[med-svn] [python-dendropy] 02/02: Add initial Debian packaging
Andreas Tille
tille at debian.org
Mon Jun 22 13:54:37 UTC 2015
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository python-dendropy.
commit fe682773ff60682e2b2cfca07572cd725433d9de
Author: Andreas Tille <tille at debian.org>
Date: Mon Jun 22 15:53:41 2015 +0200
Add initial Debian packaging
---
debian/changelog | 5 ++++
debian/compat | 1 +
debian/control | 78 ++++++++++++++++++++++++++++++++++++++++++++++++
debian/copyright | 17 +++++++++++
debian/rules | 14 +++++++++
debian/source/format | 1 +
debian/upstream/metadata | 12 ++++++++
debian/watch | 3 ++
8 files changed, 131 insertions(+)
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..8b3cbd2
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+python-dendropy (4.0.2-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #???)
+
+ -- Andreas Tille <tille at debian.org> Mon, 22 Jun 2015 15:34:21 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..7642edf
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,78 @@
+Source: python-dendropy
+Section: python
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9),
+ dh-python,
+ python-all,
+ python-setuptools,
+ python3-all,
+ python3-setuptools,
+ python-sphinx
+Standards-Version: 3.9.6
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-dendropy.git
+Vcs-Git: git://anonscm.debian.org/debian-med/python-dendropy.git
+Homepage: http://dendropy.org/
+
+Package: python-dendropy
+Architecture: all
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ ${python:Depends}
+Description: DendroPy Phylogenetic Computing Library (Python 2)
+ DendroPy is a Python library for phylogenetic computing. It provides
+ classes and functions for the simulation, processing, and manipulation
+ of phylogenetic trees and character matrices, and supports the reading
+ and writing of phylogenetic data in a range of formats, such as NEXUS,
+ NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing
+ some useful phylogenetic operations, such as data conversion and tree
+ posterior distribution summarization, are also distributed and installed
+ as part of the libary. DendroPy can thus function as a stand-alone
+ library for phylogenetics, a component of more complex multi-library
+ phyloinformatic pipelines, or as a scripting “glue” that assembles and
+ drives such pipelines.
+ .
+ This package provides python2 modules.
+
+Package: python3-dendropy
+Architecture: all
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ ${python3:Depends}
+Description: DendroPy Phylogenetic Computing Library (Python 3)
+ DendroPy is a Python library for phylogenetic computing. It provides
+ classes and functions for the simulation, processing, and manipulation
+ of phylogenetic trees and character matrices, and supports the reading
+ and writing of phylogenetic data in a range of formats, such as NEXUS,
+ NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing
+ some useful phylogenetic operations, such as data conversion and tree
+ posterior distribution summarization, are also distributed and installed
+ as part of the libary. DendroPy can thus function as a stand-alone
+ library for phylogenetics, a component of more complex multi-library
+ phyloinformatic pipelines, or as a scripting “glue” that assembles and
+ drives such pipelines.
+ .
+ This package provides python3 modules.
+
+Package: python-dendropy-doc
+Architecture: all
+Section: doc
+Depends: ${misc:Depends},
+ ${sphinxdoc:Depends},
+ libjs-mathjax
+Description: DendroPy Phylogenetic Computing Library (Dokumentation)
+ DendroPy is a Python library for phylogenetic computing. It provides
+ classes and functions for the simulation, processing, and manipulation
+ of phylogenetic trees and character matrices, and supports the reading
+ and writing of phylogenetic data in a range of formats, such as NEXUS,
+ NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing
+ some useful phylogenetic operations, such as data conversion and tree
+ posterior distribution summarization, are also distributed and installed
+ as part of the libary. DendroPy can thus function as a stand-alone
+ library for phylogenetics, a component of more complex multi-library
+ phyloinformatic pipelines, or as a scripting “glue” that assembles and
+ drives such pipelines.
+ .
+ This package provides modules documentation.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..956a7b7
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,17 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Jeet Sukumaran <jeetsukumaran at gmail.com>
+Upstream-Name: DendroPy
+Source: https://pypi.python.org/pypi/DendroPy
+
+Files: *
+Copyright: 2014 Jeet Sukumaran <jeetsukumaran at gmail.com>
+ Mark T. Holder <mtholder at ku.edu>
+License: BSD-3-clause
+
+Files: debian/*
+Copyright: © 2015 Andreas Tille <tille at debian.org>
+License: BSD-3-clause
+
+License: BSD-3-clause
+ On Debian systems you can find the full test of the BSD license
+ at /usr/share/common-licenses/BSD.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..b42e2e3
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,14 @@
+#!/usr/bin/make -f
+
+DH_VERBOSE := 1
+
+DEBPKGNAME:=$(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+docpkg:=$(DEBPKGNAME)-doc
+
+export PYBUILD_NAME=dendropy
+
+pyrun = DEB_BUILD_OPTIONS= pybuild -s custom -p $(shell pyversions -dv) --test --test-args
+
+%:
+ dh $@ --with python2,python3,sphinxdoc --buildsystem=pybuild
+
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..678cc74
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+ Author: Jeet Sukumaran and Mark T. Holder
+ Title: "DendroPy: a Python library for phylogenetic computing"
+ Journal: Bioinformatics
+ Year: 2010
+ Volume: 26
+ Number: 12
+ Pages: 1569-1571
+ DOI: 10.1093/bioinformatics/btq228
+ PMID: 20421198
+ URL: http://bioinformatics.oxfordjournals.org/content/26/12/1569.abstract
+ eprint: http://bioinformatics.oxfordjournals.org/content/26/12/1569.full.pdf+html
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..88d4fae
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+https://pypi.python.org/pypi/DendroPy .*/D/DendroPy/DendroPy-([.\d]+)\.tar\.gz
--
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