[med-svn] r19401 - in trunk/packages/R/r-bioc-rtracklayer/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-06-27 21:25:51 +0000 (Sat, 27 Jun 2015)
New Revision: 19401

Modified:
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2015-06-27 17:30:41 UTC (rev 19400)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2015-06-27 21:25:51 UTC (rev 19401)
@@ -1,3 +1,9 @@
+r-bioc-rtracklayer (1.28.5-1) experimental; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Sat, 27 Jun 2015 23:09:08 +0200
+
 r-bioc-rtracklayer (1.26.0-1) experimental; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2015-06-27 17:30:41 UTC (rev 19400)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2015-06-27 21:25:51 UTC (rev 19401)
@@ -8,7 +8,7 @@
                r-base-dev,
                r-cran-xml,
                r-cran-rcurl,
-               r-bioc-genomicalignments (>= 1.2.0)
+               r-bioc-genomicalignments (>= 1.4.1)
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
@@ -21,7 +21,7 @@
          ${shlibs:Depends},
          r-cran-xml,
          r-cran-rcurl,
-         r-bioc-genomicalignments (>= 1.2.0)
+         r-bioc-genomicalignments (>= 1.4.1)
 Description: GNU R interface to genome browsers and their annotation tracks
  Extensible framework for interacting with multiple genome browsers
  (currently UCSC built-in) and manipulating annotation tracks in various

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-06-27 17:30:41 UTC (rev 19400)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-06-27 21:25:51 UTC (rev 19401)
@@ -6,12 +6,12 @@
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
 @@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, R
- Depends: R (>= 2.10), methods, GenomicRanges (>= 1.17.39)
- Imports: XML (>= 1.98-0), BiocGenerics (>= 0.11.3), S4Vectors (>=
-         0.2.3), IRanges (>= 1.99.28), XVector (>= 0.5.8), GenomeInfoDb
--        (>= 1.1.19), Biostrings (>= 2.33.14), zlibbioc, RCurl (>=
-+        (>= 1.1.19), Biostrings (>= 2.33.14), RCurl (>=
-         1.4-2), Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.1.16),
+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.19.3)
+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.13.8), S4Vectors (>=
+         0.5.11), IRanges (>= 2.1.41), XVector (>= 0.5.8), GenomeInfoDb
+-        (>= 1.3.14), Biostrings (>= 2.33.14), zlibbioc, RCurl (>=
++        (>= 1.3.14), Biostrings (>= 2.33.14), RCurl (>=
+         1.4-2), Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.3.23),
          tools
  Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),
 --- a/NAMESPACE