[med-svn] r19399 - in trunk/packages/R/r-bioc-shortread/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-06-27 17:30:02 +0000 (Sat, 27 Jun 2015)
New Revision: 19399

Modified:
   trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
   trunk/packages/R/r-bioc-shortread/trunk/debian/control
   trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2015-06-27 17:03:10 UTC (rev 19398)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2015-06-27 17:30:02 UTC (rev 19399)
@@ -1,3 +1,10 @@
+r-bioc-shortread (1.26.0-1) unstable; urgency=medium
+
+  * New upstream version
+    Closes: #789985
+
+ -- Andreas Tille <tille at debian.org>  Sat, 27 Jun 2015 19:18:04 +0200
+
 r-bioc-shortread (1.24.0-1) experimental; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/control	2015-06-27 17:03:10 UTC (rev 19398)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/control	2015-06-27 17:30:02 UTC (rev 19399)
@@ -9,7 +9,7 @@
                r-base-dev,
                r-cran-latticeextra,
                r-bioc-biobase (>= 2.26.0),
-               r-bioc-genomicalignments (>= 1.2.0),
+               r-bioc-genomicalignments (>= 1.4.1),
                r-cran-hwriter
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
@@ -23,7 +23,7 @@
          ${shlibs:Depends},
          r-cran-latticeextra,
          r-bioc-biobase (>= 2.26.0),
-         r-bioc-genomicalignments (>= 1.2.0),
+         r-bioc-genomicalignments (>= 1.4.1),
          r-cran-hwriter
 Description: GNU R classes and methods for high-throughput short-read sequencing data
  This BioConductor module is a package for input, quality assessment,

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-06-27 17:03:10 UTC (rev 19398)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-06-27 17:30:02 UTC (rev 19399)
@@ -8,7 +8,7 @@
 +++ b/DESCRIPTION
 @@ -18,7 +18,7 @@ Depends: BiocGenerics (>= 0.11.3), BiocP
          2.33.14), Rsamtools (>= 1.17.28), GenomicAlignments (>= 1.1.28)
- Imports: Biobase, S4Vectors (>= 0.2.2), IRanges (>= 1.99.27),
+ Imports: Biobase, S4Vectors (>= 0.5.11), IRanges (>= 1.99.27),
          GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.17.39), hwriter,
 -        methods, zlibbioc, lattice, latticeExtra,
 +        methods, lattice, latticeExtra,