[med-svn] [r8s] 01/02: Add primitive build time test

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r8s.

commit 509704c4711c5870189cd72970603d5240be561f
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jun 24 14:52:50 2015 +0200

    Add primitive build time test
---
 debian/changelog              |  6 ++++++
 debian/rules                  | 18 ++----------------
 debian/test/MCPyV-related.txt | 29 +++++++++++++++++++++++++++++
 3 files changed, 37 insertions(+), 16 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index b911e56..d8a23ea 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+r8s (1.8+ds-0ubuntu2) UNRELEASED; urgency=medium
+
+  * Add test
+
+ -- Andreas Tille <tille at debian.org>  Wed, 24 Jun 2015 14:52:33 +0200
+
 r8s (1.8+ds-0ubuntu1) trusty; urgency=low
 
   * Test upload to Debian Med PPA
diff --git a/debian/rules b/debian/rules
index 58ec00b..c83243c 100755
--- a/debian/rules
+++ b/debian/rules
@@ -2,22 +2,8 @@
 
 # DH_VERBOSE := 1
 
-# some helpful variables - uncomment them if needed
-# shamelessly stolen from http://jmtd.net/log/awk/
-#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
-#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
-#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
-#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
-#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
-#GIT_TAG        := $(subst ~,_,$(VERSION))
-
-# alternatively to manually set those variables you can
-#  include /usr/share/cdbs/1/rules/buildvars.mk
-# and use what is set there.  Any hint whether dh might set variables in
-# a similar manner are welcome.
-
 %:
 	dh $@
 
-#get-orig-source:
-#	. debian/get-orig-source
+override_dh_auto_test:
+	if ./r8s -b -f debian/test/MCPyV-related.txt | grep -q -w "PASSED *$$" ; then echo "Test passed" ; else echo "TEST FAILED" && exit 1 ; fi
diff --git a/debian/test/MCPyV-related.txt b/debian/test/MCPyV-related.txt
new file mode 100644
index 0000000..2850cd6
--- /dev/null
+++ b/debian/test/MCPyV-related.txt
@@ -0,0 +1,29 @@
+#NEXUS 
+
+Begin trees;
+tree TREE1 = [&R] ((((1:0.003006062288969929,(2:0.01052376266313912,3:0.0):0.0):0.01498273611339456,(4:0.008054379846897233,(5:0.004474847983200217,6:0.0):0.005927998327474722):0.005948993113118836):0.1843243876616698,((7:0.0,((8:0.0,(9:0.001479470851766806,(10:0.0,(11:0.001479149417266432,(12:0.0,13:7.025013854695134E-5):0.001430838199428081):0.0):0.0):0.0):0.003363598151424513,(14:0.00149623846174116,15:0.0):0.001945457871336731):0.0):0.03222759734791594,((16:0.0011922968042716,(17:0.0 [...]
+End;
+
+begin rates;
+
+blformat nsites=843 lengths=persite;
+
+collapse;
+
+mrca kh34 33 34 35 36 37 38 39 40 41 42 43;
+mrca ppkh34 34 35 36 37 38 39 40 41 42 43;
+mrca kh35 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32;
+mrca ppkh35 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32;
+
+fixage taxon=kh34 age=5.6;
+
+set penalty=add smoothing=100;
+[smoothing to be determined]
+
+divtime method=pl algorithm=tn;
+
+describe plot=chrono_description;
+
+showage shownamed=yes;
+
+end;
\ No newline at end of file

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