[med-svn] r18948 - trunk/packages/rdp-alignment/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-03-11 12:48:38 +0000 (Wed, 11 Mar 2015)
New Revision: 18948

Added:
   trunk/packages/rdp-alignment/trunk/debian/manpages
   trunk/packages/rdp-alignment/trunk/debian/rdp-alignment.1
Modified:
   trunk/packages/rdp-alignment/trunk/debian/control
Log:
Add manpage


Modified: trunk/packages/rdp-alignment/trunk/debian/control
===================================================================
--- trunk/packages/rdp-alignment/trunk/debian/control	2015-03-11 10:48:01 UTC (rev 18947)
+++ trunk/packages/rdp-alignment/trunk/debian/control	2015-03-11 12:48:38 UTC (rev 18948)
@@ -24,11 +24,10 @@
 Depends: ${shlibs:Depends},
          ${misc:Depends},
          ${java:Depends}
-Description: RDP Alignment tools package
- The Alignment tools package contains commands to do defined community analysis
- (Fish et al., 2013. FunGene: the functional gene pipeline and repository.
- Frontiers, Accepted), pairwise alignment and hidden markov model
- (HMMER3 models, no training).
+Description: Ribosomal Database Project (RDP) alignment tools package
+ The Alignment tools package contains commands to do defined community
+ analysis, pairwise alignment and hidden markov model (HMMER3 models,
+ no training).
  .
  The package also contains the AlignmentTools Java library which is used by
  other RDP tools.

Added: trunk/packages/rdp-alignment/trunk/debian/manpages
===================================================================
--- trunk/packages/rdp-alignment/trunk/debian/manpages	                        (rev 0)
+++ trunk/packages/rdp-alignment/trunk/debian/manpages	2015-03-11 12:48:38 UTC (rev 18948)
@@ -0,0 +1,2 @@
+debian/*.1
+

Added: trunk/packages/rdp-alignment/trunk/debian/rdp-alignment.1
===================================================================
--- trunk/packages/rdp-alignment/trunk/debian/rdp-alignment.1	                        (rev 0)
+++ trunk/packages/rdp-alignment/trunk/debian/rdp-alignment.1	2015-03-11 12:48:38 UTC (rev 18948)
@@ -0,0 +1,27 @@
+.TH RDP-ALIGNMENT "1" "March 2015" "RDP Library" "User Commands"
+.SH NAME
+rdp-alignment: \- Ribosomal Database Project (RDP) alignment tools package
+.SH SYNOPSIS
+.B rdp-alignment
+\fI<subcommand> <options>\fR
+.SH DESCRIPTION
+The Alignment tools package contains commands to do defined community
+analysis, pairwise alignment and hidden markov model (HMMER3 models,
+no training).
+.SH OPTIONS
+List of \fIsubcommands\fR:
+.TP
+alignment\-merger
+\- Merge alignments
+.TP
+pairwise\-knn
+\- Compute k\-nearest\-neighbors by pairwise alignment
+.TP
+compare\-error\-type
+\- Detect insertion, deletion and substitution errors in sequences comparing to reference sequences
+.TP
+align\-nucl\-to\-prot
+\- Transfer a sequence alignment from protein sequences to nucleotide sequences
+.TP
+rm\-partialseq
+\- remove partial sequences based on pairwise alignment to reference sequences