dap__LL_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SDPTA" name="succinyldiaminopimelate transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3468</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sl26da_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sl2a6o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SELCYSS" name="selenocysteine synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3683</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sertrna__sec___c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_selnp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sectrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SELNPS" name="Selenophosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1297</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_seln_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_selnp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERASr" name=" L seryl adenylate synthase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0588</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_seramp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERAT" name="serine O acetyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3699</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERD_D" name="D serine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3802</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERTRS" name="Seryl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0963</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnaser_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sertrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERTRS2" name="Seryl tRNA synthetase selenocystein " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0963</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnasecys_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sertrna__sec___c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERt2rpp" name="L serine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2970 or STM3243 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERt4pp" name="L serine via sodium symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3225</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERtex" name="L serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SFGTHi" name="S Formylglutathione hydralase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2194</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_Sfglutth_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SGDS" name="Succinylglutamate desuccinylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1307</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucglu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SGSAD" name="Succinylglutamic semialdehyde dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1305</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sucgsa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_sucglu_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SHCHCS2" name="2 succinyl 6 hydroxy 2 4 cyclohexadiene 1 carboxylate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2309</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ssaltpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2shchc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SHCHD2" name="sirohydrochlorin dehydrogenase NAD " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3477</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dscl_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_scl_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SHCHF" name="sirohydrochlorin ferrochetalase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3477</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_scl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_sheme_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SHK3Dr" name="shikimate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1359 or STM3401 or STM3859 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3dhsk_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_skm_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SHKK" name="shikimate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3487 or STM0388 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_skm_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_skm5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SKMtex" name="shikimate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_skm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_skm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SO2tex" name="SO2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SO2tpp" name="SO2 transport via diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SO3tex" name="sulfite transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SO4tex" name="sulfate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_so4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so4_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SOTA" name="Succinylornithine transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1303</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucorn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucgsa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SPMDAT1" name="Spermidine acetyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1502</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_N1aspmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SPMDAT2" name="Spermidine acetyltransferase N8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1502</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_n8aspmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SPMDabcpp" name="spermidine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1226 and STM1225 and STM1223 and STM1222 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_spmd_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SPMDtex" name="spermidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_spmd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_spmd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SPMS" name="spermidine synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0166</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ametam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5mta_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SPODM" name="superoxide dismutase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4055 or STM1431 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_o2s_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SPODMpp" name="superoxide dismutase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1440 or STM1044 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2s_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SSALx" name="succinate semialdehyde dehydrogenase NAD " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SSALy" name="succinate semialdehyde dehydrogenase NADP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2791</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCBZL" name="o succinylbenzoate CoA ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2305</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sucbz_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sbzcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCBZS" name="O succinylbenzoate CoA synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2306</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2shchc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucbz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCCt2_2pp" name="succinate transport via proton symport 2 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3614</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCCt3pp" name="succinate transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCCtex" name="succinate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCDi" name="succinate dehydrogenase irreversible " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0732 and STM0733 and STM0734 and STM0735 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCOAS" name="succinyl CoA synthetase ADP forming " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0738 and STM0739 )</p>
+ <p>SUBSYSTEM: Citric Acid Cycle</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCRtex" name="sucrose transport transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sucr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sucr_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SULFACtex" name="sulfoaceate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_sulfac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_sulfac_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SULRi" name="sulfite reductase NADPH2 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2947 and STM2948 )</p>
+ <p>SUBSYSTEM: Cysteine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="5" constant="true"/>
+ <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SULabcpp" name="sulfate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2441 and STM2443 and STM2442 and STM4063 ) or ( STM0781 and STM0782 and STM0783 ) or ( STM2441 and STM2444 and STM2443 and STM2442 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_so4_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_T2DECAI" name="trans 2 decenoyl ACP isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1067</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdec3eACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TALA" name="transaldolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2473 or STM0007 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_s7p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TARTRtex" name="Tartrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TAURtex" name="taurine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_taur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_taur_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TCYNTtex" name="Thiocyanate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcynt_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcynt_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDECOAI" name="tetradecenoyl coa cis trans isomerization" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3983</p>
+ <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tdecoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_td2coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDP" name="thiamin pyrophosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1235</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDPADGAT" name="dTDP 4 amino 4 6 dideoxy D glucose acetyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3924</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4addg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp4aaddg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDPAGTA" name="dTDP 4 amino 4 6 dideoxy D glucose transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3925</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp4addg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDPDRE" name="dTDP 4 dehydrorhamnose 3 5 epimerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2094</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtdp4d6dm_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDPDRR" name="dTDP 4 dehydrorhamnose reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2096</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp4d6dm_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDPGDH" name="dTDPglucose 4 6 dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2097 or STM3922 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdpglu_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDSK" name="Tetraacyldisaccharide 4 kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0985</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipidAds_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lipidA_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDSR1" name="thioldisulfide reductase DsbC " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3043 and STM4323 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbcox_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbdrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbcrd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TDSR2" name="thioldisulfide reductase DsbG " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4323 and STM0607 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dsbdrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbgox_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dsbdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dsbgrd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THD2pp" name="NAD P transhydrogenase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1480 and STM1479 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THDPS" name="tetrahydrodipicolinate succinylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0213</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thdp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sl2a6o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THIORDXi" name="hydrogen peroxide reductase thioredoxin " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( ( STM0609 and STM0608 ) or ( STM0609 and STM0402) ) and ( STM2649 or STM3915 ) )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THMDt2pp" name="thymidine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THMDt2rpp" name="thymidine transport in via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THMDtex" name="thymidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THMabcpp" name="thiamine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0108 and STM0107 and STM0106 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thm_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THMtex" name="Thiamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thm_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRA2i" name="L allo Threonine Aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_athr__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRAi" name="Threonine aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRD" name="L threonine dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3708</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRD_L" name="L threonine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3244 or STM1826 or STM2971 or STM3905 )</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2obut_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRPtex" name="phospho L threonine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thrp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRS" name="threonine synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0004</p>
+ <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_phom_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRTRS" name="Threonyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1333</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnathr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thrtrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRabcpp" name="L threonine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRt2pp" name="L threonine efflux transport via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0832 or STM3959 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRt2rpp" name="L threonine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3243</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRt4pp" name="L threonine via sodium symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3225</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRtex" name="L threonine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THYMt3pp" name="thymine transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thym_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THYMtex" name="thymine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thym_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thym_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TKT1" name="transketolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3076 or STM2474 or STM2341 or STM2340 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_s7p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TKT2" name="transketolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3076 or STM2474 or STM2341 or STM2340 )</p>
+ <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMAOR1pp" name="Trimethylamine N oxide reductase menaquinol 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3823 and STM3822 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tmao_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tma_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMAOR2pp" name="Trimethylamine N oxide reductase demethylmenaquinol 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3823 and STM3822 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tmao_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tma_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMAOtex" name="Trimethylamine N oxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tmao_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tmao_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMAtex" name="Trimethylamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tma_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tma_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMDK1" name="thymidine kinase ATPthymidine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1750</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMDPP" name="thymidine phosphorylase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4568</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thym_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMDS" name="thymidylate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3001</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMK" name="thiamine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1208</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMPK" name="thiamine phosphate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0419</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TMPPP" name="thiamine phosphate diphosphorylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4163</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4mpetz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2mahmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TPI" name="triose phosphate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4081</p>
+ <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TPRDCOAS" name="triphosphoribosyl dephospho CoA synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0619</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dpcoa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2tpr3dpcoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRDR" name="thioredoxin reductase NADPH " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM3915 and ( STM0958 and STM0958 ) ) or STM2649 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRE6PH" name="trehalose 6 phosphate hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4453</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRE6PP" name="trehalose phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1929</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tre_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRE6PS" name="alpha alpha trehalose phosphate synthase UDP forming " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1928</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TREH" name="alpha alpha trehalase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3603</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tre_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TREHpp" name="alpha alpha trehalase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1796</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glc__D_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TREptspp" name="trehalose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2433 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TREtex" name="trehalose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tre_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tre_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRPS1" name="tryptophan synthase indoleglycerol phosphate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ig3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRPS2" name="tryptophan synthase indole " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRPS3" name="tryptophan synthase indoleglycerol phosphate " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3ig3p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRPTRS" name="Tryptophanyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3481</p>
+ <p>SUBSYSTEM: tRNA Charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnatrp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trptrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRPt2rpp" name="L tryptophan reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0150 or STM3279 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRPtex" name="L tryptophan transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trp__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_trp__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TRSARr" name="tartronate semialdehyde reductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0519 or STM3248 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TSULabcpp" name="thiosulfate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM2441 and STM2444 and STM2443 and STM2442 ) or ( STM2441 and STM2443 and STM2442 and STM4063 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TSULtex" name="thiosulfate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TTDCAtexi" name="Tetradecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdca_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TTDCEAtexi" name="Tetradecenoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ttdcea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TUNGSabcpp" name="tungstate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0781 and STM0782 and STM0783 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tungs_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tungs_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TUNGStex" name="tungstate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0320 or STM0999 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tungs_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tungs_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TYMtex" name="tyramine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tym_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tym_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TYRPpp" name="phospho L tyrosine phosphatase periplasmic " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4249</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyr__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TYRPtex" name="phopho L tyrosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyrp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyrp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TYRTA" name="tyrosine transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4248 or STM0998 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_34hpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TYRTRS" name="tyrosyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1449</p>
+ <p>SUBSYSTEM: tRNA charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_trnatyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyrtrna_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TYRt2rpp" name="L tyrosine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1937 or STM0150 or STM0568 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TYRtex" name="L tyrosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tyr__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tyr__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_U23GAAT" name="UDP 3 O 3 hydroxymyristoyl glucosamine acyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0226</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_u3hga_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_u23ga_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAAGDS" name="UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimelate synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0123</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uamag_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UACGALPpp" name="UDP N acetyl D galactosamine pyrophosphohydrolase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpacgal_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgal1p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UACGAMPpp" name="UDP N acetyl D glucosamine pyrophosphohydrolase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uacgam_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_acgam1p_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UACGAMtex" name="UDP N acetyl D glucosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uacgam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UACMAMO" name="UDP N acetyl D mannosamine oxidoreductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3921</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacmam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_uacmamu_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAG2E" name="UDP N acetylglucosamine 2 epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3920</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uacmam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAGAAT" name="UDP N acetylglucosamine acyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1196 and STM0228 )</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_u3aga_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAGCVT" name="UDP N acetylglucosamine 1 carboxyvinyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3307</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uaccg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAGDP" name="UDP N acetylglucosamine diphosphorylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3862</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acgam1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAGPT3" name="UDP N acetylglucosamine N acetylmuramyl pentapeptide pyrophosphoryl undecaprenol N acetylglucosamine transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0128</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uagmda_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uaagmda_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAMAGS" name="UDP N acetylmuramoyl L alanyl D glutamate synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0126</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uama_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uamag_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAMAS" name="UDP N acetylmuramoyl L alanine synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0129</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uama_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UAPGR" name="UDP N acetylenolpyruvoylglucosamine reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4137</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uaccg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPDP" name="undecaprenyl diphosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1710 or STM0865 or STM3205 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPDPS" name="Undecaprenyl diphosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0221</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ipdp_c" stoichiometry="8" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="8" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPDPpp" name="undecaprenyl diphosphatase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0865 or STM1710 or STM3205 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPPtppi" name="undecaprenyl phosphate transport cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPACGALtex" name="UDP N acetyl D galactosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpacgal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpacgal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPG4E" name="UDPglucose 4 epimerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0776</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGALPpp" name="UDPgalactose pyrophosphohydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpgal_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal1p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGALtex" name="UDPgalactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGD" name="UDPglucose 6 dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2080</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpglcur_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGDC" name="UDP glucuronate C 4 decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2299</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpglcur_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpLa4o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGLCURtex" name="UDP D glucuronate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpglcur_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpglcur_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGPpp" name="UDPglucose pyrophosphohydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpg_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g1p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGtex" name="UDPglucose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPKAAT" name="UDP 4 ketopentoseUDP 4 amino 4 deoxy L arabinose aminotransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2297</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpLa4o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpLa4n_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UGLCURPpp" name="UDP D glucuronate pyrophosphohydrolase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0494</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpglcur_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glcur1p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UGLT" name="UDPglucose hexose 1 phosphate uridylyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0775</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gal1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UGLYCH" name="Ureidoglycolate hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0515</p>
+ <p>SUBSYSTEM: Nitrogen Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urdglyc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UGMDDS" name="UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimeloyl D alanyl D alanine synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0124</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alaala_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ugmda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UHGADA" name="UDP 3 O acetylglucosamine deacetylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0134</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_u3aga_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_u3hga_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ULA4NFT" name="UDP L Ara4N formyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2299</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpLa4n_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpLa4fn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ULA4Ntppi" name="transport cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uLa4n_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uLa4n_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UM3PL" name="UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4416</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UM4PCP" name="UDP N acetylmuramoyl L alanyl D gamma glutamyl meso 2 6 diaminopimelate D alanine L D carboxypeptidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1800</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_um4p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UM4PL" name="UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate D alanine ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4416</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_um4p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UMPK" name="UMP kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0980 or STM0218 )</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UMPtex" name="UMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ump_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UNK3" name="2 keto 4 methylthiobutyrate transamination" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4248</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2kmb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UPLA4FNF" name="undecaprenyl phosphate L Ara4FN formylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uLa4fn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uLa4n_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UPLA4FNT" name="undecaprenyl phosphate L Ara4FN transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2298</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpLa4fn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uLa4fn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UPP3MT" name="uroporphyrinogen methyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3936 or STM3477 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uppg3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_dscl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UPP3S" name="uroporphyrinogen III synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3937</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hmbil_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uppg3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UPPRT" name="uracil phosphoribosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2498</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URAt2pp" name="uracil transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2497</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ura_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URAtex" name="uracil transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ura_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URDGLYCD" name="ureidoglycolate dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0528</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_urdglyc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oxur_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UREAtex" name="Urea transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UREAtpp" name="Urea transport via facilitate diffusion periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4087</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urea_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URIC" name="uricase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_urate_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_alltn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URIDK2r" name="uridylate kinase dUMP " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0218</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URIH" name="Uridine hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0661 or STM0051 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URIK2" name="uridine kinase GTPUridine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2122</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URIt2pp" name="uridine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URIt2rpp" name="uridine transport in via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_URItex" name="uridine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0413</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_uri_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_USHD" name="UDP sugar hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0535</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_u23ga_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lipidX_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_VALTA" name="valine transaminase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3903</p>
+ <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_VALTRS" name="Valyl tRNA synthetase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4475</p>
+ <p>SUBSYSTEM: tRNA charging</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_trnaval_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_valtrna_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_VALabcpp" name="L valine transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_val__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_VALt2rpp" name="L valine reversible transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_val__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_VALtex" name="L valine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_val__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_val__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_VPAMT" name="Valine pyruvate aminotransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3665</p>
+ <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_X5PL3E" name="L xylulose 5 phosphate 3 epimerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4387</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xu5p__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ru5p__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XANt2pp" name="xanthine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3747</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xan_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XANtex" name="xanthine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XANtpp" name="xanthine reversible transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XMPtex" name="XMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xmp_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xmp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XPPT" name="xanthine phosphoribosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0317</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XTSNH" name="Xanthosine hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0051</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XTSNt2rpp" name="Xanthosine transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2421</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XTSNtex" name="xanthosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xtsn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xtsn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLI1" name="xylose isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3661</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLI2" name="xylose isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3661</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fru_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLK" name="xylulokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3660 or STM0103 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xylu__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLK2" name="L xylulokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0103 or STM3674 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xu5p__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLUt2pp" name="L xylulose transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3671 and STM3672 and STM3673 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xylu__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLUtex" name="L xylulose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xylu__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xylu__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLtex" name="D xylose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_xyl__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xyl__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_XYLt2pp" name="D xylose transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0042</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_xyl__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_xyl__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ZN2abcpp" name="Zinc Zn2 ABC transporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3576</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ZN2t3pp" name="zinc Zn2 transport out via proton antiport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0758 or STM4061 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ZN2tpp" name="zinc transport in via permease no H " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3190</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ZNabcpp" name="zinc Zn2 transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1891 and STM1893 and STM1892.S )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Zn2tex" name="zinc Zn2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_zn2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GCALDD" name="Glycolaldehyde dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Folate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gcald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THZPSN" name="thiazole phosphate synthesis" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2543 and STM4162 and ( STM4159 and STM4160 ) and STM0425 and STM4161 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4mpetz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4hba_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_AEP_e" name="AEP exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_AEP_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_AEP_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AEPtex" name="AEP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_AEP_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_AEP_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AEPabcpp" name="AEP transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0426 and STM0427 and STM0429 and STM0428 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_AEP_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_AEP_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AEPPYRTA" name="2 aminoethylphosphonate pyruvate transaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0431</p>
+ <p>SUBSYSTEM: aminophosphonate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_AEP_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_Pald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PALDH" name="phosphonoacetaldehyde hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0432</p>
+ <p>SUBSYSTEM: aminophosphonate metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_Pald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_4hoxpac_e" name="4 hydroxyphenylacetate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpac_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4hoxpactex" name="4 hydroxyphenylacetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpac_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpac_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4HOXPACt2pp" name="4 hydroxyphenylacetate transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1107</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpac_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hoxpac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FLAVNADR" name="Flavin NAD P H reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1098</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4HOXPACMON" name="4 hydroxyphenylacetate 3 monooxygenase nadh" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1098 or STM1099)</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hoxpac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_34dhpacet_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4HOXPACMOF" name="4 hydroxyphenylacetate 3 monooxygenase FADH2" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1099</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4hoxpac_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_34dhpacet_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_34DHPACDO" name="3 4 dihydroxyphenylacetate 2 3 dioxygenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1103</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_34dhpacet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2h5cmmusa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4C2HM6SADH" name="4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1102</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2h5cmmusa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5cm2hmu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_5CM2HMUDI" name="5 carboxymethyl 2 hydroxymuconate delta isomerase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1104</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5cm2hmu_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5c2o3ed_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_5C2O3EDDC" name="5 carboxy 2 oxohept 3 enedioate decarboxylation" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1101</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5c2o3ed_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2HH24DDH" name="2hh24dd hydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1105</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4h2kpi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4H2KPILY" name="4h2kpi Lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1106</p>
+ <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4h2kpi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12PPDS2tpp" name=" S Propane 1 2 diol facilitated transport 2 periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2037</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12PPDRDH" name=" R Propane 1 2 diol dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2040 and STM2041 and STM2042 and STM2043 and STM2044)</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12PPDSDH" name=" S Propane 1 2 diol dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2040 and STM2041 and STM2042 and STM2043 and STM2044)</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALCDPPAL" name="alcohol dehydrogenase Propanal " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2052</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppoh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COAPPALDH" name="CoA dependent Propanal dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2051</p>
+ <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DSCLCOCH" name="Sirohydrochlorin cobaltochelatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2025 or STM3477 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dscl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Cobalt2abcppI" name="cobalt II transport via ABC system periplasm I" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2023 and STM2022 and STM2021 and STM2020 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_Cobalt2abcppII" name="cobalt II transport via ABC system periplasm II" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2023 and STM2022 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL2MT" name="Cobalt precorrin 2 methyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2024</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_codscl2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL3MT" name="Cobalt precorrin 3 C17 methyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2027</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL4MT" name="Cobalt precorrin 4 methyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2029</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl5a_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL5DA" name="Cobalt precorrin 5a deacetylation" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2028</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl5a_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_codscl5b_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL5BMT" name="Cobalt precorrin 5b methyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2032</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl5b_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_codscl6a_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL6ARED" name="Cobalt precorrin 6a reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2026</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_codscl6a_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_codscl6b_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL6BMT" name="Cobalt precorrin 6b methyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2031</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl6b_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_codscl7_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL7MTDC" name="Cobalt precorrin 7 methyltransferase decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2030</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_codscl7_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_codscl8x_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CODSCL8XI" name="Cobalt precorrin 8x isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2033</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_codscl8x_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cobn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COBNAD" name="Cobyrinate amidation" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2035</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cobn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cob2nda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COB2NDARED" name="cob II yrinate a c diamide reductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cob2nda_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cob1nda_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COB1NDAAT1" name="cob I yrinate a c diamide adenosyltransferase 1" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2050 or STM1718 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cob1nda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adcob1nda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_COB1NDAAT2" name="cob I yrinate a c diamide adenosyltransferase 2" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2467</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cob1nda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adcob1nda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADCOBNSYN" name="adenosylcobyric acid synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2019</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adcob1nda_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="4" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_adcobn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="4" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LTHRK" name="L threonine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2058</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_thrp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_THRPDC" name="L threonine phosphate decarboxylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0644</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_thrp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_appp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADOCBIPS" name="Adenosyl cobinamide phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2034</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_appp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adcobn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbip_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADOCBLPS" name="Adenosylcobalamin phosphate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2017</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_5prdmbz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_agdpcbi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocblp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADOCBLPP" name="Adenosylcobalamin phosphate phosphatase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0643</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_adocblp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ADOCBIK" name="Adenosyl cobinamide kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2018 or STM1208 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adocbip_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBLAT" name="cob I alamin adenosyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1718 or STM2050 or STM2467 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cbl1_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adocbl_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_APPK" name="1 amino 2 propanol kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_app_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_appp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_remnant1_e" name="residual atoms of reaction DMBZIDSYN exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_remnant1_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_remnant1_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_REMNANT1tex" name="residual atoms of reaction DMBZIDSYN transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_remnant1_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_remnant1_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_colipa20Oag_e" name="O antigen x20 core oligosaccharide lipid A exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa20Oag_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipa20Oag_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_colipa20Oagtex" name="O antigen x20 core oligosaccharide lipid A transport periplasm to extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa20Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipa20Oag_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_udcdp20OagLpp" name="O antigen x20 ligase periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3713</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp20Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipa20Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_udcdpgalrmnmanabetpp" name="Undecaprenyl diphosphate galactose rhamnose mannose abequose flippase cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2088</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OGLT" name="galactosyltransferase LPS O antigen biosynthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2082</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgal_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ORLT" name="rhamnosyl transferase LPS O antigen biosynthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2085</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgal_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdpgalrmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OMLT" name="mannosyl transferase LPS O antigen biosynthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2086</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnman_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OALT" name="abequosyl transferase LPS O antigen biosynthesis " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2087</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpabeq_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnman_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdpgalrmnmanabe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MAN1PT2" name="mannose 1 phosphate guanylyltransferase GDP " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2105.S or STM2084 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PMANM" name="phosphomannomutase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2104 or STM2083 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_man1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP1pp" name="O antigen polymerase 1 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp2Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP2pp" name="O antigen polymerase 2 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp2Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp3Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP3pp" name="O antigen polymerase 3 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp3Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp4Oag_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP4pp" name="O antigen polymerase 4 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp4Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp5Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP5pp" name="O antigen polymerase 5 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp5Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp6Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP6pp" name="O antigen polymerase 6 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp6Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp7Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP7pp" name="O antigen polymerase 7 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp7Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp8Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP8pp" name="O antigen polymerase 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp8Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp9Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP9pp" name="O antigen polymerase 9 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp9Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp10Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP10pp" name="O antigen polymerase 10 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp10Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp11Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP11pp" name="O antigen polymerase 11 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp11Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp12Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP12pp" name="O antigen polymerase 12 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp12Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp13Oag_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP13pp" name="O antigen polymerase 13 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp13Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp14Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP14pp" name="O antigen polymerase 14 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp14Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp15Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP15pp" name="O antigen polymerase 15 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp15Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp16Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP16pp" name="O antigen polymerase 16 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp16Oag_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp17Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP17pp" name="O antigen polymerase 17 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp17Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp18Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP18pp" name="O antigen polymerase 18 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp18Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcdp19Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAP19pp" name="O antigen polymerase 19 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1332</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcdp19Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcdp20Oag_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_G1PCT" name="glucose 1 phosphate cytidylyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2092</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdpglc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDPGLC46DH" name="CDP glucose 4 6 dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2091</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpglc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cdp4dh6doglc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDP4D6DGLCRx" name="CDP 4 dehydro 6 deoxyglucose reductase " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2090 and STM2093 )</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdp4dh6doglc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdp4dh36ddglc_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CDPABEQS" name="CDP abequose synthase " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2089</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdp4dh36ddglc_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdpabeq_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4FEexs" name="Salmochelin S4 Fe III binding spontaneous " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4fe_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_SALCHS4_e" name="Salmochelin S4 exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_SALCHS4FE_e" name="Salmochelin S4 Fe III exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4fe_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4FEabcpp" name="Salmochelin S4 Fe III transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4tex" name="Salmochelin S4 transport secretion periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4abcpp" name="Salmochelin S4 transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2774</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs4_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTER2tpp" name="enterochelin transport2 via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2774</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_SALCHSX_e" name="Salmochelin SX exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchsx_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchsx_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHSXtex" name="Salmochelin SX via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchsx_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchsx_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHSXtpp" name="Salmochelin SX facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchsx_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchsx_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CSNt2pp" name="cytosine transport in via proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3333</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CSND" name="Cytosine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3334</p>
+ <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALCD19" name="alcohol dehydrogenase glycerol " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1627</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALCD2x" name="alcohol dehydrogenase ethanol " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1627 or STM1567 or STM1749 or STM2461 )</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_etoh_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FALDH2" name="formaldehyde dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1627</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hmgth_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_Sfglutth_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DPR" name="2 dehydropantoate 2 reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3909 or STM0434 or STM2573 )</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dhp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pant__R_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LIPAHT2ex" name="core oligosaccharide lipid Ahexadecanoate transferase n C160 extracellular membrane " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0628</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipa_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hacolipa_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LIPAHTex" name="Lipid Ahexadecanoate transferase n C160 extracellular membrane " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0628</p>
+ <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lipa_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_halipa_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTBD2pp" name="cytochrome oxidase bd menaquinol 8 2 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1792 and STM1793 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYTBDpp" name="cytochrome oxidase bd ubiquinol 8 2 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1792 and STM1793 ) or ( STM0740 and STM0741 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACANTHAT" name="acetyl CoAanthranilate acetyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1582</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_anth_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acanth_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLTPD" name="Galactitol 1 phosphate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3261</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_galt1p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tag6p__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TGBPA" name="Tagatose bisphosphate aldolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3257 and STM3253 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tagdp__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GUI1" name="glucuronate isomerase D glucuronate " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3137</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glcur_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GUI2" name="glucuronate isomerase D galacturonate " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3137</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galur_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tagur_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MNNH" name="D mannonate hydrolyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3135</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mana_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MANAO" name="Mannonate oxidoreductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3136</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mana_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fruur_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAADCS" name="oxaloacetate decarboxylase sodium pump" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0054 and STM0055 and STM0056 ) or ( STM3351 and STM3352 and STM3353 ))</p>
+ <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CITt4pp" name="Citrate transport via sodium symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0057</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDGLCNt2rpp" name="2 dehydro 3 deoxy D gluconate transport via proton symport reversible periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0161</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2ddglcn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ddglcn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CITt2pp" name="Citrate proton symport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0689</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CITtupp" name="Citrate transport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ICITtupp" name="Isocitrate transport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_icit_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ACONCtupp" name="Cisaconitate transport periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_acon__C_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NI2uabcpp" name="nickel transport via ABC system uptake periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4456 or ( STM1255 and STM1256 and STM1257 and STM1258 and STM1259 ) )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALTptspp" name="Galactitol transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3258 and STM3259 and STM3260 and STM2431 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galt_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_galt1p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tag__D_e" name="D Tagatose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tag__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TAGtex" name="D Tagatose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tag__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TAGptspp" name="D Tagatose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3255 and STM3256 and STM2432 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tag__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tag1p__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TAG1PK" name="D Tagatose 1 phosphate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1326 or STM3254)</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tag1p__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tagdp__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE2abcpp" name="iron II transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3506 or ( STM2861 and STM2862 and STM2863 and STM2864 ))</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MN2abcpp" name="Manganese Mn2 transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2861 and STM2862 and STM2863 and STM2864 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TETDHpp1" name="Tetrathionate Dehydrogenase menaquinone 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TSULDHpp1" name="Thiosulfate Dehydrogenase menaquinone 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TETDHpp2" name="Tetrathionate Dehydrogenase Demethylmenaquinol 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TSULDHpp2" name="Thiosulfate Dehydrogenase Demethylmenaquinol 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TETDHpp3" name="Tetrathionate Dehydrogenase ubiquinone 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tsul_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TSULDHpp3" name="Thiosulfate Dehydrogenase ubiquinone 8 periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SO3R" name="Sulfite reductase " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2548 and STM2549 and STM2550 )</p>
+ <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadh_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="5" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MG2uabcpp" name="Magnesium Mg2 ABC transporter ubtake periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4456 or STM3763 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mg2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UPPDC1" name="uroporphyrinogen decarboxylase uroporphyrinogen III " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4167</p>
+ <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_uppg3_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cpppg3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="4" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AIRSK" name="Aminoimidazole riboside kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4066</p>
+ <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_airs_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_airs_e" name="Aminoimidazole riboside exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_airs_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_airs_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AIRStex" name="Aminoimidazole riboside transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_airs_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_airs_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AIRStpp" name="Aminoimidazole riboside facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_airs_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_airs_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_REMNANT1tpp" name="residual atoms of reaction DMBZIDSYN facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_remnant1_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_remnant1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ARGDA" name="Arginine deiminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4467</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_citr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OCBT" name="ornithine carbamoyltransferase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4469 or STM4465 )</p>
+ <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_citr__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CBMKr" name="Carbamate kinase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0532 or STM4466 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3PGt6pp" name="3 Phospho D glycerate phosphate antiporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2PGt6pp" name="D Glycerate 2 phosphate phosphate antiporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PEPt6pp" name="Phosphoenolpyruvate phosphate antiporter periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2399</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_pep_e" name="Phosphoenolpyruvate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pep_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PEPtex" name="Phosphoenolpyruvate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pep_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pep_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_2pg_e" name="D Glycerate 2 phosphate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2pg_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2PGtex" name="D Glycerate 2 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2pg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2pg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_3pg_e" name="3 Phospho D glycerate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_3PGtex" name="3 Phospho D glycerate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_3pg_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_3pg_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SERD_L" name="L serine deaminase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3240 or STM1826 or STM2971 or STM2196 )</p>
+ <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TARTD" name="L tartrate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3355 and STM3354 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TARTRtpp" name="Tartrate facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NI2tpp" name="nickel 2 transport in via permease no H " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3952 or STM2783 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CAT" name="catalase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM1318 or STM4106 or STM1731 )</p>
+ <p>SUBSYSTEM: Unassigned</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHORM" name="chorismate mutase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM2667 or STM2669 or STM1269 )</p>
+ <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pphn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DAPAL" name="2 3 diaminopropionate amonnia lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1002</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dappa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDPGALM" name="UDPgalactopyranose mutase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0719</p>
+ <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udpgalfur_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HYD1pp" name="hydrogenase ubiquinone 8 2 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852 ) or ( STM1538 and STM1539 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HYD2pp" name="Hydrogenase menaquinone8 2 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM1538 and STM1539 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HYD3pp" name="Hydrogenase Demethylmenaquinone 8 2 protons periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM1538 and STM1539 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tet_e" name="Tetrathionate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tet_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tet_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TETtex" name="Tetrathionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tet_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_foam_e" name="Formamide exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_foam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_foam_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FOAMtex" name="Formamide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_foam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_foam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tartr__D_e" name="D tartrate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TARTRDtex" name="D Tartrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__D_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TARTRDtpp" name="D Tartrate facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3356</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tartr__D_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALCTD" name="galactarate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM3250 or STM3697 )</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galct__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_5dh4dglc_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SHSL1" name="O succinylhomoserine lyase L cysteine " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4100 or STM3624A )</p>
+ <p>SUBSYSTEM: Methionine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_suchms_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cyst__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ASPt2_3pp" name="L asparate transport via proton symport 3 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4325 or STM4301 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCFUMtpp" name="succinatefumarate antiporter periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4301 or STM0627 or STM4325 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SUCCt2_3pp" name="Succintate transport via proton symport 3 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4301 or STM4325 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FUMt2_3pp" name="Fumarate transport via proton symport 3 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4325 or STM4301 or STM0627 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MALt2_3pp" name="Malate transport via proton symport 3 H periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM4301 or STM4325 or STM3599 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_mal__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALAALAD" name="D alanine D alanine dipeptidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1599</p>
+ <p>SUBSYSTEM: Murein Recycling</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMSOR1" name="Dimethyl sulfoxide reductase Menaquinol 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM1499 and STM1498 and STM1497 and STM1496 ) or ( STM0964 and STM0965 and STM0966 ) or ( STM4305.S and STM4306 and STM4307 ) or ( STM2528 and STM2530 and STM2529 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dmso_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dms_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMSOR2" name="Dimethyl sulfoxide reductase Demethylmenaquinol 8 " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0964 and STM0965 and STM0966 ) or ( STM4305.S and STM4306 and STM4307 ) or ( STM2528 and STM2530 and STM2529 ) )</p>
+ <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dmso_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dms_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NAt3pp" name="sodium transport out via proton antiport cytoplasm to periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0866 or STM1771 or STM1556 )</p>
+ <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4IZ5PPH" name="4 Imidazolone 5 propanoate propionase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0787</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4iz5pp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nflgln_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NFLGLNH" name="N Formimino L glutamate formiminohydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0788</p>
+ <p>SUBSYSTEM: Histidine Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nflgln_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_foam_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_4abz_e" name="4 Aminobenzoate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abz_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abz_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ABZtex" name="4 aminobenzoate extracellular to cytosol " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4abz_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4abz_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feroxB_e" name="Ferrioxamine B exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxB_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feroxBfe_e" name="Ferrioxamine B fe exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxBfe_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feroxE_e" name="Ferrioxamine E exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxE_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxE_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feroxEfe_e" name="Ferrioxamine E fe exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxEfe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxEfe_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feroxG_e" name="Ferrioxamine G exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxG_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxG_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_feroxGfe_e" name="Ferrioxamine G fe exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxGfe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxGfe_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXBFEabcpp" name="Ferrioxamine B fe transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXEFEabcpp" name="Ferrioxamine E fe transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxEfe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXGFEabcpp" name="Ferrioxamine G fe transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxGfe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXGFEtonex" name="Ferrioxamine G fe transport via ton system extermal " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0364 and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxGfe_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxGfe_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXBFEtex" name="Ferrioxamine B fe transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0364</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxBfe_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXEFEtex" name="Ferrioxamine E fe transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0364</p>
+ <p>SUBSYSTEM: Transport Outer Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxEfe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxEfe_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXGtex" name="Ferrioxamine G transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxG_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxG_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXEtex" name="Ferrioxamine E transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxE_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxE_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXBtex" name="Ferrioxamine B transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxB_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXBtpp" name="Ferrioxamine B facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxB_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXEtpp" name="Ferrioxamine E facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxE_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxE_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXGtpp" name="Ferrioxamine G facilitated transport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxG_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxG_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_drib_e" name="deoxy D Ribose exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: Exchange</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_drib_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_drib_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DRIBtpp" name="deoxy D ribose transport via proton symport periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3792</p>
+ <p>SUBSYSTEM: Transport Inner Membrane</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_drib_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_drib_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DRBK" name="deoxyribokinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3793</p>
+ <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_drib_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dr5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DRIBtex" name="deoxyribose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_drib_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_drib_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SCYSSL" name="S-sulfo-L-cysteine sulfite lyase " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_slcys_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SLCYSS" name="O-acetyl-L-serine sulfhydrylase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2440</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tsul_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_slcys_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GSHPO" name="glutathione peroxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1341</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HHDDI" name="2-hydroxyhepta-2,4-diene-1,7-dioate isomerase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1101</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2oh3d_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INOSR" name="Ketoinositol reductase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM4433 or STM4425)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2ins_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MMSAD3" name="methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4421</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_msa_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHITPH" name="chitobiose-6-phosphate hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1316</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_chit6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_D5KGK" name="2-Deoxy-5-Keto-D-gluconate kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4420</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_d5kg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_d5kgp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_D5KGPA" name="2-Deoxy-5-keto-D-gluconate 6-phosphate aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_d5kgp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_msa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHEDAA" name="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1106 and STM2289)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_24dhhed_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DKDID" name="D-2,3-Diketo 4-deoxy-epi-inositol dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dkdi_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_d5kg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2INSD" name="2-Inosose dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4424.S</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2ins_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dkdi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DTARTD" name="D-tartrate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2949</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tartr__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NMNR" name="nmn hydrolysis" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2949</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nmn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rnam_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNMK" name="ribosylnicotinamide kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4580.S</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_rnam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OACT" name="O-antigen Acetyl-Transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2232</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpo4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo5_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPAT" name="Abequosyl transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2087</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_cdpabeq_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpgrm_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo4_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPMT" name="mannosyl transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2086</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpgr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpgrm_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPRT" name="rhamnosyl transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2085</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpgr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UDCPGT" name="undecaprenol-phosphate galactosephosphotransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2082</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TCBO" name="Tricarballylate oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM0690 and STM0691)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_tcb_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYBt6ex" name="betaine (glycine betaine) transport into periplasm" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyb_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GLYBt6pp" name="betaine (glycine betaine) transport in/out via proton symport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM4290</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_glyb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHITOBex" name="Chitobiose transport into periplasm" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chitob_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_chitob_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CHITOBpts" name="Chitobiose transport via PTS" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1314 and STM1312 and STM1313 and STM2431 and STM2432)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_chitob_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_chit6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNAMtex" name="Nicotinamide riboside transport into periplasm" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rnam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rnam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_RNAMtpp" name="Nicotinamide riboside transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0757</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rnam_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rnam_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAO5t3ex" name="O-antigen unit (O5) translocase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo5_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAO5t3pp" name="O-antigen unit (O5) translocase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3926</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpo5_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TCBt2pp" name="tricarballylate transport in via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0689</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcb_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcb_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TCBt2ex" name="tricarballylate transport into periplasm" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcb_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcb_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TTONR1pp" name="Trithionate Reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1383 and STM1384 and STM1385)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tton_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TTONtex" name="Trithionate transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tton_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tton_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TTONR2pp" name="Trithionate Reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1383 and STM1384 and STM1385)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tton_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tsul_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_so3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_LEUt4rpp" name="L-leucine transport in via sodium symport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0399</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UPLA4NT" name="Undecaprenyl phosphate 4-amino-4-deoxy L-arabinose synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2298</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpLa4n_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_uLa4n_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PSUDS" name="Pseudouridylate synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2662</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_psd5p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PFOR" name="Pyruvate flavodoxin oxidoreductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ((STM0694 and STM1651) or (STM3045 and STM1651))</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_NNDMBRT" name="Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM2016 or STM1221)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dmbzid_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_5prdmbz_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_biomass_iRR1083" name="biomass equation from http://www.biomedcentral.com/1752-0509/3/38" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pro__L_c" stoichiometry="0.256971" constant="true"/>
+ <speciesReference species="M_nad_c" stoichiometry="0.00215" constant="true"/>
+ <speciesReference species="M_dctp_c" stoichiometry="0.028567" constant="true"/>
+ <speciesReference species="M_spmd_c" stoichiometry="0.007" constant="true"/>
+ <speciesReference species="M_pa2_ST_p" stoichiometry="4e-06" constant="true"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.026137" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="53.303945" constant="true"/>
+ <speciesReference species="M_succoa_c" stoichiometry="3e-06" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="5e-05" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="0.017197" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="0.374015" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.166895" constant="true"/>
+ <speciesReference species="M_pg2_ST_p" stoichiometry="0.00042" constant="true"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="0.311404" constant="true"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="0.035" constant="true"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="0.317225" constant="true"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.026137" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="5e-05" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="59.964348" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="6e-06" constant="true"/>
+ <speciesReference species="M_peptido_ST_p" stoichiometry="0.049404" constant="true"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="0.272689" constant="true"/>
+ <speciesReference species="M_udpg_c" stoichiometry="0.003" constant="true"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="0.13874" constant="true"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="0.087887" constant="true"/>
+ <speciesReference species="M_gly_c" stoichiometry="1.498961" constant="true"/>
+ <speciesReference species="M_clpn2_ST_p" stoichiometry="1.4e-05" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.00013" constant="true"/>
+ <speciesReference species="M_val__L_c" stoichiometry="0.284577" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="0.104726" constant="true"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="0.130805" constant="true"/>
+ <speciesReference species="M_5mthf_c" stoichiometry="0.05" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="0.0004" constant="true"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="0.040246" constant="true"/>
+ <speciesReference species="M_glycogen_c" stoichiometry="0.027476" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="0.256058" constant="true"/>
+ <speciesReference species="M_his__L_c" stoichiometry="0.067143" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1e-05" constant="true"/>
+ <speciesReference species="M_12dgr2_ST_p" stoichiometry="0.000188" constant="true"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.028567" constant="true"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="0.349831" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="0.748399" constant="true"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="0.087361" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="0.200228" constant="true"/>
+ <speciesReference species="M_ps2_ST_p" stoichiometry="4e-06" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="0.001" constant="true"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="0.206491" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.186332" constant="true"/>
+ <speciesReference species="M_colipaOA_e" stoichiometry="0.000937" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.154549" constant="true"/>
+ <speciesReference species="M_pe2_ST_p" stoichiometry="0.001531" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="58.266936" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="59.81" constant="true"/>
+ <speciesReference species="M_ppi_c" stoichiometry="0.771532" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="59.81" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_peptido_ST" name="peptido_ST formation reaction" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_peptido_ST_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_pe2_ST" name="membrane phosphatidylethanolamine composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe140_p" stoichiometry="14" constant="true"/>
+ <speciesReference species="M_pe180_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pe181_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_pe161_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_pe160_p" stoichiometry="76" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pe2_ST_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_pg2_ST" name="membrane phosphatidylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pg161_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_pg160_p" stoichiometry="76" constant="true"/>
+ <speciesReference species="M_pg180_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pg181_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_pg140_p" stoichiometry="14" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pg2_ST_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_clpn2_ST" name="membrane cardiolipin composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_clpn160_p" stoichiometry="76" constant="true"/>
+ <speciesReference species="M_clpn161_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_clpn140_p" stoichiometry="14" constant="true"/>
+ <speciesReference species="M_clpn181_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_clpn180_p" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_clpn2_ST_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_pa2_ST" name="membrane phosphatidate composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pa161_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_pa181_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_pa180_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_pa140_p" stoichiometry="14" constant="true"/>
+ <speciesReference species="M_pa160_p" stoichiometry="76" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pa2_ST_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ps2_ST" name="membrane phosphatidylserine composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ps181_c" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_ps140_c" stoichiometry="14" constant="true"/>
+ <speciesReference species="M_ps180_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_ps161_c" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_ps160_c" stoichiometry="76" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ps2_ST_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_12dgr2_ST" name="membrane 1-2-diacylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_12dgr161_p" stoichiometry="4" constant="true"/>
+ <speciesReference species="M_12dgr180_p" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_12dgr160_p" stoichiometry="76" constant="true"/>
+ <speciesReference species="M_12dgr181_p" stoichiometry="3" constant="true"/>
+ <speciesReference species="M_12dgr140_p" stoichiometry="14" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_12dgr2_ST_p" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAL_ST" name="O-antigen ligase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3713</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_colipaOA_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OA4L_ST" name="O-antigen 4 polymerase with long chain" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM2079)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_p" stoichiometry="25" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="24" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="24" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OA5L_ST" name="O-antigen 5 polymerase with long chain" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM2079)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_p" stoichiometry="25" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="24" constant="true"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="24" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OA4VL_ST" name="O-antigen 4 polymerase with very long chain" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM0589)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_p" stoichiometry="100" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="99" constant="true"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="99" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OA5VL_ST" name="O-antigen 5 polymerase with very long chain" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM1332 and STM0589)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_p" stoichiometry="100" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_p" stoichiometry="99" constant="true"/>
+ <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udcpdp_p" stoichiometry="99" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAO4t3pp" name="O-antigen translocase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3926</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo4_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OAO4t3ex" name="O-antigen translocase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo4_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDXtex" name="Pyridoxal transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDXtpp" name="Pyridoxal transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydx_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydx_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDXNtex" name="Pyrdoxine transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PYDXNtpp" name="Pyrdoxine transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pydxn_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pydxn_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HEXt2rpp" name="hexanoate transport via proton symport, reversible (periplasm)" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_hxa_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hxa_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4HTHRtex" name="4-hydroxy-L-threonine transport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hthr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hthr_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4HTHRtrpp" name="4-hydroxy-L-threonine transport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3243</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4hthr_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4hthr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_4HTHRK" name="4-Hydroxy-L-threonine kinase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0003</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_4hthr_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_phthr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_35PDE" name="3,5-cAMP Phosphodiesterase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_camp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_UROCANH" name="urocanate hydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_urocan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4iz5pp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AADDFT" name="4-alpha-L-fucosyltransferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3927</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_unagamu_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp4aaddg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_unagamuf_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENTERHpp" name="enterobactin hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2776</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs3_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4Hpp" name="salmochelin s4 hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2776</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4FEHpp" name="salmochelin s4 fe3 hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2776</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2fe_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBSZ3tex" name="23dhbsz secretion" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs3_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs3_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBSZ3FEexs" name="23dhbsz3 Fe III sequestration" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBSZ3FEtonex" name="23dhbsz3 Fe III import" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM2199 or STM0585 or STM2777) and (STM1737 and STM3159 and STM3158)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBSZ3FEabcpp" name="23dhbsz3 Fe III transport via ABC system periplasm" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEDHBZS3R1" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEDHBZS3R2" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEDHBZS3R3" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2tex" name="Salmochelin s2 secretion" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2FEexs" name="Salmochelin s2 Fe III sequestration" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: s0001</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2fe_e" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2FEtonex" name="Salmochelin s2 Fe III import" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2777</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs2fe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2fe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2FEabcpp" name="Salmochelin s2 Fe III transport via ABC system periplasm" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM0594 and STM0590 and STM0592 and STM0591)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs2fe_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2FER1" name="salmochelin s2 Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_salchs2_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2FER2" name="salmochelin s2 Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_salchs2_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2FER3" name="salmochelin s2 Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs2fe_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs2_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS2H" name="Salmochelin s2 hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchsx_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs1_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS1H" name="Salmochelin s1 hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs1_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchsx_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENTERH" name="enterobactin hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBZS3H" name="23DHBS polymer hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23dhbzs3_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBZS2H" name="23DHBS polymer hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENTERtex" name="Enterobactin secretion" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3186</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_enter_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENTERGLCT1" name="Glycosyl transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2773</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_entermg_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ENTERGLCT2" name="Glycosyl transferase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2773</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_entermg_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXBFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXBFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_feroxB_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXBFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxBfe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feroxB_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXEFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_feroxE_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXEFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxE_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXEFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxEfe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_feroxE_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXGFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_feroxG_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXGFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_feroxG_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEROXGFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feroxGfe_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_feroxG_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GULNLtex" name="L-gulonate transport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_guln__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_guln__L_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GULNLtpp" name="L-gulonate transport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_guln__L_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_guln__L_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GULNLR" name="L-gulonate reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_guln__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fruur_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DXYLUDtex" name="1-deoxy-d-xyluose transport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dxyl_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DXYLUDtpp" name="1-deoxy-d-xyluose transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_dxyl_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_MUREINLPPTP" name="L,D-transpeptidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: (STM0837 or STM1215 or STM1375)</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lpp_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_murein_lpp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_APOLPPS" name="lpp signal peptidase - murein" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0047</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_apolpp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lpp_sp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROLPPOATPE160" name="O-acyl Transferase - murein" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROLPPOATPG160" name="O-acyl Transferase - murein" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_PROLPPGT160" name="Glyceryl Transferase - murein" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3002</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_prolpp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DMBZIDS" name="DMB synthase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2016</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dmbzid_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_2HH24DDH1" name="2hh24dd hydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1105</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_24dhhed_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_GALCTND" name="galactonate dehydratase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3828</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_galctn__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_2dh3dgal_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDPGALA" name="2-dehydro-3-deoxy-6-phosphogalactonate aldolase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_2dh3dgal6p_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FOAMtrpp" name="Formamide transport" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_foam_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_foam_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTERR1" name="Fe enterobactin reduction Fe III unloading " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_enter_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTERR2" name="Fe enterobactin reduction Fe III unloading " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_enter_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEENTERR3" name="Fe enterobactin reduction Fe III unloading " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0586</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_feenter_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_enter_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4FER1" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4FER2" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_salchs4_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4FER3" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2775</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_salchs4_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SALCHS4FEtonex" name="Salmochelin S4 Fe III transport via ton system extracellular " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( ( STM0585 or STM2199 or STM2777 ) and ( STM1737 and STM3158 and STM3159 ) )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs4fe_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs4fe_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HISNH4L" name="Histidine ammonia lyase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM0791</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_urocan_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_AB6PGH" name="Arbutin 6 phosphate glucohydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3051</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_arbt6p_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hqn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_SARCOX" name="sarcosine oxidase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM1160</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_sarcs_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FE3HOXabcpp" name="ferric hydroxamate transport via ABC system periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_fe3hox_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMR1" name="ferroxamine reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMR2" name="ferroxamine reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_FEOXAMR3" name="ferroxamine reductase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM3979</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam_c" stoichiometry="2" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_feoxam__un_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DHBSH" name="2 3 dihydroxybenzoylserine hydrolase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_23dhb_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALPATE160pp" name="apolipoprotein N acyltransferase phosphatidylethanolamine periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0666 and STM1377 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_apolpp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpe160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lpp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_ALPATG160pp" name="apolipoprotein N acyltransferase phosphatidylglycerol periplasm " reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: ( STM0666 and STM1377 )</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_apolpp_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_2agpg160_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lpp_p" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_CYSLDS" name="L-cysteine desulfhydrase" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_INOSTtpp" name="myo-inositol transport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_inost_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_HDCAt2pp" name="Hexadecanoate transport via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2391</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OCDCAt2pp" name="Octadecanoate transport via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2392</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_OCDCEAt2pp" name="Octadecenoate transport via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2392</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_TTDCAt2pp" name="Tetradecanoate transport via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2393</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_DDCAt2pp" name="Dodecanoate transport via proton symport" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: STM2393</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_biomass_iRR1083_metals" name="biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="0.00215" constant="true"/>
+ <speciesReference species="M_ala__L_c" stoichiometry="0.748399" constant="true"/>
+ <speciesReference species="M_clpn2_ST_p" stoichiometry="1.4e-05" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="5e-05" constant="true"/>
+ <speciesReference species="M_peptido_ST_p" stoichiometry="0.049404" constant="true"/>
+ <speciesReference species="M_mg2_c" stoichiometry="0.007895" constant="true"/>
+ <speciesReference species="M_ca2_c" stoichiometry="0.004737" constant="true"/>
+ <speciesReference species="M_met__L_c" stoichiometry="0.104726" constant="true"/>
+ <speciesReference species="M_mn2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_dttp_c" stoichiometry="0.026137" constant="true"/>
+ <speciesReference species="M_nadph_c" stoichiometry="0.0004" constant="true"/>
+ <speciesReference species="M_sheme_c" stoichiometry="0.000223" constant="true"/>
+ <speciesReference species="M_ile__L_c" stoichiometry="0.087361" constant="true"/>
+ <speciesReference species="M_pg2_ST_p" stoichiometry="0.00042" constant="true"/>
+ <speciesReference species="M_fe2_c" stoichiometry="0.007106" constant="true"/>
+ <speciesReference species="M_gtp_c" stoichiometry="0.186332" constant="true"/>
+ <speciesReference species="M_pro__L_c" stoichiometry="0.256971" constant="true"/>
+ <speciesReference species="M_arg__L_c" stoichiometry="0.130805" constant="true"/>
+ <speciesReference species="M_ps2_ST_p" stoichiometry="4e-06" constant="true"/>
+ <speciesReference species="M_phe__L_c" stoichiometry="0.13874" constant="true"/>
+ <speciesReference species="M_ser__L_c" stoichiometry="0.317225" constant="true"/>
+ <speciesReference species="M_h2o_c" stoichiometry="53.303945" constant="true"/>
+ <speciesReference species="M_colipaOA_e" stoichiometry="0.000937" constant="true"/>
+ <speciesReference species="M_gly_c" stoichiometry="1.498961" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="59.964348" constant="true"/>
+ <speciesReference species="M_tyr__L_c" stoichiometry="0.040246" constant="true"/>
+ <speciesReference species="M_fad_c" stoichiometry="1e-05" constant="true"/>
+ <speciesReference species="M_cl_c" stoichiometry="0.004737" constant="true"/>
+ <speciesReference species="M_12dgr2_ST_p" stoichiometry="0.000188" constant="true"/>
+ <speciesReference species="M_coa_c" stoichiometry="6e-06" constant="true"/>
+ <speciesReference species="M_utp_c" stoichiometry="0.154549" constant="true"/>
+ <speciesReference species="M_his__L_c" stoichiometry="0.067143" constant="true"/>
+ <speciesReference species="M_cu2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_k_c" stoichiometry="0.1776" constant="true"/>
+ <speciesReference species="M_datp_c" stoichiometry="0.026137" constant="true"/>
+ <speciesReference species="M_leu__L_c" stoichiometry="0.206491" constant="true"/>
+ <speciesReference species="M_ctp_c" stoichiometry="0.166895" constant="true"/>
+ <speciesReference species="M_accoa_c" stoichiometry="5e-05" constant="true"/>
+ <speciesReference species="M_spmd_c" stoichiometry="0.007" constant="true"/>
+ <speciesReference species="M_asn__L_c" stoichiometry="0.272689" constant="true"/>
+ <speciesReference species="M_ptrc_c" stoichiometry="0.035" constant="true"/>
+ <speciesReference species="M_lys__L_c" stoichiometry="0.311404" constant="true"/>
+ <speciesReference species="M_5mthf_c" stoichiometry="0.05" constant="true"/>
+ <speciesReference species="M_mobd_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_dgtp_c" stoichiometry="0.028567" constant="true"/>
+ <speciesReference species="M_amp_c" stoichiometry="0.001" constant="true"/>
+ <speciesReference species="M_trp__L_c" stoichiometry="0.087887" constant="true"/>
+ <speciesReference species="M_udpg_c" stoichiometry="0.003" constant="true"/>
+ <speciesReference species="M_pa2_ST_p" stoichiometry="4e-06" constant="true"/>
+ <speciesReference species="M_zn2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_dctp_c" stoichiometry="0.028567" constant="true"/>
+ <speciesReference species="M_asp__L_c" stoichiometry="0.374015" constant="true"/>
+ <speciesReference species="M_cys__L_c" stoichiometry="0.017197" constant="true"/>
+ <speciesReference species="M_nadp_c" stoichiometry="0.00013" constant="true"/>
+ <speciesReference species="M_glu__L_c" stoichiometry="0.256058" constant="true"/>
+ <speciesReference species="M_glycogen_c" stoichiometry="0.027476" constant="true"/>
+ <speciesReference species="M_pe2_ST_p" stoichiometry="0.001531" constant="true"/>
+ <speciesReference species="M_val__L_c" stoichiometry="0.284577" constant="true"/>
+ <speciesReference species="M_thr__L_c" stoichiometry="0.349831" constant="true"/>
+ <speciesReference species="M_cobalt2_c" stoichiometry="0.003158" constant="true"/>
+ <speciesReference species="M_succoa_c" stoichiometry="3e-06" constant="true"/>
+ <speciesReference species="M_gln__L_c" stoichiometry="0.200228" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_ppi_c" stoichiometry="0.771532" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="59.81" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="59.81" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="58.266936" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_dxyl_e" name="dxyl_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_dxyl_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_dxyl_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_salchs2fe_e" name="salchs2fe_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2fe_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2fe_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_rnam_e" name="rnam_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_rnam_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_rnam_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_colipaOA_e" name="colipaOA_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_colipaOA_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_colipaOA_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_udcpo4_e" name="udcpo4_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo4_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo4_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tcb_e" name="tcb_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tcb_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tcb_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_fe3dhbzs3_e" name="fe3dhbzs3_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_fe3dhbzs3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_23dhbzs3_e" name="23dhbzs3_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_23dhbzs3_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_23dhbzs3_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_guln__L_e" name="guln__L_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_guln__L_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_guln__L_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_udcpo5_e" name="udcpo5_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_udcpo5_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_udcpo5_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_4hthr_e" name="4hthr_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_4hthr_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_4hthr_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_salchs2_e" name="salchs2_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_salchs2_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_salchs2_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_EX_tton_e" name="tton_e Boundary Reaction" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_tton_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_tton_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ </listOfReactions>
+ <fbc:listOfFluxBounds>
+ <fbc:fluxBound fbc:reaction="R_12DGR120tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR120tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR140tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR140tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR141tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR141tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR160tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR160tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR161tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR161tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR180tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR180tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR181tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_12DGR181tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDRtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDRtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDRtpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDStex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDStpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_12PPDStpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_14GLUCANabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_14GLUCANabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_14GLUCANtexi" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_14GLUCANtexi" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CAMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CAMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CCMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CCMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CGMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CGMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CUMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_23CUMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23DAPPAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_23DAPPAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23DAPPAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_23DAPPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE2pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE2pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE4pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE4pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE7pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE7pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE9pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_23PDE9pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_26DAHtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_26DAHtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA120tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA120tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA140tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA140tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA141tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA141tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA160tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA160tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA161tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA161tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA180tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA180tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA181tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPA181tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE120tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE120tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE140tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE140tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE141tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE141tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE160tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE160tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE161tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE161tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE180tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE180tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE181tipp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPE181tipp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPEAT120" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPEAT120" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPEAT140" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPEAT140" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPEAT141" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPEAT141" fbc:operation="lessEqual" fbc:value="1000"/>
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+ <fbc:fluxBound fbc:reaction="R_2AGPEAT160" fbc:operation="lessEqual" fbc:value="1000"/>
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+ <fbc:fluxBound fbc:reaction="R_2AGPEAT180" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2AGPEAT180" fbc:operation="lessEqual" fbc:value="1000"/>
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+ <fbc:fluxBound fbc:reaction="R_3OAR40" fbc:operation="lessEqual" fbc:value="1000"/>
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+ <fbc:fluxBound fbc:reaction="R_clpn2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_pa2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_pa2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ps2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_ps2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_12dgr2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_12dgr2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_OAL_ST" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OAL_ST" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_OA4L_ST" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OA5L_ST" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OA5L_ST" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_OA4VL_ST" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OA5VL_ST" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OA5VL_ST" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_OAO4t3pp" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OAO4t3ex" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXtex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXtpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXtpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXNtex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXNtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXNtpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PYDXNtpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_HEXt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_HEXt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_4HTHRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_4HTHRtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_4HTHRtrpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_4HTHRtrpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_4HTHRK" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_4HTHRK" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_35PDE" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_35PDE" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_UROCANH" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_AADDFT" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_AADDFT" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERHpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERHpp" fbc:operation="lessEqual" fbc:value="0.0001"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4Hpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4Hpp" fbc:operation="lessEqual" fbc:value="0.0001"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FEHpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FEHpp" fbc:operation="lessEqual" fbc:value="0.0001"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3tex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3tex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3FEexs" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3FEexs" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3FEtonex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3FEtonex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3FEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSZ3FEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEDHBZS3R1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEDHBZS3R1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEDHBZS3R2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEDHBZS3R2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEDHBZS3R3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEDHBZS3R3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2tex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2tex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FEexs" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FEexs" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FEtonex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FEtonex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FER1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FER1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FER2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FER2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FER3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2FER3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2H" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS2H" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS1H" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS1H" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERH" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERH" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DHBZS3H" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DHBZS3H" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DHBZS2H" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DHBZS2H" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERtex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERGLCT1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERGLCT1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERGLCT2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_ENTERGLCT2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXBFER1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXBFER1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXBFER2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXBFER2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXBFER3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXBFER3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXEFER1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXEFER1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXEFER2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXEFER2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXEFER3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXEFER3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXGFER1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXGFER1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXGFER2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXGFER2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXGFER3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEROXGFER3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_GULNLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_GULNLtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_GULNLtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_GULNLtpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_GULNLR" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_GULNLR" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DXYLUDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_DXYLUDtex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DXYLUDtpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DXYLUDtpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_MUREINLPPTP" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_MUREINLPPTP" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_APOLPPS" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_APOLPPS" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PROLPPOATPE160" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PROLPPOATPE160" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PROLPPOATPG160" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PROLPPOATPG160" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PROLPPGT160" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_PROLPPGT160" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DMBZIDS" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DMBZIDS" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_2HH24DDH1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_2HH24DDH1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_GALCTND" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_GALCTND" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DDPGALA" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_DDPGALA" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FOAMtrpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_FOAMtrpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEENTERR1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEENTERR1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEENTERR2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEENTERR2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEENTERR3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEENTERR3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FER1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FER1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FER2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FER2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FER3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FER3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FEtonex" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SALCHS4FEtonex" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_HISNH4L" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_AB6PGH" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_SARCOX" fbc:operation="equal" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FE3HOXabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FE3HOXabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEOXAMR1" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEOXAMR1" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEOXAMR2" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEOXAMR2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FEOXAMR3" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_FEOXAMR3" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSH" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DHBSH" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ALPATE160pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_ALPATE160pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ALPATG160pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_ALPATG160pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_CYSLDS" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_CYSLDS" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_INOSTtpp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_INOSTtpp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_HDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_HDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_OCDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OCDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_OCDCEAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_OCDCEAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_TTDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_TTDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_DDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_DDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_biomass_iRR1083_metals" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_biomass_iRR1083_metals" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_dxyl_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_dxyl_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_salchs2fe_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_salchs2fe_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_rnam_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_rnam_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_colipaOA_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_colipaOA_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_udcpo4_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_udcpo4_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_tcb_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_tcb_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_fe3dhbzs3_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_fe3dhbzs3_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_23dhbzs3_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_23dhbzs3_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_guln__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_guln__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_udcpo5_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_udcpo5_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_4hthr_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_4hthr_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_salchs2_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_salchs2_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_tton_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_tton_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ </fbc:listOfFluxBounds>
+ <fbc:listOfObjectives fbc:activeObjective="obj">
+ <fbc:objective fbc:id="obj" fbc:type="maximize">
+ <fbc:listOfFluxObjectives>
+ <fbc:fluxObjective fbc:reaction="R_biomass_iRR1083_metals" fbc:coefficient="1"/>
+ </fbc:listOfFluxObjectives>
+ </fbc:objective>
+ </fbc:listOfObjectives>
+ </model>
+</sbml>
diff --git a/cobra/test/data/update_pickles.py b/cobra/test/data/update_pickles.py
new file mode 100755
index 0000000..151453a
--- /dev/null
+++ b/cobra/test/data/update_pickles.py
@@ -0,0 +1,44 @@
+#!/usr/bin/env python
+# This script regenerates pickles of cobra Models. Should be
+# performed after updating core classes to prevent subtle bugs.
+try:
+ from cPickle import load, dump
+except:
+ from pickle import load, dump
+
+from os.path import isfile
+
+from cobra import Model
+from cobra.version import get_version
+from cobra.io import read_sbml_model, read_legacy_sbml, write_sbml_model
+from cobra.io import save_matlab_model, save_json_model
+from cobra.test import create_test_model
+
+model_names = ['salmonella', 'iJO1366',]
+
+for model_name in model_names:
+ # read in old pickle and model from sbml
+ model_pickle = model_name + '.pickle'
+ if model_name == "iJO1366":
+ new_model = read_legacy_sbml(model_name + '.xml')
+ else:
+ new_model = read_sbml_model(model_name + '.xml')
+ # update other attributes
+ if isfile(model_name + ".genes"):
+ with open(model_name + ".genes", "rb") as infile:
+ gene_names = load(infile)
+ for gene in new_model.genes:
+ gene.name = gene_names[gene.id]
+ if isfile(model_name + ".media"):
+ with open(model_name + ".media", "rb") as infile:
+ new_model.media_compositions = load(infile)
+ new_model._cobra_version = get_version()
+ # write out new pickle
+ with open(model_pickle, 'wb') as outfile:
+ dump(new_model, outfile, protocol=2)
+ # write out other formats for iJO1366
+ if model_name == "iJO1366":
+ save_matlab_model(new_model, model_name + ".mat")
+ save_json_model(new_model, model_name + ".json")
+ if model_name == "salmonella":
+ write_sbml_model(new_model, model_name + "_fbc.xml")
diff --git a/cobra/test/flux_analysis.py b/cobra/test/flux_analysis.py
new file mode 100644
index 0000000..745137f
--- /dev/null
+++ b/cobra/test/flux_analysis.py
@@ -0,0 +1,339 @@
+from unittest import TestCase, TestLoader, TextTestRunner, skipIf
+
+from warnings import warn
+import sys
+from os import name
+
+try:
+ import numpy
+except:
+ numpy = None
+
+if __name__ == "__main__":
+ sys.path.insert(0, "../..")
+ from cobra.test import create_test_model
+ from cobra import Model, Reaction, Metabolite
+ from cobra.manipulation import initialize_growth_medium
+ from cobra.solvers import solver_dict, get_solver_name
+ from cobra.manipulation import modify, delete
+ from cobra.flux_analysis.parsimonious import optimize_minimal_flux
+ from cobra.flux_analysis.variability import flux_variability_analysis
+ from cobra.flux_analysis.variability import find_blocked_reactions
+ from cobra.flux_analysis.single_deletion import single_deletion
+ from cobra.flux_analysis.loopless import construct_loopless_model
+ from cobra.external.six import iteritems
+ if numpy:
+ from cobra.flux_analysis.double_deletion import double_deletion
+ sys.path.pop(0)
+else:
+ from . import create_test_model
+ from .. import Model, Reaction, Metabolite
+ from ..manipulation import initialize_growth_medium
+ from ..solvers import solver_dict, get_solver_name
+ from ..manipulation import modify, delete
+ from ..flux_analysis.parsimonious import optimize_minimal_flux
+ from ..flux_analysis.variability import flux_variability_analysis
+ from ..flux_analysis.variability import find_blocked_reactions
+ from ..flux_analysis.single_deletion import single_deletion
+ from ..flux_analysis.loopless import construct_loopless_model
+ from ..external.six import iteritems
+ if numpy:
+ from ..flux_analysis.double_deletion import double_deletion
+
+
+class TestCobraFluxAnalysis(TestCase):
+ """Test the simulation functions in cobra.flux_analysis"""
+
+ def setUp(self):
+ self.model = create_test_model()
+
+ def test_pFBA(self):
+ model = self.model
+ for solver in solver_dict:
+ optimize_minimal_flux(model, solver=solver)
+ abs_x = [abs(i) for i in model.solution.x]
+ self.assertAlmostEqual(model.solution.f, 0.3800, places=3)
+ self.assertAlmostEqual(sum(abs_x), 343.021, places=3)
+
+ def test_modify_reversible(self):
+ model1 = self.model
+ model1.optimize()
+ model2 = create_test_model()
+ modify.convert_to_irreversible(model2)
+ model2.optimize()
+ self.assertAlmostEqual(model1.solution.f, model2.solution.f, places=3)
+ modify.revert_to_reversible(model2)
+ model2.optimize()
+ self.assertAlmostEqual(model1.solution.f, model2.solution.f, places=3)
+
+ # Ensure revert_to_reversible is robust to solutions generated both
+ # before and after reversibility conversion, or not solved at all.
+ model3 = create_test_model()
+ model3.optimize()
+ modify.convert_to_irreversible(model3)
+ modify.revert_to_reversible(model3)
+ self.assertAlmostEqual(model1.solution.f, model3.solution.f, places=3)
+
+ model4 = create_test_model()
+ modify.convert_to_irreversible(model4)
+ modify.revert_to_reversible(model4)
+
+ def test_gene_knockout_computation(self):
+ cobra_model = self.model
+
+ # helper functions for running tests
+ delete_model_genes = delete.delete_model_genes
+ find_gene_knockout_reactions = delete.find_gene_knockout_reactions
+
+ def find_gene_knockout_reactions_fast(cobra_model, gene_list):
+ compiled_rules = delete.get_compiled_gene_reaction_rules(
+ cobra_model)
+ return find_gene_knockout_reactions(
+ cobra_model, gene_list,
+ compiled_gene_reaction_rules=compiled_rules)
+
+ def get_removed(m):
+ return {x.id for x in m._trimmed_reactions}
+
+ def test_computation(m, gene_ids, expected_reaction_ids):
+ genes = [m.genes.get_by_id(i) for i in gene_ids]
+ expected_reactions = {m.reactions.get_by_id(i)
+ for i in expected_reaction_ids}
+ removed1 = set(find_gene_knockout_reactions(m, genes))
+ removed2 = set(find_gene_knockout_reactions_fast(m, genes))
+ self.assertEqual(removed1, expected_reactions)
+ self.assertEqual(removed2, expected_reactions)
+ delete.delete_model_genes(m, gene_ids, cumulative_deletions=False)
+ self.assertEqual(get_removed(m), expected_reaction_ids)
+ delete.undelete_model_genes(m)
+
+ gene_list = ['STM1067', 'STM0227']
+ dependent_reactions = {'3HAD121', '3HAD160', '3HAD80', '3HAD140',
+ '3HAD180', '3HAD100', '3HAD181', '3HAD120',
+ '3HAD60', '3HAD141', '3HAD161', 'T2DECAI',
+ '3HAD40'}
+ test_computation(cobra_model, gene_list, dependent_reactions)
+ test_computation(cobra_model, ['STM4221'], {'PGI'})
+ test_computation(cobra_model, ['STM1746.S'], {'4PEPTabcpp'})
+ # test cumulative behavior
+ delete_model_genes(cobra_model, gene_list[:1])
+ delete_model_genes(cobra_model, gene_list[1:],
+ cumulative_deletions=True)
+ delete_model_genes(cobra_model, ["STM4221"],
+ cumulative_deletions=True)
+ dependent_reactions.add('PGI')
+ self.assertEqual(get_removed(cobra_model), dependent_reactions)
+ # non-cumulative following cumulative
+ delete_model_genes(cobra_model, ["STM4221"],
+ cumulative_deletions=False)
+ self.assertEqual(get_removed(cobra_model), {'PGI'})
+ # make sure on reset that the bounds are correct
+ reset_bound = cobra_model.reactions.get_by_id("T2DECAI").upper_bound
+ self.assertEqual(reset_bound, 1000.)
+ # test computation when gene name is a subset of another
+ test_model = Model()
+ test_reaction_1 = Reaction("test1")
+ test_reaction_1.gene_reaction_rule = "eggs or (spam and eggspam)"
+ test_model.add_reaction(test_reaction_1)
+ test_computation(test_model, ["eggs"], set())
+ test_computation(test_model, ["eggs", "spam"], {'test1'})
+ # test computation with nested boolean expression
+ test_reaction_1.gene_reaction_rule = \
+ "g1 and g2 and (g3 or g4 or (g5 and g6))"
+ test_computation(test_model, ["g3"], set())
+ test_computation(test_model, ["g1"], {'test1'})
+ test_computation(test_model, ["g5"], set())
+ test_computation(test_model, ["g3", "g4", "g5"], {'test1'})
+ # test computation when gene names are python expressions
+ test_reaction_1.gene_reaction_rule = "g1 and (for or in)"
+ test_computation(test_model, ["for", "in"], {'test1'})
+ test_computation(test_model, ["for"], set())
+ test_reaction_1.gene_reaction_rule = "g1 and g2 and g2.conjugate"
+ test_computation(test_model, ["g2"], {"test1"})
+ test_computation(test_model, ["g2.conjugate"], {"test1"})
+ test_reaction_1.gene_reaction_rule = "g1 and (try:' or 'except:1)"
+ test_computation(test_model, ["try:'"], set())
+ test_computation(test_model, ["try:'", "'except:1"], {"test1"})
+
+ def test_single_deletion(self):
+ cobra_model = self.model
+ initialize_growth_medium(cobra_model, 'LB')
+
+ # Expected growth rates for the salmonella model with deletions in LB
+ the_loci = ['STM4081', 'STM0247', 'STM3867', 'STM2952']
+ the_genes = tpiA, metN, atpA, eno = map(cobra_model.genes.get_by_id,
+ the_loci)
+ id_to_name = dict([(x.id, x.name) for x in the_genes])
+ growth_dict = {'fba': {tpiA.id: 2.41, metN.id: 2.44,
+ atpA.id: 1.87, eno.id: 1.81},
+ 'moma': {tpiA.id: 1.62, metN.id: 2.4,
+ atpA.id: 1.40, eno.id: 0.33}}
+
+ # MOMA requires cplex or gurobi
+ try:
+ get_solver_name(qp=True)
+ except:
+ growth_dict.pop('moma')
+ for method, the_growth_rates in growth_dict.items():
+ element_list = the_growth_rates.keys()
+ results = single_deletion(cobra_model, element_list=element_list,
+ method=method)
+ rates = results[0]
+ statuses = results[1]
+
+ for the_gene in element_list:
+ self.assertEqual(statuses[the_gene], 'optimal')
+ self.assertAlmostEqual(rates[the_gene],
+ the_growth_rates[the_gene],
+ places=2)
+
+ def test_single_reaction_deletion(self):
+ cobra_model = self.model
+ results, status = single_deletion(
+ cobra_model, element_list=cobra_model.reactions[100:110:2],
+ element_type="reaction")
+ self.assertEqual(len(results), 5)
+ self.assertEqual(len(status), 5)
+ for status_value in status.values():
+ self.assertEqual(status_value, "optimal")
+ expected_results = {'3OAS140': 0, '3OAS160': 0.38001,
+ '3OAS180': 0.38001, '3OAS60': 0,
+ '3PEPTabcpp': 0.38001}
+ for reaction, value in results.items():
+ self.assertAlmostEqual(value, expected_results[reaction], 5)
+
+ @skipIf(numpy is None, "double deletions require numpy")
+ def test_double_deletion(self):
+ cobra_model = self.model
+ # turn into a double deletion unit test
+ initialize_growth_medium(cobra_model, 'LB')
+ # Expected growth rates for the salmonella model with deletions in LB
+ the_loci = ['STM4081', 'STM0247', 'STM3867', 'STM2952']
+ the_genes = list(map(cobra_model.genes.get_by_id, the_loci))
+ growth_dict = {}
+ growth_list = [[2.41, 2.389, 1.775, 1.81],
+ [2.389, 2.437, 1.86, 1.79],
+ [1.775, 1.86, 1.87, 1.3269],
+ [1.81, 1.79, 1.3269, 1.81]]
+ for the_gene, the_rates in zip(the_genes, growth_list):
+ growth_dict[the_gene] = dict(zip(the_genes, the_rates))
+
+ the_solution = double_deletion(cobra_model, element_list_1=the_genes,
+ element_list_2=the_genes)
+ # Potential problem if the data object doesn't have a tolist function
+ s_data = the_solution['data'].tolist()
+ s_x = the_solution['x']
+ s_y = the_solution['y']
+ for gene_x, rates_x in zip(s_x, s_data):
+ for gene_y, the_rate in zip(s_y, rates_x):
+ self.assertAlmostEqual(
+ growth_dict[gene_x][gene_y], the_rate, places=2,
+ msg="%.3f != %.3f for (%s, %s)" %
+ (growth_dict[gene_x][gene_y], the_rate,
+ gene_x.id, gene_y.id))
+
+ def test_flux_variability(self):
+ fva_results = {
+ '5DGLCNtex': {'minimum': 0.0, 'maximum': 0.0},
+ 'ABTA': {'minimum': 0.0, 'maximum': 0.0},
+ '5DOAN': {'minimum': 0.0, 'maximum': 0.0},
+ 'A5PISO': {'minimum': 0.00692, 'maximum': 0.00692},
+ 'AACPS1': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS2': {'minimum': 0.0, 'maximum': 0.0},
+ 'ACALDtex': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS3': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS4': {'minimum': 0.0, 'maximum': 0.0},
+ 'ABUTD': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS5': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS6': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS7': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS8': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACPS9': {'minimum': 0.0, 'maximum': 0.0},
+ 'AACTOOR': {'minimum': 0.0, 'maximum': 0.0},
+ 'ABUTt2pp': {'minimum': 0.0, 'maximum': 0.0},
+ '3OAS140': {'minimum': 0.50419, 'maximum': 0.50419},
+ '3OAS141': {'minimum': 0.03748, 'maximum': 0.03748},
+ '3OAS160': {'minimum': 0.41769, 'maximum': 0.41769},
+ '3OAS161': {'minimum': 0.03748, 'maximum': 0.03748},
+ '3OAS180': {'minimum': 0.01071, 'maximum': 0.01071},
+ '3OAS181': {'minimum': 0.01606, 'maximum': 0.01606},
+ 'ABUTtex': {'minimum': 0.0, 'maximum': 0.0},
+ '3OAS60': {'minimum': 0.54399, 'maximum': 0.54399},
+ '3OAS80': {'minimum': 0.54399, 'maximum': 0.54399},
+ 'AAMYL': {'minimum': 0.0, 'maximum': 0.0},
+ '3PEPTabcpp': {'minimum': 0.0, 'maximum': 0.0},
+ '3PEPTtex': {'minimum': 0.0, 'maximum': 0.0},
+ '3UMPtex': {'minimum': 0.0, 'maximum': 0.0},
+ '4HOXPACDtex': {'minimum': 0.0, 'maximum': 0.0},
+ 'ACACtex': {'minimum': 0.0, 'maximum': 0.0},
+ '4PCP': {'minimum': 0.0, 'maximum': 0.0},
+ '4PCPpp': {'minimum': 0.0, 'maximum': 0.0},
+ 'AAMYLpp': {'minimum': 0.0, 'maximum': 0.0},
+ '4PEPTabcpp': {'minimum': 0.0, 'maximum': 0.0},
+ '4PEPTtex': {'minimum': 0.0, 'maximum': 0.0},
+ '5DGLCNR': {'minimum': 0.0, 'maximum': 0.0},
+ '5DGLCNt2rpp': {'minimum': 0.0, 'maximum': 0.0},
+ 'ACALD': {'minimum': 3.35702, 'maximum': 7.49572}}
+
+ infeasible_model = create_test_model()
+ infeasible_model.reactions.get_by_id("EX_glyc_e").lower_bound = 0
+ for solver in solver_dict:
+ cobra_model = create_test_model()
+ initialize_growth_medium(cobra_model, 'LB')
+ fva_out = flux_variability_analysis(
+ cobra_model, solver=solver,
+ reaction_list=cobra_model.reactions[100:140:2])
+ for the_reaction, the_range in iteritems(fva_out):
+ for k, v in iteritems(the_range):
+ self.assertAlmostEqual(fva_results[the_reaction][k], v,
+ places=5)
+ # ensure that an infeasible model does not run FVA
+ self.assertRaises(ValueError, flux_variability_analysis,
+ infeasible_model, solver=solver)
+
+ def test_find_blocked_reactions(self):
+ m = self.model
+ result = find_blocked_reactions(m, reaction_list=m.reactions[:10])
+ self.assertEqual(len(result), 1)
+ self.assertEqual(result[0], '12PPDStex')
+
+ def test_loopless(self):
+ try:
+ solver = get_solver_name(mip=True)
+ except:
+ self.skip("no MILP solver found")
+ test_model = Model()
+ test_model.add_metabolites(Metabolite("A"))
+ test_model.add_metabolites(Metabolite("B"))
+ test_model.add_metabolites(Metabolite("C"))
+ EX_A = Reaction("EX_A")
+ EX_A.add_metabolites({test_model.metabolites.A: 1})
+ DM_C = Reaction("DM_C")
+ DM_C.add_metabolites({test_model.metabolites.C: -1})
+ v1 = Reaction("v1")
+ v1.add_metabolites({test_model.metabolites.A: -1,
+ test_model.metabolites.B: 1})
+ v2 = Reaction("v2")
+ v2.add_metabolites({test_model.metabolites.B: -1,
+ test_model.metabolites.C: 1})
+ v3 = Reaction("v3")
+ v3.add_metabolites({test_model.metabolites.C: -1,
+ test_model.metabolites.A: 1})
+ DM_C.objective_coefficient = 1
+ test_model.add_reactions([EX_A, DM_C, v1, v2, v3])
+ feasible_sol = construct_loopless_model(test_model).optimize()
+ v3.lower_bound = 1
+ infeasible_sol = construct_loopless_model(test_model).optimize()
+ self.assertEqual(feasible_sol.status, "optimal")
+ self.assertEqual(infeasible_sol.status, "infeasible")
+
+# make a test suite to run all of the tests
+loader = TestLoader()
+suite = loader.loadTestsFromModule(sys.modules[__name__])
+
+
+def test_all():
+ TextTestRunner(verbosity=2).run(suite)
+
+if __name__ == "__main__":
+ test_all()
diff --git a/cobra/test/io_tests.py b/cobra/test/io_tests.py
new file mode 100644
index 0000000..e86d202
--- /dev/null
+++ b/cobra/test/io_tests.py
@@ -0,0 +1,164 @@
+from warnings import catch_warnings
+from tempfile import gettempdir
+from os import unlink
+from os.path import join, split
+from unittest import TestCase, TestLoader, TextTestRunner, skipIf
+from functools import partial
+from pickle import load, dump
+import sys
+
+if __name__ == "__main__":
+ from cobra import io
+ from cobra.test import data_directory, create_test_model
+ from cobra.test import ecoli_mat, ecoli_pickle, ecoli_json
+ from cobra.test import salmonella_sbml, salmonella_pickle
+ from cobra.test import salmonella_fbc_sbml
+else:
+ from .. import io
+ from . import data_directory, create_test_model
+ from . import ecoli_mat, ecoli_pickle, ecoli_json
+ from . import salmonella_sbml, salmonella_pickle
+ from . import salmonella_fbc_sbml
+
+libraries = ["scipy", "libsbml", "cPickle"]
+for library in libraries:
+ try:
+ exec("import %s" % library)
+ except ImportError:
+ exec("%s = None" % library)
+
+
+class TestCobraIO(object):
+ def compare_models(self, model1, model2):
+ self.assertEqual(len(model1.reactions),
+ len(model2.reactions))
+ self.assertEqual(len(model1.metabolites),
+ len(model2.metabolites))
+ for attr in ("id", "name", "lower_bound", "upper_bound"):
+ self.assertEqual(getattr(model1.reactions[0], attr),
+ getattr(model2.reactions[0], attr))
+ self.assertEqual(getattr(model1.reactions[10], attr),
+ getattr(model2.reactions[10], attr))
+ self.assertEqual(getattr(model1.reactions[-1], attr),
+ getattr(model2.reactions[-1], attr))
+ for attr in ("id", "name", "compartment"):
+ self.assertEqual(getattr(model1.metabolites[0], attr),
+ getattr(model2.metabolites[0], attr))
+ self.assertEqual(getattr(model1.metabolites[10], attr),
+ getattr(model2.metabolites[10], attr))
+ self.assertEqual(getattr(model1.metabolites[-1], attr),
+ getattr(model2.metabolites[-1], attr))
+ self.assertEqual(len(model1.reactions[0].metabolites),
+ len(model2.reactions[0].metabolites))
+ self.assertEqual(len(model1.reactions[20].metabolites),
+ len(model2.reactions[20].metabolites))
+ self.assertEqual(len(model1.reactions[-1].metabolites),
+ len(model2.reactions[-1].metabolites))
+ # ensure they have the same solution max
+ model1.optimize()
+ model2.optimize()
+ self.assertAlmostEqual(model1.solution.f, model2.solution.f,
+ places=3)
+
+ def test_read(self):
+ read_model = self.read_function(self.test_file)
+ self.compare_models(self.test_model, read_model)
+
+ def test_read_nonexistent(self):
+ # make sure that an error is raised when given a nonexistent file
+ self.assertRaises(IOError, self.read_function, "fake_file")
+
+ def test_write_and_reread(self):
+ test_output_filename = join(gettempdir(), split(self.test_file)[-1])
+ self.write_function(self.test_model, test_output_filename)
+ reread_model = self.read_function(test_output_filename)
+ self.compare_models(self.test_model, reread_model)
+ unlink(test_output_filename)
+
+
+ at skipIf(not libsbml, "libsbml required")
+class TestCobraIOSBML(TestCase, TestCobraIO):
+ def setUp(self):
+ self.test_model = create_test_model()
+ self.test_file = salmonella_sbml
+ self.read_function = io.read_sbml_model
+ self.write_function = io.write_sbml_model
+
+
+ at skipIf(not libsbml, "libsbml required")
+class TestCobraIOSBMLfbc(TestCase, TestCobraIO):
+ def setUp(self):
+ self.test_model = create_test_model()
+ self.test_file = salmonella_fbc_sbml
+ self.read_function = io.read_sbml_model
+ self.write_function = partial(io.write_sbml_model,
+ use_fbc_package=True)
+
+
+ at skipIf(not scipy, "scipy required")
+class TestCobraIOmat(TestCase, TestCobraIO):
+ def setUp(self):
+ self.test_model = create_test_model(ecoli_pickle)
+ self.test_file = ecoli_mat
+ self.read_function = io.load_matlab_model
+ self.write_function = io.save_matlab_model
+
+
+class TestCobraIOjson(TestCase, TestCobraIO):
+ def setUp(self):
+ self.test_model = create_test_model(ecoli_pickle)
+ self.test_file = ecoli_json
+ self.read_function = io.load_json_model
+ self.write_function = io.save_json_model
+
+ def test_gene_names(self):
+ # write and reread
+ test_output_filename = join(gettempdir(), split(self.test_file)[-1])
+ gene_ids = [self.test_model.genes[n].id for n in (0, -1)]
+ self.test_model.genes.get_by_id(gene_ids[0]).name = 'new_name'
+ self.write_function(self.test_model, test_output_filename)
+ reread_model = self.read_function(test_output_filename)
+ # check gene names, ignoring order
+ for gene_id in gene_ids:
+ self.assertEqual(self.test_model.genes.get_by_id(gene_id).name,
+ reread_model.genes.get_by_id(gene_id).name)
+ unlink(test_output_filename)
+
+
+class TestCobraIOPickle(TestCase, TestCobraIO):
+ def setUp(self):
+ self.test_model = create_test_model()
+ self.test_file = salmonella_pickle
+ self.load = load
+ self.dump = dump
+
+ def read_function(filename):
+ with open(filename, "rb") as infile:
+ return self.load(infile)
+
+ def write_function(model, filename):
+ with open(filename, "wb") as outfile:
+ self.dump(model, outfile)
+
+ self.read_function = read_function
+ self.write_function = write_function
+
+
+ at skipIf(not cPickle, "cPickle required")
+class TestCobraIOcPickle(TestCobraIOPickle):
+ def setUp(self):
+ TestCobraIOPickle.setUp(self)
+ self.load = cPickle.load
+ self.dump = cPickle.dump
+
+
+# make a test suite to run all of the tests
+loader = TestLoader()
+suite = loader.loadTestsFromModule(sys.modules[__name__])
+
+
+def test_all():
+ TextTestRunner(verbosity=2).run(suite)
+
+if __name__ == "__main__":
+ test_all()
diff --git a/cobra/test/solvers.py b/cobra/test/solvers.py
new file mode 100644
index 0000000..2d62a09
--- /dev/null
+++ b/cobra/test/solvers.py
@@ -0,0 +1,289 @@
+from unittest import TestCase, TestLoader, TextTestRunner, skipIf
+import sys
+# deal with absolute imports by adding the appropriate directory to the path
+if __name__ == "__main__":
+ sys.path.insert(0, "../..")
+ from cobra.manipulation import initialize_growth_medium
+ from cobra.test import create_test_model
+ from cobra import Model, Reaction, Metabolite
+ from cobra import solvers
+ sys.path.pop(0) # remove the added directory to the path
+else:
+ from ..manipulation import initialize_growth_medium
+ from . import create_test_model
+ from .. import Model, Reaction, Metabolite
+ from .. import solvers
+
+try:
+ import scipy
+except:
+ scipy = None
+
+
+class TestCobraSolver(object):
+ def setUp(self):
+ self.solver = solvers.solver_dict[self.solver_name]
+ self.model = create_test_model()
+ initialize_growth_medium(self.model, 'MgM')
+ self.old_solution = 0.320064
+ self.infeasible_model = Model()
+ metabolite_1 = Metabolite("met1")
+ reaction_1 = Reaction("rxn1")
+ reaction_2 = Reaction("rxn2")
+ reaction_1.add_metabolites({metabolite_1: 1})
+ reaction_2.add_metabolites({metabolite_1: 1})
+ reaction_1.lower_bound = 1
+ reaction_2.upper_bound = 2
+ self.infeasible_model.add_reactions([reaction_1, reaction_2])
+
+ def test_attributes(self):
+ solver = self.solver
+ self.assertTrue(hasattr(solver, "create_problem"))
+ self.assertTrue(hasattr(solver, "solve_problem"))
+ self.assertTrue(hasattr(solver, "get_status"))
+ self.assertTrue(hasattr(solver, "get_objective_value"))
+ self.assertTrue(hasattr(solver, "format_solution"))
+ self.assertTrue(hasattr(solver, "change_variable_bounds"))
+ self.assertTrue(hasattr(solver, "change_variable_objective"))
+ self.assertTrue(hasattr(solver, "solve"))
+ self.assertTrue(hasattr(solver, "set_parameter"))
+ # self.assertTrue(hasattr(solver, "update_problem"))
+
+ def test_creation(self):
+ solver = self.solver
+ solver.create_problem(self.model)
+
+ def test_solve_feasible(self):
+ solver = self.solver
+ solution = solver.solve(self.model)
+ self.assertEqual(solution.status, "optimal")
+ self.assertAlmostEqual(self.old_solution,
+ solution.f, places=4)
+
+ def test_solve_minimize(self):
+ solver = self.solver
+ solution = solver.solve(self.model, objective_sense='minimize')
+ self.assertEqual(solution.status, "optimal")
+ self.assertAlmostEqual(0, solution.f, places=4)
+
+ def test_low_level_control(self):
+ solver = self.solver
+ lp = solver.create_problem(self.infeasible_model)
+ solver.solve_problem(lp)
+ self.assertEqual(solver.get_status(lp), "infeasible")
+ # going to make feasible
+ solver.change_variable_bounds(lp, 0, -2., 2.)
+ solver.change_variable_bounds(lp, 1, -2., 2.)
+ solver.solve_problem(lp)
+ # should now be feasible, but obj = 0
+ self.assertEqual(solver.get_status(lp), "optimal")
+ self.assertAlmostEqual(solver.get_objective_value(lp), 0, places=4)
+ # should now have obj = 2 (maximize should be the default)
+ solver.change_variable_objective(lp, 0, 1.)
+ solver.solve_problem(lp)
+ self.assertAlmostEqual(solver.get_objective_value(lp), 2, places=4)
+ # should now solve with obj = -2
+ solver.solve_problem(lp, objective_sense="minimize")
+ self.assertAlmostEqual(solver.get_objective_value(lp), -2, places=4)
+ # should now have obj = 4
+ solver.change_variable_objective(lp, 0, 2.)
+ solver.solve_problem(lp, objective_sense="maximize")
+ self.assertAlmostEqual(solver.get_objective_value(lp), 4, places=4)
+ # make sure the solution looks good still
+ solution = solver.format_solution(lp, self.infeasible_model)
+ self.assertAlmostEqual(solution.x[0], 2, places=4)
+ self.assertAlmostEqual(solution.x[1], -2, places=4)
+ self.assertAlmostEqual(solution.x_dict["rxn1"], 2, places=4)
+ self.assertAlmostEqual(solution.x_dict["rxn2"], -2, places=4)
+
+ def test_set_objective_sense(self):
+ solver = self.solver
+ maximize = solver.create_problem(self.model,
+ objective_sense="maximize")
+ minimize = solver.create_problem(self.model,
+ objective_sense="minimize")
+ solver.solve_problem(maximize)
+ solver.solve_problem(minimize)
+ max_solution = solver.format_solution(maximize, self.model)
+ min_solution = solver.format_solution(minimize, self.model)
+ self.assertAlmostEqual(0, min_solution.f, places=4)
+ self.assertAlmostEqual(self.old_solution, max_solution.f, places=4)
+ # if we set minimize at creation, can we override it at solve
+ solver.solve_problem(minimize, objective_sense="maximize")
+ override_minimize = solver.format_solution(minimize, self.model)
+ self.assertAlmostEqual(max_solution.f, override_minimize.f, places=4)
+
+ def test_solve_mip(self):
+ solver = self.solver
+ if not hasattr(solver, "_SUPPORTS_MILP") or not solver._SUPPORTS_MILP:
+ self.skipTest("no milp support")
+ cobra_model = Model('MILP_implementation_test')
+ constraint = Metabolite("constraint")
+ constraint._bound = 2.5
+ x = Reaction("x")
+ x.lower_bound = 0.
+ x.objective_coefficient = 1.
+ x.add_metabolites({constraint: 2.5})
+ y = Reaction("y")
+ y.lower_bound = 0.
+ y.objective_coefficient = 1.
+ y.add_metabolites({constraint: 1.})
+ cobra_model.add_reactions([x, y])
+ float_sol = solver.solve(cobra_model)
+ # add an integer constraint
+ y.variable_kind = "integer"
+ int_sol = solver.solve(cobra_model)
+ self.assertAlmostEqual(float_sol.f, 2.5)
+ self.assertAlmostEqual(float_sol.x_dict["y"], 2.5)
+ self.assertEqual(int_sol.status, "optimal")
+ self.assertAlmostEqual(int_sol.f, 2.2)
+ self.assertAlmostEqual(int_sol.x_dict["y"], 2.0)
+
+ def test_solve_infeasible(self):
+ solver = self.solver
+ solution = solver.solve(self.infeasible_model)
+ self.assertEqual(solution.status, "infeasible")
+
+ def test_independent_creation(self):
+ solver = self.solver
+ feasible_lp = solver.create_problem(self.model)
+ infeasible_lp = solver.create_problem(self.infeasible_model)
+ solver.solve_problem(feasible_lp)
+ solver.solve_problem(infeasible_lp)
+ feasible_solution = solver.format_solution(feasible_lp, self.model)
+ infeasible_solution = solver.format_solution(infeasible_lp,
+ self.infeasible_model)
+ self.assertEqual(feasible_solution.status, "optimal")
+ self.assertAlmostEqual(self.old_solution,
+ feasible_solution.f, places=4)
+ self.assertEqual(infeasible_solution.status, "infeasible")
+
+ def test_change_coefficient(self):
+ solver = self.solver
+ c = Metabolite("c")
+ c._bound = 6
+ x = Reaction("x")
+ x.lower_bound = 1.
+ y = Reaction("y")
+ y.lower_bound = 0.
+ x.add_metabolites({c: 1})
+ z = Reaction("z")
+ z.add_metabolites({c: 1})
+ z.objective_coefficient = 1
+ m = Model("test_model")
+ m.add_reactions([x, y, z])
+ # change an existing coefficient
+ lp = solver.create_problem(m)
+ solver.solve_problem(lp)
+ sol1 = solver.format_solution(lp, m)
+ self.assertEqual(sol1.status, "optimal")
+ solver.change_coefficient(lp, 0, 0, 2)
+ solver.solve_problem(lp)
+ sol2 = solver.format_solution(lp, m)
+ self.assertEqual(sol2.status, "optimal")
+ self.assertAlmostEqual(sol1.f, 5.0)
+ self.assertAlmostEqual(sol2.f, 4.0)
+ # change a new coefficient
+ z.objective_coefficient = 0.
+ y.objective_coefficient = 1.
+ lp = solver.create_problem(m)
+ solver.change_coefficient(lp, 0, 1, 2)
+ solver.solve_problem(lp)
+ solution = solver.format_solution(lp, m)
+ self.assertEqual(solution.status, "optimal")
+ self.assertAlmostEqual(solution.x_dict["y"], 2.5)
+
+ def test_inequality(self):
+ # The space enclosed by the constraints is a 2D triangle with
+ # vertexes as (3, 0), (1, 2), and (0, 1)
+ solver = self.solver
+ # c1 encodes y - x > 1 ==> y > x - 1
+ # c2 encodes y + x < 3 ==> y < 3 - x
+ c1 = Metabolite("c1")
+ c2 = Metabolite("c2")
+ x = Reaction("x")
+ x.lower_bound = 0
+ y = Reaction("y")
+ y.lower_bound = 0
+ x.add_metabolites({c1: -1, c2: 1})
+ y.add_metabolites({c1: 1, c2: 1})
+ c1._bound = 1
+ c1._constraint_sense = "G"
+ c2._bound = 3
+ c2._constraint_sense = "L"
+ m = Model()
+ m.add_reactions([x, y])
+ # test that optimal values are at the vertices
+ m.change_objective("x")
+ self.assertAlmostEqual(solver.solve(m).f, 1.0)
+ self.assertAlmostEqual(solver.solve(m).x_dict["y"], 2.0)
+ m.change_objective("y")
+ self.assertAlmostEqual(solver.solve(m).f, 3.0)
+ self.assertAlmostEqual(solver.solve(m, objective_sense="minimize").f,
+ 1.0)
+
+ @skipIf(scipy is None, "scipy required for quadratic objectives")
+ def test_quadratic(self):
+ solver = self.solver
+ if not hasattr(solver, "set_quadratic_objective"):
+ self.skipTest("no qp support")
+ c = Metabolite("c")
+ c._bound = 2
+ x = Reaction("x")
+ x.objective_coefficient = -0.5
+ x.lower_bound = 0.
+ y = Reaction("y")
+ y.objective_coefficient = -0.5
+ y.lower_bound = 0.
+ x.add_metabolites({c: 1})
+ y.add_metabolites({c: 1})
+ m = Model()
+ m.add_reactions([x, y])
+ lp = self.solver.create_problem(m)
+ quadratic_obj = scipy.sparse.eye(2) * 2
+ solver.set_quadratic_objective(lp, quadratic_obj)
+ solver.solve_problem(lp, objective_sense="minimize")
+ solution = solver.format_solution(lp, m)
+ # Respecting linear objectives also makes the objective value 1.
+ self.assertAlmostEqual(solution.f, 1.)
+ self.assertAlmostEqual(solution.x_dict["y"], 1.)
+ self.assertAlmostEqual(solution.x_dict["y"], 1.)
+ # When the linear objectives are removed the objective value is 2.
+ solver.change_variable_objective(lp, 0, 0.)
+ solver.change_variable_objective(lp, 1, 0.)
+ solver.solve_problem(lp, objective_sense="minimize")
+ solution = solver.format_solution(lp, m)
+ self.assertAlmostEqual(solution.f, 2.)
+ # test quadratic from solve function
+ solution = solver.solve(m, quadratic_component=quadratic_obj,
+ objective_sense="minimize")
+ self.assertAlmostEqual(solution.f, 1.)
+ c._bound = 6
+ z = Reaction("z")
+ x.objective_coefficient = 0.
+ y.objective_coefficient = 0.
+ z.lower_bound = 0.
+ z.add_metabolites({c: 1})
+ m.add_reaction(z)
+ solution = solver.solve(m, quadratic_component=scipy.sparse.eye(3),
+ objective_sense="minimize")
+ # should be 12 not 24 because 1/2 (V^T Q V)
+ self.assertAlmostEqual(solution.f, 6)
+ self.assertAlmostEqual(solution.x_dict["x"], 2)
+ self.assertAlmostEqual(solution.x_dict["y"], 2)
+ self.assertAlmostEqual(solution.x_dict["z"], 2)
+
+for solver_name in solvers.solver_dict:
+ exec('class %sTester(TestCobraSolver, TestCase): None' % solver_name)
+ exec('%sTester.solver_name = "%s"' % (solver_name, solver_name))
+
+# make a test suite to run all of the tests
+loader = TestLoader()
+suite = loader.loadTestsFromModule(sys.modules[__name__])
+
+
+def test_all():
+ TextTestRunner(verbosity=2).run(suite)
+
+if __name__ == "__main__":
+ test_all()
diff --git a/cobra/test/unit_tests.py b/cobra/test/unit_tests.py
new file mode 100644
index 0000000..f6f7003
--- /dev/null
+++ b/cobra/test/unit_tests.py
@@ -0,0 +1,563 @@
+import sys
+from unittest import TestCase, TestLoader, TextTestRunner, skipIf
+from copy import copy, deepcopy
+from pickle import loads, dumps, HIGHEST_PROTOCOL
+
+if __name__ == "__main__":
+ sys.path.insert(0, "../..")
+ from cobra.test import data_directory, create_test_model
+ from cobra.test import ecoli_mat, ecoli_pickle
+ from cobra.test import salmonella_sbml, salmonella_pickle
+ from cobra import Object, Model, Metabolite, Reaction, DictList
+ sys.path.pop(0)
+else:
+ from . import data_directory, create_test_model
+ from . import ecoli_mat, ecoli_pickle
+ from . import salmonella_sbml, salmonella_pickle
+ from .. import Object, Model, Metabolite, Reaction, DictList
+
+# libraries which may or may not be installed
+libraries = ["scipy"]
+for library in libraries:
+ try:
+ exec("import %s" % library)
+ except ImportError:
+ exec("%s = None" % library)
+
+
+class TestDictList(TestCase):
+ def setUp(self):
+ self.obj = Object("test1")
+ self.list = DictList()
+ self.list.append(self.obj)
+
+ def testContains(self):
+ self.assertIn(self.obj, self.list)
+ self.assertIn(self.obj.id, self.list)
+ self.assertNotIn(Object("not_in"), self.list)
+ self.assertNotIn('not_in', self.list)
+
+ def testIndex(self):
+ self.assertEqual(self.list.index("test1"), 0)
+ self.assertEqual(self.list.index(self.obj), 0)
+ self.assertRaises(ValueError, self.list.index, "f")
+ self.assertRaises(ValueError, self.list.index, Object("f"))
+
+ def testIndependent(self):
+ a = DictList([Object("o1"), Object("o2")])
+ b = DictList()
+ self.assertIn("o1", a)
+ self.assertNotIn("o1", b)
+ b.append(Object("o3"))
+ self.assertNotIn("o3", a)
+ self.assertIn("o3", b)
+
+ def testAppend(self):
+ obj2 = Object("test2")
+ self.list.append(obj2)
+ self.assertRaises(ValueError, self.list.append, Object("test1"))
+ self.assertEqual(self.list.index(obj2), 1)
+ self.assertEqual(self.list[1], obj2)
+ self.assertEqual(self.list.get_by_id("test2"), obj2)
+ self.assertEqual(len(self.list), 2)
+
+ def testExtend(self):
+ obj_list = [Object("test%d" % (i)) for i in range(2, 10)]
+ self.list.extend(obj_list)
+ self.assertEqual(self.list[1].id, "test2")
+ self.assertEqual(self.list.get_by_id("test2"), obj_list[0])
+ self.assertEqual(self.list[8].id, "test9")
+ self.assertEqual(len(self.list), 9)
+ self.assertRaises(ValueError, self.list.extend, [Object("test1")])
+ # Even if the object is unique, if it is present twice in the new
+ # list, it should still raise an exception
+ self.assertRaises(ValueError, self.list.extend,
+ [Object("testd"), Object("testd")])
+
+ def testIadd(self):
+ obj_list = [Object("test%d" % (i)) for i in range(2, 10)]
+ self.list += obj_list
+ self.assertEqual(self.list[1].id, "test2")
+ self.assertEqual(self.list.get_by_id("test2"), obj_list[0])
+ self.assertEqual(self.list[8].id, "test9")
+ self.assertEqual(len(self.list), 9)
+
+ def testAdd(self):
+ obj_list = [Object("test%d" % (i)) for i in range(2, 10)]
+ sum = self.list + obj_list
+ self.assertIsNot(sum, self.list)
+ self.assertIsNot(sum, obj_list)
+ self.assertEqual(self.list[0].id, "test1")
+ self.assertEqual(sum[1].id, "test2")
+ self.assertEqual(sum.get_by_id("test2"), obj_list[0])
+ self.assertEqual(sum[8].id, "test9")
+ self.assertEqual(len(self.list), 1)
+ self.assertEqual(len(sum), 9)
+
+ def testInitCopy(self):
+ self.list.append(Object("test2"))
+ copied = DictList(self.list)
+ self.assertIsNot(self.list, copied)
+ self.assertIsInstance(copied, self.list.__class__)
+ self.assertEqual(len(self.list), len(copied))
+ for i, v in enumerate(self.list):
+ self.assertEqual(self.list[i].id, copied[i].id)
+ self.assertEqual(i, copied.index(v.id))
+ self.assertIs(self.list[i], copied[i])
+ self.assertIs(v, copied.get_by_id(v.id))
+
+ def testSlice(self):
+ self.list.append(Object("test2"))
+ self.list.append(Object("test3"))
+ sliced = self.list[:-1]
+ self.assertIsNot(self.list, sliced)
+ self.assertIsInstance(sliced, self.list.__class__)
+ self.assertEqual(len(self.list), len(sliced) + 1)
+ for i, v in enumerate(sliced):
+ self.assertEqual(self.list[i].id, sliced[i].id)
+ self.assertEqual(i, sliced.index(v.id))
+ self.assertIs(self.list[i], sliced[i])
+ self.assertIs(self.list[i], sliced.get_by_id(v.id))
+
+ def testCopy(self):
+ self.list.append(Object("test2"))
+ copied = copy(self.list)
+ self.assertIsNot(self.list, copied)
+ self.assertIsInstance(copied, self.list.__class__)
+ self.assertEqual(len(self.list), len(copied))
+ for i, v in enumerate(self.list):
+ self.assertEqual(self.list[i].id, copied[i].id)
+ self.assertEqual(i, copied.index(v.id))
+ self.assertIs(self.list[i], copied[i])
+ self.assertIs(v, copied.get_by_id(v.id))
+
+ def testDeepcopy(self):
+ self.list.append(Object("test2"))
+ copied = deepcopy(self.list)
+ self.assertIsNot(self.list, copied)
+ self.assertIsInstance(copied, self.list.__class__)
+ self.assertEqual(len(self.list), len(copied))
+ for i, v in enumerate(self.list):
+ self.assertEqual(self.list[i].id, copied[i].id)
+ self.assertEqual(i, copied.index(v.id))
+ self.assertIsNot(self.list[i], copied[i])
+ self.assertIsNot(v, copied.get_by_id(v.id))
+
+ def testPickle(self):
+ self.list.append(Object("test2"))
+ for protocol in range(HIGHEST_PROTOCOL):
+ pickle_str = dumps(self.list, protocol=protocol)
+ copied = loads(pickle_str)
+ self.assertIsNot(self.list, copied)
+ self.assertIsInstance(copied, self.list.__class__)
+ self.assertEqual(len(self.list), len(copied))
+ for i, v in enumerate(self.list):
+ self.assertEqual(self.list[i].id, copied[i].id)
+ self.assertEqual(i, copied.index(v.id))
+ self.assertIsNot(self.list[i], copied[i])
+ self.assertIsNot(v, copied.get_by_id(v.id))
+
+ def testQuery(self):
+ obj2 = Object("test2")
+ self.list.append(obj2)
+ result = self.list.query("test1") # matches only test1
+ self.assertEqual(len(result), 1)
+ self.assertEqual(result[0], self.obj)
+ result = self.list.query("test") # matches test1 and test2
+ self.assertEqual(len(result), 2)
+
+ def testRemoval(self):
+ obj_list = DictList(Object("test%d" % (i)) for i in range(2, 10))
+ del obj_list[3]
+ self.assertNotIn("test5", obj_list)
+ self.assertEqual(obj_list.index(obj_list[-1]), len(obj_list) - 1)
+ del obj_list[3:5]
+ self.assertNotIn("test6", obj_list)
+ self.assertNotIn("test7", obj_list)
+ self.assertEqual(obj_list.index(obj_list[-1]), len(obj_list) - 1)
+ removed = obj_list.pop(1)
+ self.assertEqual(obj_list.index(obj_list[-1]), len(obj_list) - 1)
+ self.assertEqual(removed.id, "test3")
+ self.assertNotIn("test3", obj_list)
+
+ def testSet(self):
+ obj_list = DictList(Object("test%d" % (i)) for i in range(10))
+ obj_list[4] = Object("testa")
+ self.assertEqual(obj_list.index("testa"), 4)
+ self.assertEqual(obj_list[4].id, "testa")
+ obj_list[5:7] = [Object("testb"), Object("testc")]
+ self.assertEqual(obj_list.index("testb"), 5)
+ self.assertEqual(obj_list[5].id, "testb")
+ self.assertEqual(obj_list.index("testc"), 6)
+ self.assertEqual(obj_list[6].id, "testc")
+ # Even if the object is unique, if it is present twice in the new
+ # list, it should still raise an exception
+ self.assertRaises(ValueError, obj_list.__setitem__, slice(5, 7),
+ [Object("testd"), Object("testd")])
+
+
+class CobraTestCase(TestCase):
+ def setUp(self):
+ self.model = create_test_model()
+ self.model_class = Model
+
+
+class TestReactions(CobraTestCase):
+ def testGPR(self):
+ model = self.model_class()
+ reaction = Reaction("test")
+ # set a gpr to reaction not in a model
+ reaction.gene_reaction_rule = "(g1 or g2) and g3"
+ self.assertEqual(reaction.gene_reaction_rule, "(g1 or g2) and g3")
+ self.assertEqual(len(reaction.genes), 3)
+ # adding reaction with a GPR propagates to the model
+ model.add_reaction(reaction)
+ self.assertEqual(len(model.genes), 3)
+ # ensure the gene objects are the same in the model and reaction
+ reaction_gene = list(reaction.genes)[0]
+ model_gene = model.genes.get_by_id(reaction_gene.id)
+ self.assertIs(reaction_gene, model_gene)
+
+ def testGPR_modification(self):
+ model = self.model
+ reaction = model.reactions.get_by_id("PGI")
+ old_gene = list(reaction.genes)[0]
+ old_gene_reaction_rule = reaction.gene_reaction_rule
+ new_gene = model.genes.get_by_id("s0001")
+ # add an existing 'gene' to the gpr
+ reaction.gene_reaction_rule = 's0001'
+ self.assertIn(new_gene, reaction.genes)
+ self.assertIn(reaction, new_gene.reactions)
+ # removed old gene correctly
+ self.assertNotIn(old_gene, reaction.genes)
+ self.assertNotIn(reaction, old_gene.reactions)
+ # add a new 'gene' to the gpr
+ reaction.gene_reaction_rule = 'fake_gene'
+ self.assertTrue(model.genes.has_id("fake_gene"))
+ fake_gene = model.genes.get_by_id("fake_gene")
+ self.assertIn(fake_gene, reaction.genes)
+ self.assertIn(reaction, fake_gene.reactions)
+
+ def test_add_metabolite(self):
+ """adding a metabolite to a reaction in a model"""
+ model = self.model
+ reaction = model.reactions.get_by_id("PGI")
+ reaction.add_metabolites({model.metabolites[0]: 1})
+ self.assertIn(model.metabolites[0], reaction.metabolites)
+ fake_metabolite = Metabolite("fake")
+ reaction.add_metabolites({fake_metabolite: 1})
+ self.assertIn(fake_metabolite, reaction.metabolites)
+ self.assertTrue(model.metabolites.has_id("fake"))
+ self.assertIs(model.metabolites.get_by_id("fake"), fake_metabolite)
+
+ def test_subtract_metabolite(self):
+ model = self.model
+ reaction = model.reactions.get_by_id("PGI")
+ reaction.subtract_metabolites(reaction.metabolites)
+ self.assertEqual(len(reaction.metabolites), 0)
+
+ def test_build_from_string(self):
+ model = self.model
+ pgi = model.reactions.get_by_id("PGI")
+ pgi.reaction = "g6p_c --> f6p_c"
+ self.assertEqual(pgi.lower_bound, 0)
+ pgi.reaction = "g6p_c <== f6p_c"
+ self.assertEqual(pgi.upper_bound, 0)
+ pgi.reaction = "g6p_c --> f6p_c + h2o_c"
+ self.assertIn(model.metabolites.h2o_c, pgi._metabolites)
+ pgi.build_reaction_from_string("g6p_c --> f6p_c + foo", verbose=False)
+ self.assertNotIn(model.metabolites.h2o_c, pgi._metabolites)
+ self.assertIn("foo", model.metabolites)
+ self.assertIn(model.metabolites.foo, pgi._metabolites)
+ self.assertEqual(len(model.metabolites), 1803)
+
+
+class TestCobraModel(CobraTestCase):
+ """test core cobra functions"""
+
+ def test_add_reaction(self):
+ old_reaction_count = len(self.model.reactions)
+ old_metabolite_count = len(self.model.metabolites)
+ dummy_metabolite_1 = Metabolite("test_foo_1")
+ dummy_metabolite_2 = Metabolite("test_foo_2")
+ actual_metabolite = self.model.metabolites[0]
+ copy_metabolite = self.model.metabolites[1].copy()
+ dummy_reaction = Reaction("test_foo_reaction")
+ dummy_reaction.add_metabolites({dummy_metabolite_1: -1,
+ dummy_metabolite_2: 1,
+ copy_metabolite: -2,
+ actual_metabolite: 1})
+ self.model.add_reaction(dummy_reaction)
+ self.assertEqual(self.model.reactions.get_by_id(dummy_reaction.id),
+ dummy_reaction)
+ for x in [dummy_metabolite_1, dummy_metabolite_2]:
+ self.assertEqual(self.model.metabolites.get_by_id(x.id), x)
+ # should have added 1 reaction and 2 metabolites
+ self.assertEqual(len(self.model.reactions), old_reaction_count + 1)
+ self.assertEqual(len(self.model.metabolites), old_metabolite_count + 2)
+ # tests on theadded reaction
+ reaction_in_model = self.model.reactions.get_by_id(dummy_reaction.id)
+ self.assertIs(type(reaction_in_model), Reaction)
+ self.assertIs(reaction_in_model, dummy_reaction)
+ self.assertEqual(len(reaction_in_model._metabolites), 4)
+ for i in reaction_in_model._metabolites:
+ self.assertEqual(type(i), Metabolite)
+ # tests on the added metabolites
+ met1_in_model = self.model.metabolites.get_by_id(dummy_metabolite_1.id)
+ self.assertIs(met1_in_model, dummy_metabolite_1)
+ copy_in_model = self.model.metabolites.get_by_id(copy_metabolite.id)
+ self.assertIsNot(copy_metabolite, copy_in_model)
+ self.assertIs(type(copy_in_model), Metabolite)
+ self.assertTrue(dummy_reaction in actual_metabolite._reaction)
+ # test adding a different metabolite with the same name as an
+ # existing one uses the metabolite in the model
+ r2 = Reaction("test_foo_reaction2")
+ self.model.add_reaction(r2)
+ r2.add_metabolites({Metabolite(self.model.metabolites[0].id): 1})
+ self.assertIs(self.model.metabolites[0], list(r2._metabolites)[0])
+
+ def test_add_reaction_from_other_model(self):
+ model = self.model
+ other = model.copy()
+ for i in other.reactions:
+ i.id += "_other"
+ other.reactions._generate_index()
+ model.add_reactions(other.reactions)
+
+ def test_model_remove_reaction(self):
+ old_reaction_count = len(self.model.reactions)
+ self.model.remove_reactions(["PGI"])
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 1)
+ with self.assertRaises(KeyError):
+ self.model.reactions.get_by_id("PGI")
+ self.model.remove_reactions(self.model.reactions[:1])
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 2)
+ tmp_metabolite = Metabolite("testing")
+ self.model.reactions[0].add_metabolites({tmp_metabolite: 1})
+ self.assertIn(tmp_metabolite, self.model.metabolites)
+ self.model.remove_reactions(self.model.reactions[:1],
+ remove_orphans=True)
+ self.assertNotIn(tmp_metabolite, self.model.metabolites)
+
+ def test_reaction_remove(self):
+ model = self.model
+ old_reaction_count = len(model.reactions)
+ tmp_metabolite = Metabolite("testing")
+ # Delete without removing orphan
+ model.reactions[0].add_metabolites({tmp_metabolite: 1})
+ self.assertEqual(len(tmp_metabolite.reactions), 1)
+ # esnsure the stoichiometry is still the same using different objects
+ removed_reaction = model.reactions[0]
+ original_stoich = {i.id: value for i, value
+ in removed_reaction._metabolites.items()}
+ model.reactions[0].remove_from_model(remove_orphans=False)
+ self.assertEqual(len(original_stoich),
+ len(removed_reaction._metabolites))
+ for met in removed_reaction._metabolites:
+ self.assertEqual(original_stoich[met.id],
+ removed_reaction._metabolites[met])
+ self.assertIsNot(met, model.metabolites)
+ # make sure it's still in the model
+ self.assertIn(tmp_metabolite, model.metabolites)
+ self.assertEqual(len(tmp_metabolite.reactions), 0)
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 1)
+
+ # Now try it with removing orphans
+ model.reactions[0].add_metabolites({tmp_metabolite: 1})
+ self.assertEqual(len(tmp_metabolite.reactions), 1)
+ model.reactions[0].remove_from_model(remove_orphans=True)
+ self.assertNotIn(tmp_metabolite, model.metabolites)
+ self.assertEqual(len(tmp_metabolite.reactions), 0)
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 2)
+
+ # It shouldn't remove orphans if it's in 2 reactions however
+ model.reactions[0].add_metabolites({tmp_metabolite: 1})
+ model.reactions[1].add_metabolites({tmp_metabolite: 1})
+ self.assertEqual(len(tmp_metabolite.reactions), 2)
+ model.reactions[0].remove_from_model(remove_orphans=False)
+ self.assertIn(tmp_metabolite, model.metabolites)
+ self.assertEqual(len(tmp_metabolite.reactions), 1)
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 3)
+
+ def test_reaction_delete(self):
+ model = self.model
+ old_reaction_count = len(model.reactions)
+ tmp_metabolite = Metabolite("testing")
+ # Delete without removing orphan
+ model.reactions[0].add_metabolites({tmp_metabolite: 1})
+ self.assertEqual(len(tmp_metabolite.reactions), 1)
+ model.reactions[0].delete(remove_orphans=False)
+ # make sure it's still in the model
+ self.assertIn(tmp_metabolite, model.metabolites)
+ self.assertEqual(len(tmp_metabolite.reactions), 0)
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 1)
+
+ # Now try it with removing orphans
+ model.reactions[0].add_metabolites({tmp_metabolite: 1})
+ self.assertEqual(len(tmp_metabolite.reactions), 1)
+ model.reactions[0].delete(remove_orphans=True)
+ self.assertNotIn(tmp_metabolite, model.metabolites)
+ self.assertEqual(len(tmp_metabolite.reactions), 0)
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 2)
+
+ # It shouldn't remove orphans if it's in 2 reactions however
+ model.reactions[0].add_metabolites({tmp_metabolite: 1})
+ model.reactions[1].add_metabolites({tmp_metabolite: 1})
+ self.assertEqual(len(tmp_metabolite.reactions), 2)
+ model.reactions[0].delete(remove_orphans=False)
+ self.assertIn(tmp_metabolite, model.metabolites)
+ self.assertEqual(len(tmp_metabolite.reactions), 1)
+ self.assertEqual(len(self.model.reactions), old_reaction_count - 3)
+
+ def test_remove_gene(self):
+ target_gene = self.model.genes[0]
+ gene_reactions = list(target_gene.reactions)
+ target_gene.remove_from_model()
+ self.assertEqual(target_gene.model, None)
+ # make sure the reaction was removed from the model
+ self.assertNotIn(target_gene, self.model.genes)
+ # ensure the old reactions no longer have a record of the gene
+ for reaction in gene_reactions:
+ self.assertNotIn(target_gene, reaction.genes)
+
+ def test_copy(self):
+ """modifying copy should not modify the original"""
+ # test that deleting reactions in the copy does not change the
+ # number of reactions in the original model
+ model_copy = self.model.copy()
+ old_reaction_count = len(self.model.reactions)
+ self.assertEqual(len(self.model.reactions), len(model_copy.reactions))
+ self.assertEqual(len(self.model.metabolites),
+ len(model_copy.metabolites))
+ model_copy.remove_reactions(model_copy.reactions[0:5])
+ self.assertEqual(old_reaction_count, len(self.model.reactions))
+ self.assertNotEqual(len(self.model.reactions),
+ len(model_copy.reactions))
+
+ def test_deepcopy(self):
+ """Reference structures are maintained when deepcopying"""
+ model_copy = deepcopy(self.model)
+ for gene, gene_copy in zip(self.model.genes, model_copy.genes):
+ self.assertEqual(gene.id, gene_copy.id)
+ reactions = sorted(i.id for i in gene.reactions)
+ reactions_copy = sorted(i.id for i in gene_copy.reactions)
+ self.assertEqual(reactions, reactions_copy)
+ for reaction, reaction_copy in zip(self.model.reactions,
+ model_copy.reactions):
+ self.assertEqual(reaction.id, reaction_copy.id)
+ metabolites = sorted(i.id for i in reaction._metabolites)
+ metabolites_copy = sorted(i.id for i in reaction_copy._metabolites)
+ self.assertEqual(metabolites, metabolites_copy)
+
+ def test_add_reaction_orphans(self):
+ """test reaction addition
+
+ Need to verify that no orphan genes or metabolites are
+ contained in reactions after adding them to the model.
+ """
+ _model = self.model_class('test')
+ _model.add_reactions([x.copy() for x in self.model.reactions])
+ _genes = []
+ _metabolites = []
+ for x in _model.reactions:
+ _genes.extend(x.genes)
+ _metabolites.extend(x.metabolites)
+
+ orphan_genes = [x for x in _genes if x.model is not _model]
+ orphan_metabolites = [x for x in _metabolites if x.model is not _model]
+ self.assertEqual(len(orphan_genes), 0,
+ msg='It looks like there are dangling genes when '
+ 'running Model.add_reactions')
+ self.assertEqual(len(orphan_metabolites), 0,
+ msg='It looks like there are dangling metabolites '
+ 'when running Model.add_reactions')
+
+ def test_change_objective(self):
+ biomass = self.model.reactions.get_by_id("biomass_iRR1083_metals")
+ atpm = self.model.reactions.get_by_id("ATPM")
+ self.model.change_objective(atpm.id)
+ self.assertEqual(atpm.objective_coefficient, 1.)
+ self.assertEqual(biomass.objective_coefficient, 0.)
+ # change it back using object itself
+ self.model.change_objective(biomass)
+ self.assertEqual(atpm.objective_coefficient, 0.)
+ self.assertEqual(biomass.objective_coefficient, 1.)
+ # set both to 1 with a list
+ self.model.change_objective([atpm, biomass])
+ self.assertEqual(atpm.objective_coefficient, 1.)
+ self.assertEqual(biomass.objective_coefficient, 1.)
+ # set both using a dict
+ self.model.change_objective({atpm: 0.2, biomass: 0.3})
+ self.assertEqual(atpm.objective_coefficient, 0.2)
+ self.assertEqual(biomass.objective_coefficient, 0.3)
+
+
+ at skipIf(scipy is None, "scipy required for ArrayBasedModel")
+class TestCobraArrayModel(TestCobraModel):
+ def setUp(self):
+ model = create_test_model().to_array_based_model()
+ self.model_class = model.__class__
+ self.model = model
+
+ def test_array_based_model(self):
+ assertEqual = self.assertEqual # alias
+ for matrix_type in ["scipy.dok_matrix", "scipy.lil_matrix"]:
+ model = create_test_model().\
+ to_array_based_model(matrix_type=matrix_type)
+ self.assertEqual(model.S[1605, 0], -1)
+ self.assertEqual(model.S[43, 0], 0)
+ model.S[43, 0] = 1
+ self.assertEqual(model.S[43, 0], 1)
+ self.assertEqual(
+ model.reactions[0].metabolites[model.metabolites[43]], 1)
+ model.S[43, 0] = 0
+ assertEqual(model.lower_bounds[0], model.reactions[0].lower_bound)
+ assertEqual(model.lower_bounds[5], model.reactions[5].lower_bound)
+ assertEqual(model.upper_bounds[0], model.reactions[0].upper_bound)
+ assertEqual(model.upper_bounds[5], model.reactions[5].upper_bound)
+ model.lower_bounds[6] = 2
+ self.assertEqual(model.lower_bounds[6], 2)
+ self.assertEqual(model.reactions[6].lower_bound, 2)
+ # this should fail because it is the wrong size
+ with self.assertRaises(Exception):
+ model.upper_bounds = [0, 1]
+ model.upper_bounds = [0] * len(model.reactions)
+ self.assertEqual(max(model.upper_bounds), 0)
+
+ def test_array_based_model_add(self):
+ for matrix_type in ["scipy.dok_matrix", "scipy.lil_matrix"]:
+ model = create_test_model().\
+ to_array_based_model(matrix_type=matrix_type)
+ test_reaction = Reaction("test")
+ test_reaction.add_metabolites({model.metabolites[0]: 4})
+ test_reaction.lower_bound = -3.14
+ model.add_reaction(test_reaction)
+ self.assertEqual(len(model.reactions), 2547)
+ self.assertEqual(model.S.shape[1], 2547)
+ self.assertEqual(len(model.lower_bounds), 2547)
+ self.assertEqual(model.S[0, 2546], 4)
+ self.assertEqual(model.S[1605, 0], -1)
+ self.assertEqual(model.lower_bounds[2546], -3.14)
+
+ def test_array_based_select(self):
+ model = self.model
+ atpm_select = model.reactions[model.lower_bounds > 0]
+ self.assertEqual(len(atpm_select), 1)
+ self.assertEqual(atpm_select[0].id, "ATPM")
+ self.assertEqual(len(model.reactions[model.lower_bounds <= 0]),
+ len(model.reactions) - 1)
+ # mismatched dimensions should give an error
+ with self.assertRaises(TypeError):
+ model.reactions[[True, False]]
+
+
+# make a test suite to run all of the tests
+loader = TestLoader()
+suite = loader.loadTestsFromModule(sys.modules[__name__])
+
+
+def test_all():
+ TextTestRunner(verbosity=2).run(suite)
+
+if __name__ == "__main__":
+ test_all()
diff --git a/cobra/test_all.py b/cobra/test_all.py
new file mode 100755
index 0000000..2d7ee0b
--- /dev/null
+++ b/cobra/test_all.py
@@ -0,0 +1,7 @@
+#!/usr/bin/env python
+assert __name__ == "__main__"
+from os.path import abspath, split, join
+import sys
+sys.path.insert(0, abspath(join(split(__file__)[0], "..")))
+from cobra.test import test_all
+test_all()
diff --git a/cobra/topology/__init__.py b/cobra/topology/__init__.py
new file mode 100644
index 0000000..03a7c46
--- /dev/null
+++ b/cobra/topology/__init__.py
@@ -0,0 +1,9 @@
+from os import name as __name
+from sys import modules as __modules
+from warnings import warn
+if __name == 'java':
+ warn("%s is not yet supported on jython"%__modules[__name__])
+
+else:
+ from reporter_metabolites import *
+del __name, __modules
diff --git a/cobra/topology/reporter_metabolites.py b/cobra/topology/reporter_metabolites.py
new file mode 100644
index 0000000..9291626
--- /dev/null
+++ b/cobra/topology/reporter_metabolites.py
@@ -0,0 +1,165 @@
+#cobra.topology.reporter_metabolites.py: Module for topological analysis of cobra_models
+#Based on Patil et al 2005 PNAS 102:2685-9
+#TODO: Validate cobra.core compliance
+from copy import deepcopy
+from numpy import array, corrcoef, mean, std, tril, where, unique, zeros
+from scipy.stats import norm, randint
+from collections import defaultdict
+
+def identify_reporter_metabolites(cobra_model, reaction_scores_dict,
+ number_of_randomizations=1000, number_of_layers=1,
+ scoring_metric='default', score_type='p',
+ entire_network=False, background_correction=True,
+ ignore_external_boundary_reactions=False):
+ """Calculate the aggregate Z-score for the metabolites in the model.
+ Ignore reactions that are solely spontaneous or orphan. Allow the scores to
+ have multiple columns / experiments. This will change the way the output
+ is represented.
+
+ cobra_model: A cobra.Model object
+
+ TODO: CHANGE TO USING DICTIONARIES for the_reactions: the_scores
+
+ reaction_scores_dict: A dictionary where the keys are reactions in cobra_model.reactions
+ and the values are the scores. Currently, only supports a single numeric value as
+ the value; however, this will be updated to allow for lists
+
+ number_of_randomizations: Integer. Number of random shuffles of the
+ scores to assess which are significant.
+
+ number_of_layers: 1 is the only option supported
+
+ scoring_metric: default means divide by k**0.5
+
+ score_type: 'p' Is the only option at the moment and indicates p-value.
+
+ entire_network: Boolean. Currently, only compares scores calculated from the_reactions
+
+ background_correction: Boolean. If True apply background correction to the aggreagate
+ Z-score
+
+ ignore_external_boundary_reactions: Not yet implemented. Boolean. If True do not count exchange reactions when
+ calculating the score.
+
+
+
+
+ """
+ #Add in a function to calculate based on correlation coefficients and to
+ #deal with other multidimensional data.
+ the_reactions = reaction_scores_dict.keys()
+ the_scores = reaction_scores_dict.values()
+ if score_type == 'p' and not hasattr(the_scores[0], '__iter__'):
+ #minimum and maximum p-values are used to prevent numerical problems.
+ #haven't decided whether an arbitrary min / max 1e-15 is preferred to
+ #blunting the ends based on the values closest to 0 or 1.
+ the_reactions = reaction_scores_dict.keys()
+ the_scores = array(reaction_scores_dict.values())
+ minimum_p = min(the_scores[the_scores.nonzero()[0]])
+ maximum_p = max(the_scores[where(the_scores < 1)[0]])
+ the_scores[where(the_scores < minimum_p)] = minimum_p
+ the_scores[where(the_scores > maximum_p)] = maximum_p
+ the_scores = -norm.ppf(the_scores)
+ #update the dictionary with the new scores
+ reaction_scores_dict = dict(zip(the_reactions, the_scores))
+ elif hasattr(the_scores[0], '__iter__'):
+ #In the case that the_scores is a list of lists, assume that each list is
+ #the score for each reaction in the_reactions across all reactions. Then
+ #for each metabolite, calculate the invnorm(|Pearson Correlation
+ #Coefficient| for each reaction pair that it links.
+ raise Exception("This isn't implemented yet")
+
+ #Get the connectivity for each metabolite
+ the_metabolites = set()
+ [the_metabolites.update(x._metabolites)
+ for x in reaction_scores_dict];
+
+ metabolite_scores = {}
+ metabolite_connections = {}
+ #Calculate the score for each metabolite
+ for the_metabolite in the_metabolites:
+ nonspontaneous_connections = [x for x in the_metabolite._reaction
+ if x.gene_reaction_rule.lower() not in
+ ['s0001', '']]
+ tmp_score = 0
+ number_of_connections = len(nonspontaneous_connections)
+ for the_reaction in nonspontaneous_connections:
+ if the_reaction not in reaction_scores_dict:
+ if not entire_network:
+ number_of_connections -= 1
+ continue
+ else:
+ tmp_score += reaction_scores_dict[the_reaction]
+ metabolite_scores[the_metabolite] = tmp_score
+ metabolite_connections[the_metabolite] = number_of_connections
+
+ #NOTE: Doing the corrections based only on the significantly perturbed scores
+ #is probably going to underestimate the significance.
+ if background_correction:
+ correction_dict = {}
+ for i in set(metabolite_connections.values()):
+ #if entire_network # add in a section to deal with the situation where
+ #the entire network structure is considered by only have p-values for
+ #a limited subset.
+ #
+ #Basically, what we're doing here is that for each i we select i
+ #scores number_of_randomizations times
+ the_random_indices = randint.rvs(0,len(the_scores), size=(number_of_randomizations, i))
+ random_score_distribution = array([sum(the_scores[x]) for x in list(the_random_indices)]) /i**0.5
+ correction_dict[i] = [mean(random_score_distribution),
+ std(random_score_distribution,ddof=1)]
+
+ for the_metabolite, the_score in metabolite_scores.iteritems():
+ number_of_connections = metabolite_connections[the_metabolite]
+ if number_of_connections > 0:
+ #Correct based on background distribution
+ if background_correction:
+ #if the list of scores is only for significant perturbations then the
+ #background correction shouldn't be applied because the current sampling
+ #method only takes into account the_scores not the entire network.
+ #It'd be more accurate to assign unscored reactions a default score.
+ the_score = ((the_score / number_of_connections**.5) -
+ correction_dict[number_of_connections][0]) / \
+ correction_dict[number_of_connections][1]
+ else:
+ the_score = the_score / number_of_connections**.5
+ #Update the score
+ metabolite_scores[the_metabolite] = the_score
+
+
+
+ return_dictionary = {'scores': metabolite_scores,
+ 'connections': metabolite_connections}
+ if background_correction:
+ return_dictionary['corrections'] = correction_dict
+
+ return(return_dictionary)
+
+def ppmap_identify_reporter_metabolites(keywords):
+ """
+ A function that receives a dict with all of the parameters for identify_reporter_metabolites
+ Serves to make it possible to call the reporter metabolites function from ppmap.
+ It only will be useful for parallel experiments not for breaking up a single experiment.
+
+ """
+ the_results = identify_reporter_metabolites(**keywords)
+ return({'id': the_id, 'results': the_results })
+
+if __name__ == '__main__':
+ from cPickle import load
+ from time import time
+ solver = 'glpk'
+ from cobra.test import salmonella_pickle, salmonella_reaction_p_values_pickle
+ with open(salmonella_pickle) as in_file:
+ cobra_model = load(in_file)
+ with open(salmonella_reaction_p_values_pickle) as in_file:
+ reaction_p = load(in_file)
+
+ the_reactions = map(cobra_model.reactions.get_by_id, reaction_p.keys())
+ the_scores = reaction_p.values()
+ reaction_scores_dict = dict(zip(the_reactions, the_scores))
+
+ tmp_reps = identify_reporter_metabolites(cobra_model, reaction_scores_dict,
+ background_correction=True)
+
+ print 'Need to add in validation for the test'
diff --git a/cobra/version.py b/cobra/version.py
new file mode 100644
index 0000000..14cc2d9
--- /dev/null
+++ b/cobra/version.py
@@ -0,0 +1,133 @@
+#!/usr/bin/env python
+"""Get version identification from git
+
+See the documentation of get_version for more information
+
+"""
+from __future__ import print_function
+
+from subprocess import check_output, CalledProcessError
+from os import path, name, devnull, environ, listdir
+
+__all__ = ("get_version",)
+
+CURRENT_DIRECTORY = path.dirname(path.abspath(__file__))
+VERSION_FILE = path.join(CURRENT_DIRECTORY, "VERSION")
+
+GIT_COMMAND = "git"
+
+if name == "nt":
+ def find_git_on_windows():
+ """find the path to the git executable on windows"""
+ # first see if git is in the path
+ try:
+ check_output(["where", "/Q", "git"])
+ # if this command succeeded, git is in the path
+ return "git"
+ # catch the exception thrown if git was not found
+ except CalledProcessError:
+ pass
+ # There are several locations git.exe may be hiding
+ possible_locations = []
+ # look in program files for msysgit
+ if "PROGRAMFILES(X86)" in environ:
+ possible_locations.append("%s/Git/cmd/git.exe" %
+ environ["PROGRAMFILES(X86)"])
+ if "PROGRAMFILES" in environ:
+ possible_locations.append("%s/Git/cmd/git.exe" %
+ environ["PROGRAMFILES"])
+ # look for the github version of git
+ if "LOCALAPPDATA" in environ:
+ github_dir = "%s/GitHub" % environ["LOCALAPPDATA"]
+ if path.isdir(github_dir):
+ for subdir in listdir(github_dir):
+ if not subdir.startswith("PortableGit"):
+ continue
+ possible_locations.append("%s/%s/bin/git.exe" %
+ (github_dir, subdir))
+ for possible_location in possible_locations:
+ if path.isfile(possible_location):
+ return possible_location
+ # git was not found
+ return "git"
+
+ GIT_COMMAND = find_git_on_windows()
+
+
+def call_git_describe(abbrev=7):
+ """return the string output of git desribe"""
+ try:
+ with open(devnull, "w") as fnull:
+ arguments = [GIT_COMMAND, "describe", "--tags",
+ "--abbrev=%d" % abbrev]
+ return check_output(arguments, cwd=CURRENT_DIRECTORY,
+ stderr=fnull).decode("ascii").strip()
+ except (OSError, CalledProcessError):
+ return None
+
+
+def format_git_describe(git_str, pep440=False):
+ """format the result of calling 'git describe' as a python version"""
+ if git_str is None:
+ return None
+ if "-" not in git_str: # currently at a tag
+ return git_str
+ else:
+ # formatted as version-N-githash
+ # want to convert to version.postN-githash
+ git_str = git_str.replace("-", ".post", 1)
+ if pep440: # does not allow git hash afterwards
+ return git_str.split("-")[0]
+ else:
+ return git_str.replace("-g", "+git")
+
+
+def read_release_version():
+ """Read version information from VERSION file"""
+ try:
+ with open(VERSION_FILE, "r") as infile:
+ version = str(infile.read().strip())
+ if len(version) == 0:
+ version = None
+ return version
+ except IOError:
+ return None
+
+
+def update_release_version():
+ """Update VERSION file"""
+ version = get_version(pep440=True)
+ with open(VERSION_FILE, "w") as outfile:
+ outfile.write(version)
+ outfile.write("\n")
+
+
+def get_version(pep440=False):
+ """Tracks the version number.
+
+ pep440: bool
+ When True, this function returns a version string suitable for
+ a release as defined by PEP 440. When False, the githash (if
+ available) will be appended to the version string.
+
+ The file VERSION holds the version information. If this is not a git
+ repository, then it is reasonable to assume that the version is not
+ being incremented and the version returned will be the release version as
+ read from the file.
+
+ However, if the script is located within an active git repository,
+ git-describe is used to get the version information.
+
+ The file VERSION will need to be changed by manually. This should be done
+ before running git tag (set to the same as the version in the tag).
+
+ """
+
+ git_version = format_git_describe(call_git_describe(), pep440=pep440)
+ if git_version is None: # not a git repository
+ return read_release_version()
+ return git_version
+
+
+if __name__ == "__main__":
+ print(get_version())
diff --git a/documentation_builder/Makefile b/documentation_builder/Makefile
new file mode 100644
index 0000000..d2f89e9
--- /dev/null
+++ b/documentation_builder/Makefile
@@ -0,0 +1,153 @@
+# Makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS =
+SPHINXBUILD = sphinx-build
+PAPER =
+BUILDDIR = ../documentation
+
+# Internal variables.
+PAPEROPT_a4 = -D latex_paper_size=a4
+PAPEROPT_letter = -D latex_paper_size=letter
+ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+# the i18n builder cannot share the environment and doctrees with the others
+I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+
+.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
+
+help:
+ @echo "Please use \`make <target>' where <target> is one of"
+ @echo " html to make standalone HTML files"
+ @echo " dirhtml to make HTML files named index.html in directories"
+ @echo " singlehtml to make a single large HTML file"
+ @echo " pickle to make pickle files"
+ @echo " json to make JSON files"
+ @echo " htmlhelp to make HTML files and a HTML help project"
+ @echo " qthelp to make HTML files and a qthelp project"
+ @echo " devhelp to make HTML files and a Devhelp project"
+ @echo " epub to make an epub"
+ @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
+ @echo " latexpdf to make LaTeX files and run them through pdflatex"
+ @echo " text to make text files"
+ @echo " man to make manual pages"
+ @echo " texinfo to make Texinfo files"
+ @echo " info to make Texinfo files and run them through makeinfo"
+ @echo " gettext to make PO message catalogs"
+ @echo " changes to make an overview of all changed/added/deprecated items"
+ @echo " linkcheck to check all external links for integrity"
+ @echo " doctest to run all doctests embedded in the documentation (if enabled)"
+
+clean:
+ -rm -rf $(BUILDDIR)/*
+
+html:
+ $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
+ @echo
+ @echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
+
+dirhtml:
+ $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
+ @echo
+ @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
+
+singlehtml:
+ $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
+ @echo
+ @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
+
+pickle:
+ $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
+ @echo
+ @echo "Build finished; now you can process the pickle files."
+
+json:
+ $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
+ @echo
+ @echo "Build finished; now you can process the JSON files."
+
+htmlhelp:
+ $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
+ @echo
+ @echo "Build finished; now you can run HTML Help Workshop with the" \
+ ".hhp project file in $(BUILDDIR)/htmlhelp."
+
+qthelp:
+ $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
+ @echo
+ @echo "Build finished; now you can run "qcollectiongenerator" with the" \
+ ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
+ @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/cobra.qhcp"
+ @echo "To view the help file:"
+ @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/cobra.qhc"
+
+devhelp:
+ $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
+ @echo
+ @echo "Build finished."
+ @echo "To view the help file:"
+ @echo "# mkdir -p $$HOME/.local/share/devhelp/cobra"
+ @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/cobra"
+ @echo "# devhelp"
+
+epub:
+ $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
+ @echo
+ @echo "Build finished. The epub file is in $(BUILDDIR)/epub."
+
+latex:
+ $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+ @echo
+ @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
+ @echo "Run \`make' in that directory to run these through (pdf)latex" \
+ "(use \`make latexpdf' here to do that automatically)."
+
+latexpdf:
+ $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+ @echo "Running LaTeX files through pdflatex..."
+ $(MAKE) -C $(BUILDDIR)/latex all-pdf
+ @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
+
+text:
+ $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
+ @echo
+ @echo "Build finished. The text files are in $(BUILDDIR)/text."
+
+man:
+ $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
+ @echo
+ @echo "Build finished. The manual pages are in $(BUILDDIR)/man."
+
+texinfo:
+ $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
+ @echo
+ @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
+ @echo "Run \`make' in that directory to run these through makeinfo" \
+ "(use \`make info' here to do that automatically)."
+
+info:
+ $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
+ @echo "Running Texinfo files through makeinfo..."
+ make -C $(BUILDDIR)/texinfo info
+ @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
+
+gettext:
+ $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
+ @echo
+ @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
+
+changes:
+ $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
+ @echo
+ @echo "The overview file is in $(BUILDDIR)/changes."
+
+linkcheck:
+ $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
+ @echo
+ @echo "Link check complete; look for any errors in the above output " \
+ "or in $(BUILDDIR)/linkcheck/output.txt."
+
+doctest:
+ $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
+ @echo "Testing of doctests in the sources finished, look at the " \
+ "results in $(BUILDDIR)/doctest/output.txt."
diff --git a/documentation_builder/autodoc.bat b/documentation_builder/autodoc.bat
new file mode 100644
index 0000000..3c533f7
--- /dev/null
+++ b/documentation_builder/autodoc.bat
@@ -0,0 +1,4 @@
+del cobra.*.rst
+sphinx-apidoc -o . ..\cobra
+del *.oven*rst
+del modules.rst
diff --git a/documentation_builder/autodoc.sh b/documentation_builder/autodoc.sh
new file mode 100755
index 0000000..959bf60
--- /dev/null
+++ b/documentation_builder/autodoc.sh
@@ -0,0 +1,10 @@
+rm cobra.rst cobra.*.rst
+sphinx-apidoc -o . ../cobra ../cobra/oven ../cobra/external \
+ ../cobra/test ../cobra/solvers/*_java.py ../cobra/test_all.py \
+ ../cobra/version.py ../cobra/solvers/legacy.py
+rm modules.rst
+
+ipython nbconvert --to=rst *.ipynb
+
+ipython nbconvert --to=python --template=pyscript.tpl *.ipynb
+ls -1 *py | grep -v ^conf.py$ | xargs -Ipy mv py ../examples
diff --git a/documentation_builder/building_model.ipynb b/documentation_builder/building_model.ipynb
new file mode 100644
index 0000000..176a808
--- /dev/null
+++ b/documentation_builder/building_model.ipynb
@@ -0,0 +1,267 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:e4c839935bc077fef105bd09af17e9df5996674528ffafbc16a6a0554c0ea820"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Building a Model"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This simple example (available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/building_model.ipynb)) demonstrates how to create a model, create a reaction, and then add the reaction to the model.\n",
+ "\n",
+ "We'll use the '3OAS140' reaction from the STM_1.0 model:\n",
+ "\n",
+ "1.0 malACP[c] + 1.0 h[c] + 1.0 ddcaACP[c] $\\rightarrow$ 1.0 co2[c] + 1.0 ACP[c] + 1.0 3omrsACP[c]"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "First, create the model and reaction."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from cobra import Model, Reaction, Metabolite\n",
+ "# Best practise: SBML compliant IDs\n",
+ "cobra_model = Model('example_cobra_model')\n",
+ "\n",
+ "reaction = Reaction('3OAS140')\n",
+ "reaction.name = '3 oxoacyl acyl carrier protein synthase n C140 '\n",
+ "reaction.subsystem = 'Cell Envelope Biosynthesis'\n",
+ "reaction.lower_bound = 0. # This is the default\n",
+ "reaction.upper_bound = 1000. # This is the default\n",
+ "reaction.objective_coefficient = 0. # this is the default\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We need to create metabolites as well. If we were using an existing model, we could use get_by_id to get the apporpriate Metabolite objects instead."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "ACP_c = Metabolite('ACP_c', formula='C11H21N2O7PRS',\n",
+ " name='acyl-carrier-protein', compartment='c')\n",
+ "omrsACP_c = Metabolite('3omrsACP_c', formula='C25H45N2O9PRS',\n",
+ " name='3-Oxotetradecanoyl-acyl-carrier-protein', compartment='c')\n",
+ "co2_c = Metabolite('co2_c', formula='CO2', name='CO2', compartment='c')\n",
+ "malACP_c = Metabolite('malACP_c', formula='C14H22N2O10PRS',\n",
+ " name='Malonyl-acyl-carrier-protein', compartment='c')\n",
+ "h_c = Metabolite('h_c', formula='H', name='H', compartment='c')\n",
+ "ddcaACP_c = Metabolite('ddcaACP_c', formula='C23H43N2O8PRS',\n",
+ " name='Dodecanoyl-ACP-n-C120ACP', compartment='c')\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Adding metabolites to a reaction requires using a dictionary of the metabolites and their stoichiometric coefficients. A group of metabolites can be added all at once, or they can be added one at a time."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "reaction.add_metabolites({malACP_c: -1.0,\n",
+ " h_c: -1.0,\n",
+ " ddcaACP_c: -1.0,\n",
+ " co2_c: 1.0,\n",
+ " ACP_c: 1.0,\n",
+ " omrsACP_c: 1.0})\n",
+ "\n",
+ "\n",
+ "reaction.reaction # This gives a string representation of the reaction"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 3,
+ "text": [
+ "'malACP_c + h_c + ddcaACP_c --> co2_c + 3omrsACP_c + ACP_c'"
+ ]
+ }
+ ],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The gene_reaction_rule is a boolean representation of the gene requirements for this reaction to be active as described in [Schellenberger et al 2011 Nature Protocols 6(9):1290-307](http://dx.doi.org/doi:10.1038/nprot.2011.308). We will assign the gene reaction rule string, which will automatically create the corresponding gene objects."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "reaction.gene_reaction_rule = '( STM2378 or STM1197 )'\n",
+ "reaction.genes"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "frozenset({<Gene STM2378 at 0x3739b10>, <Gene STM1197 at 0x3739b50>})"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "At this point in time, the model is still empty"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print('%i reactions in initial model' % len(cobra_model.reactions))\n",
+ "print('%i metabolites in initial model' % len(cobra_model.metabolites))\n",
+ "print('%i genes in initial model' % len(cobra_model.genes))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "0 reactions in initial model\n",
+ "0 metabolites in initial model\n",
+ "0 genes in initial model\n"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We will add the reaction to the model, which will also add all associated metabolites and genes"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra_model.add_reaction(reaction)\n",
+ "\n",
+ "# Now there are things in the model\n",
+ "print('%i reaction in model' % len(cobra_model.reactions))\n",
+ "print('%i metabolites in model' % len(cobra_model.metabolites))\n",
+ "print('%i genes in model' % len(cobra_model.genes))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "1 reaction in model\n",
+ "6 metabolites in model\n",
+ "2 genes in model\n"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can iterate through the model objects to observe the contents"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "# Iterate through the the objects in the model\n",
+ "print(\"Reactions\")\n",
+ "print(\"---------\")\n",
+ "for x in cobra_model.reactions:\n",
+ " print(\"%s : %s\" % (repr(x), x.reaction))\n",
+ "print(\"Metabolites\")\n",
+ "print(\"-----------\")\n",
+ "for x in cobra_model.metabolites:\n",
+ " print('%s : %s' % (repr(x), x.formula))\n",
+ "print(\"Genes\")\n",
+ "print(\"-----\")\n",
+ "for x in cobra_model.genes:\n",
+ " reactions_list_str = \", \".join((repr(i) for i in x.reactions))\n",
+ " print(\"%s is associated with reactions: %s\" % (repr(x), reactions_list_str))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "Reactions\n",
+ "---------\n",
+ "<Reaction 3OAS140 at 0x4a18b90> : malACP_c + h_c + ddcaACP_c --> co2_c + 3omrsACP_c + ACP_c\n",
+ "Metabolites\n",
+ "-----------\n",
+ "<Metabolite co2_c at 0x594ba10> : CO2\n",
+ "<Metabolite malACP_c at 0x594ba90> : C14H22N2O10PRS\n",
+ "<Metabolite h_c at 0x594bb10> : H\n",
+ "<Metabolite 3omrsACP_c at 0x594b950> : C25H45N2O9PRS\n",
+ "<Metabolite ACP_c at 0x594b990> : C11H21N2O7PRS\n",
+ "<Metabolite ddcaACP_c at 0x594bb90> : C23H43N2O8PRS\n",
+ "Genes\n",
+ "-----\n",
+ "<Gene STM2378 at 0x3739b10> is associated with reactions: <Reaction 3OAS140 at 0x4a18b90>\n",
+ "<Gene STM1197 at 0x3739b50> is associated with reactions: <Reaction 3OAS140 at 0x4a18b90>\n"
+ ]
+ }
+ ],
+ "prompt_number": 7
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/building_model.rst b/documentation_builder/building_model.rst
new file mode 100644
index 0000000..fa1edb1
--- /dev/null
+++ b/documentation_builder/building_model.rst
@@ -0,0 +1,162 @@
+
+Building a Model
+================
+
+This simple example (available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/building_model.ipynb>`__)
+demonstrates how to create a model, create a reaction, and then add the
+reaction to the model.
+
+We'll use the '3OAS140' reaction from the STM\_1.0 model:
+
+1.0 malACP[c] + 1.0 h[c] + 1.0 ddcaACP[c] :math:`\rightarrow` 1.0 co2[c]
++ 1.0 ACP[c] + 1.0 3omrsACP[c]
+
+First, create the model and reaction.
+
+.. code:: python
+
+ from cobra import Model, Reaction, Metabolite
+ # Best practise: SBML compliant IDs
+ cobra_model = Model('example_cobra_model')
+
+ reaction = Reaction('3OAS140')
+ reaction.name = '3 oxoacyl acyl carrier protein synthase n C140 '
+ reaction.subsystem = 'Cell Envelope Biosynthesis'
+ reaction.lower_bound = 0. # This is the default
+ reaction.upper_bound = 1000. # This is the default
+ reaction.objective_coefficient = 0. # this is the default
+
+We need to create metabolites as well. If we were using an existing
+model, we could use get\_by\_id to get the apporpriate Metabolite
+objects instead.
+
+.. code:: python
+
+ ACP_c = Metabolite('ACP_c', formula='C11H21N2O7PRS',
+ name='acyl-carrier-protein', compartment='c')
+ omrsACP_c = Metabolite('3omrsACP_c', formula='C25H45N2O9PRS',
+ name='3-Oxotetradecanoyl-acyl-carrier-protein', compartment='c')
+ co2_c = Metabolite('co2_c', formula='CO2', name='CO2', compartment='c')
+ malACP_c = Metabolite('malACP_c', formula='C14H22N2O10PRS',
+ name='Malonyl-acyl-carrier-protein', compartment='c')
+ h_c = Metabolite('h_c', formula='H', name='H', compartment='c')
+ ddcaACP_c = Metabolite('ddcaACP_c', formula='C23H43N2O8PRS',
+ name='Dodecanoyl-ACP-n-C120ACP', compartment='c')
+
+Adding metabolites to a reaction requires using a dictionary of the
+metabolites and their stoichiometric coefficients. A group of
+metabolites can be added all at once, or they can be added one at a
+time.
+
+.. code:: python
+
+ reaction.add_metabolites({malACP_c: -1.0,
+ h_c: -1.0,
+ ddcaACP_c: -1.0,
+ co2_c: 1.0,
+ ACP_c: 1.0,
+ omrsACP_c: 1.0})
+
+
+ reaction.reaction # This gives a string representation of the reaction
+
+
+
+.. parsed-literal::
+
+ 'malACP_c + h_c + ddcaACP_c --> co2_c + 3omrsACP_c + ACP_c'
+
+
+
+The gene\_reaction\_rule is a boolean representation of the gene
+requirements for this reaction to be active as described in
+`Schellenberger et al 2011 Nature Protocols
+6(9):1290-307 <http://dx.doi.org/doi:10.1038/nprot.2011.308>`__. We will
+assign the gene reaction rule string, which will automatically create
+the corresponding gene objects.
+
+.. code:: python
+
+ reaction.gene_reaction_rule = '( STM2378 or STM1197 )'
+ reaction.genes
+
+
+
+.. parsed-literal::
+
+ frozenset({<Gene STM2378 at 0x3739b10>, <Gene STM1197 at 0x3739b50>})
+
+
+
+At this point in time, the model is still empty
+
+.. code:: python
+
+ print('%i reactions in initial model' % len(cobra_model.reactions))
+ print('%i metabolites in initial model' % len(cobra_model.metabolites))
+ print('%i genes in initial model' % len(cobra_model.genes))
+
+.. parsed-literal::
+
+ 0 reactions in initial model
+ 0 metabolites in initial model
+ 0 genes in initial model
+
+
+We will add the reaction to the model, which will also add all
+associated metabolites and genes
+
+.. code:: python
+
+ cobra_model.add_reaction(reaction)
+
+ # Now there are things in the model
+ print('%i reaction in model' % len(cobra_model.reactions))
+ print('%i metabolites in model' % len(cobra_model.metabolites))
+ print('%i genes in model' % len(cobra_model.genes))
+
+.. parsed-literal::
+
+ 1 reaction in model
+ 6 metabolites in model
+ 2 genes in model
+
+
+We can iterate through the model objects to observe the contents
+
+.. code:: python
+
+ # Iterate through the the objects in the model
+ print("Reactions")
+ print("---------")
+ for x in cobra_model.reactions:
+ print("%s : %s" % (repr(x), x.reaction))
+ print("Metabolites")
+ print("-----------")
+ for x in cobra_model.metabolites:
+ print('%s : %s' % (repr(x), x.formula))
+ print("Genes")
+ print("-----")
+ for x in cobra_model.genes:
+ reactions_list_str = ", ".join((repr(i) for i in x.reactions))
+ print("%s is associated with reactions: %s" % (repr(x), reactions_list_str))
+
+.. parsed-literal::
+
+ Reactions
+ ---------
+ <Reaction 3OAS140 at 0x4a18b90> : malACP_c + h_c + ddcaACP_c --> co2_c + 3omrsACP_c + ACP_c
+ Metabolites
+ -----------
+ <Metabolite co2_c at 0x594ba10> : CO2
+ <Metabolite malACP_c at 0x594ba90> : C14H22N2O10PRS
+ <Metabolite h_c at 0x594bb10> : H
+ <Metabolite 3omrsACP_c at 0x594b950> : C25H45N2O9PRS
+ <Metabolite ACP_c at 0x594b990> : C11H21N2O7PRS
+ <Metabolite ddcaACP_c at 0x594bb90> : C23H43N2O8PRS
+ Genes
+ -----
+ <Gene STM2378 at 0x3739b10> is associated with reactions: <Reaction 3OAS140 at 0x4a18b90>
+ <Gene STM1197 at 0x3739b50> is associated with reactions: <Reaction 3OAS140 at 0x4a18b90>
+
diff --git a/documentation_builder/cobra.core.rst b/documentation_builder/cobra.core.rst
new file mode 100644
index 0000000..75b4afd
--- /dev/null
+++ b/documentation_builder/cobra.core.rst
@@ -0,0 +1,94 @@
+cobra.core package
+==================
+
+Submodules
+----------
+
+cobra.core.ArrayBasedModel module
+---------------------------------
+
+.. automodule:: cobra.core.ArrayBasedModel
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.DictList module
+--------------------------
+
+.. automodule:: cobra.core.DictList
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Formula module
+-------------------------
+
+.. automodule:: cobra.core.Formula
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Gene module
+----------------------
+
+.. automodule:: cobra.core.Gene
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Metabolite module
+----------------------------
+
+.. automodule:: cobra.core.Metabolite
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Model module
+-----------------------
+
+.. automodule:: cobra.core.Model
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Object module
+------------------------
+
+.. automodule:: cobra.core.Object
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Reaction module
+--------------------------
+
+.. automodule:: cobra.core.Reaction
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Solution module
+--------------------------
+
+.. automodule:: cobra.core.Solution
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.core.Species module
+-------------------------
+
+.. automodule:: cobra.core.Species
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: cobra.core
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/cobra.flux_analysis.rst b/documentation_builder/cobra.flux_analysis.rst
new file mode 100644
index 0000000..b424df7
--- /dev/null
+++ b/documentation_builder/cobra.flux_analysis.rst
@@ -0,0 +1,102 @@
+cobra.flux_analysis package
+===========================
+
+Submodules
+----------
+
+cobra.flux_analysis.deletion_worker module
+------------------------------------------
+
+.. automodule:: cobra.flux_analysis.deletion_worker
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.double_deletion module
+------------------------------------------
+
+.. automodule:: cobra.flux_analysis.double_deletion
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.essentiality module
+---------------------------------------
+
+.. automodule:: cobra.flux_analysis.essentiality
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.loopless module
+-----------------------------------
+
+.. automodule:: cobra.flux_analysis.loopless
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.moma module
+-------------------------------
+
+.. automodule:: cobra.flux_analysis.moma
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.objective module
+------------------------------------
+
+.. automodule:: cobra.flux_analysis.objective
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.parsimonious module
+---------------------------------------
+
+.. automodule:: cobra.flux_analysis.parsimonious
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.phenotype_phase_plane module
+------------------------------------------------
+
+.. automodule:: cobra.flux_analysis.phenotype_phase_plane
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.reaction module
+-----------------------------------
+
+.. automodule:: cobra.flux_analysis.reaction
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.single_deletion module
+------------------------------------------
+
+.. automodule:: cobra.flux_analysis.single_deletion
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.flux_analysis.variability module
+--------------------------------------
+
+.. automodule:: cobra.flux_analysis.variability
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: cobra.flux_analysis
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/cobra.io.rst b/documentation_builder/cobra.io.rst
new file mode 100644
index 0000000..e03b13f
--- /dev/null
+++ b/documentation_builder/cobra.io.rst
@@ -0,0 +1,38 @@
+cobra.io package
+================
+
+Submodules
+----------
+
+cobra.io.json module
+--------------------
+
+.. automodule:: cobra.io.json
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.io.mat module
+-------------------
+
+.. automodule:: cobra.io.mat
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.io.sbml module
+--------------------
+
+.. automodule:: cobra.io.sbml
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: cobra.io
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/cobra.manipulation.rst b/documentation_builder/cobra.manipulation.rst
new file mode 100644
index 0000000..2d2c9cb
--- /dev/null
+++ b/documentation_builder/cobra.manipulation.rst
@@ -0,0 +1,30 @@
+cobra.manipulation package
+==========================
+
+Submodules
+----------
+
+cobra.manipulation.delete module
+--------------------------------
+
+.. automodule:: cobra.manipulation.delete
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.manipulation.modify module
+--------------------------------
+
+.. automodule:: cobra.manipulation.modify
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: cobra.manipulation
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/cobra.mlab.rst b/documentation_builder/cobra.mlab.rst
new file mode 100644
index 0000000..814ee8e
--- /dev/null
+++ b/documentation_builder/cobra.mlab.rst
@@ -0,0 +1,22 @@
+cobra.mlab package
+==================
+
+Submodules
+----------
+
+cobra.mlab.mlab module
+----------------------
+
+.. automodule:: cobra.mlab.mlab
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: cobra.mlab
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/cobra.rst b/documentation_builder/cobra.rst
new file mode 100644
index 0000000..1f55d3b
--- /dev/null
+++ b/documentation_builder/cobra.rst
@@ -0,0 +1,23 @@
+cobra package
+=============
+
+Subpackages
+-----------
+
+.. toctree::
+
+ cobra.core
+ cobra.flux_analysis
+ cobra.io
+ cobra.manipulation
+ cobra.mlab
+ cobra.solvers
+ cobra.topology
+
+Module contents
+---------------
+
+.. automodule:: cobra
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/cobra.solvers.rst b/documentation_builder/cobra.solvers.rst
new file mode 100644
index 0000000..a91750a
--- /dev/null
+++ b/documentation_builder/cobra.solvers.rst
@@ -0,0 +1,54 @@
+cobra.solvers package
+=====================
+
+Submodules
+----------
+
+cobra.solvers.cglpk module
+--------------------------
+
+.. automodule:: cobra.solvers.cglpk
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.solvers.cplex_solver module
+---------------------------------
+
+.. automodule:: cobra.solvers.cplex_solver
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.solvers.glpk_solver module
+--------------------------------
+
+.. automodule:: cobra.solvers.glpk_solver
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.solvers.gurobi_solver module
+----------------------------------
+
+.. automodule:: cobra.solvers.gurobi_solver
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+cobra.solvers.parameters module
+-------------------------------
+
+.. automodule:: cobra.solvers.parameters
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: cobra.solvers
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/cobra.topology.rst b/documentation_builder/cobra.topology.rst
new file mode 100644
index 0000000..9b745ef
--- /dev/null
+++ b/documentation_builder/cobra.topology.rst
@@ -0,0 +1,22 @@
+cobra.topology package
+======================
+
+Submodules
+----------
+
+cobra.topology.reporter_metabolites module
+------------------------------------------
+
+.. automodule:: cobra.topology.reporter_metabolites
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: cobra.topology
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/documentation_builder/conf.py b/documentation_builder/conf.py
new file mode 100644
index 0000000..5e908eb
--- /dev/null
+++ b/documentation_builder/conf.py
@@ -0,0 +1,278 @@
+# -*- coding: utf-8 -*-
+#
+# cobra documentation build configuration file, created by
+# sphinx-quickstart on Wed Jun 13 19:17:34 2012.
+#
+# This file is execfile()d with the current directory set to its containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+import sys
+import os
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#sys.path.insert(0, os.path.abspath('.'))
+sys.path.insert(0, os.path.abspath('..'))
+
+# In order to build documentation that requires libraries to import
+class Mock(object):
+ def __init__(self, *args, **kwargs):
+ return
+
+ def __call__(self, *args, **kwargs):
+ return Mock()
+
+ @classmethod
+ def __getattr__(cls, name):
+ if name in ('__file__', '__path__'):
+ return '/dev/null'
+ else:
+ return Mock()
+
+MOCK_MODULES = ['numpy',
+ 'scipy', 'scipy.sparse', 'scipy.io', 'scipy.stats',
+ 'glpk', 'gurobipy', 'gurobipy.GRB', 'cplex',
+ 'mlabwrap', 'pp', 'libsbml']
+for mod_name in MOCK_MODULES:
+ sys.modules[mod_name] = Mock()
+
+# -- General configuration -----------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = ['sphinx.ext.autodoc', 'sphinx.ext.intersphinx',
+ 'sphinx.ext.mathjax', 'sphinx.ext.viewcode']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix of source filenames.
+source_suffix = '.rst'
+
+# The encoding of source files.
+#source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'cobra'
+copyright = u'2014, Daniel Robert Hyduke and Ali Ebrahim'
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+from cobra.version import get_version, read_release_version
+version = read_release_version()
+# The full version, including alpha/beta/rc tags.
+release = get_version()
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+#today = ''
+# Else, today_fmt is used as the format for a strftime call.
+#today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ['_build', 'version.py']
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+#default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# A list of ignored prefixes for module index sorting.
+#modindex_common_prefix = []
+
+
+# -- Options for HTML output ---------------------------------------------------
+
+mathjax_path = 'https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+html_theme = 'default'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further. For a list of options available for each theme, see the
+# documentation.
+#html_theme_options = {}
+
+# Add any paths that contain custom themes here, relative to this directory.
+#html_theme_path = []
+
+# The name for this set of Sphinx documents. If None, it defaults to
+# "<project> v<release> documentation".
+#html_title = None
+
+# A shorter title for the navigation bar. Default is the same as html_title.
+#html_short_title = None
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+#html_logo = None
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+#html_favicon = None
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+#html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+#html_additional_pages = {}
+
+# If false, no module index is generated.
+#html_domain_indices = True
+
+# If false, no index is generated.
+#html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+#html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+#html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it. The value of this option must be the
+# base URL from which the finished HTML is served.
+#html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+#html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'cobradoc'
+
+
+# -- Options for LaTeX output --------------------------------------------------
+
+latex_elements = {
+# The paper size ('letterpaper' or 'a4paper').
+'papersize': 'letterpaper',
+
+# The font size ('10pt', '11pt' or '12pt').
+#'pointsize': '10pt',
+
+# Additional stuff for the LaTeX preamble.
+'preamble': r'\usepackage{amsmath,amssymb}',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass [howto/manual]).
+latex_documents = [
+ ('index', 'cobra.tex', u'cobra Documentation',
+ u'Daniel Robert Hyduke and Ali Ebrahim', 'manual'),
+]
+
+# The name of an image file (relative to this directory) to place at the top of
+# the title page.
+#latex_logo = None
+
+# For "manual" documents, if this is true, then toplevel headings are parts,
+# not chapters.
+#latex_use_parts = False
+
+# If true, show page references after internal links.
+#latex_show_pagerefs = False
+
+# If true, show URL addresses after external links.
+#latex_show_urls = False
+
+# Documents to append as an appendix to all manuals.
+#latex_appendices = []
+
+# If false, no module index is generated.
+#latex_domain_indices = True
+
+
+# -- Options for manual page output --------------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+ ('index', 'cobra', u'cobra Documentation',
+ [u'Daniel Robert Hyduke and Ali Ebrahim'], 1)
+]
+
+# If true, show URL addresses after external links.
+#man_show_urls = False
+
+
+# -- Options for Texinfo output ------------------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+# dir menu entry, description, category)
+texinfo_documents = [
+ ('index', 'cobra', u'cobra Documentation',
+ u'Daniel Robert Hyduke and Ali Ebrahim', 'cobra',
+ 'A package for constraints-based modeling of biological networks',
+ 'Miscellaneous'),
+]
+
+# Documents to append as an appendix to all manuals.
+#texinfo_appendices = []
+
+# If false, no module index is generated.
+#texinfo_domain_indices = True
+
+# How to display URL addresses: 'footnote', 'no', or 'inline'.
+#texinfo_show_urls = 'footnote'
+
+
+# Example configuration for intersphinx: refer to the Python standard library.
+intersphinx_mapping = {"http://docs.python.org/": None,
+ "http://docs.scipy.org/doc/numpy/": None,
+ "http://docs.scipy.org/doc/scipy/reference": None}
+intersphinx_cache_limit = 10 # days to keep the cached inventories
diff --git a/documentation_builder/deletions.ipynb b/documentation_builder/deletions.ipynb
new file mode 100644
index 0000000..5f01bb1
--- /dev/null
+++ b/documentation_builder/deletions.ipynb
@@ -0,0 +1,401 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:3e35e7bfbc1e247a87ee168c2754042ee867b89916ce0bf24b85e069c1568831"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Simulating Deletions"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/deletions.ipynb)."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from time import time\n",
+ "\n",
+ "\n",
+ "from cobra.test import create_test_model, salmonella_pickle, ecoli_pickle\n",
+ "from cobra.flux_analysis import single_deletion\n",
+ "from cobra.flux_analysis import double_deletion\n",
+ "\n",
+ "\n",
+ "cobra_model = create_test_model(salmonella_pickle)\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Single Deletions"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Perform all single gene deletions on a model"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "start = time() # start timer()\n",
+ "growth_rates, statuses = single_deletion(cobra_model)\n",
+ "print(\"All single gene deletions completed in %.2f sec\" % (time() - start))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "All single gene deletions completed in 4.01 sec\n"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "These can also be done for only a subset of genes"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "single_deletion(cobra_model, element_list=cobra_model.genes[:100]);\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Single deletions can also be run on reactions"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "start = time() # start timer()\n",
+ "growth_rates, statuses = single_deletion(cobra_model, element_type=\"reaction\")\n",
+ "print(\"All single reaction deletions completed in %.2f sec\" % (time() - start))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "All single reaction deletions completed in 7.41 sec\n"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Double Deletions"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Double deletions run in a similar way"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "start = time() # start timer()\n",
+ "double_deletion(cobra_model, element_list_1=cobra_model.genes[:100])\n",
+ "print(\"Double gene deletions for 100 genes completed in %.2f sec\" % (time() - start))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "Double gene deletions for 100 genes completed in 4.94 sec\n"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "By default, the double deletion function will automatically use multiprocessing, splitting the task over up to 4 cores if they are available. The number of cores can be manually sepcified as well. Setting use of a single core will disable use of the multiprocessing library, which often aids debuggging."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "start = time() # start timer()\n",
+ "double_deletion(cobra_model, element_list_1=cobra_model.genes[:100],\n",
+ " number_of_processes=2)\n",
+ "t1 = time() - start\n",
+ "print(\"Double gene deletions for 100 genes completed in %.2f sec with 2 cores\" % t1)\n",
+ "\n",
+ "start = time() # start timer()\n",
+ "double_deletion(cobra_model, element_list_1=cobra_model.genes[:100],\n",
+ " number_of_processes=1)\n",
+ "t2 = time() - start\n",
+ "print(\"Double gene deletions for 100 genes completed in %.2f sec with 1 core\" % t2)\n",
+ "\n",
+ "print(\"Speedup of %.2fx\" % (t2/t1))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "Double gene deletions for 100 genes completed in 4.02 sec with 2 cores\n",
+ "Double gene deletions for 100 genes completed in 6.77 sec with 1 core"
+ ]
+ },
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "\n",
+ "Speedup of 1.69x\n"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Double deletions can also be run for reactions"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "start = time()\n",
+ "double_deletion(cobra_model, element_list_1=cobra_model.reactions[:100],\n",
+ " element_type=\"reaction\")\n",
+ "t = time() - start\n",
+ "print(\"Double reaction deletions for 100 reactions completed in %.2f sec\" % t)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "Double reaction deletions for 100 reactions completed in 0.93 sec\n"
+ ]
+ }
+ ],
+ "prompt_number": 7
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "If pandas is installed, the results can be returned formatted as a pandas.DataFrame"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "frame = double_deletion(cobra_model, element_list_1=cobra_model.reactions[300:308],\n",
+ " element_type=\"reaction\", return_frame=True)\n",
+ "frame[frame < 1e-9] = 0. # round small values to 0\n",
+ "frame"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "html": [
+ "<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
+ "<table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th></th>\n",
+ " <th>ARBtex</th>\n",
+ " <th>ARGAGMt7pp</th>\n",
+ " <th>ARGDC</th>\n",
+ " <th>ARGDCpp</th>\n",
+ " <th>ARGORNt7pp</th>\n",
+ " <th>ARGSL</th>\n",
+ " <th>ARGSS</th>\n",
+ " <th>ARGTRS</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr>\n",
+ " <th>ARBtex</th>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.380008</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>ARGAGMt7pp</th>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.380008</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>ARGDC</th>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.380008</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>ARGDCpp</th>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.380008</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>ARGORNt7pp</th>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.380008</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>ARGSL</th>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.000000</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>ARGSS</th>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0.000000</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.000000</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>ARGTRS</th>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0.380008</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0</td>\n",
+ " <td> 0.380008</td>\n",
+ " </tr>\n",
+ " </tbody>\n",
+ "</table>\n",
+ "</div>"
+ ],
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 8,
+ "text": [
+ " ARBtex ARGAGMt7pp ARGDC ARGDCpp ARGORNt7pp ARGSL \\\n",
+ "ARBtex 0.380008 0.380008 0.380008 0.380008 0.380008 0 \n",
+ "ARGAGMt7pp 0.380008 0.380008 0.380008 0.380008 0.380008 0 \n",
+ "ARGDC 0.380008 0.380008 0.380008 0.380008 0.380008 0 \n",
+ "ARGDCpp 0.380008 0.380008 0.380008 0.380008 0.380008 0 \n",
+ "ARGORNt7pp 0.380008 0.380008 0.380008 0.380008 0.380008 0 \n",
+ "ARGSL 0.000000 0.000000 0.000000 0.000000 0.000000 0 \n",
+ "ARGSS 0.000000 0.000000 0.000000 0.000000 0.000000 0 \n",
+ "ARGTRS 0.380008 0.380008 0.380008 0.380008 0.380008 0 \n",
+ "\n",
+ " ARGSS ARGTRS \n",
+ "ARBtex 0 0.380008 \n",
+ "ARGAGMt7pp 0 0.380008 \n",
+ "ARGDC 0 0.380008 \n",
+ "ARGDCpp 0 0.380008 \n",
+ "ARGORNt7pp 0 0.380008 \n",
+ "ARGSL 0 0.000000 \n",
+ "ARGSS 0 0.000000 \n",
+ "ARGTRS 0 0.380008 "
+ ]
+ }
+ ],
+ "prompt_number": 8
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/deletions.rst b/documentation_builder/deletions.rst
new file mode 100644
index 0000000..ff9fc57
--- /dev/null
+++ b/documentation_builder/deletions.rst
@@ -0,0 +1,237 @@
+
+Simulating Deletions
+====================
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/deletions.ipynb>`__.
+
+.. code:: python
+
+ from time import time
+
+
+ from cobra.test import create_test_model, salmonella_pickle, ecoli_pickle
+ from cobra.flux_analysis import single_deletion
+ from cobra.flux_analysis import double_deletion
+
+
+ cobra_model = create_test_model(salmonella_pickle)
+
+Single Deletions
+----------------
+
+Perform all single gene deletions on a model
+
+.. code:: python
+
+ start = time() # start timer()
+ growth_rates, statuses = single_deletion(cobra_model)
+ print("All single gene deletions completed in %.2f sec" % (time() - start))
+
+.. parsed-literal::
+
+ All single gene deletions completed in 4.01 sec
+
+
+These can also be done for only a subset of genes
+
+.. code:: python
+
+ single_deletion(cobra_model, element_list=cobra_model.genes[:100]);
+
+Single deletions can also be run on reactions
+
+.. code:: python
+
+ start = time() # start timer()
+ growth_rates, statuses = single_deletion(cobra_model, element_type="reaction")
+ print("All single reaction deletions completed in %.2f sec" % (time() - start))
+
+.. parsed-literal::
+
+ All single reaction deletions completed in 7.41 sec
+
+
+Double Deletions
+----------------
+
+Double deletions run in a similar way
+
+.. code:: python
+
+ start = time() # start timer()
+ double_deletion(cobra_model, element_list_1=cobra_model.genes[:100])
+ print("Double gene deletions for 100 genes completed in %.2f sec" % (time() - start))
+
+.. parsed-literal::
+
+ Double gene deletions for 100 genes completed in 4.94 sec
+
+
+By default, the double deletion function will automatically use
+multiprocessing, splitting the task over up to 4 cores if they are
+available. The number of cores can be manually sepcified as well.
+Setting use of a single core will disable use of the multiprocessing
+library, which often aids debuggging.
+
+.. code:: python
+
+ start = time() # start timer()
+ double_deletion(cobra_model, element_list_1=cobra_model.genes[:100],
+ number_of_processes=2)
+ t1 = time() - start
+ print("Double gene deletions for 100 genes completed in %.2f sec with 2 cores" % t1)
+
+ start = time() # start timer()
+ double_deletion(cobra_model, element_list_1=cobra_model.genes[:100],
+ number_of_processes=1)
+ t2 = time() - start
+ print("Double gene deletions for 100 genes completed in %.2f sec with 1 core" % t2)
+
+ print("Speedup of %.2fx" % (t2/t1))
+
+.. parsed-literal::
+
+ Double gene deletions for 100 genes completed in 4.02 sec with 2 cores
+ Double gene deletions for 100 genes completed in 6.77 sec with 1 core
+ Speedup of 1.69x
+
+
+Double deletions can also be run for reactions
+
+.. code:: python
+
+ start = time()
+ double_deletion(cobra_model, element_list_1=cobra_model.reactions[:100],
+ element_type="reaction")
+ t = time() - start
+ print("Double reaction deletions for 100 reactions completed in %.2f sec" % t)
+
+.. parsed-literal::
+
+ Double reaction deletions for 100 reactions completed in 0.93 sec
+
+
+If pandas is installed, the results can be returned formatted as a
+pandas.DataFrame
+
+.. code:: python
+
+ frame = double_deletion(cobra_model, element_list_1=cobra_model.reactions[300:308],
+ element_type="reaction", return_frame=True)
+ frame[frame < 1e-9] = 0. # round small values to 0
+ frame
+
+
+
+.. raw:: html
+
+ <div style="max-height:1000px;max-width:1500px;overflow:auto;">
+ <table border="1" class="dataframe">
+ <thead>
+ <tr style="text-align: right;">
+ <th></th>
+ <th>ARBtex</th>
+ <th>ARGAGMt7pp</th>
+ <th>ARGDC</th>
+ <th>ARGDCpp</th>
+ <th>ARGORNt7pp</th>
+ <th>ARGSL</th>
+ <th>ARGSS</th>
+ <th>ARGTRS</th>
+ </tr>
+ </thead>
+ <tbody>
+ <tr>
+ <th>ARBtex</th>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.380008</td>
+ </tr>
+ <tr>
+ <th>ARGAGMt7pp</th>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.380008</td>
+ </tr>
+ <tr>
+ <th>ARGDC</th>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.380008</td>
+ </tr>
+ <tr>
+ <th>ARGDCpp</th>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.380008</td>
+ </tr>
+ <tr>
+ <th>ARGORNt7pp</th>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.380008</td>
+ </tr>
+ <tr>
+ <th>ARGSL</th>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.000000</td>
+ </tr>
+ <tr>
+ <th>ARGSS</th>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0.000000</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.000000</td>
+ </tr>
+ <tr>
+ <th>ARGTRS</th>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0.380008</td>
+ <td> 0</td>
+ <td> 0</td>
+ <td> 0.380008</td>
+ </tr>
+ </tbody>
+ </table>
+ </div>
+
+
diff --git a/documentation_builder/faq.ipynb b/documentation_builder/faq.ipynb
new file mode 100644
index 0000000..468d075
--- /dev/null
+++ b/documentation_builder/faq.ipynb
@@ -0,0 +1,330 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:cde41ad75140ccb9197f8b812a0c01b585dd7fc2b363fb9c45596f02cafbc482"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "FAQ"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This document will address frequently asked questions not addressed in other pages of the documentation."
+ ]
+ },
+ {
+ "cell_type": "heading",
+ "level": 3,
+ "metadata": {},
+ "source": [
+ "How do I install cobrapy?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Please see the [INSTALL.md](https://github.com/opencobra/cobrapy/blob/master/INSTALL.md) file."
+ ]
+ },
+ {
+ "cell_type": "heading",
+ "level": 3,
+ "metadata": {},
+ "source": [
+ "How do I cite cobrapy?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Please cite the 2013 publication: [10.1186/1752-0509-7-74](http://dx.doi.org/doi:10.1186/1752-0509-7-74)"
+ ]
+ },
+ {
+ "cell_type": "heading",
+ "level": 3,
+ "metadata": {},
+ "source": [
+ "How do I rename reactions or metabolites?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "TL;DR Use Model.repair afterwards\n",
+ "\n",
+ "When renaming metabolites or reactions, there are issues because cobra indexes based off of ID's, which can cause errors. For example:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from __future__ import print_function\n",
+ "import cobra.test\n",
+ "model = cobra.test.create_test_model()\n",
+ "\n",
+ "for metabolite in model.metabolites:\n",
+ " metabolite.id = \"test_\" + metabolite.id\n",
+ "\n",
+ "try:\n",
+ " model.metabolites.get_by_id(model.metabolites[0].id)\n",
+ "except KeyError as e:\n",
+ " print(repr(e))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "KeyError('test_dcaACP_c',)\n"
+ ]
+ }
+ ],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The Model.repair function will rebuild the necessary indexes"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.repair()\n",
+ "model.metabolites.get_by_id(model.metabolites[0].id)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 2,
+ "text": [
+ "<Metabolite test_dcaACP_c at 0x688b450>"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "heading",
+ "level": 3,
+ "metadata": {},
+ "source": [
+ "How do I delete a gene?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "That depends on what precisely you mean by delete a gene.\n",
+ "\n",
+ "If you want to simulate the model with a gene knockout, use the cobra.maniupulation.delete_model_genes function. The effects of this function are reversed by cobra.manipulation.undelete_model_genes."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model = cobra.test.create_test_model()\n",
+ "PGI = model.reactions.get_by_id(\"PGI\")\n",
+ "print(\"bounds before knockout:\", (PGI.lower_bound, PGI.upper_bound))\n",
+ "cobra.manipulation.delete_model_genes(model, [\"STM4221\"])\n",
+ "print(\"bounds after knockouts\", (PGI.lower_bound, PGI.upper_bound))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "bounds before knockout: (-1000.0, 1000.0)\n",
+ "bounds after knockouts (0.0, 0.0)\n"
+ ]
+ }
+ ],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "If you want to actually remove all traces of a gene from a model, this is more difficult because this will require changing all the gene_reaction_rule strings for reactions involving the gene."
+ ]
+ },
+ {
+ "cell_type": "heading",
+ "level": 3,
+ "metadata": {},
+ "source": [
+ "How do I change the reversibility of a Reaction?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Reaction.reversibility is a property in cobra which is computed when it is requested from the lower and upper bounds."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model = cobra.test.create_test_model()\n",
+ "model.reactions.get_by_id(\"PGI\").reversibility"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "True"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Trying to set it directly will result in an error: "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "try:\n",
+ " model.reactions.get_by_id(\"PGI\").reversibility = False\n",
+ "except Exception as e:\n",
+ " print(repr(e))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "AttributeError(\"can't set attribute\",)\n"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The way to change the reversibility is to change the bounds to make the reaction irreversible."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.reactions.get_by_id(\"PGI\").lower_bound = 10\n",
+ "model.reactions.get_by_id(\"PGI\").reversibility"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 6,
+ "text": [
+ "False"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "heading",
+ "level": 3,
+ "metadata": {},
+ "source": [
+ "How do I generate an LP file from a COBRA model?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "While the cobrapy does not include python code to support this feature directly, many of the bundled solvers have this capability. Create the problem with one of these solvers, and use its appropriate function.\n",
+ "\n",
+ "Please note that unlike the LP file format, the MPS file format does not specify objective direction and is always a minimzation. Some (but not all) solvers will rewrite the maximization as a minimzation."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model = cobra.test.create_test_model()\n",
+ "# glpk through cglpk\n",
+ "glp = cobra.solvers.cglpk.create_problem(model)\n",
+ "glp.write(\"test.lp\")\n",
+ "glp.write(\"test.mps\") # will not rewrite objective\n",
+ "# gurobi\n",
+ "gurobi_problem = cobra.solvers.gurobi_solver.create_problem(model)\n",
+ "gurobi_problem.write(\"test.lp\")\n",
+ "gurobi_problem.write(\"test.mps\") # rewrites objective\n",
+ "# cplex\n",
+ "cplex_problem = cobra.solvers.cplex_solver.create_problem(model)\n",
+ "cplex_problem.write(\"test.lp\")\n",
+ "cplex_problem.write(\"test.mps\") # rewrites objective"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 7
+ },
+ {
+ "cell_type": "heading",
+ "level": 3,
+ "metadata": {},
+ "source": [
+ "How do I visualize my flux solutions?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "cobrapy works well with the [escher](https://escher.github.io/) package, which is well suited to this purpose. Consult the [escher documentation](https://escher.readthedocs.org/en/latest/) for examples."
+ ]
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/faq.rst b/documentation_builder/faq.rst
new file mode 100644
index 0000000..1dafe99
--- /dev/null
+++ b/documentation_builder/faq.rst
@@ -0,0 +1,171 @@
+
+FAQ
+===
+
+This document will address frequently asked questions not addressed in
+other pages of the documentation.
+
+How do I install cobrapy?
+~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Please see the
+`INSTALL.md <https://github.com/opencobra/cobrapy/blob/master/INSTALL.md>`__
+file.
+
+How do I cite cobrapy?
+~~~~~~~~~~~~~~~~~~~~~~
+
+Please cite the 2013 publication:
+`10.1186/1752-0509-7-74 <http://dx.doi.org/doi:10.1186/1752-0509-7-74>`__
+
+How do I rename reactions or metabolites?
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+TL;DR Use Model.repair afterwards
+
+When renaming metabolites or reactions, there are issues because cobra
+indexes based off of ID's, which can cause errors. For example:
+
+.. code:: python
+
+ from __future__ import print_function
+ import cobra.test
+ model = cobra.test.create_test_model()
+
+ for metabolite in model.metabolites:
+ metabolite.id = "test_" + metabolite.id
+
+ try:
+ model.metabolites.get_by_id(model.metabolites[0].id)
+ except KeyError as e:
+ print(repr(e))
+
+.. parsed-literal::
+
+ KeyError('test_dcaACP_c',)
+
+
+The Model.repair function will rebuild the necessary indexes
+
+.. code:: python
+
+ model.repair()
+ model.metabolites.get_by_id(model.metabolites[0].id)
+
+
+
+.. parsed-literal::
+
+ <Metabolite test_dcaACP_c at 0x688b450>
+
+
+
+How do I delete a gene?
+~~~~~~~~~~~~~~~~~~~~~~~
+
+That depends on what precisely you mean by delete a gene.
+
+If you want to simulate the model with a gene knockout, use the
+cobra.maniupulation.delete\_model\_genes function. The effects of this
+function are reversed by cobra.manipulation.undelete\_model\_genes.
+
+.. code:: python
+
+ model = cobra.test.create_test_model()
+ PGI = model.reactions.get_by_id("PGI")
+ print("bounds before knockout:", (PGI.lower_bound, PGI.upper_bound))
+ cobra.manipulation.delete_model_genes(model, ["STM4221"])
+ print("bounds after knockouts", (PGI.lower_bound, PGI.upper_bound))
+
+.. parsed-literal::
+
+ bounds before knockout: (-1000.0, 1000.0)
+ bounds after knockouts (0.0, 0.0)
+
+
+If you want to actually remove all traces of a gene from a model, this
+is more difficult because this will require changing all the
+gene\_reaction\_rule strings for reactions involving the gene.
+
+How do I change the reversibility of a Reaction?
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Reaction.reversibility is a property in cobra which is computed when it
+is requested from the lower and upper bounds.
+
+.. code:: python
+
+ model = cobra.test.create_test_model()
+ model.reactions.get_by_id("PGI").reversibility
+
+
+
+.. parsed-literal::
+
+ True
+
+
+
+Trying to set it directly will result in an error:
+
+.. code:: python
+
+ try:
+ model.reactions.get_by_id("PGI").reversibility = False
+ except Exception as e:
+ print(repr(e))
+
+.. parsed-literal::
+
+ AttributeError("can't set attribute",)
+
+
+The way to change the reversibility is to change the bounds to make the
+reaction irreversible.
+
+.. code:: python
+
+ model.reactions.get_by_id("PGI").lower_bound = 10
+ model.reactions.get_by_id("PGI").reversibility
+
+
+
+.. parsed-literal::
+
+ False
+
+
+
+How do I generate an LP file from a COBRA model?
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+While the cobrapy does not include python code to support this feature
+directly, many of the bundled solvers have this capability. Create the
+problem with one of these solvers, and use its appropriate function.
+
+Please note that unlike the LP file format, the MPS file format does not
+specify objective direction and is always a minimzation. Some (but not
+all) solvers will rewrite the maximization as a minimzation.
+
+.. code:: python
+
+ model = cobra.test.create_test_model()
+ # glpk through cglpk
+ glp = cobra.solvers.cglpk.create_problem(model)
+ glp.write("test.lp")
+ glp.write("test.mps") # will not rewrite objective
+ # gurobi
+ gurobi_problem = cobra.solvers.gurobi_solver.create_problem(model)
+ gurobi_problem.write("test.lp")
+ gurobi_problem.write("test.mps") # rewrites objective
+ # cplex
+ cplex_problem = cobra.solvers.cplex_solver.create_problem(model)
+ cplex_problem.write("test.lp")
+ cplex_problem.write("test.mps") # rewrites objective
+How do I visualize my flux solutions?
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+cobrapy works well with the `escher <https://escher.github.io/>`__
+package, which is well suited to this purpose. Consult the `escher
+documentation <https://escher.readthedocs.org/en/latest/>`__ for
+examples.
diff --git a/documentation_builder/getting_started.ipynb b/documentation_builder/getting_started.ipynb
new file mode 100644
index 0000000..748a1e8
--- /dev/null
+++ b/documentation_builder/getting_started.ipynb
@@ -0,0 +1,857 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:8ba1405f8cf805ab6aa98f3a22f31f1d598c18b1ec773c0ff9f569c253402679"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Getting Started"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/getting_started.ipynb)."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "To begin with, cobrapy comes with two bundled models for _Salmonella_ and _E. coli_. To load a test model, type"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from __future__ import print_function\n",
+ "import cobra.test\n",
+ "model = cobra.test.create_test_model(\"salmonella\")\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The reactions, metabolites, and genes attributes of the cobrapy model are are a special type of list called a DictList, and each one is made up of Reaction, Metabolite and Gene objects respectively."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print(len(model.reactions))\n",
+ "print(len(model.metabolites))\n",
+ "print(len(model.genes))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "2546\n",
+ "1802\n",
+ "1264\n"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Just like a regular list, objects in the DictList can be retrived by index. For example, to get the 30th reaction in the model (at index 29 because of [0-indexing](https://en.wikipedia.org/wiki/Z ero-based_numbering)):"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.reactions[29]"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 3,
+ "text": [
+ "<Reaction 2AGPA180tipp at 0x7f6d94afc210>"
+ ]
+ }
+ ],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Addictionally, items can be retrived by their id using the get_by_id() function. For example, to get the cytosolic atp metabolite object (the id is \"atp_c\"), we can do the following:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.metabolites.get_by_id(\"atp_c\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "<Metabolite atp_c at 0x7f6d94b4c610>"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "As an added bonus, users with an interactive shell such as IPython will be able to tab-complete to list elements inside a list. While this is not recommended behavior for most code because of the possibility for characters like \"-\" inside ids, this is very useful while in an interactive prompt:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.reactions.EX_glc__D_e.lower_bound"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 5,
+ "text": [
+ "0.0"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Reactions"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We will consider the reaction glucose 6-phosphate isomerase, which interconverts glucose 6-phosphate and fructose 6-phosphate. The reaction id for this reaction in our test model is PGI."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi = model.reactions.get_by_id(\"PGI\")\n",
+ "pgi"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 6,
+ "text": [
+ "<Reaction PGI at 0x7f6d93e62110>"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can view the full name and reaction catalyzed as strings"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print(pgi.name)\n",
+ "print(pgi.reaction)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "glucose 6 phosphate isomerase\n",
+ "g6p_c <=> f6p_c\n"
+ ]
+ }
+ ],
+ "prompt_number": 7
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can also view reaction upper and lower bounds. Because the pgi.lower_bound < 0, and pgi.upper_bound > 0, pgi is reversible"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print(pgi.lower_bound, \"< pgi <\", pgi.upper_bound)\n",
+ "print(pgi.reversibility)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "-1000.0 < pgi < 1000.0\n",
+ "True\n"
+ ]
+ }
+ ],
+ "prompt_number": 8
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can also ensure the reaction is mass balanced. This function will return elements which violate mass balance. If it comes back empty, then the reaction is mass balanced."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.check_mass_balance()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 9,
+ "text": [
+ "[]"
+ ]
+ }
+ ],
+ "prompt_number": 9
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "In order to add a metabolite, we pass in a dict with the metabolite object and its coefficient"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.add_metabolites({model.metabolites.get_by_id(\"h_c\"): -1})\n",
+ "pgi.reaction"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 10,
+ "text": [
+ "'g6p_c + h_c <=> f6p_c'"
+ ]
+ }
+ ],
+ "prompt_number": 10
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The reaction is no longer mass balanced"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.check_mass_balance()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 11,
+ "text": [
+ "['PGI', {'C': 0.0, 'H': -1.0, 'O': 0.0, 'P': 0.0}]"
+ ]
+ }
+ ],
+ "prompt_number": 11
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can remove the metabolite, and the reaction will be balanced once again."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.pop(model.metabolites.get_by_id(\"h_c\"))\n",
+ "print(pgi.reaction)\n",
+ "print(pgi.check_mass_balance())"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "g6p_c <=> f6p_c\n",
+ "[]\n"
+ ]
+ }
+ ],
+ "prompt_number": 12
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "It is also possible to build the reaction from a string. However, care must be taken when doing this to ensure reaction id's match those in the model. The direction of the arrow is also used to update the upper and lower bounds."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.reaction = \"g6p_c --> f6p_c + h_c + green_eggs + ham\""
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "unknown metabolite 'green_eggs' created\n",
+ "unknown metabolite 'ham' created\n"
+ ]
+ }
+ ],
+ "prompt_number": 13
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.reaction"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 14,
+ "text": [
+ "'g6p_c --> ham + green_eggs + f6p_c + h_c'"
+ ]
+ }
+ ],
+ "prompt_number": 14
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.reaction = \"g6p_c <=> f6p_c\"\n",
+ "pgi.reaction"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 15,
+ "text": [
+ "'g6p_c <=> f6p_c'"
+ ]
+ }
+ ],
+ "prompt_number": 15
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Metabolites"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We will consider cytosolic atp as our metabolite, which has the id atp_c in our test model."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "atp = model.metabolites.get_by_id(\"atp_c\")\n",
+ "atp"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 16,
+ "text": [
+ "<Metabolite atp_c at 0x7f6d94b4c610>"
+ ]
+ }
+ ],
+ "prompt_number": 16
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can print out the metabolite name and compartment (cytosol in this case)."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print(atp.name)\n",
+ "print(atp.compartment)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "ATP\n",
+ "c\n"
+ ]
+ }
+ ],
+ "prompt_number": 17
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can see that ATP is a charged molecule in our model."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "atp.charge"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 18,
+ "text": [
+ "-4"
+ ]
+ }
+ ],
+ "prompt_number": 18
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can see the chemical formula for the metabolite as well."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print(atp.formula)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "C10H12N5O13P3\n"
+ ]
+ }
+ ],
+ "prompt_number": 19
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The reactions attribute gives a frozenset of all reactions using the given metabolite. We can use this to count the number of reactions which use atp."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "len(atp.reactions)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 20,
+ "text": [
+ "348"
+ ]
+ }
+ ],
+ "prompt_number": 20
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "A metabolite like glucose 6-phosphate will participate in fewer reactions."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.metabolites.get_by_id(\"g6p_c\").reactions"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 21,
+ "text": [
+ "frozenset({<Reaction AB6PGH at 0x7f6d93b3d990>,\n",
+ " <Reaction TRE6PH at 0x7f6d93d32050>,\n",
+ " <Reaction TRE6PS at 0x7f6d93d32310>,\n",
+ " <Reaction PGI at 0x7f6d93e62110>,\n",
+ " <Reaction PGMT at 0x7f6d93e62690>,\n",
+ " <Reaction HEX1 at 0x7f6d940be9d0>,\n",
+ " <Reaction GLCptspp at 0x7f6d9412a650>,\n",
+ " <Reaction G6PDH2r at 0x7f6d94155790>,\n",
+ " <Reaction G6PP at 0x7f6d94155990>,\n",
+ " <Reaction G6Pt6_2pp at 0x7f6d94155a50>})"
+ ]
+ }
+ ],
+ "prompt_number": 21
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Genes"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The gene_reaction_rule is a boolean representation of the gene requirements for this reaction to be active as described in [Schellenberger et al 2011 Nature Protocols 6(9):1290-307](http://dx.doi.org/doi:10.1038/nprot.2011.308).\n",
+ "\n",
+ "The GPR is stored as the gene_reaction_rule for a Reaction object as a string."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "gpr = pgi.gene_reaction_rule\n",
+ "gpr"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 22,
+ "text": [
+ "'STM4221'"
+ ]
+ }
+ ],
+ "prompt_number": 22
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Corresponding gene objects also exist. These objects are tracked by the reactions itself, as well as by the model"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.genes"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 23,
+ "text": [
+ "frozenset({<Gene STM4221 at 0x7f6d93e62190>})"
+ ]
+ }
+ ],
+ "prompt_number": 23
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi_gene = model.genes.get_by_id(\"STM4221\")\n",
+ "pgi_gene"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 24,
+ "text": [
+ "<Gene STM4221 at 0x7f6d93e62190>"
+ ]
+ }
+ ],
+ "prompt_number": 24
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Each gene keeps track of the reactions it catalyzes"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi_gene.reactions"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 25,
+ "text": [
+ "frozenset({<Reaction PGI at 0x7f6d93e62110>})"
+ ]
+ }
+ ],
+ "prompt_number": 25
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Altering the gene_reaction_rule will create new gene objects if necessary and update all relationships."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi.gene_reaction_rule = \"(spam or eggs)\"\n",
+ "pgi.genes"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 26,
+ "text": [
+ "frozenset({<Gene eggs at 0x7f6d93ad5ad0>, <Gene spam at 0x7f6d93ad5b10>})"
+ ]
+ }
+ ],
+ "prompt_number": 26
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "pgi_gene.reactions"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 27,
+ "text": [
+ "frozenset()"
+ ]
+ }
+ ],
+ "prompt_number": 27
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Newly created genes are also added to the model"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.genes.get_by_id(\"spam\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 28,
+ "text": [
+ "<Gene spam at 0x7f6d93ad5b10>"
+ ]
+ }
+ ],
+ "prompt_number": 28
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The delete_model_genes function will evaluate the gpr and set the upper and lower bounds to 0 if the reaction is knocked out. This function can preserve existing deletions or reset them using the cumulative_deletions flag."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.manipulation.delete_model_genes(model, [\"spam\"], cumulative_deletions=True)\n",
+ "print(pgi.lower_bound, \"< pgi <\", pgi.upper_bound)\n",
+ "cobra.manipulation.delete_model_genes(model, [\"eggs\"], cumulative_deletions=True)\n",
+ "print(pgi.lower_bound, \"< pgi <\", pgi.upper_bound)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "-1000 < pgi < 1000\n",
+ "0.0 < pgi < 0.0\n"
+ ]
+ }
+ ],
+ "prompt_number": 29
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The undelete_model_genes can be used to reset a gene deletion"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.manipulation.undelete_model_genes(model)\n",
+ "print(pgi.lower_bound, \"< pgi <\", pgi.upper_bound)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "-1000 < pgi < 1000\n"
+ ]
+ }
+ ],
+ "prompt_number": 30
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/getting_started.rst b/documentation_builder/getting_started.rst
new file mode 100644
index 0000000..216afb2
--- /dev/null
+++ b/documentation_builder/getting_started.rst
@@ -0,0 +1,454 @@
+
+Getting Started
+===============
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/getting_started.ipynb>`__.
+
+To begin with, cobrapy comes with two bundled models for *Salmonella*
+and *E. coli*. To load a test model, type
+
+.. code:: python
+
+ from __future__ import print_function
+ import cobra.test
+ model = cobra.test.create_test_model("salmonella")
+
+The reactions, metabolites, and genes attributes of the cobrapy model
+are are a special type of list called a DictList, and each one is made
+up of Reaction, Metabolite and Gene objects respectively.
+
+.. code:: python
+
+ print(len(model.reactions))
+ print(len(model.metabolites))
+ print(len(model.genes))
+
+.. parsed-literal::
+
+ 2546
+ 1802
+ 1264
+
+
+Just like a regular list, objects in the DictList can be retrived by
+index. For example, to get the 30th reaction in the model (at index 29
+because of
+`0-indexing <https://en.wikipedia.org/wiki/Z%20ero-based_numbering>`__):
+
+.. code:: python
+
+ model.reactions[29]
+
+
+
+.. parsed-literal::
+
+ <Reaction 2AGPA180tipp at 0x7f227ada62d0>
+
+
+
+Addictionally, items can be retrived by their id using the get\_by\_id()
+function. For example, to get the cytosolic atp metabolite object (the
+id is "atp\_c"), we can do the following:
+
+.. code:: python
+
+ model.metabolites.get_by_id("atp_c")
+
+
+
+.. parsed-literal::
+
+ <Metabolite atp_c at 0x7f227adf56d0>
+
+
+
+As an added bonus, users with an interactive shell such as IPython will
+be able to tab-complete to list elements inside a list. While this is
+not recommended behavior for most code because of the possibility for
+characters like "-" inside ids, this is very useful while in an
+interactive prompt:
+
+.. code:: python
+
+ model.reactions.EX_glc__D_e.lower_bound
+
+
+
+.. parsed-literal::
+
+ 0.0
+
+
+
+Reactions
+---------
+
+We will consider the reaction glucose 6-phosphate isomerase, which
+interconverts glucose 6-phosphate and fructose 6-phosphate. The reaction
+id for this reaction in our test model is PGI.
+
+.. code:: python
+
+ pgi = model.reactions.get_by_id("PGI")
+ pgi
+
+
+
+.. parsed-literal::
+
+ <Reaction PGI at 0x7f227a10b1d0>
+
+
+
+We can view the full name and reaction catalyzed as strings
+
+.. code:: python
+
+ print(pgi.name)
+ print(pgi.reaction)
+
+.. parsed-literal::
+
+ glucose 6 phosphate isomerase
+ g6p_c <=> f6p_c
+
+
+We can also view reaction upper and lower bounds. Because the
+pgi.lower\_bound < 0, and pgi.upper\_bound > 0, pgi is reversible
+
+.. code:: python
+
+ print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+ print(pgi.reversibility)
+
+.. parsed-literal::
+
+ -1000.0 < pgi < 1000.0
+ True
+
+
+We can also ensure the reaction is mass balanced. This function will
+return elements which violate mass balance. If it comes back empty, then
+the reaction is mass balanced.
+
+.. code:: python
+
+ pgi.check_mass_balance()
+
+
+
+.. parsed-literal::
+
+ []
+
+
+
+In order to add a metabolite, we pass in a dict with the metabolite
+object and its coefficient
+
+.. code:: python
+
+ pgi.add_metabolites({model.metabolites.get_by_id("h_c"): -1})
+ pgi.reaction
+
+
+
+.. parsed-literal::
+
+ 'g6p_c + h_c <=> f6p_c'
+
+
+
+The reaction is no longer mass balanced
+
+.. code:: python
+
+ pgi.check_mass_balance()
+
+
+
+.. parsed-literal::
+
+ ['PGI', {'C': 0.0, 'H': -1.0, 'O': 0.0, 'P': 0.0}]
+
+
+
+We can remove the metabolite, and the reaction will be balanced once
+again.
+
+.. code:: python
+
+ pgi.pop(model.metabolites.get_by_id("h_c"))
+ print(pgi.reaction)
+ print(pgi.check_mass_balance())
+
+.. parsed-literal::
+
+ g6p_c <=> f6p_c
+ []
+
+
+It is also possible to build the reaction from a string. However, care
+must be taken when doing this to ensure reaction id's match those in the
+model. The direction of the arrow is also used to update the upper and
+lower bounds.
+
+.. code:: python
+
+ pgi.reaction = "g6p_c --> f6p_c + h_c + green_eggs + ham"
+
+.. parsed-literal::
+
+ unknown metabolite 'green_eggs' created
+ unknown metabolite 'ham' created
+
+
+.. code:: python
+
+ pgi.reaction
+
+
+
+.. parsed-literal::
+
+ 'g6p_c --> f6p_c + green_eggs + ham + h_c'
+
+
+
+Metabolites
+-----------
+
+We will consider cytosolic atp as our metabolite, which has the id
+atp\_c in our test model.
+
+.. code:: python
+
+ atp = model.metabolites.get_by_id("atp_c")
+ atp
+
+
+
+.. parsed-literal::
+
+ <Metabolite atp_c at 0x7f227adf56d0>
+
+
+
+We can print out the metabolite name and compartment (cytosol in this
+case).
+
+.. code:: python
+
+ print(atp.name)
+ print(atp.compartment)
+
+.. parsed-literal::
+
+ ATP
+ c
+
+
+We can see that ATP is a charged molecule in our model.
+
+.. code:: python
+
+ atp.charge
+
+
+
+.. parsed-literal::
+
+ -4
+
+
+
+We can see the chemical formula for the metabolite as well.
+
+.. code:: python
+
+ print(atp.formula)
+
+.. parsed-literal::
+
+ C10H12N5O13P3
+
+
+The reactions attribute gives a frozenset of all reactions using the
+given metabolite. We can use this to count the number of reactions which
+use atp.
+
+.. code:: python
+
+ len(atp.reactions)
+
+
+
+.. parsed-literal::
+
+ 348
+
+
+
+A metabolite like glucose 6-phosphate will participate in fewer
+reactions.
+
+.. code:: python
+
+ model.metabolites.get_by_id("g6p_c").reactions
+
+
+
+.. parsed-literal::
+
+ frozenset({<Reaction AB6PGH at 0x7f2279de6a50>,
+ <Reaction TRE6PH at 0x7f2279fdb110>,
+ <Reaction TRE6PS at 0x7f2279fdb3d0>,
+ <Reaction PGI at 0x7f227a10b1d0>,
+ <Reaction PGMT at 0x7f227a10b750>,
+ <Reaction HEX1 at 0x7f227a368a90>,
+ <Reaction GLCptspp at 0x7f227a3d2710>,
+ <Reaction G6PDH2r at 0x7f227a3fd850>,
+ <Reaction G6PP at 0x7f227a3fda50>,
+ <Reaction G6Pt6_2pp at 0x7f227a3fdb10>})
+
+
+
+Genes
+-----
+
+The gene\_reaction\_rule is a boolean representation of the gene
+requirements for this reaction to be active as described in
+`Schellenberger et al 2011 Nature Protocols
+6(9):1290-307 <http://dx.doi.org/doi:10.1038/nprot.2011.308>`__.
+
+The GPR is stored as the gene\_reaction\_rule for a Reaction object as a
+string.
+
+.. code:: python
+
+ gpr = pgi.gene_reaction_rule
+ gpr
+
+
+
+.. parsed-literal::
+
+ 'STM4221'
+
+
+
+Corresponding gene objects also exist. These objects are tracked by the
+reactions itself, as well as by the model
+
+.. code:: python
+
+ pgi.genes
+
+
+
+.. parsed-literal::
+
+ frozenset({<Gene STM4221 at 0x7f227a10b250>})
+
+
+
+.. code:: python
+
+ pgi_gene = model.genes.get_by_id("STM4221")
+ pgi_gene
+
+
+
+.. parsed-literal::
+
+ <Gene STM4221 at 0x7f227a10b250>
+
+
+
+Each gene keeps track of the reactions it catalyzes
+
+.. code:: python
+
+ pgi_gene.reactions
+
+
+
+.. parsed-literal::
+
+ frozenset({<Reaction PGI at 0x7f227a10b1d0>})
+
+
+
+Altering the gene\_reaction\_rule will create new gene objects if
+necessary and update all relationships.
+
+.. code:: python
+
+ pgi.gene_reaction_rule = "(spam or eggs)"
+ pgi.genes
+
+
+
+.. parsed-literal::
+
+ frozenset({<Gene eggs at 0x7f2279d7ec90>, <Gene spam at 0x7f2279d7edd0>})
+
+
+
+.. code:: python
+
+ pgi_gene.reactions
+
+
+
+.. parsed-literal::
+
+ frozenset()
+
+
+
+Newly created genes are also added to the model
+
+.. code:: python
+
+ model.genes.get_by_id("spam")
+
+
+
+.. parsed-literal::
+
+ <Gene spam at 0x7f2279d7edd0>
+
+
+
+The delete\_model\_genes function will evaluate the gpr and set the
+upper and lower bounds to 0 if the reaction is knocked out. This
+function can preserve existing deletions or reset them using the
+cumulative\_deletions flag.
+
+.. code:: python
+
+ cobra.manipulation.delete_model_genes(model, ["spam"], cumulative_deletions=True)
+ print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+ cobra.manipulation.delete_model_genes(model, ["eggs"], cumulative_deletions=True)
+ print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+
+.. parsed-literal::
+
+ 0 < pgi < 1000
+ 0.0 < pgi < 0.0
+
+
+The undelete\_model\_genes can be used to reset a gene deletion
+
+.. code:: python
+
+ cobra.manipulation.undelete_model_genes(model)
+ print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+
+.. parsed-literal::
+
+ 0 < pgi < 1000
+
diff --git a/documentation_builder/index.rst b/documentation_builder/index.rst
new file mode 100644
index 0000000..2038d71
--- /dev/null
+++ b/documentation_builder/index.rst
@@ -0,0 +1,29 @@
+Documentation for COBRApy
+=========================
+For installation instructions, please see `INSTALL.md
+<https://github.com/opencobra/cobrapy/blob/master/INSTALL.md>`_.
+
+.. toctree::
+ :numbered:
+ :maxdepth: 2
+
+ getting_started
+ building_model
+ io
+ simulating
+ deletions
+ phenotype_phase_plane
+ milp
+ qp
+ loopless
+ faq
+ cobra
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+
diff --git a/documentation_builder/io.ipynb b/documentation_builder/io.ipynb
new file mode 100644
index 0000000..2f72a57
--- /dev/null
+++ b/documentation_builder/io.ipynb
@@ -0,0 +1,310 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:7291cbe8367fe9d4f6ab1d7e394dbff9483b4b934edc182d648a499b003690ab"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Reading and Writing Models"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/io.ipynb).\n",
+ "\n",
+ "Functions for reading and writing models to various formats are included with cobrapy. The package also ships with models of *E. coli* and *Salmonella* in various formats for testing purposes. In this example, we will use these functions to read models from these test files in various formats."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "import cobra.test\n",
+ "\n",
+ "print(\"E. coli test files: \")\n",
+ "print(\", \".join([i for i in dir(cobra.test) if i.startswith(\"ecoli\")]))\n",
+ "print(\"\")\n",
+ "print(\"Salmonella test files: \")\n",
+ "print(\", \".join([i for i in dir(cobra.test) if i.startswith(\"salmonella\")]))\n",
+ "\n",
+ "salmonella_model = cobra.test.create_test_model(\"salmonella\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "E. coli test files: \n",
+ "ecoli_json, ecoli_mat, ecoli_pickle, ecoli_sbml\n",
+ "\n",
+ "Salmonella test files: \n",
+ "salmonella_fbc_sbml, salmonella_pickle, salmonella_sbml\n"
+ ]
+ }
+ ],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "JSON"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "cobrapy has a [JSON](https://en.wikipedia.org/wiki/JSON) (JavaScript Object Notation) representation. This is the ideal format for storing a cobra model on a computer, or for interoperability with [escher](https://escher.github.io). Additional fields, however, will not be saved."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.load_json_model(cobra.test.ecoli_json)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 2,
+ "text": [
+ "<Model iJO1366 at 0x7f8d2fa20150>"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.write_sbml_model(salmonella_model, \"test.json\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "SBML"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The [Systems Biology Markup Language](http://sbml.org) is an XML-based standard format for distributing models. Cobrapy can use [libsbml](http://sbml.org/Software/libSBML), which must be installed separately (see installation instructions) to read and write SBML files.\n",
+ "\n",
+ "Initially, the COBRA format for SBML files used the \"notes\" field in SBML files. More recently, however, the [FBC extension](http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Flux_Balance_Constraints_%28flux%29) to SBML has come into existence, which defines its own fields.\n",
+ "\n",
+ "Cobrapy can handle both formats (assuming libsbml has been installed correctly). When reading in a model, it will automatically detect whether fbc was used or not. When writing a model, the use_fbc_package can be used."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.read_sbml_model(cobra.test.salmonella_sbml)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "<Model Salmonella_consensus_build_1 at 0x7f8d480ad710>"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.read_sbml_model(cobra.test.salmonella_fbc_sbml)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 5,
+ "text": [
+ "<Model Salmonella_consensus_build_1 at 0x7f8d480ad5d0>"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.write_sbml_model(salmonella_model, \"test.xml\",\n",
+ " use_fbc_package=False)\n",
+ "cobra.io.write_sbml_model(salmonella_model, \"test_fbc.xml\",\n",
+ " use_fbc_package=True)\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "MATLAB"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Often, models may be imported and exported soley for the purposes of working with the same models in cobrapy and the [MATLAB cobra toolbox](http://opencobra.github.io/cobratoolbox/). MATLAB has its own \".mat\" format for storing variables. Reading and writing to these mat files from python requires scipy, and is generally much faster than using libsbml.\n",
+ "\n",
+ "A mat file can contain multiple MATLAB variables. Therefore, the variable name of the model in the MATLAB file can be passed into the reading function:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.load_matlab_model(cobra.test.ecoli_mat, variable_name=\"iJO1366\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 7,
+ "text": [
+ "<Model iJO1366 at 0x7f8d48090b50>"
+ ]
+ }
+ ],
+ "prompt_number": 7
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "If the mat file contains only a single model, cobra can figure out which variable to read from, and the variable_name paramter is unnecessary."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.load_matlab_model(cobra.test.ecoli_mat)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 8,
+ "text": [
+ "<Model iJO1366 at 0x7f8d2d85af10>"
+ ]
+ }
+ ],
+ "prompt_number": 8
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Saving models to mat files is also relatively straightforward"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cobra.io.save_matlab_model(ecoli_model, \"test_ecoli_model.mat\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "ename": "NameError",
+ "evalue": "name 'ecoli_model' is not defined",
+ "output_type": "pyerr",
+ "traceback": [
+ "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m\n\u001b[1;31mNameError\u001b[0m Traceback (most recent call last)",
+ "\u001b[1;32m<ipython-input-9-899c9ca38882>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m()\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[0mcobra\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mio\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0msave_matlab_model\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mecoli_model\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m\"test_ecoli_model.mat\"\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m",
+ "\u001b[1;31mNameError\u001b[0m: name 'ecoli_model' is not defined"
+ ]
+ }
+ ],
+ "prompt_number": 9
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Pickle"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Cobra models can be serialized using the python serialization format, [pickle](https://docs.python.org/2/library/pickle.html). While this will save any extra fields which may have been created, it does not work with any other tools and can break between cobrapy major versions. JSON is generally the preferred format."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from cPickle import load, dump\n",
+ "\n",
+ "# read in the test models\n",
+ "with open(cobra.test.ecoli_pickle, \"rb\") as infile:\n",
+ " ecoli_model = load(infile)\n",
+ "with open(cobra.test.salmonella_pickle, \"rb\") as infile:\n",
+ " salmonella_model = load(infile)\n",
+ "\n",
+ "# output to a file\n",
+ "with open(\"test_output.pickle\", \"wb\") as outfile:\n",
+ " dump(salmonella_model, outfile)\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": []
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/io.rst b/documentation_builder/io.rst
new file mode 100644
index 0000000..bcd8112
--- /dev/null
+++ b/documentation_builder/io.rst
@@ -0,0 +1,189 @@
+
+Reading and Writing Models
+==========================
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/io.ipynb>`__.
+
+Functions for reading and writing models to various formats are included
+with cobrapy. The package also ships with models of *E. coli* and
+*Salmonella* in various formats for testing purposes. In this example,
+we will use these functions to read models from these test files in
+various formats.
+
+.. code:: python
+
+ import cobra.test
+
+ print("E. coli test files: ")
+ print(", ".join([i for i in dir(cobra.test) if i.startswith("ecoli")]))
+ print("")
+ print("Salmonella test files: ")
+ print(", ".join([i for i in dir(cobra.test) if i.startswith("salmonella")]))
+
+ salmonella_model = cobra.test.create_test_model("salmonella")
+
+.. parsed-literal::
+
+ E. coli test files:
+ ecoli_json, ecoli_mat, ecoli_pickle, ecoli_sbml
+
+ Salmonella test files:
+ salmonella_fbc_sbml, salmonella_pickle, salmonella_sbml
+
+
+JSON
+----
+
+cobrapy has a `JSON <https://en.wikipedia.org/wiki/JSON>`__ (JavaScript
+Object Notation) representation. This is the ideal format for storing a
+cobra model on a computer, or for interoperability with
+`escher <https://escher.github.io>`__. Additional fields, however, will
+not be saved.
+
+.. code:: python
+
+ cobra.io.load_json_model(cobra.test.ecoli_json)
+
+
+
+.. parsed-literal::
+
+ <Model iJO1366 at 0x7f8d2fa20150>
+
+
+
+.. code:: python
+
+ cobra.io.write_sbml_model(salmonella_model, "test.json")
+SBML
+----
+
+The `Systems Biology Markup Language <http://sbml.org>`__ is an
+XML-based standard format for distributing models. Cobrapy can use
+`libsbml <http://sbml.org/Software/libSBML>`__, which must be installed
+separately (see installation instructions) to read and write SBML files.
+
+Initially, the COBRA format for SBML files used the "notes" field in
+SBML files. More recently, however, the `FBC
+extension <http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Flux_Balance_Constraints_%28flux%29>`__
+to SBML has come into existence, which defines its own fields.
+
+Cobrapy can handle both formats (assuming libsbml has been installed
+correctly). When reading in a model, it will automatically detect
+whether fbc was used or not. When writing a model, the use\_fbc\_package
+can be used.
+
+.. code:: python
+
+ cobra.io.read_sbml_model(cobra.test.salmonella_sbml)
+
+
+
+.. parsed-literal::
+
+ <Model Salmonella_consensus_build_1 at 0x7f8d480ad710>
+
+
+
+.. code:: python
+
+ cobra.io.read_sbml_model(cobra.test.salmonella_fbc_sbml)
+
+
+
+.. parsed-literal::
+
+ <Model Salmonella_consensus_build_1 at 0x7f8d480ad5d0>
+
+
+
+.. code:: python
+
+ cobra.io.write_sbml_model(salmonella_model, "test.xml",
+ use_fbc_package=False)
+ cobra.io.write_sbml_model(salmonella_model, "test_fbc.xml",
+ use_fbc_package=True)
+
+MATLAB
+------
+
+Often, models may be imported and exported soley for the purposes of
+working with the same models in cobrapy and the `MATLAB cobra
+toolbox <http://opencobra.github.io/cobratoolbox/>`__. MATLAB has its
+own ".mat" format for storing variables. Reading and writing to these
+mat files from python requires scipy, and is generally much faster than
+using libsbml.
+
+A mat file can contain multiple MATLAB variables. Therefore, the
+variable name of the model in the MATLAB file can be passed into the
+reading function:
+
+.. code:: python
+
+ cobra.io.load_matlab_model(cobra.test.ecoli_mat, variable_name="iJO1366")
+
+
+
+.. parsed-literal::
+
+ <Model iJO1366 at 0x7f8d48090b50>
+
+
+
+If the mat file contains only a single model, cobra can figure out which
+variable to read from, and the variable\_name paramter is unnecessary.
+
+.. code:: python
+
+ cobra.io.load_matlab_model(cobra.test.ecoli_mat)
+
+
+
+.. parsed-literal::
+
+ <Model iJO1366 at 0x7f8d2d85af10>
+
+
+
+Saving models to mat files is also relatively straightforward
+
+.. code:: python
+
+ cobra.io.save_matlab_model(ecoli_model, "test_ecoli_model.mat")
+
+::
+
+
+ ---------------------------------------------------------------------------
+ NameError Traceback (most recent call last)
+
+ <ipython-input-9-899c9ca38882> in <module>()
+ ----> 1 cobra.io.save_matlab_model(ecoli_model, "test_ecoli_model.mat")
+
+
+ NameError: name 'ecoli_model' is not defined
+
+
+Pickle
+------
+
+Cobra models can be serialized using the python serialization format,
+`pickle <https://docs.python.org/2/library/pickle.html>`__. While this
+will save any extra fields which may have been created, it does not work
+with any other tools and can break between cobrapy major versions. JSON
+is generally the preferred format.
+
+.. code:: python
+
+ from cPickle import load, dump
+
+ # read in the test models
+ with open(cobra.test.ecoli_pickle, "rb") as infile:
+ ecoli_model = load(infile)
+ with open(cobra.test.salmonella_pickle, "rb") as infile:
+ salmonella_model = load(infile)
+
+ # output to a file
+ with open("test_output.pickle", "wb") as outfile:
+ dump(salmonella_model, outfile)
diff --git a/documentation_builder/loopless.ipynb b/documentation_builder/loopless.ipynb
new file mode 100644
index 0000000..d536413
--- /dev/null
+++ b/documentation_builder/loopless.ipynb
@@ -0,0 +1,268 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:9166596ba510dcfab5d2ea0acf45d2627a466ed67974cf738510c3aef3d47f92"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Loopless FBA"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/loopless.ipynb).\n",
+ "\n",
+ "The goal of this procedure is identification of a thermodynamically consistent flux state without loops, as implied by the name.\n",
+ "\n",
+ "Usually, the model has the following constraints.\n",
+ "$$ S \\cdot v = 0 $$\n",
+ "$$ lb \\le v \\le ub $$\n",
+ "\n",
+ "However, this will allow for thermodynamically infeasible loops (referred to as type 3 loops) to occur, where flux flows around a cycle without any net change of metabolites. For most cases, this is not a major issue, as solutions with these loops can usually be converted to equivalent solutions without them. However, if a flux state is desired which does not exhibit any of these loops, loopless FBA can be used. The formulation used here is modified from [Schellenberger et al.](ht [...]
+ "\n",
+ "We can make the model irreversible, so that all reactions will satisfy\n",
+ "$$ 0 \\le lb \\le v \\le ub \\le \\max(ub) $$\n",
+ "\n",
+ "We will add in boolean indicators as well, such that\n",
+ "$$ \\max(ub) i \\ge v $$\n",
+ "$$ i \\in {0, 1} $$\n",
+ "\n",
+ "We also want to ensure that an entry in the row space of S also exists with negative values wherever v is nonzero. In this expression, $1-i$ acts as a not to indicate inactivity of a reaction.\n",
+ "\n",
+ "$$ S^\\mathsf T x - (1 - i) (\\max(ub) + 1) \\le -1 $$\n",
+ "\n",
+ "We will construct an LP integrating both constraints.\n",
+ "\n",
+ "$$ \\left(\n",
+ "\\begin{matrix}\n",
+ "S & 0 & 0\\\\\n",
+ "-I & \\max(ub)I & 0 \\\\\n",
+ "0 & (\\max(ub) + 1)I & S^\\mathsf T\n",
+ "\\end{matrix}\n",
+ "\\right)\n",
+ "\\cdot\n",
+ "\\left(\n",
+ "\\begin{matrix}\n",
+ "v \\\\\n",
+ "i \\\\\n",
+ "x\n",
+ "\\end{matrix}\n",
+ "\\right)\n",
+ "\\begin{matrix}\n",
+ "&=& 0 \\\\\n",
+ "&\\ge& 0 \\\\\n",
+ "&\\le& \\max(ub)\n",
+ "\\end{matrix}$$\n",
+ "\n",
+ "Note that these extra constraints are not applied to boundary reactions which bring metabolites in and out of the system."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "import cobra.test\n",
+ "from cobra import Reaction, Metabolite, Model\n",
+ "from cobra.flux_analysis.loopless import construct_loopless_model\n",
+ "from cobra.solvers import get_solver_name\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We will demonstrate with a toy model which has a simple loop cycling A -> B -> C -> A, with A allowed to enter the system and C allowed to leave. A graphical view of the system is drawn below:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "figure(figsize=(10.5, 4.5), frameon=False)\n",
+ "gca().axis(\"off\")\n",
+ "xlim(0.5, 3.5)\n",
+ "ylim(0.7, 2.2)\n",
+ "arrow_params = {\"head_length\": 0.08, \"head_width\": 0.1, \"ec\": \"k\", \"fc\": \"k\"}\n",
+ "text_params = {\"fontsize\": 25, \"horizontalalignment\": \"center\", \"verticalalignment\": \"center\"}\n",
+ "arrow(0.5, 1, 0.85, 0, **arrow_params) # EX_A\n",
+ "arrow(1.5, 1, 0.425, 0.736, **arrow_params) # v1\n",
+ "arrow(2.04, 1.82, 0.42, -0.72, **arrow_params) # v2\n",
+ "arrow(2.4, 1, -0.75, 0, **arrow_params) # v3\n",
+ "arrow(2.6, 1, 0.75, 0, **arrow_params)\n",
+ "# reaction labels\n",
+ "text(0.9, 1.15, \"EX_A\", **text_params)\n",
+ "text(1.6, 1.5, r\"v$_1$\", **text_params)\n",
+ "text(2.4, 1.5, r\"v$_2$\", **text_params)\n",
+ "text(2, 0.85, r\"v$_3$\", **text_params)\n",
+ "text(2.9, 1.15, \"DM_C\", **text_params)\n",
+ "# metabolite labels\n",
+ "scatter(1.5, 1, s=250, color='#c994c7')\n",
+ "text(1.5, 0.9, \"A\", **text_params)\n",
+ "scatter(2, 1.84, s=250, color='#c994c7')\n",
+ "text(2, 1.95, \"B\", **text_params)\n",
+ "scatter(2.5, 1, s=250, color='#c994c7')\n",
+ "text(2.5, 0.9, \"C\", **text_params);"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": "iVBORw0KGgoAAAANSUhEUgAAAnIAAAEcCAYAAABDOFkiAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz\nAAALEgAACxIB0t1+/AAAIABJREFUeJzt3Xe4JFWd//H3dzIMDEiOgigGFhdEJIkBwbACZgWRjP4M\nBEVXxDWCmJY1O7oGQBEDqKigiAl0DczOggkRFRRUBETJDDDx+/ujTjOXy823u6ur+/16nvvUrb7V\nXd+BDp8+p845kZlIkiSpeWbUXYAkSZKmxiAnSZLUUAY5SZKkhjLISZIkNZRBTpIkqaEMcpIkSQ1l\nkJMkSWoog5wkSVJDGeQkSZIayiAnSZLUUAY5SZKkhjLISZIkNZRBTpIkqaEMcpIkSQ1lkJMkSWoo\ng5wkSVJDGeQkSZIayiAnSZLUUAY5SZKkhjLISZIkNZRBTpIkqaEMcpIkSQ1lkJMkSWoog5wkSVJD\nGeQkSZIay [...]
+ "text": [
+ "<matplotlib.figure.Figure at 0x2d53490>"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "test_model = Model()\n",
+ "test_model.add_metabolites(Metabolite(\"A\"))\n",
+ "test_model.add_metabolites(Metabolite(\"B\"))\n",
+ "test_model.add_metabolites(Metabolite(\"C\"))\n",
+ "EX_A = Reaction(\"EX_A\")\n",
+ "EX_A.add_metabolites({test_model.metabolites.A: 1})\n",
+ "DM_C = Reaction(\"DM_C\")\n",
+ "DM_C.add_metabolites({test_model.metabolites.C: -1})\n",
+ "v1 = Reaction(\"v1\")\n",
+ "v1.add_metabolites({test_model.metabolites.A: -1, test_model.metabolites.B: 1})\n",
+ "v2 = Reaction(\"v2\")\n",
+ "v2.add_metabolites({test_model.metabolites.B: -1, test_model.metabolites.C: 1})\n",
+ "v3 = Reaction(\"v3\")\n",
+ "v3.add_metabolites({test_model.metabolites.C: -1, test_model.metabolites.A: 1})\n",
+ "DM_C.objective_coefficient = 1\n",
+ "test_model.add_reactions([EX_A, DM_C, v1, v2, v3])\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "While this model contains a loop, a flux state exists which has no flux through reaction v3, and is identified by loopless FBA."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "construct_loopless_model(test_model).optimize()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "<Solution 1000.00 at 0x62cd250>"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "However, if flux is forced through v3, then there is no longer a feasible loopless solution."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "v3.lower_bound = 1\n",
+ "construct_loopless_model(test_model).optimize()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 5,
+ "text": [
+ "<Solution 'infeasible' at 0x62cd5d0>"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Loopless FBA is also possible on genome scale models, but it requires a capable MILP solver."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "salmonella = cobra.test.create_test_model()\n",
+ "construct_loopless_model(salmonella).optimize(solver=get_solver_name(mip=True))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 6,
+ "text": [
+ "<Solution 0.38 at 0x9e67650>"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "ecoli = cobra.test.create_test_model(\"ecoli\")\n",
+ "construct_loopless_model(ecoli).optimize(solver=get_solver_name(mip=True))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 7,
+ "text": [
+ "<Solution 0.98 at 0x8e463d0>"
+ ]
+ }
+ ],
+ "prompt_number": 7
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/loopless.rst b/documentation_builder/loopless.rst
new file mode 100644
index 0000000..88ddb99
--- /dev/null
+++ b/documentation_builder/loopless.rst
@@ -0,0 +1,189 @@
+
+Loopless FBA
+============
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/loopless.ipynb>`__.
+
+The goal of this procedure is identification of a thermodynamically
+consistent flux state without loops, as implied by the name.
+
+Usually, the model has the following constraints.
+
+.. math:: S \cdot v = 0
+
+.. math:: lb \le v \le ub
+
+However, this will allow for thermodynamically infeasible loops
+(referred to as type 3 loops) to occur, where flux flows around a cycle
+without any net change of metabolites. For most cases, this is not a
+major issue, as solutions with these loops can usually be converted to
+equivalent solutions without them. However, if a flux state is desired
+which does not exhibit any of these loops, loopless FBA can be used. The
+formulation used here is modified from `Schellenberger et
+al. <http://dx.doi.org/10.1016/j.bpj.2010.12.3707>`__
+
+We can make the model irreversible, so that all reactions will satisfy
+
+.. math:: 0 \le lb \le v \le ub \le \max(ub)
+
+We will add in boolean indicators as well, such that
+
+.. math:: \max(ub) i \ge v
+
+.. math:: i \in {0, 1}
+
+We also want to ensure that an entry in the row space of S also exists
+with negative values wherever v is nonzero. In this expression,
+:math:`1-i` acts as a not to indicate inactivity of a reaction.
+
+.. math:: S^\mathsf T x - (1 - i) (\max(ub) + 1) \le -1
+
+We will construct an LP integrating both constraints.
+
+.. math::
+
+ \left(
+ \begin{matrix}
+ S & 0 & 0\\
+ -I & \max(ub)I & 0 \\
+ 0 & (\max(ub) + 1)I & S^\mathsf T
+ \end{matrix}
+ \right)
+ \cdot
+ \left(
+ \begin{matrix}
+ v \\
+ i \\
+ x
+ \end{matrix}
+ \right)
+ \begin{matrix}
+ &=& 0 \\
+ &\ge& 0 \\
+ &\le& \max(ub)
+ \end{matrix}
+
+Note that these extra constraints are not applied to boundary reactions
+which bring metabolites in and out of the system.
+
+.. code:: python
+
+ import cobra.test
+ from cobra import Reaction, Metabolite, Model
+ from cobra.flux_analysis.loopless import construct_loopless_model
+ from cobra.solvers import get_solver_name
+
+We will demonstrate with a toy model which has a simple loop cycling A
+-> B -> C -> A, with A allowed to enter the system and C allowed to
+leave. A graphical view of the system is drawn below:
+
+.. code:: python
+
+ figure(figsize=(10.5, 4.5), frameon=False)
+ gca().axis("off")
+ xlim(0.5, 3.5)
+ ylim(0.7, 2.2)
+ arrow_params = {"head_length": 0.08, "head_width": 0.1, "ec": "k", "fc": "k"}
+ text_params = {"fontsize": 25, "horizontalalignment": "center", "verticalalignment": "center"}
+ arrow(0.5, 1, 0.85, 0, **arrow_params) # EX_A
+ arrow(1.5, 1, 0.425, 0.736, **arrow_params) # v1
+ arrow(2.04, 1.82, 0.42, -0.72, **arrow_params) # v2
+ arrow(2.4, 1, -0.75, 0, **arrow_params) # v3
+ arrow(2.6, 1, 0.75, 0, **arrow_params)
+ # reaction labels
+ text(0.9, 1.15, "EX_A", **text_params)
+ text(1.6, 1.5, r"v$_1$", **text_params)
+ text(2.4, 1.5, r"v$_2$", **text_params)
+ text(2, 0.85, r"v$_3$", **text_params)
+ text(2.9, 1.15, "DM_C", **text_params)
+ # metabolite labels
+ scatter(1.5, 1, s=250, color='#c994c7')
+ text(1.5, 0.9, "A", **text_params)
+ scatter(2, 1.84, s=250, color='#c994c7')
+ text(2, 1.95, "B", **text_params)
+ scatter(2.5, 1, s=250, color='#c994c7')
+ text(2.5, 0.9, "C", **text_params);
+
+
+.. image:: loopless_files/loopless_4_0.png
+
+
+.. code:: python
+
+ test_model = Model()
+ test_model.add_metabolites(Metabolite("A"))
+ test_model.add_metabolites(Metabolite("B"))
+ test_model.add_metabolites(Metabolite("C"))
+ EX_A = Reaction("EX_A")
+ EX_A.add_metabolites({test_model.metabolites.A: 1})
+ DM_C = Reaction("DM_C")
+ DM_C.add_metabolites({test_model.metabolites.C: -1})
+ v1 = Reaction("v1")
+ v1.add_metabolites({test_model.metabolites.A: -1, test_model.metabolites.B: 1})
+ v2 = Reaction("v2")
+ v2.add_metabolites({test_model.metabolites.B: -1, test_model.metabolites.C: 1})
+ v3 = Reaction("v3")
+ v3.add_metabolites({test_model.metabolites.C: -1, test_model.metabolites.A: 1})
+ DM_C.objective_coefficient = 1
+ test_model.add_reactions([EX_A, DM_C, v1, v2, v3])
+
+While this model contains a loop, a flux state exists which has no flux
+through reaction v3, and is identified by loopless FBA.
+
+.. code:: python
+
+ construct_loopless_model(test_model).optimize()
+
+
+
+.. parsed-literal::
+
+ <Solution 1000.00 at 0x62cd250>
+
+
+
+However, if flux is forced through v3, then there is no longer a
+feasible loopless solution.
+
+.. code:: python
+
+ v3.lower_bound = 1
+ construct_loopless_model(test_model).optimize()
+
+
+
+.. parsed-literal::
+
+ <Solution 'infeasible' at 0x62cd5d0>
+
+
+
+Loopless FBA is also possible on genome scale models, but it requires a
+capable MILP solver.
+
+.. code:: python
+
+ salmonella = cobra.test.create_test_model()
+ construct_loopless_model(salmonella).optimize(solver=get_solver_name(mip=True))
+
+
+
+.. parsed-literal::
+
+ <Solution 0.38 at 0x9e67650>
+
+
+
+.. code:: python
+
+ ecoli = cobra.test.create_test_model("ecoli")
+ construct_loopless_model(ecoli).optimize(solver=get_solver_name(mip=True))
+
+
+
+.. parsed-literal::
+
+ <Solution 0.98 at 0x8e463d0>
+
+
diff --git a/documentation_builder/loopless_files/loopless_4_0.png b/documentation_builder/loopless_files/loopless_4_0.png
new file mode 100644
index 0000000..f2fb04b
Binary files /dev/null and b/documentation_builder/loopless_files/loopless_4_0.png differ
diff --git a/documentation_builder/make.bat b/documentation_builder/make.bat
new file mode 100644
index 0000000..4a6db96
--- /dev/null
+++ b/documentation_builder/make.bat
@@ -0,0 +1,190 @@
+ at ECHO OFF
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+ set SPHINXBUILD=sphinx-build
+)
+set BUILDDIR=..\documentation
+set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% .
+set I18NSPHINXOPTS=%SPHINXOPTS% .
+if NOT "%PAPER%" == "" (
+ set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS%
+ set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS%
+)
+
+if "%1" == "" goto help
+
+if "%1" == "help" (
+ :help
+ echo.Please use `make ^<target^>` where ^<target^> is one of
+ echo. html to make standalone HTML files
+ echo. dirhtml to make HTML files named index.html in directories
+ echo. singlehtml to make a single large HTML file
+ echo. pickle to make pickle files
+ echo. json to make JSON files
+ echo. htmlhelp to make HTML files and a HTML help project
+ echo. qthelp to make HTML files and a qthelp project
+ echo. devhelp to make HTML files and a Devhelp project
+ echo. epub to make an epub
+ echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter
+ echo. text to make text files
+ echo. man to make manual pages
+ echo. texinfo to make Texinfo files
+ echo. gettext to make PO message catalogs
+ echo. changes to make an overview over all changed/added/deprecated items
+ echo. linkcheck to check all external links for integrity
+ echo. doctest to run all doctests embedded in the documentation if enabled
+ goto end
+)
+
+if "%1" == "clean" (
+ for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i
+ del /q /s %BUILDDIR%\*
+ goto end
+)
+
+if "%1" == "html" (
+ %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The HTML pages are in %BUILDDIR%/html.
+ goto end
+)
+
+if "%1" == "dirhtml" (
+ %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml.
+ goto end
+)
+
+if "%1" == "singlehtml" (
+ %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml.
+ goto end
+)
+
+if "%1" == "pickle" (
+ %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can process the pickle files.
+ goto end
+)
+
+if "%1" == "json" (
+ %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can process the JSON files.
+ goto end
+)
+
+if "%1" == "htmlhelp" (
+ %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can run HTML Help Workshop with the ^
+.hhp project file in %BUILDDIR%/htmlhelp.
+ goto end
+)
+
+if "%1" == "qthelp" (
+ %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can run "qcollectiongenerator" with the ^
+.qhcp project file in %BUILDDIR%/qthelp, like this:
+ echo.^> qcollectiongenerator %BUILDDIR%\qthelp\cobra.qhcp
+ echo.To view the help file:
+ echo.^> assistant -collectionFile %BUILDDIR%\qthelp\cobra.ghc
+ goto end
+)
+
+if "%1" == "devhelp" (
+ %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished.
+ goto end
+)
+
+if "%1" == "epub" (
+ %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The epub file is in %BUILDDIR%/epub.
+ goto end
+)
+
+if "%1" == "latex" (
+ %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; the LaTeX files are in %BUILDDIR%/latex.
+ goto end
+)
+
+if "%1" == "text" (
+ %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The text files are in %BUILDDIR%/text.
+ goto end
+)
+
+if "%1" == "man" (
+ %SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The manual pages are in %BUILDDIR%/man.
+ goto end
+)
+
+if "%1" == "texinfo" (
+ %SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo.
+ goto end
+)
+
+if "%1" == "gettext" (
+ %SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The message catalogs are in %BUILDDIR%/locale.
+ goto end
+)
+
+if "%1" == "changes" (
+ %SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.The overview file is in %BUILDDIR%/changes.
+ goto end
+)
+
+if "%1" == "linkcheck" (
+ %SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Link check complete; look for any errors in the above output ^
+or in %BUILDDIR%/linkcheck/output.txt.
+ goto end
+)
+
+if "%1" == "doctest" (
+ %SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Testing of doctests in the sources finished, look at the ^
+results in %BUILDDIR%/doctest/output.txt.
+ goto end
+)
+
+:end
diff --git a/documentation_builder/milp.ipynb b/documentation_builder/milp.ipynb
new file mode 100644
index 0000000..8d73ba8
--- /dev/null
+++ b/documentation_builder/milp.ipynb
@@ -0,0 +1,429 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:15b2c40ef0fb93bc5f72342223ba2b9be518efe687bdef60766ecf17864db66d"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Mixed-Integer Linear Programming"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/milp.ipynb)."
+ ]
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Ice Cream"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example was originally contributed by Joshua Lerman.\n",
+ "\n",
+ "An ice cream stand sells cones and popsicles. It wants to maximize its profit, but is subject to a budget.\n",
+ "\n",
+ "We can write this problem as a linear program:\n",
+ "\n",
+ "> **max** cone $\\cdot$ cone_margin + popsicle $\\cdot$ popsicle margin\n",
+ "\n",
+ "> *subject to*\n",
+ "\n",
+ "> cone $\\cdot$ cone_cost + popsicle $\\cdot$ popsicle_cost $\\le$ budget"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cone_selling_price = 7.\n",
+ "cone_production_cost = 3.\n",
+ "popsicle_selling_price = 2.\n",
+ "popsicle_production_cost = 1.\n",
+ "starting_budget = 100.\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This problem can be written as a cobra.Model"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from cobra import Model, Metabolite, Reaction\n",
+ "\n",
+ "cone = Reaction(\"cone\")\n",
+ "popsicle = Reaction(\"popsicle\")\n",
+ "\n",
+ "# constrainted to a budget\n",
+ "budget = Metabolite(\"budget\")\n",
+ "budget._constraint_sense = \"L\"\n",
+ "budget._bound = starting_budget\n",
+ "cone.add_metabolites({budget: cone_production_cost})\n",
+ "popsicle.add_metabolites({budget: popsicle_production_cost})\n",
+ "\n",
+ "# objective coefficient is the profit to be made from each unit\n",
+ "cone.objective_coefficient = cone_selling_price - cone_production_cost\n",
+ "popsicle.objective_coefficient = popsicle_selling_price - \\\n",
+ " popsicle_production_cost\n",
+ "\n",
+ "m = Model(\"lerman_ice_cream_co\")\n",
+ "m.add_reactions((cone, popsicle))\n",
+ "\n",
+ "m.optimize().x_dict"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 2,
+ "text": [
+ "{'cone': 33.333333333333336, 'popsicle': 0.0}"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "In reality, cones and popsicles can only be sold in integer amounts. We can use the variable kind attribute of a cobra.Reaction to enforce this."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "cone.variable_kind = \"integer\"\n",
+ "popsicle.variable_kind = \"integer\"\n",
+ "m.optimize().x_dict"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 3,
+ "text": [
+ "{'cone': 33.0, 'popsicle': 1.0}"
+ ]
+ }
+ ],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Now the model makes both popsicles and cones."
+ ]
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Restaurant Order"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "To tackle the less immediately obvious problem from the following [XKCD comic](http://xkcd.com/287/):"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from IPython.display import Image\n",
+ "Image(url=r\"http://imgs.xkcd.com/comics/np_complete.png\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "html": [
+ "<img src=\"http://imgs.xkcd.com/comics/np_complete.png\"/>"
+ ],
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "<IPython.core.display.Image at 0x2902d90>"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We want a solution satisfying the following constraints:\n",
+ "\n",
+ "$\\left(\\begin{matrix}2.15&2.75&3.35&3.55&4.20&5.80\\end{matrix}\\right) \\cdot \\vec v = 15.05$\n",
+ "\n",
+ "$\\vec v_i \\ge 0$\n",
+ "\n",
+ "$\\vec v_i \\in \\mathbb{Z}$\n",
+ "\n",
+ "This problem can be written as a COBRA model as well."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "total_cost = Metabolite(\"constraint\")\n",
+ "total_cost._bound = 15.05\n",
+ "\n",
+ "costs = {\"mixed_fruit\": 2.15, \"french_fries\": 2.75, \"side_salad\": 3.35,\n",
+ " \"hot_wings\": 3.55, \"mozarella_sticks\": 4.20, \"sampler_plate\": 5.80}\n",
+ "\n",
+ "m = Model(\"appetizers\")\n",
+ "\n",
+ "for item, cost in costs.items():\n",
+ " r = Reaction(item)\n",
+ " r.add_metabolites({total_cost: cost})\n",
+ " r.variable_kind = \"integer\"\n",
+ " m.add_reaction(r)\n",
+ "\n",
+ "# To add to the problem, suppose we don't want to eat all mixed fruit.\n",
+ "m.reactions.mixed_fruit.objective_coefficient = 1\n",
+ " \n",
+ "m.optimize(objective_sense=\"minimize\").x_dict"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 5,
+ "text": [
+ "{'french_fries': 0.0,\n",
+ " 'hot_wings': 2.0,\n",
+ " 'mixed_fruit': 1.0,\n",
+ " 'mozarella_sticks': 0.0,\n",
+ " 'sampler_plate': 1.0,\n",
+ " 'side_salad': 0.0}"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "There is another solution to this problem, which would have been obtained if we had maximized for mixed fruit instead of minimizing."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "m.optimize(objective_sense=\"maximize\").x_dict"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 6,
+ "text": [
+ "{'french_fries': 0.0,\n",
+ " 'hot_wings': 0.0,\n",
+ " 'mixed_fruit': 7.0,\n",
+ " 'mozarella_sticks': 0.0,\n",
+ " 'sampler_plate': 0.0,\n",
+ " 'side_salad': 0.0}"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Boolean Indicators"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "To give a COBRA-related example, we can create boolean variables as integers, which can serve as indicators for a reaction being active in a model. For a reaction flux $v$ with lower bound -1000 and upper bound 1000, we can create a binary variable $b$ with the following constraints:\n",
+ "\n",
+ "$b \\in \\{0, 1\\}$\n",
+ "\n",
+ "$-1000 \\cdot b \\le v \\le 1000 \\cdot b$\n",
+ "\n",
+ "To introduce the above constraints into a cobra model, we can rewrite them as follows\n",
+ "\n",
+ "$v \\le b \\cdot 1000 \\Rightarrow v- 1000\\cdot b \\le 0$\n",
+ "\n",
+ "$-1000 \\cdot b \\le v \\Rightarrow v + 1000\\cdot b \\ge 0$"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "import cobra.test\n",
+ "model = cobra.test.create_test_model(cobra.test.ecoli_pickle)\n",
+ "\n",
+ "# an indicator for pgi\n",
+ "pgi = model.reactions.get_by_id(\"PGI\")\n",
+ "# make a boolean variable\n",
+ "pgi_indicator = Reaction(\"indicator_PGI\")\n",
+ "pgi_indicator.lower_bound = 0\n",
+ "pgi_indicator.upper_bound = 1\n",
+ "pgi_indicator.variable_kind = \"integer\"\n",
+ "# create constraint for v - 1000 b <= 0\n",
+ "pgi_plus = Metabolite(\"PGI_plus\")\n",
+ "pgi_plus._constraint_sense = \"L\"\n",
+ "# create constraint for v + 1000 b >= 0\n",
+ "pgi_minus = Metabolite(\"PGI_minus\")\n",
+ "pgi_minus._constraint_sense = \"G\"\n",
+ "\n",
+ "pgi_indicator.add_metabolites({pgi_plus: -1000, pgi_minus: 1000})\n",
+ "pgi.add_metabolites({pgi_plus: 1, pgi_minus: 1})\n",
+ "model.add_reaction(pgi_indicator)\n",
+ "\n",
+ "\n",
+ "# an indicator for zwf\n",
+ "zwf = model.reactions.get_by_id(\"G6PDH2r\")\n",
+ "zwf_indicator = Reaction(\"indicator_ZWF\")\n",
+ "zwf_indicator.lower_bound = 0\n",
+ "zwf_indicator.upper_bound = 1\n",
+ "zwf_indicator.variable_kind = \"integer\"\n",
+ "# create constraint for v - 1000 b <= 0\n",
+ "zwf_plus = Metabolite(\"ZWF_plus\")\n",
+ "zwf_plus._constraint_sense = \"L\"\n",
+ "# create constraint for v + 1000 b >= 0\n",
+ "zwf_minus = Metabolite(\"ZWF_minus\")\n",
+ "zwf_minus._constraint_sense = \"G\"\n",
+ "\n",
+ "zwf_indicator.add_metabolites({zwf_plus: -1000, zwf_minus: 1000})\n",
+ "zwf.add_metabolites({zwf_plus: 1, zwf_minus: 1})\n",
+ "\n",
+ "# add the indicator reactions to the model\n",
+ "model.add_reaction(zwf_indicator)\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 7
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "In a model with both these reactions active, the indicators will also be active"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "solution = model.optimize()\n",
+ "print(\"PGI indicator = %d\" % solution.x_dict[\"indicator_PGI\"])\n",
+ "print(\"ZWF indicator = %d\" % solution.x_dict[\"indicator_ZWF\"])\n",
+ "print(\"PGI flux = %.2f\" % solution.x_dict[\"PGI\"])\n",
+ "print(\"ZWF flux = %.2f\" % solution.x_dict[\"G6PDH2r\"])"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "PGI indicator = 1\n",
+ "ZWF indicator = 1\n",
+ "PGI flux = 5.92\n",
+ "ZWF flux = 4.08\n"
+ ]
+ }
+ ],
+ "prompt_number": 8
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Because these boolean indicators are in the model, additional constraints can be applied on them. For example, we can prevent both reactions from being active at the same time by adding the following constraint:\n",
+ "\n",
+ "$b_\\text{pgi} + b_\\text{zwf} = 1$"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "or_constraint = Metabolite(\"or\")\n",
+ "or_constraint._bound = 1\n",
+ "zwf_indicator.add_metabolites({or_constraint: 1})\n",
+ "pgi_indicator.add_metabolites({or_constraint: 1})\n",
+ "\n",
+ "solution = model.optimize()\n",
+ "print(\"PGI indicator = %d\" % solution.x_dict[\"indicator_PGI\"])\n",
+ "print(\"ZWF indicator = %d\" % solution.x_dict[\"indicator_ZWF\"])\n",
+ "print(\"PGI flux = %.2f\" % solution.x_dict[\"PGI\"])\n",
+ "print(\"ZWF flux = %.2f\" % solution.x_dict[\"G6PDH2r\"])"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "PGI indicator = 0\n",
+ "ZWF indicator = 1\n",
+ "PGI flux = 0.00\n",
+ "ZWF flux = 3.98\n"
+ ]
+ }
+ ],
+ "prompt_number": 9
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/milp.rst b/documentation_builder/milp.rst
new file mode 100644
index 0000000..9c6da63
--- /dev/null
+++ b/documentation_builder/milp.rst
@@ -0,0 +1,278 @@
+
+Mixed-Integer Linear Programming
+================================
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/milp.ipynb>`__.
+
+Ice Cream
+---------
+
+This example was originally contributed by Joshua Lerman.
+
+An ice cream stand sells cones and popsicles. It wants to maximize its
+profit, but is subject to a budget.
+
+We can write this problem as a linear program:
+
+ **max** cone :math:`\cdot` cone\_margin + popsicle :math:`\cdot`
+ popsicle margin
+
+ *subject to*
+
+ cone :math:`\cdot` cone\_cost + popsicle :math:`\cdot`
+ popsicle\_cost :math:`\le` budget
+
+.. code:: python
+
+ cone_selling_price = 7.
+ cone_production_cost = 3.
+ popsicle_selling_price = 2.
+ popsicle_production_cost = 1.
+ starting_budget = 100.
+
+This problem can be written as a cobra.Model
+
+.. code:: python
+
+ from cobra import Model, Metabolite, Reaction
+
+ cone = Reaction("cone")
+ popsicle = Reaction("popsicle")
+
+ # constrainted to a budget
+ budget = Metabolite("budget")
+ budget._constraint_sense = "L"
+ budget._bound = starting_budget
+ cone.add_metabolites({budget: cone_production_cost})
+ popsicle.add_metabolites({budget: popsicle_production_cost})
+
+ # objective coefficient is the profit to be made from each unit
+ cone.objective_coefficient = cone_selling_price - cone_production_cost
+ popsicle.objective_coefficient = popsicle_selling_price - \
+ popsicle_production_cost
+
+ m = Model("lerman_ice_cream_co")
+ m.add_reactions((cone, popsicle))
+
+ m.optimize().x_dict
+
+
+
+.. parsed-literal::
+
+ {'cone': 33.333333333333336, 'popsicle': 0.0}
+
+
+
+In reality, cones and popsicles can only be sold in integer amounts. We
+can use the variable kind attribute of a cobra.Reaction to enforce this.
+
+.. code:: python
+
+ cone.variable_kind = "integer"
+ popsicle.variable_kind = "integer"
+ m.optimize().x_dict
+
+
+
+.. parsed-literal::
+
+ {'cone': 33.0, 'popsicle': 1.0}
+
+
+
+Now the model makes both popsicles and cones.
+
+Restaurant Order
+----------------
+
+To tackle the less immediately obvious problem from the following `XKCD
+comic <http://xkcd.com/287/>`__:
+
+.. code:: python
+
+ from IPython.display import Image
+ Image(url=r"http://imgs.xkcd.com/comics/np_complete.png")
+
+
+
+.. raw:: html
+
+ <img src="http://imgs.xkcd.com/comics/np_complete.png"/>
+
+
+
+We want a solution satisfying the following constraints:
+
+:math:`\left(\begin{matrix}2.15&2.75&3.35&3.55&4.20&5.80\end{matrix}\right) \cdot \vec v = 15.05`
+
+:math:`\vec v_i \ge 0`
+
+:math:`\vec v_i \in \mathbb{Z}`
+
+This problem can be written as a COBRA model as well.
+
+.. code:: python
+
+ total_cost = Metabolite("constraint")
+ total_cost._bound = 15.05
+
+ costs = {"mixed_fruit": 2.15, "french_fries": 2.75, "side_salad": 3.35,
+ "hot_wings": 3.55, "mozarella_sticks": 4.20, "sampler_plate": 5.80}
+
+ m = Model("appetizers")
+
+ for item, cost in costs.items():
+ r = Reaction(item)
+ r.add_metabolites({total_cost: cost})
+ r.variable_kind = "integer"
+ m.add_reaction(r)
+
+ # To add to the problem, suppose we don't want to eat all mixed fruit.
+ m.reactions.mixed_fruit.objective_coefficient = 1
+
+ m.optimize(objective_sense="minimize").x_dict
+
+
+
+.. parsed-literal::
+
+ {'french_fries': 0.0,
+ 'hot_wings': 2.0,
+ 'mixed_fruit': 1.0,
+ 'mozarella_sticks': 0.0,
+ 'sampler_plate': 1.0,
+ 'side_salad': 0.0}
+
+
+
+There is another solution to this problem, which would have been
+obtained if we had maximized for mixed fruit instead of minimizing.
+
+.. code:: python
+
+ m.optimize(objective_sense="maximize").x_dict
+
+
+
+.. parsed-literal::
+
+ {'french_fries': 0.0,
+ 'hot_wings': 0.0,
+ 'mixed_fruit': 7.0,
+ 'mozarella_sticks': 0.0,
+ 'sampler_plate': 0.0,
+ 'side_salad': 0.0}
+
+
+
+Boolean Indicators
+------------------
+
+To give a COBRA-related example, we can create boolean variables as
+integers, which can serve as indicators for a reaction being active in a
+model. For a reaction flux :math:`v` with lower bound -1000 and upper
+bound 1000, we can create a binary variable :math:`b` with the following
+constraints:
+
+:math:`b \in \{0, 1\}`
+
+:math:`-1000 \cdot b \le v \le 1000 \cdot b`
+
+To introduce the above constraints into a cobra model, we can rewrite
+them as follows
+
+:math:`v \le b \cdot 1000 \Rightarrow v- 1000\cdot b \le 0`
+
+:math:`-1000 \cdot b \le v \Rightarrow v + 1000\cdot b \ge 0`
+
+.. code:: python
+
+ import cobra.test
+ model = cobra.test.create_test_model(cobra.test.ecoli_pickle)
+
+ # an indicator for pgi
+ pgi = model.reactions.get_by_id("PGI")
+ # make a boolean variable
+ pgi_indicator = Reaction("indicator_PGI")
+ pgi_indicator.lower_bound = 0
+ pgi_indicator.upper_bound = 1
+ pgi_indicator.variable_kind = "integer"
+ # create constraint for v - 1000 b <= 0
+ pgi_plus = Metabolite("PGI_plus")
+ pgi_plus._constraint_sense = "L"
+ # create constraint for v + 1000 b >= 0
+ pgi_minus = Metabolite("PGI_minus")
+ pgi_minus._constraint_sense = "G"
+
+ pgi_indicator.add_metabolites({pgi_plus: -1000, pgi_minus: 1000})
+ pgi.add_metabolites({pgi_plus: 1, pgi_minus: 1})
+ model.add_reaction(pgi_indicator)
+
+
+ # an indicator for zwf
+ zwf = model.reactions.get_by_id("G6PDH2r")
+ zwf_indicator = Reaction("indicator_ZWF")
+ zwf_indicator.lower_bound = 0
+ zwf_indicator.upper_bound = 1
+ zwf_indicator.variable_kind = "integer"
+ # create constraint for v - 1000 b <= 0
+ zwf_plus = Metabolite("ZWF_plus")
+ zwf_plus._constraint_sense = "L"
+ # create constraint for v + 1000 b >= 0
+ zwf_minus = Metabolite("ZWF_minus")
+ zwf_minus._constraint_sense = "G"
+
+ zwf_indicator.add_metabolites({zwf_plus: -1000, zwf_minus: 1000})
+ zwf.add_metabolites({zwf_plus: 1, zwf_minus: 1})
+
+ # add the indicator reactions to the model
+ model.add_reaction(zwf_indicator)
+
+In a model with both these reactions active, the indicators will also be
+active
+
+.. code:: python
+
+ solution = model.optimize()
+ print("PGI indicator = %d" % solution.x_dict["indicator_PGI"])
+ print("ZWF indicator = %d" % solution.x_dict["indicator_ZWF"])
+ print("PGI flux = %.2f" % solution.x_dict["PGI"])
+ print("ZWF flux = %.2f" % solution.x_dict["G6PDH2r"])
+
+.. parsed-literal::
+
+ PGI indicator = 1
+ ZWF indicator = 1
+ PGI flux = 5.92
+ ZWF flux = 4.08
+
+
+Because these boolean indicators are in the model, additional
+constraints can be applied on them. For example, we can prevent both
+reactions from being active at the same time by adding the following
+constraint:
+
+:math:`b_\text{pgi} + b_\text{zwf} = 1`
+
+.. code:: python
+
+ or_constraint = Metabolite("or")
+ or_constraint._bound = 1
+ zwf_indicator.add_metabolites({or_constraint: 1})
+ pgi_indicator.add_metabolites({or_constraint: 1})
+
+ solution = model.optimize()
+ print("PGI indicator = %d" % solution.x_dict["indicator_PGI"])
+ print("ZWF indicator = %d" % solution.x_dict["indicator_ZWF"])
+ print("PGI flux = %.2f" % solution.x_dict["PGI"])
+ print("ZWF flux = %.2f" % solution.x_dict["G6PDH2r"])
+
+.. parsed-literal::
+
+ PGI indicator = 0
+ ZWF indicator = 1
+ PGI flux = 0.00
+ ZWF flux = 3.98
+
diff --git a/documentation_builder/phenotype_phase_plane.ipynb b/documentation_builder/phenotype_phase_plane.ipynb
new file mode 100644
index 0000000..885a0a9
--- /dev/null
+++ b/documentation_builder/phenotype_phase_plane.ipynb
@@ -0,0 +1,199 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:a2c88dc327a82c024dc7b203f410ef1fda65199a58de7677a827da6f351ebd06"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Phenotype Phase Plane"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/phenotype_phase_plane.ipynb)."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Load iJO1366 as a test model and import cobra"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from time import time\n",
+ "\n",
+ "import cobra\n",
+ "from cobra.test import ecoli_pickle, create_test_model\n",
+ "\n",
+ "from cobra.flux_analysis.phenotype_phase_plane import \\\n",
+ " calculate_phenotype_phase_plane\n",
+ "\n",
+ "model = create_test_model(ecoli_pickle)\n",
+ "model"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 1,
+ "text": [
+ "<Model iJO1366 at 0x5b0abd0>"
+ ]
+ }
+ ],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We want to make a phenotype phase plane to evaluate uptakes of Glucose and Oxygen.\n",
+ "\n",
+ "With [matplotlib](http://matplotlib.org) installed, this is as simple as"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "data = calculate_phenotype_phase_plane(model, \"EX_glc_e\", \"EX_o2_e\")\n",
+ "data.plot_matplotlib();"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": "iVBORw0KGgoAAAANSUhEUgAAAV0AAADtCAYAAAAcNaZ2AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz\nAAALEgAACxIB0t1+/AAAIABJREFUeJzsvWmMVQd69/k7+7n7Wgu72TEGDNhgsA023pe2e+90T97u\nqDOKEs0kSif5kA/RfMh8mUgjRZEyM4r0ZvTOm7zpJE7H7aW9YjDGBoxZzGIwOwaqiqpbd9/PPh8O\np/pSXUCBocDt+5OQEHVv3cO95z7nf57l/0CXLl26dOnSpUuXLl26dOnSpUuXLl26dOnSpUuXLl26\ndOnSpUuXLl26dPmaIFzth57neVN1IF26dOny24IgCFeMreJUHkiXLl26fN3pBt0uXbp0mUK6QbdL\nly5dppBu0O3SpUuXKaQbdLt06dJlCukG3S5dunSZQrpBt0uXLl2mkG7Q7dKlS5cppBt0u3Tp0mUK\n6QbdLl26d [...]
+ "text": [
+ "<matplotlib.figure.Figure at 0x6863750>"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "If [brewer2mpl](https://pypi.python.org/pypi/brewer2mpl/) is installed, other color schemes can be used as well"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "data.plot_matplotlib(\"Pastel1\")\n",
+ "data.plot_matplotlib(\"Dark2\");"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": "iVBORw0KGgoAAAANSUhEUgAAAV0AAADtCAYAAAAcNaZ2AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz\nAAALEgAACxIB0t1+/AAAIABJREFUeJzsvXdYlPm5//+awjQYOkgXEKSjKGIvqCh2xe5aVrfvZjeb\n5JyTnJPv9/dLTk7JycmWbLLZddW1966IIlIUsaGIir0BgkqRDtNnvn+wDxkJKrqK7mZe17XXlSsM\nw8dnnrk/7+f+3Pf7Bhs2bNiwYcOGDRs2bNiwYcOGDRs2bNiwYcOGDRs2bNiwYcOGDRs2bNiw8Q+C\n6HE/tFgslq5aiA0bNmz8WBCJRI+MreKuXIgNGzZs/KNjC7o2bNiw0YXYgq4NGzZsdCG2oGvDhg0b\nXYgt6NqwYcNGF2ILujZs2LDRhdiCrg0bNmx0Ibaga8OGDRtdiC3o2rBhw0YXYgu6NmzYsNGF2IKu\nDRs2bHQh0 [...]
+ "text": [
+ "<matplotlib.figure.Figure at 0x8584090>"
+ ]
+ },
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": "iVBORw0KGgoAAAANSUhEUgAAAV0AAADtCAYAAAAcNaZ2AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz\nAAALEgAACxIB0t1+/AAAIABJREFUeJzsvXd4FYeZt31POb2rIYQ6TaKI3jHFuOAS4rjFzrrEduom\nu2lfdt9seXfz7fvuty3ZbIqdxI7tuMYOToxtcKim9947CCGE2um9zHx/DKMcZAECg8D23Nfly1zo\nHGmYM3rmN0/5PWBgYGBgYGBgYGBgYGBgYGBgYGBgYGBgYGBgYGBgYGBgYGBgYGDwKUG42BdVVVX7\n6kAMDAwMPikIgnDB2Cr25YEYGBgYfNoxgq6BgYFBH2IEXQMDA4M+xAi6BgYGBn2IEXQNDAwM+hAj\n6BoYGBj0IUbQNTAwMOhDjKBrYGBg0IcYQdfAwMCgDzGCroGBgUEfYgRdAwMDgz5Evt4HYGDwUVEU\nhUwmg6qqm [...]
+ "text": [
+ "<matplotlib.figure.Figure at 0x8584590>"
+ ]
+ }
+ ],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The number of points which are plotted in each dimension can also be changed"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "calculate_phenotype_phase_plane(model, \"EX_glc_e\", \"EX_o2_e\",\n",
+ " reaction1_npoints=20,\n",
+ " reaction2_npoints=20).plot_matplotlib();"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": "iVBORw0KGgoAAAANSUhEUgAAAV0AAADtCAYAAAAcNaZ2AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz\nAAALEgAACxIB0t1+/AAAIABJREFUeJzsvWdwXHd65vs7nSMyQRAEGEESBAESYM6ZFIPCKIw0Gk2w\nZj3r8ZZ9Pa7dKtf1eLcctsqurfXa63u3NPas5s7aM9LIHgVqxCQxgwlgAAmAJEgQjCBAZHSO55z7\n4fA0OwMgESipnyp9EPt049+nu5/znuf/Ps8LGWSQQQYZZJBBBhlkkEEGGWSQQQYZZJBBBhlkkEEG\nGWSQQQYZZJBBBhlkkEEGGXxNIKR7UJZlebwWkkEGGWTwVYEgCCm5VTOeC8kggwwy+LojQ7oZZJBB\nBuOIDOlmkEEGGYwjMqSbQQYZZDCOyJBuBhlkkME4IkO6GWSQQQbjiAzpZpBBBhmMIzKkm0EGGWQw\njsiQbgYZZ [...]
+ "text": [
+ "<matplotlib.figure.Figure at 0x8555a50>"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The code can also use multiple processes to speed up calculations"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "start_time = time()\n",
+ "calculate_phenotype_phase_plane(model, \"EX_glc_e\", \"EX_o2_e\", n_processes=1)\n",
+ "print(\"took %.2f seconds with 1 process\" % (time() - start_time))\n",
+ "start_time = time()\n",
+ "calculate_phenotype_phase_plane(model, \"EX_glc_e\", \"EX_o2_e\", n_processes=4)\n",
+ "print(\"took %.2f seconds with 4 process\" % (time() - start_time))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "took 5.97 seconds with 1 process\n"
+ ]
+ },
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "took 2.97 seconds with 4 process\n"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/phenotype_phase_plane.rst b/documentation_builder/phenotype_phase_plane.rst
new file mode 100644
index 0000000..731aa58
--- /dev/null
+++ b/documentation_builder/phenotype_phase_plane.rst
@@ -0,0 +1,90 @@
+
+Phenotype Phase Plane
+=====================
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/phenotype_phase_plane.ipynb>`__.
+
+Load iJO1366 as a test model and import cobra
+
+.. code:: python
+
+ from time import time
+
+ import cobra
+ from cobra.test import ecoli_pickle, create_test_model
+
+ from cobra.flux_analysis.phenotype_phase_plane import \
+ calculate_phenotype_phase_plane
+
+ model = create_test_model(ecoli_pickle)
+ model
+
+
+
+.. parsed-literal::
+
+ <Model iJO1366 at 0x5b0abd0>
+
+
+
+We want to make a phenotype phase plane to evaluate uptakes of Glucose
+and Oxygen.
+
+With `matplotlib <http://matplotlib.org>`__ installed, this is as simple
+as
+
+.. code:: python
+
+ data = calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e")
+ data.plot_matplotlib();
+
+
+.. image:: phenotype_phase_plane_files/phenotype_phase_plane_5_0.png
+
+
+If `brewer2mpl <https://pypi.python.org/pypi/brewer2mpl/>`__ is
+installed, other color schemes can be used as well
+
+.. code:: python
+
+ data.plot_matplotlib("Pastel1")
+ data.plot_matplotlib("Dark2");
+
+
+.. image:: phenotype_phase_plane_files/phenotype_phase_plane_7_0.png
+
+
+
+.. image:: phenotype_phase_plane_files/phenotype_phase_plane_7_1.png
+
+
+The number of points which are plotted in each dimension can also be
+changed
+
+.. code:: python
+
+ calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e",
+ reaction1_npoints=20,
+ reaction2_npoints=20).plot_matplotlib();
+
+
+.. image:: phenotype_phase_plane_files/phenotype_phase_plane_9_0.png
+
+
+The code can also use multiple processes to speed up calculations
+
+.. code:: python
+
+ start_time = time()
+ calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e", n_processes=1)
+ print("took %.2f seconds with 1 process" % (time() - start_time))
+ start_time = time()
+ calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e", n_processes=4)
+ print("took %.2f seconds with 4 process" % (time() - start_time))
+
+.. parsed-literal::
+
+ took 5.97 seconds with 1 process
+ took 2.97 seconds with 4 process
+
diff --git a/documentation_builder/phenotype_phase_plane_files/phenotype_phase_plane_5_0.png b/documentation_builder/phenotype_phase_plane_files/phenotype_phase_plane_5_0.png
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diff --git a/documentation_builder/phenotype_phase_plane_files/phenotype_phase_plane_9_0.png b/documentation_builder/phenotype_phase_plane_files/phenotype_phase_plane_9_0.png
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diff --git a/documentation_builder/pyscript.tpl b/documentation_builder/pyscript.tpl
new file mode 100644
index 0000000..693dcfa
--- /dev/null
+++ b/documentation_builder/pyscript.tpl
@@ -0,0 +1,29 @@
+{%- extends 'display_priority.tpl'-%}
+
+{% block input %}
+{{ cell.input }}
+{% endblock input %}
+
+{%- block pyout -%}
+{%- block data_priority scoped -%}
+{{ super() }}
+{%- endblock -%}
+{%- endblock pyout -%}
+
+{% block data_text scoped -%}
+# Output:
+{{output.text | comment_lines }}
+{% endblock data_text %}
+
+{% block stream -%}
+# Prints:
+{{output.text | trim | comment_lines }}
+{% endblock stream %}
+
+{% block markdowncell scoped %}
+{{ cell.source | wrap_text(77) | comment_lines }}
+{% endblock markdowncell %}
+
+{% block headingcell scoped %}
+{{ '#' * cell.level }}{{ cell.source | replace('\n', ' ') | comment_lines }}
+{% endblock headingcell %}
diff --git a/documentation_builder/qp.ipynb b/documentation_builder/qp.ipynb
new file mode 100644
index 0000000..2cc820c
--- /dev/null
+++ b/documentation_builder/qp.ipynb
@@ -0,0 +1,307 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:9ad0e1c925566d6d997098a469ded1521dfd74d5e877febaec8966ea59cfdb0b"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Quadratic Programming"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/qp.ipynb)."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Suppose we want to minimize the Euclidean distance of the solution to the origin while subject to linear constraints. This will require a quadratic objective function. Consider this example problem:\n",
+ "\n",
+ "> **min** $\\frac{1}{2}\\left(x^2 + y^2 \\right)$\n",
+ "\n",
+ "> *subject to*\n",
+ "\n",
+ "> $x + y = 2$\n",
+ "\n",
+ "> $x \\ge 0$\n",
+ "\n",
+ "> $y \\ge 0$\n",
+ "\n",
+ "This problem can be visualized graphically:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from matplotlib.pyplot import figure, xlim, ylim\n",
+ "from mpl_toolkits.axes_grid.axislines import SubplotZero\n",
+ "from numpy import linspace, arange, sqrt, pi, sin, cos, sign\n",
+ "# axis style\n",
+ "def make_plot_ax():\n",
+ " fig = figure(figsize=(6, 5));\n",
+ " ax = SubplotZero(fig, 111); fig.add_subplot(ax)\n",
+ " for direction in [\"xzero\", \"yzero\"]:\n",
+ " ax.axis[direction].set_axisline_style(\"-|>\")\n",
+ " ax.axis[direction].set_visible(True)\n",
+ " for direction in [\"left\", \"right\", \"bottom\", \"top\"]:\n",
+ " ax.axis[direction].set_visible(False)\n",
+ " xlim(-0.1, 2.1); ylim(xlim())\n",
+ " ticks = [0.5 * i for i in range(1, 5)]\n",
+ " labels = [str(i) if i == int(i) else \"\" for i in ticks]\n",
+ " ax.set_xticks(ticks); ax.set_yticks(ticks)\n",
+ " ax.set_xticklabels(labels); ax.set_yticklabels(labels)\n",
+ " ax.axis[\"yzero\"].set_axis_direction(\"left\")\n",
+ " return ax\n",
+ " \n",
+ "ax = make_plot_ax()\n",
+ "ax.plot((0, 2), (2, 0), 'b')\n",
+ "ax.plot([1], [1], 'bo')\n",
+ "\n",
+ "# circular grid\n",
+ "for r in sqrt(2.) + 0.125 * arange(-11, 6):\n",
+ " t = linspace(0., pi/2., 100)\n",
+ " ax.plot(r * cos(t), r * sin(t), '-.', color=\"gray\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": "iVBORw0KGgoAAAANSUhEUgAAAWAAAAEmCAYAAABcYEo9AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz\nAAALEgAACxIB0t1+/AAAIABJREFUeJzsvXlUlFe29/8tpmJGZBYJijigOKBGxTjFIcYhaqIx0RhN\n2nQnJt25Paz7/u5afXu97+17f/17+67uJLeTqG0Sp2jihOJEnEARURlEBhlkRuahqCqqipqf8/uD\nxharUIbzDAXns1bWik/BPhuo2s959t7nu2WEEPCFTCZbD0w4ApR4A7sB/P4mIarFvC3IYDAYDoSM\n3wDs9RNgXQ54mACrJ6ABgDBCSBNvizIYDIaDwHMAlnkB8PvHP+sBBBNCWnlbkMFgMBwIXgNwj4Vk\nMkIIkQmyGIPBYDgATmI7wGAwGMMVFoAZDAZDJFz68bU0chXC5DsYDAZDOvSaemU7YAaDwRAJFoAZ\nDAZDJFgAZ [...]
+ "text": [
+ "<matplotlib.figure.Figure at 0x407ea10>"
+ ]
+ }
+ ],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The objective can be rewritten as $\\frac{1}{2} v^T \\cdot \\mathbf Q \\cdot v$, where\n",
+ "$v = \\left(\\begin{matrix} x \\\\ y\\end{matrix} \\right)$ and\n",
+ "$\\mathbf Q = \\left(\\begin{matrix} 1 & 0\\\\ 0 & 1 \\end{matrix}\\right)$\n",
+ "\n",
+ "The matrix $\\mathbf Q$ can be passed into a cobra model as the quadratic objective."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "import scipy\n",
+ "\n",
+ "from cobra import Reaction, Metabolite, Model, solvers\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The quadratic objective $\\mathbf Q$ should be formatted as a scipy sparse matrix."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "Q = scipy.sparse.eye(2).todok()\n",
+ "Q"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 3,
+ "text": [
+ "<2x2 sparse matrix of type '<type 'numpy.float64'>'\n",
+ "\twith 2 stored elements in Dictionary Of Keys format>"
+ ]
+ }
+ ],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "In this case, the quadratic objective is simply the identity matrix"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "Q.todense()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "matrix([[ 1., 0.],\n",
+ " [ 0., 1.]])"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We need to use a solver that supports quadratic programming, such as gurobi or cplex. If a solver which supports quadratic programming is installed, this function will return its name."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print(solvers.get_solver_name(qp=True))"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "gurobi\n"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "c = Metabolite(\"c\")\n",
+ "c._bound = 2\n",
+ "x = Reaction(\"x\")\n",
+ "y = Reaction(\"y\")\n",
+ "x.add_metabolites({c: 1})\n",
+ "y.add_metabolites({c: 1})\n",
+ "m = Model()\n",
+ "m.add_reactions([x, y])\n",
+ "sol = m.optimize(quadratic_component=Q, objective_sense=\"minimize\")\n",
+ "sol.x_dict"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 6,
+ "text": [
+ "{'x': 1.0, 'y': 1.0}"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Suppose we change the problem to have a mixed linear and quadratic objective.\n",
+ "\n",
+ "> **min** $\\frac{1}{2}\\left(x^2 + y^2 \\right) - y$\n",
+ "\n",
+ "> *subject to*\n",
+ "\n",
+ "> $x + y = 2$\n",
+ "\n",
+ "> $x \\ge 0$\n",
+ "\n",
+ "> $y \\ge 0$\n",
+ "\n",
+ "Graphically, this would be"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "ax = make_plot_ax()\n",
+ "ax.plot((0, 2), (2, 0), 'b')\n",
+ "ax.plot([0.5], [1.5], 'bo')\n",
+ "\n",
+ "yrange = linspace(1, 2, 11)\n",
+ "for r in (yrange ** 2 / 2. - yrange):\n",
+ " t = linspace(-sqrt(2 * r + 1) + 0.000001, sqrt(2 * r + 1) - 0.000001, 1000)\n",
+ " ax.plot(abs(t), 1 + sqrt(2 * r + 1 - t ** 2) * sign(t), '-.', color=\"gray\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": "iVBORw0KGgoAAAANSUhEUgAAAWAAAAEmCAYAAABcYEo9AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz\nAAALEgAACxIB0t1+/AAAIABJREFUeJzt3Xl01OW9P/D3N9tkX8m+QMJigLAEVHYBBQQEJI1aVCy1\nWEFraa+3Pafneu/5tfVeb8+5p0ewglGrqBeUFJAAGgJECJsQExJZkpCFhJCNbGQmmZnMkpnv74/c\nUJKZkOT5bjOTz+ucnlNn5lmI+Ml3ns/zfB6O53lIheO4p4FJe4Ab/sAuAG+d5Xn1YskGJIQQJ8JJ\nG4D9jgGWZYCPCbD4Al0AEM3z/B3JBiWEECchcQDm/AAE/d8/NgCI4Hm+VbIBCSHEiUgagPsNxHE8\nz/OcLIMRQogTcFN6AoQQMlpRACaEEIV4jOCzYqxVyLPeQQghjmPQpVd6AiaEEIVQACaEEIVQACaE\nEIVQACaEE [...]
+ "text": [
+ "<matplotlib.figure.Figure at 0x64c9c50>"
+ ]
+ }
+ ],
+ "prompt_number": 7
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "QP solvers in cobrapy will combine linear and quadratic coefficients. The linear portion will be obtained from the same objective_coefficient attribute used with LP's."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "y.objective_coefficient = -1\n",
+ "sol = m.optimize(quadratic_component=Q, objective_sense=\"minimize\")\n",
+ "sol.x_dict"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 8,
+ "text": [
+ "{'x': 0.5, 'y': 1.5}"
+ ]
+ }
+ ],
+ "prompt_number": 8
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/qp.rst b/documentation_builder/qp.rst
new file mode 100644
index 0000000..24cb932
--- /dev/null
+++ b/documentation_builder/qp.rst
@@ -0,0 +1,185 @@
+
+Quadratic Programming
+=====================
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/qp.ipynb>`__.
+
+Suppose we want to minimize the Euclidean distance of the solution to
+the origin while subject to linear constraints. This will require a
+quadratic objective function. Consider this example problem:
+
+ **min** :math:`\frac{1}{2}\left(x^2 + y^2 \right)`
+
+ *subject to*
+
+ :math:`x + y = 2`
+
+ :math:`x \ge 0`
+
+ :math:`y \ge 0`
+
+This problem can be visualized graphically:
+
+.. code:: python
+
+ from matplotlib.pyplot import figure, xlim, ylim
+ from mpl_toolkits.axes_grid.axislines import SubplotZero
+ from numpy import linspace, arange, sqrt, pi, sin, cos, sign
+ # axis style
+ def make_plot_ax():
+ fig = figure(figsize=(6, 5));
+ ax = SubplotZero(fig, 111); fig.add_subplot(ax)
+ for direction in ["xzero", "yzero"]:
+ ax.axis[direction].set_axisline_style("-|>")
+ ax.axis[direction].set_visible(True)
+ for direction in ["left", "right", "bottom", "top"]:
+ ax.axis[direction].set_visible(False)
+ xlim(-0.1, 2.1); ylim(xlim())
+ ticks = [0.5 * i for i in range(1, 5)]
+ labels = [str(i) if i == int(i) else "" for i in ticks]
+ ax.set_xticks(ticks); ax.set_yticks(ticks)
+ ax.set_xticklabels(labels); ax.set_yticklabels(labels)
+ ax.axis["yzero"].set_axis_direction("left")
+ return ax
+
+ ax = make_plot_ax()
+ ax.plot((0, 2), (2, 0), 'b')
+ ax.plot([1], [1], 'bo')
+
+ # circular grid
+ for r in sqrt(2.) + 0.125 * arange(-11, 6):
+ t = linspace(0., pi/2., 100)
+ ax.plot(r * cos(t), r * sin(t), '-.', color="gray")
+
+
+.. image:: qp_files/qp_3_0.png
+
+
+The objective can be rewritten as
+:math:`\frac{1}{2} v^T \cdot \mathbf Q \cdot v`, where
+:math:`v = \left(\begin{matrix} x \\ y\end{matrix} \right)` and
+:math:`\mathbf Q = \left(\begin{matrix} 1 & 0\\ 0 & 1 \end{matrix}\right)`
+
+The matrix :math:`\mathbf Q` can be passed into a cobra model as the
+quadratic objective.
+
+.. code:: python
+
+ import scipy
+
+ from cobra import Reaction, Metabolite, Model, solvers
+
+The quadratic objective :math:`\mathbf Q` should be formatted as a scipy
+sparse matrix.
+
+.. code:: python
+
+ Q = scipy.sparse.eye(2).todok()
+ Q
+
+
+
+.. parsed-literal::
+
+ <2x2 sparse matrix of type '<type 'numpy.float64'>'
+ with 2 stored elements in Dictionary Of Keys format>
+
+
+
+In this case, the quadratic objective is simply the identity matrix
+
+.. code:: python
+
+ Q.todense()
+
+
+
+.. parsed-literal::
+
+ matrix([[ 1., 0.],
+ [ 0., 1.]])
+
+
+
+We need to use a solver that supports quadratic programming, such as
+gurobi or cplex. If a solver which supports quadratic programming is
+installed, this function will return its name.
+
+.. code:: python
+
+ print(solvers.get_solver_name(qp=True))
+
+.. parsed-literal::
+
+ gurobi
+
+
+.. code:: python
+
+ c = Metabolite("c")
+ c._bound = 2
+ x = Reaction("x")
+ y = Reaction("y")
+ x.add_metabolites({c: 1})
+ y.add_metabolites({c: 1})
+ m = Model()
+ m.add_reactions([x, y])
+ sol = m.optimize(quadratic_component=Q, objective_sense="minimize")
+ sol.x_dict
+
+
+
+.. parsed-literal::
+
+ {'x': 1.0, 'y': 1.0}
+
+
+
+Suppose we change the problem to have a mixed linear and quadratic
+objective.
+
+ **min** :math:`\frac{1}{2}\left(x^2 + y^2 \right) - y`
+
+ *subject to*
+
+ :math:`x + y = 2`
+
+ :math:`x \ge 0`
+
+ :math:`y \ge 0`
+
+Graphically, this would be
+
+.. code:: python
+
+ ax = make_plot_ax()
+ ax.plot((0, 2), (2, 0), 'b')
+ ax.plot([0.5], [1.5], 'bo')
+
+ yrange = linspace(1, 2, 11)
+ for r in (yrange ** 2 / 2. - yrange):
+ t = linspace(-sqrt(2 * r + 1) + 0.000001, sqrt(2 * r + 1) - 0.000001, 1000)
+ ax.plot(abs(t), 1 + sqrt(2 * r + 1 - t ** 2) * sign(t), '-.', color="gray")
+
+
+.. image:: qp_files/qp_14_0.png
+
+
+QP solvers in cobrapy will combine linear and quadratic coefficients.
+The linear portion will be obtained from the same objective\_coefficient
+attribute used with LP's.
+
+.. code:: python
+
+ y.objective_coefficient = -1
+ sol = m.optimize(quadratic_component=Q, objective_sense="minimize")
+ sol.x_dict
+
+
+
+.. parsed-literal::
+
+ {'x': 0.5, 'y': 1.5}
+
+
diff --git a/documentation_builder/qp_files/qp_14_0.png b/documentation_builder/qp_files/qp_14_0.png
new file mode 100644
index 0000000..37dfbe3
Binary files /dev/null and b/documentation_builder/qp_files/qp_14_0.png differ
diff --git a/documentation_builder/qp_files/qp_3_0.png b/documentation_builder/qp_files/qp_3_0.png
new file mode 100644
index 0000000..5644f61
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diff --git a/documentation_builder/simulating.ipynb b/documentation_builder/simulating.ipynb
new file mode 100644
index 0000000..c01f7c1
--- /dev/null
+++ b/documentation_builder/simulating.ipynb
@@ -0,0 +1,251 @@
+{
+ "metadata": {
+ "name": "",
+ "signature": "sha256:2c978fa134850ce153ec772810bd6094669dfc51c0a9e418b2793c02738eec19"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "heading",
+ "level": 1,
+ "metadata": {},
+ "source": [
+ "Simulating with FBA"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "This example is available as an IPython [notebook](http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/simulating.ipynb).\n",
+ "\n",
+ "Simulations using flux balance analysis can be solved using Model.optimize(). This will maximize or minimize (maximizing is the default) flux through the objective reactions.\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "import cobra.test\n",
+ "model = cobra.test.create_test_model()\n"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 1
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Running FBA"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.optimize()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 2,
+ "text": [
+ "<Solution 0.38 at 0x660d990>"
+ ]
+ }
+ ],
+ "prompt_number": 2
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The Model.optimize() function will return a Solution object, which will also be stored at model.solution. A solution object has several attributes:\n",
+ "\n",
+ " - f: the objective value\n",
+ " - status: the status from the linear programming solver\n",
+ " - x_dict: a dictionary of {reaction_id: flux_value} (also called \"primal\")\n",
+ " - x: a list for x_dict\n",
+ " - y_dict: a dictionary of {metabolite_id: dual_value}.\n",
+ " - y: a list for y_dict"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "For example, after the last call to model.optimize(), the status should be 'optimal' if the solver returned no errors, and f should be the objective value"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.solution.status"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 3,
+ "text": [
+ "'optimal'"
+ ]
+ }
+ ],
+ "prompt_number": 3
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.solution.f"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 4,
+ "text": [
+ "0.38000797227551136"
+ ]
+ }
+ ],
+ "prompt_number": 4
+ },
+ {
+ "cell_type": "heading",
+ "level": 2,
+ "metadata": {},
+ "source": [
+ "Changing the Objectives"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The objective function is determined from the objective_coefficient attribute of the objective reaction(s). Currently in the model, there is only one objective reaction, with an objective coefficient of 1."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "{reaction: reaction.objective_coefficient for reaction in model.reactions\n",
+ " if reaction.objective_coefficient > 0}"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 5,
+ "text": [
+ "{<Reaction biomass_iRR1083_metals at 0x660d350>: 1.0}"
+ ]
+ }
+ ],
+ "prompt_number": 5
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The objective function can be changed by using the function Model.change_objective, which will take either a reaction object or just its name."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "# change the objective to ATPM\n",
+ "# the upper bound should be 1000 so we get the actual optimal value\n",
+ "model.reactions.get_by_id(\"ATPM\").upper_bound = 1000.\n",
+ "model.change_objective(\"ATPM\")\n",
+ "{reaction: reaction.objective_coefficient for reaction in model.reactions\n",
+ " if reaction.objective_coefficient > 0}"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 6,
+ "text": [
+ "{<Reaction ATPM at 0x52cb190>: 1.0}"
+ ]
+ }
+ ],
+ "prompt_number": 6
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.optimize()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 7,
+ "text": [
+ "<Solution 119.67 at 0x4c93110>"
+ ]
+ }
+ ],
+ "prompt_number": 7
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The objective function can also be changed by setting Reaction.objective_coefficient directly."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "model.reactions.get_by_id(\"ATPM\").objective_coefficient = 0.\n",
+ "model.reactions.get_by_id(\"biomass_iRR1083_metals\").objective_coefficient = 1.\n",
+ "{reaction: reaction.objective_coefficient for reaction in model.reactions\n",
+ " if reaction.objective_coefficient > 0}"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 8,
+ "text": [
+ "{<Reaction biomass_iRR1083_metals at 0x660d350>: 1.0}"
+ ]
+ }
+ ],
+ "prompt_number": 8
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/documentation_builder/simulating.rst b/documentation_builder/simulating.rst
new file mode 100644
index 0000000..8ba70f4
--- /dev/null
+++ b/documentation_builder/simulating.rst
@@ -0,0 +1,141 @@
+
+Simulating with FBA
+===================
+
+This example is available as an IPython
+`notebook <http://nbviewer.ipython.org/github/opencobra/cobrapy/blob/master/documentation_builder/simulating.ipynb>`__.
+
+Simulations using flux balance analysis can be solved using
+Model.optimize(). This will maximize or minimize (maximizing is the
+default) flux through the objective reactions.
+
+.. code:: python
+
+ import cobra.test
+ model = cobra.test.create_test_model()
+
+Running FBA
+-----------
+
+.. code:: python
+
+ model.optimize()
+
+
+
+.. parsed-literal::
+
+ <Solution 0.38 at 0x660d990>
+
+
+
+The Model.optimize() function will return a Solution object, which will
+also be stored at model.solution. A solution object has several
+attributes:
+
+- f: the objective value
+- status: the status from the linear programming solver
+- x\_dict: a dictionary of {reaction\_id: flux\_value} (also called
+ "primal")
+- x: a list for x\_dict
+- y\_dict: a dictionary of {metabolite\_id: dual\_value}.
+- y: a list for y\_dict
+
+For example, after the last call to model.optimize(), the status should
+be 'optimal' if the solver returned no errors, and f should be the
+objective value
+
+.. code:: python
+
+ model.solution.status
+
+
+
+.. parsed-literal::
+
+ 'optimal'
+
+
+
+.. code:: python
+
+ model.solution.f
+
+
+
+.. parsed-literal::
+
+ 0.38000797227551136
+
+
+
+Changing the Objectives
+-----------------------
+
+The objective function is determined from the objective\_coefficient
+attribute of the objective reaction(s). Currently in the model, there is
+only one objective reaction, with an objective coefficient of 1.
+
+.. code:: python
+
+ {reaction: reaction.objective_coefficient for reaction in model.reactions
+ if reaction.objective_coefficient > 0}
+
+
+
+.. parsed-literal::
+
+ {<Reaction biomass_iRR1083_metals at 0x660d350>: 1.0}
+
+
+
+The objective function can be changed by using the function
+Model.change\_objective, which will take either a reaction object or
+just its name.
+
+.. code:: python
+
+ # change the objective to ATPM
+ # the upper bound should be 1000 so we get the actual optimal value
+ model.reactions.get_by_id("ATPM").upper_bound = 1000.
+ model.change_objective("ATPM")
+ {reaction: reaction.objective_coefficient for reaction in model.reactions
+ if reaction.objective_coefficient > 0}
+
+
+
+.. parsed-literal::
+
+ {<Reaction ATPM at 0x52cb190>: 1.0}
+
+
+
+.. code:: python
+
+ model.optimize()
+
+
+
+.. parsed-literal::
+
+ <Solution 119.67 at 0x4c93110>
+
+
+
+The objective function can also be changed by setting
+Reaction.objective\_coefficient directly.
+
+.. code:: python
+
+ model.reactions.get_by_id("ATPM").objective_coefficient = 0.
+ model.reactions.get_by_id("biomass_iRR1083_metals").objective_coefficient = 1.
+ {reaction: reaction.objective_coefficient for reaction in model.reactions
+ if reaction.objective_coefficient > 0}
+
+
+
+.. parsed-literal::
+
+ {<Reaction biomass_iRR1083_metals at 0x660d350>: 1.0}
+
+
diff --git a/examples/building_model.py b/examples/building_model.py
new file mode 100644
index 0000000..ab6dade
--- /dev/null
+++ b/examples/building_model.py
@@ -0,0 +1,126 @@
+
+## Building a Model
+
+# This simple example (available as an IPython [notebook](http://nbviewer.ipyth
+# on.org/github/opencobra/cobrapy/blob/master/documentation_builder/building_mo
+# del.ipynb)) demonstrates how to create a model, create a reaction, and then
+# add the reaction to the model.
+#
+# We'll use the '3OAS140' reaction from the STM_1.0 model:
+#
+# 1.0 malACP[c] + 1.0 h[c] + 1.0 ddcaACP[c] $\rightarrow$ 1.0 co2[c] + 1.0
+# ACP[c] + 1.0 3omrsACP[c]
+
+# First, create the model and reaction.
+
+from cobra import Model, Reaction, Metabolite
+# Best practise: SBML compliant IDs
+cobra_model = Model('example_cobra_model')
+
+reaction = Reaction('3OAS140')
+reaction.name = '3 oxoacyl acyl carrier protein synthase n C140 '
+reaction.subsystem = 'Cell Envelope Biosynthesis'
+reaction.lower_bound = 0. # This is the default
+reaction.upper_bound = 1000. # This is the default
+reaction.objective_coefficient = 0. # this is the default
+
+
+# We need to create metabolites as well. If we were using an existing model, we
+# could use get_by_id to get the apporpriate Metabolite objects instead.
+
+ACP_c = Metabolite('ACP_c', formula='C11H21N2O7PRS',
+ name='acyl-carrier-protein', compartment='c')
+omrsACP_c = Metabolite('3omrsACP_c', formula='C25H45N2O9PRS',
+ name='3-Oxotetradecanoyl-acyl-carrier-protein', compartment='c')
+co2_c = Metabolite('co2_c', formula='CO2', name='CO2', compartment='c')
+malACP_c = Metabolite('malACP_c', formula='C14H22N2O10PRS',
+ name='Malonyl-acyl-carrier-protein', compartment='c')
+h_c = Metabolite('h_c', formula='H', name='H', compartment='c')
+ddcaACP_c = Metabolite('ddcaACP_c', formula='C23H43N2O8PRS',
+ name='Dodecanoyl-ACP-n-C120ACP', compartment='c')
+
+
+# Adding metabolites to a reaction requires using a dictionary of the
+# metabolites and their stoichiometric coefficients. A group of metabolites can
+# be added all at once, or they can be added one at a time.
+
+reaction.add_metabolites({malACP_c: -1.0,
+ h_c: -1.0,
+ ddcaACP_c: -1.0,
+ co2_c: 1.0,
+ ACP_c: 1.0,
+ omrsACP_c: 1.0})
+
+
+reaction.reaction # This gives a string representation of the reaction
+# Output:
+# 'malACP_c + h_c + ddcaACP_c --> co2_c + 3omrsACP_c + ACP_c'
+
+# The gene_reaction_rule is a boolean representation of the gene requirements
+# for this reaction to be active as described in [Schellenberger et al 2011
+# Nature Protocols
+# 6(9):1290-307](http://dx.doi.org/doi:10.1038/nprot.2011.308). We will assign
+# the gene reaction rule string, which will automatically create the
+# corresponding gene objects.
+
+reaction.gene_reaction_rule = '( STM2378 or STM1197 )'
+reaction.genes
+# Output:
+# frozenset({<Gene STM2378 at 0x3739b10>, <Gene STM1197 at 0x3739b50>})
+
+# At this point in time, the model is still empty
+
+print('%i reactions in initial model' % len(cobra_model.reactions))
+print('%i metabolites in initial model' % len(cobra_model.metabolites))
+print('%i genes in initial model' % len(cobra_model.genes))
+# Prints:
+# 0 reactions in initial model
+# 0 metabolites in initial model
+# 0 genes in initial model
+
+# We will add the reaction to the model, which will also add all associated
+# metabolites and genes
+
+cobra_model.add_reaction(reaction)
+
+# Now there are things in the model
+print('%i reaction in model' % len(cobra_model.reactions))
+print('%i metabolites in model' % len(cobra_model.metabolites))
+print('%i genes in model' % len(cobra_model.genes))
+# Prints:
+# 1 reaction in model
+# 6 metabolites in model
+# 2 genes in model
+
+# We can iterate through the model objects to observe the contents
+
+# Iterate through the the objects in the model
+print("Reactions")
+print("---------")
+for x in cobra_model.reactions:
+ print("%s : %s" % (repr(x), x.reaction))
+print("Metabolites")
+print("-----------")
+for x in cobra_model.metabolites:
+ print('%s : %s' % (repr(x), x.formula))
+print("Genes")
+print("-----")
+for x in cobra_model.genes:
+ reactions_list_str = ", ".join((repr(i) for i in x.reactions))
+ print("%s is associated with reactions: %s" % (repr(x), reactions_list_str))
+# Prints:
+# Reactions
+# ---------
+# <Reaction 3OAS140 at 0x4a18b90> : malACP_c + h_c + ddcaACP_c --> co2_c + 3omrsACP_c + ACP_c
+# Metabolites
+# -----------
+# <Metabolite co2_c at 0x594ba10> : CO2
+# <Metabolite malACP_c at 0x594ba90> : C14H22N2O10PRS
+# <Metabolite h_c at 0x594bb10> : H
+# <Metabolite 3omrsACP_c at 0x594b950> : C25H45N2O9PRS
+# <Metabolite ACP_c at 0x594b990> : C11H21N2O7PRS
+# <Metabolite ddcaACP_c at 0x594bb90> : C23H43N2O8PRS
+# Genes
+# -----
+# <Gene STM2378 at 0x3739b10> is associated with reactions: <Reaction 3OAS140 at 0x4a18b90>
+# <Gene STM1197 at 0x3739b50> is associated with reactions: <Reaction 3OAS140 at 0x4a18b90>
diff --git a/examples/deletions.py b/examples/deletions.py
new file mode 100644
index 0000000..7ae8130
--- /dev/null
+++ b/examples/deletions.py
@@ -0,0 +1,92 @@
+
+## Simulating Deletions
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/deletions.ipynb)
+# .
+
+from time import time
+
+
+from cobra.test import create_test_model, salmonella_pickle, ecoli_pickle
+from cobra.flux_analysis import single_deletion
+from cobra.flux_analysis import double_deletion
+
+
+cobra_model = create_test_model(salmonella_pickle)
+
+
+### Single Deletions
+
+# Perform all single gene deletions on a model
+
+start = time() # start timer()
+growth_rates, statuses = single_deletion(cobra_model)
+print("All single gene deletions completed in %.2f sec" % (time() - start))
+# Prints:
+# All single gene deletions completed in 4.01 sec
+
+# These can also be done for only a subset of genes
+
+single_deletion(cobra_model, element_list=cobra_model.genes[:100]);
+
+
+# Single deletions can also be run on reactions
+
+start = time() # start timer()
+growth_rates, statuses = single_deletion(cobra_model, element_type="reaction")
+print("All single reaction deletions completed in %.2f sec" % (time() - start))
+# Prints:
+# All single reaction deletions completed in 7.41 sec
+
+### Double Deletions
+
+# Double deletions run in a similar way
+
+start = time() # start timer()
+double_deletion(cobra_model, element_list_1=cobra_model.genes[:100])
+print("Double gene deletions for 100 genes completed in %.2f sec" % (time() - start))
+# Prints:
+# Double gene deletions for 100 genes completed in 4.94 sec
+
+# By default, the double deletion function will automatically use
+# multiprocessing, splitting the task over up to 4 cores if they are available.
+# The number of cores can be manually sepcified as well. Setting use of a
+# single core will disable use of the multiprocessing library, which often aids
+# debuggging.
+
+start = time() # start timer()
+double_deletion(cobra_model, element_list_1=cobra_model.genes[:100],
+ number_of_processes=2)
+t1 = time() - start
+print("Double gene deletions for 100 genes completed in %.2f sec with 2 cores" % t1)
+
+start = time() # start timer()
+double_deletion(cobra_model, element_list_1=cobra_model.genes[:100],
+ number_of_processes=1)
+t2 = time() - start
+print("Double gene deletions for 100 genes completed in %.2f sec with 1 core" % t2)
+
+print("Speedup of %.2fx" % (t2/t1))
+# Prints:
+# Double gene deletions for 100 genes completed in 4.02 sec with 2 cores
+# Double gene deletions for 100 genes completed in 6.77 sec with 1 core
+# Speedup of 1.69x
+
+# Double deletions can also be run for reactions
+
+start = time()
+double_deletion(cobra_model, element_list_1=cobra_model.reactions[:100],
+ element_type="reaction")
+t = time() - start
+print("Double reaction deletions for 100 reactions completed in %.2f sec" % t)
+# Prints:
+# Double reaction deletions for 100 reactions completed in 0.93 sec
+
+# If pandas is installed, the results can be returned formatted as a
+# pandas.DataFrame
+
+frame = double_deletion(cobra_model, element_list_1=cobra_model.reactions[300:308],
+ element_type="reaction", return_frame=True)
+frame[frame < 1e-9] = 0. # round small values to 0
+frame
diff --git a/examples/getting_started.py b/examples/getting_started.py
new file mode 100644
index 0000000..70ca2bf
--- /dev/null
+++ b/examples/getting_started.py
@@ -0,0 +1,250 @@
+
+## Getting Started
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/getting_started.
+# ipynb).
+
+# To begin with, cobrapy comes with two bundled models for _Salmonella_ and _E.
+# coli_. To load a test model, type
+
+from __future__ import print_function
+import cobra.test
+model = cobra.test.create_test_model("salmonella")
+
+
+# The reactions, metabolites, and genes attributes of the cobrapy model are are
+# a special type of list called a DictList, and each one is made up of
+# Reaction, Metabolite and Gene objects respectively.
+
+print(len(model.reactions))
+print(len(model.metabolites))
+print(len(model.genes))
+# Prints:
+# 2546
+# 1802
+# 1264
+
+# Just like a regular list, objects in the DictList can be retrived by index.
+# For example, to get the 30th reaction in the model (at index 29 because of
+# [0-indexing](https://en.wikipedia.org/wiki/Z ero-based_numbering)):
+
+model.reactions[29]
+# Output:
+# <Reaction 2AGPA180tipp at 0x7f6d94afc210>
+
+# Addictionally, items can be retrived by their id using the get_by_id()
+# function. For example, to get the cytosolic atp metabolite object (the id is
+# "atp_c"), we can do the following:
+
+model.metabolites.get_by_id("atp_c")
+# Output:
+# <Metabolite atp_c at 0x7f6d94b4c610>
+
+# As an added bonus, users with an interactive shell such as IPython will be
+# able to tab-complete to list elements inside a list. While this is not
+# recommended behavior for most code because of the possibility for characters
+# like "-" inside ids, this is very useful while in an interactive prompt:
+
+model.reactions.EX_glc__D_e.lower_bound
+# Output:
+# 0.0
+
+### Reactions
+
+# We will consider the reaction glucose 6-phosphate isomerase, which
+# interconverts glucose 6-phosphate and fructose 6-phosphate. The reaction id
+# for this reaction in our test model is PGI.
+
+pgi = model.reactions.get_by_id("PGI")
+pgi
+# Output:
+# <Reaction PGI at 0x7f6d93e62110>
+
+# We can view the full name and reaction catalyzed as strings
+
+print(pgi.name)
+print(pgi.reaction)
+# Prints:
+# glucose 6 phosphate isomerase
+# g6p_c <=> f6p_c
+
+# We can also view reaction upper and lower bounds. Because the pgi.lower_bound
+# < 0, and pgi.upper_bound > 0, pgi is reversible
+
+print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+print(pgi.reversibility)
+# Prints:
+# -1000.0 < pgi < 1000.0
+# True
+
+# We can also ensure the reaction is mass balanced. This function will return
+# elements which violate mass balance. If it comes back empty, then the
+# reaction is mass balanced.
+
+pgi.check_mass_balance()
+# Output:
+# []
+
+# In order to add a metabolite, we pass in a dict with the metabolite object
+# and its coefficient
+
+pgi.add_metabolites({model.metabolites.get_by_id("h_c"): -1})
+pgi.reaction
+# Output:
+# 'g6p_c + h_c <=> f6p_c'
+
+# The reaction is no longer mass balanced
+
+pgi.check_mass_balance()
+# Output:
+# ['PGI', {'C': 0.0, 'H': -1.0, 'O': 0.0, 'P': 0.0}]
+
+# We can remove the metabolite, and the reaction will be balanced once again.
+
+pgi.pop(model.metabolites.get_by_id("h_c"))
+print(pgi.reaction)
+print(pgi.check_mass_balance())
+# Prints:
+# g6p_c <=> f6p_c
+# []
+
+# It is also possible to build the reaction from a string. However, care must
+# be taken when doing this to ensure reaction id's match those in the model.
+# The direction of the arrow is also used to update the upper and lower bounds.
+
+pgi.reaction = "g6p_c --> f6p_c + h_c + green_eggs + ham"
+# Prints:
+# unknown metabolite 'green_eggs' created
+# unknown metabolite 'ham' created
+
+pgi.reaction
+# Output:
+# 'g6p_c --> ham + green_eggs + f6p_c + h_c'
+
+pgi.reaction = "g6p_c <=> f6p_c"
+pgi.reaction
+# Output:
+# 'g6p_c <=> f6p_c'
+
+### Metabolites
+
+# We will consider cytosolic atp as our metabolite, which has the id atp_c in
+# our test model.
+
+atp = model.metabolites.get_by_id("atp_c")
+atp
+# Output:
+# <Metabolite atp_c at 0x7f6d94b4c610>
+
+# We can print out the metabolite name and compartment (cytosol in this case).
+
+print(atp.name)
+print(atp.compartment)
+# Prints:
+# ATP
+# c
+
+# We can see that ATP is a charged molecule in our model.
+
+atp.charge
+# Output:
+# -4
+
+# We can see the chemical formula for the metabolite as well.
+
+print(atp.formula)
+# Prints:
+# C10H12N5O13P3
+
+# The reactions attribute gives a frozenset of all reactions using the given
+# metabolite. We can use this to count the number of reactions which use atp.
+
+len(atp.reactions)
+# Output:
+# 348
+
+# A metabolite like glucose 6-phosphate will participate in fewer reactions.
+
+model.metabolites.get_by_id("g6p_c").reactions
+# Output:
+# frozenset({<Reaction AB6PGH at 0x7f6d93b3d990>,
+# <Reaction TRE6PH at 0x7f6d93d32050>,
+# <Reaction TRE6PS at 0x7f6d93d32310>,
+# <Reaction PGI at 0x7f6d93e62110>,
+# <Reaction PGMT at 0x7f6d93e62690>,
+# <Reaction HEX1 at 0x7f6d940be9d0>,
+# <Reaction GLCptspp at 0x7f6d9412a650>,
+# <Reaction G6PDH2r at 0x7f6d94155790>,
+# <Reaction G6PP at 0x7f6d94155990>,
+# <Reaction G6Pt6_2pp at 0x7f6d94155a50>})
+
+### Genes
+
+# The gene_reaction_rule is a boolean representation of the gene requirements
+# for this reaction to be active as described in [Schellenberger et al 2011
+# Nature Protocols
+# 6(9):1290-307](http://dx.doi.org/doi:10.1038/nprot.2011.308).
+#
+# The GPR is stored as the gene_reaction_rule for a Reaction object as a
+# string.
+
+gpr = pgi.gene_reaction_rule
+gpr
+# Output:
+# 'STM4221'
+
+# Corresponding gene objects also exist. These objects are tracked by the
+# reactions itself, as well as by the model
+
+pgi.genes
+# Output:
+# frozenset({<Gene STM4221 at 0x7f6d93e62190>})
+
+pgi_gene = model.genes.get_by_id("STM4221")
+pgi_gene
+# Output:
+# <Gene STM4221 at 0x7f6d93e62190>
+
+# Each gene keeps track of the reactions it catalyzes
+
+pgi_gene.reactions
+# Output:
+# frozenset({<Reaction PGI at 0x7f6d93e62110>})
+
+# Altering the gene_reaction_rule will create new gene objects if necessary and
+# update all relationships.
+
+pgi.gene_reaction_rule = "(spam or eggs)"
+pgi.genes
+# Output:
+# frozenset({<Gene eggs at 0x7f6d93ad5ad0>, <Gene spam at 0x7f6d93ad5b10>})
+
+pgi_gene.reactions
+# Output:
+# frozenset()
+
+# Newly created genes are also added to the model
+
+model.genes.get_by_id("spam")
+# Output:
+# <Gene spam at 0x7f6d93ad5b10>
+
+# The delete_model_genes function will evaluate the gpr and set the upper and
+# lower bounds to 0 if the reaction is knocked out. This function can preserve
+# existing deletions or reset them using the cumulative_deletions flag.
+
+cobra.manipulation.delete_model_genes(model, ["spam"], cumulative_deletions=True)
+print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+cobra.manipulation.delete_model_genes(model, ["eggs"], cumulative_deletions=True)
+print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+# Prints:
+# -1000 < pgi < 1000
+# 0.0 < pgi < 0.0
+
+# The undelete_model_genes can be used to reset a gene deletion
+
+cobra.manipulation.undelete_model_genes(model)
+print(pgi.lower_bound, "< pgi <", pgi.upper_bound)
+# Prints:
+# -1000 < pgi < 1000
diff --git a/examples/io.py b/examples/io.py
new file mode 100644
index 0000000..88d930b
--- /dev/null
+++ b/examples/io.py
@@ -0,0 +1,117 @@
+
+## Reading and Writing Models
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/io.ipynb).
+#
+# Functions for reading and writing models to various formats are included with
+# cobrapy. The package also ships with models of *E. coli* and *Salmonella* in
+# various formats for testing purposes. In this example, we will use these
+# functions to read models from these test files in various formats.
+
+import cobra.test
+
+print("E. coli test files: ")
+print(", ".join([i for i in dir(cobra.test) if i.startswith("ecoli")]))
+print("")
+print("Salmonella test files: ")
+print(", ".join([i for i in dir(cobra.test) if i.startswith("salmonella")]))
+
+salmonella_model = cobra.test.create_test_model("salmonella")
+# Prints:
+# E. coli test files:
+# ecoli_json, ecoli_mat, ecoli_pickle, ecoli_sbml
+#
+# Salmonella test files:
+# salmonella_fbc_sbml, salmonella_pickle, salmonella_sbml
+
+### JSON
+
+# cobrapy has a [JSON](https://en.wikipedia.org/wiki/JSON) (JavaScript Object
+# Notation) representation. This is the ideal format for storing a cobra model
+# on a computer, or for interoperability with
+# [escher](https://escher.github.io). Additional fields, however, will not be
+# saved.
+
+cobra.io.load_json_model(cobra.test.ecoli_json)
+# Output:
+# <Model iJO1366 at 0x7f8d2fa20150>
+
+cobra.io.write_sbml_model(salmonella_model, "test.json")
+
+### SBML
+
+# The [Systems Biology Markup Language](http://sbml.org) is an XML-based
+# standard format for distributing models. Cobrapy can use
+# [libsbml](http://sbml.org/Software/libSBML), which must be installed
+# separately (see installation instructions) to read and write SBML files.
+#
+# Initially, the COBRA format for SBML files used the "notes" field in SBML
+# files. More recently, however, the [FBC extension](http://sbml.org/Documents/
+# Specifications/SBML_Level_3/Packages/Flux_Balance_Constraints_%28flux%29) to
+# SBML has come into existence, which defines its own fields.
+#
+# Cobrapy can handle both formats (assuming libsbml has been installed
+# correctly). When reading in a model, it will automatically detect whether fbc
+# was used or not. When writing a model, the use_fbc_package can be used.
+
+cobra.io.read_sbml_model(cobra.test.salmonella_sbml)
+# Output:
+# <Model Salmonella_consensus_build_1 at 0x7f8d480ad710>
+
+cobra.io.read_sbml_model(cobra.test.salmonella_fbc_sbml)
+# Output:
+# <Model Salmonella_consensus_build_1 at 0x7f8d480ad5d0>
+
+cobra.io.write_sbml_model(salmonella_model, "test.xml",
+ use_fbc_package=False)
+cobra.io.write_sbml_model(salmonella_model, "test_fbc.xml",
+ use_fbc_package=True)
+
+
+### MATLAB
+
+# Often, models may be imported and exported soley for the purposes of working
+# with the same models in cobrapy and the [MATLAB cobra
+# toolbox](http://opencobra.github.io/cobratoolbox/). MATLAB has its own ".mat"
+# format for storing variables. Reading and writing to these mat files from
+# python requires scipy, and is generally much faster than using libsbml.
+#
+# A mat file can contain multiple MATLAB variables. Therefore, the variable
+# name of the model in the MATLAB file can be passed into the reading function:
+
+cobra.io.load_matlab_model(cobra.test.ecoli_mat, variable_name="iJO1366")
+# Output:
+# <Model iJO1366 at 0x7f8d48090b50>
+
+# If the mat file contains only a single model, cobra can figure out which
+# variable to read from, and the variable_name paramter is unnecessary.
+
+cobra.io.load_matlab_model(cobra.test.ecoli_mat)
+# Output:
+# <Model iJO1366 at 0x7f8d2d85af10>
+
+# Saving models to mat files is also relatively straightforward
+
+cobra.io.save_matlab_model(ecoli_model, "test_ecoli_model.mat")
+
+### Pickle
+
+# Cobra models can be serialized using the python serialization format,
+# [pickle](https://docs.python.org/2/library/pickle.html). While this will save
+# any extra fields which may have been created, it does not work with any other
+# tools and can break between cobrapy major versions. JSON is generally the
+# preferred format.
+
+from cPickle import load, dump
+
+# read in the test models
+with open(cobra.test.ecoli_pickle, "rb") as infile:
+ ecoli_model = load(infile)
+with open(cobra.test.salmonella_pickle, "rb") as infile:
+ salmonella_model = load(infile)
+
+# output to a file
+with open("test_output.pickle", "wb") as outfile:
+ dump(salmonella_model, outfile)
+
diff --git a/examples/loopless.py b/examples/loopless.py
new file mode 100644
index 0000000..8cb7746
--- /dev/null
+++ b/examples/loopless.py
@@ -0,0 +1,141 @@
+
+## Loopless FBA
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/loopless.ipynb).
+#
+# The goal of this procedure is identification of a thermodynamically
+# consistent flux state without loops, as implied by the name.
+#
+# Usually, the model has the following constraints.
+# $$ S \cdot v = 0 $$
+# $$ lb \le v \le ub $$
+#
+# However, this will allow for thermodynamically infeasible loops (referred to
+# as type 3 loops) to occur, where flux flows around a cycle without any net
+# change of metabolites. For most cases, this is not a major issue, as
+# solutions with these loops can usually be converted to equivalent solutions
+# without them. However, if a flux state is desired which does not exhibit any
+# of these loops, loopless FBA can be used. The formulation used here is
+# modified from [Schellenberger et
+# al.](http://dx.doi.org/10.1016/j.bpj.2010.12.3707)
+#
+# We can make the model irreversible, so that all reactions will satisfy
+# $$ 0 \le lb \le v \le ub \le \max(ub) $$
+#
+# We will add in boolean indicators as well, such that
+# $$ \max(ub) i \ge v $$
+# $$ i \in {0, 1} $$
+#
+# We also want to ensure that an entry in the row space of S also exists with
+# negative values wherever v is nonzero. In this expression, $1-i$ acts as a
+# not to indicate inactivity of a reaction.
+#
+# $$ S^\mathsf T x - (1 - i) (\max(ub) + 1) \le -1 $$
+#
+# We will construct an LP integrating both constraints.
+#
+# $$ \left(
+# \begin{matrix}
+# S & 0 & 0\\
+# -I & \max(ub)I & 0 \\
+# 0 & (\max(ub) + 1)I & S^\mathsf T
+# \end{matrix}
+# \right)
+# \cdot
+# \left(
+# \begin{matrix}
+# v \\
+# i \\
+# x
+# \end{matrix}
+# \right)
+# \begin{matrix}
+# &=& 0 \\
+# &\ge& 0 \\
+# &\le& \max(ub)
+# \end{matrix}$$
+#
+# Note that these extra constraints are not applied to boundary reactions which
+# bring metabolites in and out of the system.
+
+import cobra.test
+from cobra import Reaction, Metabolite, Model
+from cobra.flux_analysis.loopless import construct_loopless_model
+from cobra.solvers import get_solver_name
+
+
+# We will demonstrate with a toy model which has a simple loop cycling A -> B
+# -> C -> A, with A allowed to enter the system and C allowed to leave. A
+# graphical view of the system is drawn below:
+
+figure(figsize=(10.5, 4.5), frameon=False)
+gca().axis("off")
+xlim(0.5, 3.5)
+ylim(0.7, 2.2)
+arrow_params = {"head_length": 0.08, "head_width": 0.1, "ec": "k", "fc": "k"}
+text_params = {"fontsize": 25, "horizontalalignment": "center", "verticalalignment": "center"}
+arrow(0.5, 1, 0.85, 0, **arrow_params) # EX_A
+arrow(1.5, 1, 0.425, 0.736, **arrow_params) # v1
+arrow(2.04, 1.82, 0.42, -0.72, **arrow_params) # v2
+arrow(2.4, 1, -0.75, 0, **arrow_params) # v3
+arrow(2.6, 1, 0.75, 0, **arrow_params)
+# reaction labels
+text(0.9, 1.15, "EX_A", **text_params)
+text(1.6, 1.5, r"v$_1$", **text_params)
+text(2.4, 1.5, r"v$_2$", **text_params)
+text(2, 0.85, r"v$_3$", **text_params)
+text(2.9, 1.15, "DM_C", **text_params)
+# metabolite labels
+scatter(1.5, 1, s=250, color='#c994c7')
+text(1.5, 0.9, "A", **text_params)
+scatter(2, 1.84, s=250, color='#c994c7')
+text(2, 1.95, "B", **text_params)
+scatter(2.5, 1, s=250, color='#c994c7')
+text(2.5, 0.9, "C", **text_params);
+
+test_model = Model()
+test_model.add_metabolites(Metabolite("A"))
+test_model.add_metabolites(Metabolite("B"))
+test_model.add_metabolites(Metabolite("C"))
+EX_A = Reaction("EX_A")
+EX_A.add_metabolites({test_model.metabolites.A: 1})
+DM_C = Reaction("DM_C")
+DM_C.add_metabolites({test_model.metabolites.C: -1})
+v1 = Reaction("v1")
+v1.add_metabolites({test_model.metabolites.A: -1, test_model.metabolites.B: 1})
+v2 = Reaction("v2")
+v2.add_metabolites({test_model.metabolites.B: -1, test_model.metabolites.C: 1})
+v3 = Reaction("v3")
+v3.add_metabolites({test_model.metabolites.C: -1, test_model.metabolites.A: 1})
+DM_C.objective_coefficient = 1
+test_model.add_reactions([EX_A, DM_C, v1, v2, v3])
+
+
+# While this model contains a loop, a flux state exists which has no flux
+# through reaction v3, and is identified by loopless FBA.
+
+construct_loopless_model(test_model).optimize()
+# Output:
+# <Solution 1000.00 at 0x62cd250>
+
+# However, if flux is forced through v3, then there is no longer a feasible
+# loopless solution.
+
+v3.lower_bound = 1
+construct_loopless_model(test_model).optimize()
+# Output:
+# <Solution 'infeasible' at 0x62cd5d0>
+
+# Loopless FBA is also possible on genome scale models, but it requires a
+# capable MILP solver.
+
+salmonella = cobra.test.create_test_model()
+construct_loopless_model(salmonella).optimize(solver=get_solver_name(mip=True))
+# Output:
+# <Solution 0.38 at 0x9e67650>
+
+ecoli = cobra.test.create_test_model("ecoli")
+construct_loopless_model(ecoli).optimize(solver=get_solver_name(mip=True))
+# Output:
+# <Solution 0.98 at 0x8e463d0>
diff --git a/examples/milp.py b/examples/milp.py
new file mode 100644
index 0000000..d23cc0d
--- /dev/null
+++ b/examples/milp.py
@@ -0,0 +1,217 @@
+
+## Mixed-Integer Linear Programming
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/milp.ipynb).
+
+### Ice Cream
+
+# This example was originally contributed by Joshua Lerman.
+#
+# An ice cream stand sells cones and popsicles. It wants to maximize its
+# profit, but is subject to a budget.
+#
+# We can write this problem as a linear program:
+#
+# > **max** cone $\cdot$ cone_margin + popsicle $\cdot$ popsicle margin
+#
+# > *subject to*
+#
+# > cone $\cdot$ cone_cost + popsicle $\cdot$ popsicle_cost $\le$ budget
+
+cone_selling_price = 7.
+cone_production_cost = 3.
+popsicle_selling_price = 2.
+popsicle_production_cost = 1.
+starting_budget = 100.
+
+
+# This problem can be written as a cobra.Model
+
+from cobra import Model, Metabolite, Reaction
+
+cone = Reaction("cone")
+popsicle = Reaction("popsicle")
+
+# constrainted to a budget
+budget = Metabolite("budget")
+budget._constraint_sense = "L"
+budget._bound = starting_budget
+cone.add_metabolites({budget: cone_production_cost})
+popsicle.add_metabolites({budget: popsicle_production_cost})
+
+# objective coefficient is the profit to be made from each unit
+cone.objective_coefficient = cone_selling_price - cone_production_cost
+popsicle.objective_coefficient = popsicle_selling_price - \
+ popsicle_production_cost
+
+m = Model("lerman_ice_cream_co")
+m.add_reactions((cone, popsicle))
+
+m.optimize().x_dict
+# Output:
+# {'cone': 33.333333333333336, 'popsicle': 0.0}
+
+# In reality, cones and popsicles can only be sold in integer amounts. We can
+# use the variable kind attribute of a cobra.Reaction to enforce this.
+
+cone.variable_kind = "integer"
+popsicle.variable_kind = "integer"
+m.optimize().x_dict
+# Output:
+# {'cone': 33.0, 'popsicle': 1.0}
+
+# Now the model makes both popsicles and cones.
+
+### Restaurant Order
+
+# To tackle the less immediately obvious problem from the following [XKCD
+# comic](http://xkcd.com/287/):
+
+from IPython.display import Image
+Image(url=r"http://imgs.xkcd.com/comics/np_complete.png")
+
+# We want a solution satisfying the following constraints:
+#
+# $\left(\begin{matrix}2.15&2.75&3.35&3.55&4.20&5.80\end{matrix}\right) \cdot
+# \vec v = 15.05$
+#
+# $\vec v_i \ge 0$
+#
+# $\vec v_i \in \mathbb{Z}$
+#
+# This problem can be written as a COBRA model as well.
+
+total_cost = Metabolite("constraint")
+total_cost._bound = 15.05
+
+costs = {"mixed_fruit": 2.15, "french_fries": 2.75, "side_salad": 3.35,
+ "hot_wings": 3.55, "mozarella_sticks": 4.20, "sampler_plate": 5.80}
+
+m = Model("appetizers")
+
+for item, cost in costs.items():
+ r = Reaction(item)
+ r.add_metabolites({total_cost: cost})
+ r.variable_kind = "integer"
+ m.add_reaction(r)
+
+# To add to the problem, suppose we don't want to eat all mixed fruit.
+m.reactions.mixed_fruit.objective_coefficient = 1
+
+m.optimize(objective_sense="minimize").x_dict
+# Output:
+# {'french_fries': 0.0,
+# 'hot_wings': 2.0,
+# 'mixed_fruit': 1.0,
+# 'mozarella_sticks': 0.0,
+# 'sampler_plate': 1.0,
+# 'side_salad': 0.0}
+
+# There is another solution to this problem, which would have been obtained if
+# we had maximized for mixed fruit instead of minimizing.
+
+m.optimize(objective_sense="maximize").x_dict
+# Output:
+# {'french_fries': 0.0,
+# 'hot_wings': 0.0,
+# 'mixed_fruit': 7.0,
+# 'mozarella_sticks': 0.0,
+# 'sampler_plate': 0.0,
+# 'side_salad': 0.0}
+
+### Boolean Indicators
+
+# To give a COBRA-related example, we can create boolean variables as integers,
+# which can serve as indicators for a reaction being active in a model. For a
+# reaction flux $v$ with lower bound -1000 and upper bound 1000, we can create
+# a binary variable $b$ with the following constraints:
+#
+# $b \in \{0, 1\}$
+#
+# $-1000 \cdot b \le v \le 1000 \cdot b$
+#
+# To introduce the above constraints into a cobra model, we can rewrite them as
+# follows
+#
+# $v \le b \cdot 1000 \Rightarrow v- 1000\cdot b \le 0$
+#
+# $-1000 \cdot b \le v \Rightarrow v + 1000\cdot b \ge 0$
+
+import cobra.test
+model = cobra.test.create_test_model(cobra.test.ecoli_pickle)
+
+# an indicator for pgi
+pgi = model.reactions.get_by_id("PGI")
+# make a boolean variable
+pgi_indicator = Reaction("indicator_PGI")
+pgi_indicator.lower_bound = 0
+pgi_indicator.upper_bound = 1
+pgi_indicator.variable_kind = "integer"
+# create constraint for v - 1000 b <= 0
+pgi_plus = Metabolite("PGI_plus")
+pgi_plus._constraint_sense = "L"
+# create constraint for v + 1000 b >= 0
+pgi_minus = Metabolite("PGI_minus")
+pgi_minus._constraint_sense = "G"
+
+pgi_indicator.add_metabolites({pgi_plus: -1000, pgi_minus: 1000})
+pgi.add_metabolites({pgi_plus: 1, pgi_minus: 1})
+model.add_reaction(pgi_indicator)
+
+
+# an indicator for zwf
+zwf = model.reactions.get_by_id("G6PDH2r")
+zwf_indicator = Reaction("indicator_ZWF")
+zwf_indicator.lower_bound = 0
+zwf_indicator.upper_bound = 1
+zwf_indicator.variable_kind = "integer"
+# create constraint for v - 1000 b <= 0
+zwf_plus = Metabolite("ZWF_plus")
+zwf_plus._constraint_sense = "L"
+# create constraint for v + 1000 b >= 0
+zwf_minus = Metabolite("ZWF_minus")
+zwf_minus._constraint_sense = "G"
+
+zwf_indicator.add_metabolites({zwf_plus: -1000, zwf_minus: 1000})
+zwf.add_metabolites({zwf_plus: 1, zwf_minus: 1})
+
+# add the indicator reactions to the model
+model.add_reaction(zwf_indicator)
+
+
+# In a model with both these reactions active, the indicators will also be
+# active
+
+solution = model.optimize()
+print("PGI indicator = %d" % solution.x_dict["indicator_PGI"])
+print("ZWF indicator = %d" % solution.x_dict["indicator_ZWF"])
+print("PGI flux = %.2f" % solution.x_dict["PGI"])
+print("ZWF flux = %.2f" % solution.x_dict["G6PDH2r"])
+# Prints:
+# PGI indicator = 1
+# ZWF indicator = 1
+# PGI flux = 5.92
+# ZWF flux = 4.08
+
+# Because these boolean indicators are in the model, additional constraints can
+# be applied on them. For example, we can prevent both reactions from being
+# active at the same time by adding the following constraint:
+#
+# $b_\text{pgi} + b_\text{zwf} = 1$
+
+or_constraint = Metabolite("or")
+or_constraint._bound = 1
+zwf_indicator.add_metabolites({or_constraint: 1})
+pgi_indicator.add_metabolites({or_constraint: 1})
+
+solution = model.optimize()
+print("PGI indicator = %d" % solution.x_dict["indicator_PGI"])
+print("ZWF indicator = %d" % solution.x_dict["indicator_ZWF"])
+print("PGI flux = %.2f" % solution.x_dict["PGI"])
+print("ZWF flux = %.2f" % solution.x_dict["G6PDH2r"])
+# Prints:
+# PGI indicator = 0
+# ZWF indicator = 1
+# PGI flux = 0.00
+# ZWF flux = 3.98
diff --git a/examples/phenotype_phase_plane.py b/examples/phenotype_phase_plane.py
new file mode 100644
index 0000000..d6f282a
--- /dev/null
+++ b/examples/phenotype_phase_plane.py
@@ -0,0 +1,53 @@
+
+## Phenotype Phase Plane
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/phenotype_phase_
+# plane.ipynb).
+
+# Load iJO1366 as a test model and import cobra
+
+from time import time
+
+import cobra
+from cobra.test import ecoli_pickle, create_test_model
+
+from cobra.flux_analysis.phenotype_phase_plane import \
+ calculate_phenotype_phase_plane
+
+model = create_test_model(ecoli_pickle)
+model
+# Output:
+# <Model iJO1366 at 0x5b0abd0>
+
+# We want to make a phenotype phase plane to evaluate uptakes of Glucose and
+# Oxygen.
+#
+# With [matplotlib](http://matplotlib.org) installed, this is as simple as
+
+data = calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e")
+data.plot_matplotlib();
+
+# If [brewer2mpl](https://pypi.python.org/pypi/brewer2mpl/) is installed, other
+# color schemes can be used as well
+
+data.plot_matplotlib("Pastel1")
+data.plot_matplotlib("Dark2");
+
+# The number of points which are plotted in each dimension can also be changed
+
+calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e",
+ reaction1_npoints=20,
+ reaction2_npoints=20).plot_matplotlib();
+
+# The code can also use multiple processes to speed up calculations
+
+start_time = time()
+calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e", n_processes=1)
+print("took %.2f seconds with 1 process" % (time() - start_time))
+start_time = time()
+calculate_phenotype_phase_plane(model, "EX_glc_e", "EX_o2_e", n_processes=4)
+print("took %.2f seconds with 4 process" % (time() - start_time))
+# Prints:
+# took 5.97 seconds with 1 process
+# took 2.97 seconds with 4 process
diff --git a/examples/qp.py b/examples/qp.py
new file mode 100644
index 0000000..2c45297
--- /dev/null
+++ b/examples/qp.py
@@ -0,0 +1,133 @@
+
+## Quadratic Programming
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/qp.ipynb).
+
+# Suppose we want to minimize the Euclidean distance of the solution to the
+# origin while subject to linear constraints. This will require a quadratic
+# objective function. Consider this example problem:
+#
+# > **min** $\frac{1}{2}\left(x^2 + y^2 \right)$
+#
+# > *subject to*
+#
+# > $x + y = 2$
+#
+# > $x \ge 0$
+#
+# > $y \ge 0$
+#
+# This problem can be visualized graphically:
+
+from matplotlib.pyplot import figure, xlim, ylim
+from mpl_toolkits.axes_grid.axislines import SubplotZero
+from numpy import linspace, arange, sqrt, pi, sin, cos, sign
+# axis style
+def make_plot_ax():
+ fig = figure(figsize=(6, 5));
+ ax = SubplotZero(fig, 111); fig.add_subplot(ax)
+ for direction in ["xzero", "yzero"]:
+ ax.axis[direction].set_axisline_style("-|>")
+ ax.axis[direction].set_visible(True)
+ for direction in ["left", "right", "bottom", "top"]:
+ ax.axis[direction].set_visible(False)
+ xlim(-0.1, 2.1); ylim(xlim())
+ ticks = [0.5 * i for i in range(1, 5)]
+ labels = [str(i) if i == int(i) else "" for i in ticks]
+ ax.set_xticks(ticks); ax.set_yticks(ticks)
+ ax.set_xticklabels(labels); ax.set_yticklabels(labels)
+ ax.axis["yzero"].set_axis_direction("left")
+ return ax
+
+ax = make_plot_ax()
+ax.plot((0, 2), (2, 0), 'b')
+ax.plot([1], [1], 'bo')
+
+# circular grid
+for r in sqrt(2.) + 0.125 * arange(-11, 6):
+ t = linspace(0., pi/2., 100)
+ ax.plot(r * cos(t), r * sin(t), '-.', color="gray")
+
+# The objective can be rewritten as $\frac{1}{2} v^T \cdot \mathbf Q \cdot v$,
+# where
+# $v = \left(\begin{matrix} x \\ y\end{matrix} \right)$ and
+# $\mathbf Q = \left(\begin{matrix} 1 & 0\\ 0 & 1 \end{matrix}\right)$
+#
+# The matrix $\mathbf Q$ can be passed into a cobra model as the quadratic
+# objective.
+
+import scipy
+
+from cobra import Reaction, Metabolite, Model, solvers
+
+
+# The quadratic objective $\mathbf Q$ should be formatted as a scipy sparse
+# matrix.
+
+Q = scipy.sparse.eye(2).todok()
+Q
+# Output:
+# <2x2 sparse matrix of type '<type 'numpy.float64'>'
+# with 2 stored elements in Dictionary Of Keys format>
+
+# In this case, the quadratic objective is simply the identity matrix
+
+Q.todense()
+# Output:
+# matrix([[ 1., 0.],
+# [ 0., 1.]])
+
+# We need to use a solver that supports quadratic programming, such as gurobi
+# or cplex. If a solver which supports quadratic programming is installed, this
+# function will return its name.
+
+print(solvers.get_solver_name(qp=True))
+# Prints:
+# gurobi
+
+c = Metabolite("c")
+c._bound = 2
+x = Reaction("x")
+y = Reaction("y")
+x.add_metabolites({c: 1})
+y.add_metabolites({c: 1})
+m = Model()
+m.add_reactions([x, y])
+sol = m.optimize(quadratic_component=Q, objective_sense="minimize")
+sol.x_dict
+# Output:
+# {'x': 1.0, 'y': 1.0}
+
+# Suppose we change the problem to have a mixed linear and quadratic objective.
+#
+# > **min** $\frac{1}{2}\left(x^2 + y^2 \right) - y$
+#
+# > *subject to*
+#
+# > $x + y = 2$
+#
+# > $x \ge 0$
+#
+# > $y \ge 0$
+#
+# Graphically, this would be
+
+ax = make_plot_ax()
+ax.plot((0, 2), (2, 0), 'b')
+ax.plot([0.5], [1.5], 'bo')
+
+yrange = linspace(1, 2, 11)
+for r in (yrange ** 2 / 2. - yrange):
+ t = linspace(-sqrt(2 * r + 1) + 0.000001, sqrt(2 * r + 1) - 0.000001, 1000)
+ ax.plot(abs(t), 1 + sqrt(2 * r + 1 - t ** 2) * sign(t), '-.', color="gray")
+
+# QP solvers in cobrapy will combine linear and quadratic coefficients. The
+# linear portion will be obtained from the same objective_coefficient attribute
+# used with LP's.
+
+y.objective_coefficient = -1
+sol = m.optimize(quadratic_component=Q, objective_sense="minimize")
+sol.x_dict
+# Output:
+# {'x': 0.5, 'y': 1.5}
diff --git a/examples/simulating.py b/examples/simulating.py
new file mode 100644
index 0000000..897fda9
--- /dev/null
+++ b/examples/simulating.py
@@ -0,0 +1,81 @@
+
+## Simulating with FBA
+
+# This example is available as an IPython [notebook](http://nbviewer.ipython.or
+# g/github/opencobra/cobrapy/blob/master/documentation_builder/simulating.ipynb
+# ).
+#
+# Simulations using flux balance analysis can be solved using Model.optimize().
+# This will maximize or minimize (maximizing is the default) flux through the
+# objective reactions.
+#
+
+import cobra.test
+model = cobra.test.create_test_model()
+
+
+### Running FBA
+
+model.optimize()
+# Output:
+# <Solution 0.38 at 0x660d990>
+
+# The Model.optimize() function will return a Solution object, which will also
+# be stored at model.solution. A solution object has several attributes:
+#
+# - f: the objective value
+# - status: the status from the linear programming solver
+# - x_dict: a dictionary of {reaction_id: flux_value} (also called "primal")
+# - x: a list for x_dict
+# - y_dict: a dictionary of {metabolite_id: dual_value}.
+# - y: a list for y_dict
+
+# For example, after the last call to model.optimize(), the status should be
+# 'optimal' if the solver returned no errors, and f should be the objective
+# value
+
+model.solution.status
+# Output:
+# 'optimal'
+
+model.solution.f
+# Output:
+# 0.38000797227551136
+
+### Changing the Objectives
+
+# The objective function is determined from the objective_coefficient attribute
+# of the objective reaction(s). Currently in the model, there is only one
+# objective reaction, with an objective coefficient of 1.
+
+{reaction: reaction.objective_coefficient for reaction in model.reactions
+ if reaction.objective_coefficient > 0}
+# Output:
+# {<Reaction biomass_iRR1083_metals at 0x660d350>: 1.0}
+
+# The objective function can be changed by using the function
+# Model.change_objective, which will take either a reaction object or just its
+# name.
+
+# change the objective to ATPM
+# the upper bound should be 1000 so we get the actual optimal value
+model.reactions.get_by_id("ATPM").upper_bound = 1000.
+model.change_objective("ATPM")
+{reaction: reaction.objective_coefficient for reaction in model.reactions
+ if reaction.objective_coefficient > 0}
+# Output:
+# {<Reaction ATPM at 0x52cb190>: 1.0}
+
+model.optimize()
+# Output:
+# <Solution 119.67 at 0x4c93110>
+
+# The objective function can also be changed by setting
+# Reaction.objective_coefficient directly.
+
+model.reactions.get_by_id("ATPM").objective_coefficient = 0.
+model.reactions.get_by_id("biomass_iRR1083_metals").objective_coefficient = 1.
+{reaction: reaction.objective_coefficient for reaction in model.reactions
+ if reaction.objective_coefficient > 0}
+# Output:
+# {<Reaction biomass_iRR1083_metals at 0x660d350>: 1.0}
diff --git a/ez_setup.py b/ez_setup.py
new file mode 100644
index 0000000..1bcd3e9
--- /dev/null
+++ b/ez_setup.py
@@ -0,0 +1,332 @@
+#!/usr/bin/env python
+"""Bootstrap setuptools installation
+
+To use setuptools in your package's setup.py, include this
+file in the same directory and add this to the top of your setup.py::
+
+ from ez_setup import use_setuptools
+ use_setuptools()
+
+To require a specific version of setuptools, set a download
+mirror, or use an alternate download directory, simply supply
+the appropriate options to ``use_setuptools()``.
+
+This file can also be run as a script to install or upgrade setuptools.
+"""
+import os
+import shutil
+import sys
+import tempfile
+import zipfile
+import optparse
+import subprocess
+import platform
+import textwrap
+import contextlib
+
+from distutils import log
+
+try:
+ from urllib.request import urlopen
+except ImportError:
+ from urllib2 import urlopen
+
+try:
+ from site import USER_SITE
+except ImportError:
+ USER_SITE = None
+
+DEFAULT_VERSION = "4.0.1"
+DEFAULT_URL = "https://pypi.python.org/packages/source/s/setuptools/"
+
+def _python_cmd(*args):
+ """
+ Return True if the command succeeded.
+ """
+ args = (sys.executable,) + args
+ return subprocess.call(args) == 0
+
+
+def _install(archive_filename, install_args=()):
+ with archive_context(archive_filename):
+ # installing
+ log.warn('Installing Setuptools')
+ if not _python_cmd('setup.py', 'install', *install_args):
+ log.warn('Something went wrong during the installation.')
+ log.warn('See the error message above.')
+ # exitcode will be 2
+ return 2
+
+
+def _build_egg(egg, archive_filename, to_dir):
+ with archive_context(archive_filename):
+ # building an egg
+ log.warn('Building a Setuptools egg in %s', to_dir)
+ _python_cmd('setup.py', '-q', 'bdist_egg', '--dist-dir', to_dir)
+ # returning the result
+ log.warn(egg)
+ if not os.path.exists(egg):
+ raise IOError('Could not build the egg.')
+
+
+class ContextualZipFile(zipfile.ZipFile):
+ """
+ Supplement ZipFile class to support context manager for Python 2.6
+ """
+
+ def __enter__(self):
+ return self
+
+ def __exit__(self, type, value, traceback):
+ self.close()
+
+ def __new__(cls, *args, **kwargs):
+ """
+ Construct a ZipFile or ContextualZipFile as appropriate
+ """
+ if hasattr(zipfile.ZipFile, '__exit__'):
+ return zipfile.ZipFile(*args, **kwargs)
+ return super(ContextualZipFile, cls).__new__(cls)
+
+
+ at contextlib.contextmanager
+def archive_context(filename):
+ # extracting the archive
+ tmpdir = tempfile.mkdtemp()
+ log.warn('Extracting in %s', tmpdir)
+ old_wd = os.getcwd()
+ try:
+ os.chdir(tmpdir)
+ with ContextualZipFile(filename) as archive:
+ archive.extractall()
+
+ # going in the directory
+ subdir = os.path.join(tmpdir, os.listdir(tmpdir)[0])
+ os.chdir(subdir)
+ log.warn('Now working in %s', subdir)
+ yield
+
+ finally:
+ os.chdir(old_wd)
+ shutil.rmtree(tmpdir)
+
+
+def _do_download(version, download_base, to_dir, download_delay):
+ egg = os.path.join(to_dir, 'setuptools-%s-py%d.%d.egg'
+ % (version, sys.version_info[0], sys.version_info[1]))
+ if not os.path.exists(egg):
+ archive = download_setuptools(version, download_base,
+ to_dir, download_delay)
+ _build_egg(egg, archive, to_dir)
+ sys.path.insert(0, egg)
+
+ # Remove previously-imported pkg_resources if present (see
+ # https://bitbucket.org/pypa/setuptools/pull-request/7/ for details).
+ if 'pkg_resources' in sys.modules:
+ del sys.modules['pkg_resources']
+
+ import setuptools
+ setuptools.bootstrap_install_from = egg
+
+
+def use_setuptools(version=DEFAULT_VERSION, download_base=DEFAULT_URL,
+ to_dir=os.curdir, download_delay=15):
+ to_dir = os.path.abspath(to_dir)
+ rep_modules = 'pkg_resources', 'setuptools'
+ imported = set(sys.modules).intersection(rep_modules)
+ try:
+ import pkg_resources
+ except ImportError:
+ return _do_download(version, download_base, to_dir, download_delay)
+ try:
+ pkg_resources.require("setuptools>=" + version)
+ return
+ except pkg_resources.DistributionNotFound:
+ return _do_download(version, download_base, to_dir, download_delay)
+ except pkg_resources.VersionConflict as VC_err:
+ if imported:
+ msg = textwrap.dedent("""
+ The required version of setuptools (>={version}) is not available,
+ and can't be installed while this script is running. Please
+ install a more recent version first, using
+ 'easy_install -U setuptools'.
+
+ (Currently using {VC_err.args[0]!r})
+ """).format(VC_err=VC_err, version=version)
+ sys.stderr.write(msg)
+ sys.exit(2)
+
+ # otherwise, reload ok
+ del pkg_resources, sys.modules['pkg_resources']
+ return _do_download(version, download_base, to_dir, download_delay)
+
+def _clean_check(cmd, target):
+ """
+ Run the command to download target. If the command fails, clean up before
+ re-raising the error.
+ """
+ try:
+ subprocess.check_call(cmd)
+ except subprocess.CalledProcessError:
+ if os.access(target, os.F_OK):
+ os.unlink(target)
+ raise
+
+def download_file_powershell(url, target):
+ """
+ Download the file at url to target using Powershell (which will validate
+ trust). Raise an exception if the command cannot complete.
+ """
+ target = os.path.abspath(target)
+ ps_cmd = (
+ "[System.Net.WebRequest]::DefaultWebProxy.Credentials = "
+ "[System.Net.CredentialCache]::DefaultCredentials; "
+ "(new-object System.Net.WebClient).DownloadFile(%(url)r, %(target)r)"
+ % vars()
+ )
+ cmd = [
+ 'powershell',
+ '-Command',
+ ps_cmd,
+ ]
+ _clean_check(cmd, target)
+
+def has_powershell():
+ if platform.system() != 'Windows':
+ return False
+ cmd = ['powershell', '-Command', 'echo test']
+ with open(os.path.devnull, 'wb') as devnull:
+ try:
+ subprocess.check_call(cmd, stdout=devnull, stderr=devnull)
+ except Exception:
+ return False
+ return True
+
+download_file_powershell.viable = has_powershell
+
+def download_file_curl(url, target):
+ cmd = ['curl', url, '--silent', '--output', target]
+ _clean_check(cmd, target)
+
+def has_curl():
+ cmd = ['curl', '--version']
+ with open(os.path.devnull, 'wb') as devnull:
+ try:
+ subprocess.check_call(cmd, stdout=devnull, stderr=devnull)
+ except Exception:
+ return False
+ return True
+
+download_file_curl.viable = has_curl
+
+def download_file_wget(url, target):
+ cmd = ['wget', url, '--quiet', '--output-document', target]
+ _clean_check(cmd, target)
+
+def has_wget():
+ cmd = ['wget', '--version']
+ with open(os.path.devnull, 'wb') as devnull:
+ try:
+ subprocess.check_call(cmd, stdout=devnull, stderr=devnull)
+ except Exception:
+ return False
+ return True
+
+download_file_wget.viable = has_wget
+
+def download_file_insecure(url, target):
+ """
+ Use Python to download the file, even though it cannot authenticate the
+ connection.
+ """
+ src = urlopen(url)
+ try:
+ # Read all the data in one block.
+ data = src.read()
+ finally:
+ src.close()
+
+ # Write all the data in one block to avoid creating a partial file.
+ with open(target, "wb") as dst:
+ dst.write(data)
+
+download_file_insecure.viable = lambda: True
+
+def get_best_downloader():
+ downloaders = (
+ download_file_powershell,
+ download_file_curl,
+ download_file_wget,
+ download_file_insecure,
+ )
+ viable_downloaders = (dl for dl in downloaders if dl.viable())
+ return next(viable_downloaders, None)
+
+def download_setuptools(version=DEFAULT_VERSION, download_base=DEFAULT_URL,
+ to_dir=os.curdir, delay=15, downloader_factory=get_best_downloader):
+ """
+ Download setuptools from a specified location and return its filename
+
+ `version` should be a valid setuptools version number that is available
+ as an egg for download under the `download_base` URL (which should end
+ with a '/'). `to_dir` is the directory where the egg will be downloaded.
+ `delay` is the number of seconds to pause before an actual download
+ attempt.
+
+ ``downloader_factory`` should be a function taking no arguments and
+ returning a function for downloading a URL to a target.
+ """
+ # making sure we use the absolute path
+ to_dir = os.path.abspath(to_dir)
+ zip_name = "setuptools-%s.zip" % version
+ url = download_base + zip_name
+ saveto = os.path.join(to_dir, zip_name)
+ if not os.path.exists(saveto): # Avoid repeated downloads
+ log.warn("Downloading %s", url)
+ downloader = downloader_factory()
+ downloader(url, saveto)
+ return os.path.realpath(saveto)
+
+def _build_install_args(options):
+ """
+ Build the arguments to 'python setup.py install' on the setuptools package
+ """
+ return ['--user'] if options.user_install else []
+
+def _parse_args():
+ """
+ Parse the command line for options
+ """
+ parser = optparse.OptionParser()
+ parser.add_option(
+ '--user', dest='user_install', action='store_true', default=False,
+ help='install in user site package (requires Python 2.6 or later)')
+ parser.add_option(
+ '--download-base', dest='download_base', metavar="URL",
+ default=DEFAULT_URL,
+ help='alternative URL from where to download the setuptools package')
+ parser.add_option(
+ '--insecure', dest='downloader_factory', action='store_const',
+ const=lambda: download_file_insecure, default=get_best_downloader,
+ help='Use internal, non-validating downloader'
+ )
+ parser.add_option(
+ '--version', help="Specify which version to download",
+ default=DEFAULT_VERSION,
+ )
+ options, args = parser.parse_args()
+ # positional arguments are ignored
+ return options
+
+def main():
+ """Install or upgrade setuptools and EasyInstall"""
+ options = _parse_args()
+ archive = download_setuptools(
+ version=options.version,
+ download_base=options.download_base,
+ downloader_factory=options.downloader_factory,
+ )
+ return _install(archive, _build_install_args(options))
+
+if __name__ == '__main__':
+ sys.exit(main())
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..c11c79b
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,178 @@
+try:
+ import setuptools
+except ImportError:
+ import ez_setup
+ ez_setup.use_setuptools()
+from setuptools import setup, find_packages
+from sys import argv, path
+from os.path import isfile, abspath, dirname, join
+
+# import version to get the version string
+path.insert(0, abspath(join(dirname(__file__), "cobra")))
+from version import get_version, update_release_version
+path.pop(0)
+__version = get_version(pep440=True)
+
+# for running parallel tests due to a bug in python 2.7.3
+# http://bugs.python.org/issue15881#msg170215
+try:
+ import multiprocessing
+except:
+ None
+
+# If building something for distribution, ensure the VERSION
+# file is up to date
+if "sdist" in argv or "bdist_wheel" in argv:
+ update_release_version()
+
+# cython is optional for building. The c file can be used directly. However,
+# for certain functions, the c file must be generated, which requires cython.
+try:
+ from Cython.Build import cythonize
+ from distutils.version import StrictVersion
+ import Cython
+ if StrictVersion(Cython.__version__) < StrictVersion("0.21"):
+ raise ImportError("Cython version too old to use")
+except ImportError:
+ cythonize = None
+ for k in ["sdist", "develop"]:
+ if k in argv:
+ raise Exception("cython > 0.21 required for " + k)
+
+# Begin constructing arguments for building
+setup_kwargs = {}
+
+# for building the cglpk solver
+try:
+ from distutils.extension import Extension
+ from distutils.command.build_ext import build_ext
+ from os import name
+ from platform import system
+
+ class FailBuild(build_ext):
+ """allow building of the C extension to fail"""
+ def run(self):
+ try:
+ build_ext.run(self)
+ except Exception as e:
+ warn(e)
+
+ def build_extension(self, ext):
+ try:
+ build_ext.build_extension(self, ext)
+ except:
+ None
+
+ build_args = {}
+ setup_kwargs["cmdclass"] = {"build_ext": FailBuild}
+ # MAC OS X needs some additional configuration tweaks
+ # Build should be run with the python.org python
+ # Cython will output C which could generate warnings in clang
+ # due to the addition of additional unneeded functions. Because
+ # this is a known phenomenon, these warnings are silenced to
+ # make other potential warnings which do signal errors stand
+ # out.
+ if system() == "Darwin":
+ build_args["extra_compile_args"] = ["-Wno-unused-function"]
+
+ build_args["libraries"] = ["glpk"]
+ # It is possible to statically link libglpk to the built extension. This
+ # allows for simplified installation without the need to install libglpk to
+ # the system, and is also usueful when installing a particular version of
+ # glpk which conflicts with thesystem version. A static libglpk.a can be
+ # built by running configure with the export CLFAGS="-fPIC" and copying the
+ # file from src/.libs to either the default lib directory or to the build
+ # directory. For an example script, see
+ # https://gist.github.com/aebrahim/94a2b231d86821f7f225
+ include_dirs = []
+ library_dirs = []
+ if isfile("libglpk.a"):
+ library_dirs.append(abspath("."))
+ if isfile("glpk.h"):
+ include_dirs.append(abspath("."))
+ if name == "posix":
+ from subprocess import check_output
+ try:
+ glpksol_path = check_output(["which", "glpsol"]).strip()
+ glpk_path = abspath(join(dirname(glpksol_path), ".."))
+ include_dirs.append(join(glpk_path, "include"))
+ library_dirs.append(join(glpk_path, "lib"))
+ except:
+ None
+ if len(include_dirs) > 0:
+ build_args["include_dirs"] = include_dirs
+ if len(library_dirs) > 0:
+ build_args["library_dirs"] = library_dirs
+ # use cython if present, otherwise use c file
+ if cythonize:
+ ext_modules = cythonize([Extension("cobra.solvers.cglpk",
+ ["cobra/solvers/cglpk.pyx"],
+ **build_args)],
+ force=True)
+ else:
+ ext_modules = [Extension("cobra.solvers.cglpk",
+ ["cobra/solvers/cglpk.c"], **build_args)]
+except:
+ ext_modules = None
+
+extras = {
+ 'parallel': ['pp>=1.6.0'],
+ 'matlab': ["mlabwrap>=1.1"],
+ 'sbml': ["python-libsbml-experimental"],
+ 'array': ["numpy>=1.6", "scipy>=11.0"],
+ 'display': ["matplotlib", "brewer2mpl", "pandas"]
+}
+
+all_extras = set()
+for extra in extras.values():
+ all_extras.update(extra)
+extras["all"] = list(all_extras)
+
+setup(
+ name="cobra",
+ version=__version,
+ packages=find_packages(exclude=['cobra.oven', 'cobra.oven*']),
+ setup_requires=[],
+ install_requires=[],
+ extras_require=extras,
+ ext_modules=ext_modules,
+
+ package_data={
+ '': ['test/data/*',
+ 'VERSION',
+ 'mlab/matlab_scripts/*m']},
+
+ author="Daniel Robert Hyduke <danielhyduke at gmail.com>, "
+ "Ali Ebrahim <aebrahim at ucsd.edu>",
+ author_email="danielhyduke at gmail.com",
+ description="COBRApy is a package for constraints-based modeling of "
+ "biological networks",
+ license="GPL V3.0",
+ keywords="metabolism biology linear programming optimization flux"
+ " balance analysis fba",
+ url="https://opencobra.github.io/cobrapy",
+ test_suite="cobra.test.suite",
+ long_description="COnstraint-Based Reconstruction and Analysis (COBRA) "
+ "methods are widely used for genome-scale modeling of metabolic networks "
+ "in both prokaryotes and eukaryotes. COBRApy is a constraint-based "
+ "modeling package that is designed to accomodate the biological "
+ "complexity of the next generation of COBRA models and provides access to "
+ "commonly used COBRA methods, such as flux balance analysis, flux "
+ "variability analysis, and gene deletion analyses.",
+ download_url='https://pypi.python.org/pypi/cobra',
+ classifiers=['Development Status :: 5 - Production/Stable',
+ 'Environment :: Console',
+ 'Intended Audience :: Science/Research',
+ 'License :: OSI Approved :: GNU General Public License v3'
+ ' or later (GPLv3+)',
+ 'Operating System :: OS Independent',
+ 'Programming Language :: Python :: 2.7',
+ 'Programming Language :: Python :: 3.3',
+ 'Programming Language :: Python :: 3.4',
+ 'Programming Language :: Python :: Implementation :: CPython',
+ 'Programming Language :: Python :: Implementation :: Jython',
+ 'Topic :: Scientific/Engineering',
+ 'Topic :: Scientific/Engineering :: Bio-Informatics'
+ ],
+ platforms="GNU/Linux, Mac OS X >= 10.7, Microsoft Windows >= 7",
+ **setup_kwargs)
--
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