[med-svn] [r-bioc-cummerbund] branch master updated (5b42143 -> fc6c79a)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-cummerbund.

      from  5b42143   Update copyright info
       new  3a04f51   Add autopkgtest based on vignettes
       new  efe7e1b   Imported Upstream version 2.10.0
       new  1fb7c37   Merge tag 'upstream/2.10.0'
       new  fc6c79a   New upstream version

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 DESCRIPTION                                       |  10 +-
 R/database-setup.R                                | 491 +++++++++++-----------
 build/vignette.rds                                | Bin 303 -> 302 bytes
 debian/README.test                                |   7 +-
 debian/changelog                                  |   5 +-
 debian/control                                    |   2 +-
 debian/docs                                       |   1 +
 debian/examples                                   |   1 +
 debian/patches/series                             |   1 +
 debian/patches/suppress_test_writing_to_usr.patch |  76 ++++
 debian/tests/control                              |   3 +
 debian/tests/run-unit-test                        |  18 +
 inst/NEWS                                         |  95 +++--
 inst/doc/cummeRbund-example-workflow.pdf          | Bin 198287 -> 198279 bytes
 inst/doc/cummeRbund-manual.R                      |  16 +-
 inst/doc/cummeRbund-manual.Rnw                    | 220 +++++-----
 inst/doc/cummeRbund-manual.pdf                    | Bin 1563970 -> 1563785 bytes
 inst/extdata/.RData                               | Bin 3317 -> 0 bytes
 inst/reports/runReport.Rnw                        |  86 ----
 vignettes/cummeRbund-manual.Rnw                   | 220 +++++-----
 20 files changed, 653 insertions(+), 599 deletions(-)
 create mode 100644 debian/examples
 create mode 100644 debian/patches/series
 create mode 100644 debian/patches/suppress_test_writing_to_usr.patch
 create mode 100644 debian/tests/control
 create mode 100644 debian/tests/run-unit-test
 delete mode 100644 inst/extdata/.RData
 delete mode 100644 inst/reports/runReport.Rnw

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